SG10202000731WA - Nucleic acid sequence assembly - Google Patents

Nucleic acid sequence assembly

Info

Publication number
SG10202000731WA
SG10202000731WA SG10202000731WA SG10202000731WA SG10202000731WA SG 10202000731W A SG10202000731W A SG 10202000731WA SG 10202000731W A SG10202000731W A SG 10202000731WA SG 10202000731W A SG10202000731W A SG 10202000731WA SG 10202000731W A SG10202000731W A SG 10202000731WA
Authority
SG
Singapore
Prior art keywords
nucleic acid
acid sequence
sequence assembly
assembly
nucleic
Prior art date
Application number
SG10202000731WA
Other languages
English (en)
Inventor
Nicholas H Putnam
Jonathan C Stites
Brandon J Rice
Original Assignee
Dovetail Genomics Llc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Dovetail Genomics Llc filed Critical Dovetail Genomics Llc
Publication of SG10202000731WA publication Critical patent/SG10202000731WA/en

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Chemical & Material Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biotechnology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
SG10202000731WA 2015-02-17 2016-02-17 Nucleic acid sequence assembly SG10202000731WA (en)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US201562117256P 2015-02-17 2015-02-17
US201662294208P 2016-02-11 2016-02-11

Publications (1)

Publication Number Publication Date
SG10202000731WA true SG10202000731WA (en) 2020-03-30

Family

ID=55587335

Family Applications (2)

Application Number Title Priority Date Filing Date
SG11201706730XA SG11201706730XA (en) 2015-02-17 2016-02-17 Nucleic acid sequence assembly
SG10202000731WA SG10202000731WA (en) 2015-02-17 2016-02-17 Nucleic acid sequence assembly

Family Applications Before (1)

Application Number Title Priority Date Filing Date
SG11201706730XA SG11201706730XA (en) 2015-02-17 2016-02-17 Nucleic acid sequence assembly

Country Status (11)

Country Link
US (4) US9715573B2 (ja)
EP (2) EP4030437A1 (ja)
JP (2) JP6777966B2 (ja)
KR (1) KR20170134379A (ja)
CN (1) CN107533590B (ja)
AU (1) AU2016220135B2 (ja)
CA (1) CA2976902A1 (ja)
IL (1) IL254000B (ja)
NZ (1) NZ734854A (ja)
SG (2) SG11201706730XA (ja)
WO (1) WO2016134034A1 (ja)

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AU2018366198A1 (en) * 2017-11-09 2020-05-28 Dovetail Genomics, Llc Structural variant analysis
CN111836639A (zh) 2018-01-26 2020-10-27 河谷细胞有限公司 用于联合癌症疫苗和免疫辅助疗法的组合物和方法
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CN108460248B (zh) * 2018-03-08 2022-02-22 北京希望组生物科技有限公司 一种基于Bionano平台检测长串联重复序列的方法
CN108897986B (zh) * 2018-05-29 2020-11-27 中南大学 一种基于蛋白质信息的基因组序列拼接方法
JP7361774B2 (ja) * 2018-07-27 2023-10-16 ミリアド・ウィメンズ・ヘルス・インコーポレーテッド シーケンスリードの独立したアラインメントおよびペアリングによって高度に相同なシーケンスにおける遺伝的変異を検出するための方法
EP3844760A1 (en) * 2018-08-31 2021-07-07 Guardant Health, Inc. Genetic variant detection based on merged and unmerged reads
CN109273052B (zh) * 2018-09-13 2022-03-18 北京百迈客生物科技有限公司 一种基因组单倍体组装方法及装置
WO2020154630A1 (en) * 2019-01-25 2020-07-30 Pacific Biosciences Of California, Inc. Systems and methods for graph based mapping of nucleic acid fragments
WO2021163637A1 (en) 2020-02-13 2021-08-19 Zymergen Inc. Metagenomic library and natural product discovery platform
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