TW200712204A - Method of processing and/or genome mapping of ditag sequences - Google Patents

Method of processing and/or genome mapping of ditag sequences

Info

Publication number
TW200712204A
TW200712204A TW095121094A TW95121094A TW200712204A TW 200712204 A TW200712204 A TW 200712204A TW 095121094 A TW095121094 A TW 095121094A TW 95121094 A TW95121094 A TW 95121094A TW 200712204 A TW200712204 A TW 200712204A
Authority
TW
Taiwan
Prior art keywords
ditag
processing
genome
mapping
sequence
Prior art date
Application number
TW095121094A
Other languages
English (en)
Inventor
Kuo-Ping Chiu
yi-jun Ruan
Chia-Lin Wei
Original Assignee
Agency Science Tech & Res
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Agency Science Tech & Res filed Critical Agency Science Tech & Res
Publication of TW200712204A publication Critical patent/TW200712204A/zh

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/10—Ontologies; Annotations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
TW095121094A 2005-06-14 2006-06-13 Method of processing and/or genome mapping of ditag sequences TW200712204A (en)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US11/151,591 US8428882B2 (en) 2005-06-14 2005-06-14 Method of processing and/or genome mapping of diTag sequences

Publications (1)

Publication Number Publication Date
TW200712204A true TW200712204A (en) 2007-04-01

Family

ID=37524501

Family Applications (1)

Application Number Title Priority Date Filing Date
TW095121094A TW200712204A (en) 2005-06-14 2006-06-13 Method of processing and/or genome mapping of ditag sequences

Country Status (10)

Country Link
US (1) US8428882B2 (zh)
EP (1) EP1899860A4 (zh)
JP (1) JP2008547080A (zh)
KR (1) KR20080026153A (zh)
CN (1) CN101233509A (zh)
AU (1) AU2006258264B2 (zh)
BR (1) BRPI0611624A2 (zh)
CA (1) CA2611951A1 (zh)
TW (1) TW200712204A (zh)
WO (1) WO2006135342A1 (zh)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
TWI571763B (zh) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 次世代定序分析系統及其次世代定序分析方法

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GB0514910D0 (en) 2005-07-20 2005-08-24 Solexa Ltd Method for sequencing a polynucleotide template
US20090156431A1 (en) * 2007-12-12 2009-06-18 Si Lok Methods for Nucleic Acid Mapping and Identification of Fine Structural Variations in Nucleic Acids
CN101415839B (zh) 2006-02-08 2012-06-27 亿明达剑桥有限公司 对多核苷酸模板进行测序的方法
US8071296B2 (en) * 2006-03-13 2011-12-06 Agency For Science, Technology And Research Nucleic acid interaction analysis
US7754429B2 (en) 2006-10-06 2010-07-13 Illumina Cambridge Limited Method for pair-wise sequencing a plurity of target polynucleotides
US8263367B2 (en) * 2008-01-25 2012-09-11 Agency For Science, Technology And Research Nucleic acid interaction analysis
US9074244B2 (en) * 2008-03-11 2015-07-07 Affymetrix, Inc. Array-based translocation and rearrangement assays
US20120089338A1 (en) * 2009-03-13 2012-04-12 Life Technologies Corporation Computer implemented method for indexing reference genome
EP2470669B1 (en) 2009-08-25 2014-06-18 Illumina, Inc. Methods for selecting and amplifying polynucleotides
KR20110027533A (ko) 2009-09-09 2011-03-16 엘지전자 주식회사 다중 안테나 시스템에서 제어정보 전송 방법 및 장치
US20120302450A1 (en) * 2009-10-30 2012-11-29 Bernhard Palsson Bacterial Metastructure and Methods of Use
CN102789553B (zh) * 2012-07-23 2015-04-15 中国水产科学研究院 利用长转录组测序结果装配基因组的方法及装置
JP6198659B2 (ja) * 2014-04-03 2017-09-20 株式会社日立ハイテクノロジーズ 配列データ解析装置、ｄｎａ解析システムおよび配列データ解析方法
WO2017044609A1 (en) 2015-09-08 2017-03-16 Cold Spring Harbor Laboratory Genetic copy number determination using high throughput multiplex sequencing of smashed nucleotides
US11031092B2 (en) 2017-11-01 2021-06-08 International Business Machines Corporation Taxonomic annotation of variable length metagenomic patterns
PT3969618T (pt) 2020-03-09 2023-11-15 Illumina Inc Métodos para sequenciação de polinucleótidos
CN113517026B (zh) * 2021-06-16 2022-08-19 苏州拉索生物芯片科技有限公司 应用于生物制品的标签序列的生成方法、系统、智能终端及计算机可读存储介质
WO2023114397A1 (en) 2021-12-16 2023-06-22 Illumina, Inc. Hybrid clustering
WO2023114394A1 (en) 2021-12-17 2023-06-22 Illumina, Inc. Orthogonal hybridization
AU2023234670A1 (en) 2022-03-15 2024-01-18 Illumina, Inc. Concurrent sequencing of forward and reverse complement strands on separate polynucleotides for methylation detection
WO2023175042A1 (en) 2022-03-15 2023-09-21 Illumina, Inc. Parallel sample and index sequencing
WO2024061799A1 (en) 2022-09-19 2024-03-28 Illumina, Inc. Deformable polymers comprising immobilised primers
US20240102067A1 (en) 2022-09-26 2024-03-28 Illumina, Inc. Resynthesis Kits and Methods
US20240110234A1 (en) 2022-09-30 2024-04-04 Illumina, Inc. Amplification Compositions and Methods
US20240124929A1 (en) 2022-09-30 2024-04-18 Illumina, Inc. Mesophilic compositions for nucleic acid amplification
US20240110221A1 (en) 2022-09-30 2024-04-04 Illumina, Inc. Methods of modulating clustering kinetics
US20240124914A1 (en) 2022-09-30 2024-04-18 Illumina, Inc. Thermophilic compositions for nucleic acid amplification

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DE69913092T2 (de) * 1999-01-27 2004-09-09 Commissariat à l'Energie Atomique Microassay zur Serienanalyse der Genexpression und Anwendungen davon
US6816867B2 (en) * 2001-03-12 2004-11-09 Affymetrix, Inc. System, method, and user interfaces for mining of genomic data
JP2005516300A (ja) 2002-01-25 2005-06-02 アプレラ コーポレイション 製品およびサービスに対する注文を発注し、受理し、および充足する方法
GB0228289D0 (en) 2002-12-04 2003-01-08 Genome Inst Of Singapore Nat U Method
US8222005B2 (en) * 2003-09-17 2012-07-17 Agency For Science, Technology And Research Method for gene identification signature (GIS) analysis
WO2005042781A2 (en) 2003-10-31 2005-05-12 Agencourt Personal Genomics Corporation Methods for producing a paired tag from a nucleic acid sequence and methods of use thereof
US8005621B2 (en) 2004-09-13 2011-08-23 Agency For Science Technology And Research Transcript mapping method

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
TWI571763B (zh) * 2014-12-01 2017-02-21 財團法人資訊工業策進會 次世代定序分析系統及其次世代定序分析方法

Also Published As

Publication number Publication date
BRPI0611624A2 (pt) 2010-09-21
WO2006135342A1 (en) 2006-12-21
EP1899860A4 (en) 2008-08-06
AU2006258264A1 (en) 2006-12-21
US20060281097A1 (en) 2006-12-14
AU2006258264B2 (en) 2012-03-08
CN101233509A (zh) 2008-07-30
JP2008547080A (ja) 2008-12-25
EP1899860A1 (en) 2008-03-19
CA2611951A1 (en) 2006-12-21
US8428882B2 (en) 2013-04-23
KR20080026153A (ko) 2008-03-24

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