AU2001293163A1 - Method for determining relative abundance of nucleic acid sequences - Google Patents

Method for determining relative abundance of nucleic acid sequences

Info

Publication number
AU2001293163A1
AU2001293163A1 AU2001293163A AU9316301A AU2001293163A1 AU 2001293163 A1 AU2001293163 A1 AU 2001293163A1 AU 2001293163 A AU2001293163 A AU 2001293163A AU 9316301 A AU9316301 A AU 9316301A AU 2001293163 A1 AU2001293163 A1 AU 2001293163A1
Authority
AU
Australia
Prior art keywords
nucleic acid
acid sequences
relative abundance
determining relative
determining
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2001293163A
Inventor
Glenn Albrecht
Sydney Brenner
Rongdian Fu
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Lynx Therapeutics Inc
Original Assignee
Lynx Therapeutics Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Lynx Therapeutics Inc filed Critical Lynx Therapeutics Inc
Publication of AU2001293163A1 publication Critical patent/AU2001293163A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
AU2001293163A 2000-09-27 2001-09-27 Method for determining relative abundance of nucleic acid sequences Abandoned AU2001293163A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US23594000P 2000-09-27 2000-09-27
US60/235,940 2000-09-27
PCT/US2001/030396 WO2002027029A2 (en) 2000-09-27 2001-09-27 Method for determining relative abundance of nucleic acid sequences

Publications (1)

Publication Number Publication Date
AU2001293163A1 true AU2001293163A1 (en) 2002-04-08

Family

ID=22887478

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2001293163A Abandoned AU2001293163A1 (en) 2000-09-27 2001-09-27 Method for determining relative abundance of nucleic acid sequences

Country Status (3)

Country Link
US (1) US6897023B2 (en)
AU (1) AU2001293163A1 (en)
WO (1) WO2002027029A2 (en)

Families Citing this family (103)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AU2001285155A1 (en) * 2000-08-21 2002-03-04 Lynx Therapeutics, Inc. Polymorphic dna fragments and uses thereof
US7115370B2 (en) * 2002-06-05 2006-10-03 Capital Genomix, Inc. Combinatorial oligonucleotide PCR
WO2004001074A1 (en) * 2002-06-21 2003-12-31 Lynx Therapeutics, Inc. Method for detecting foreign dna in a host genome
DE602004024034D1 (en) * 2003-01-29 2009-12-24 454 Corp NUCLEIC ACID AMPLIFICATION BASED ON KINGGEL EMULSION
DE602004027811D1 (en) * 2003-07-02 2010-08-05 Kyorin Seiyaku Kk CYCLOPROPYL GROUP SUBSTITUTED OXAZOLIDINONANTIBIOTICS AND DERIVATIVES THEREOF
KR100624459B1 (en) * 2005-02-03 2006-09-19 삼성전자주식회사 Method for electrically detecting biomolecule
US7544473B2 (en) * 2006-01-23 2009-06-09 Population Genetics Technologies Ltd. Nucleic acid analysis using sequence tokens
EP4170042A1 (en) 2006-06-14 2023-04-26 Verinata Health, Inc. Methods for the diagnosis of fetal abnormalities
CA2660286A1 (en) 2006-08-09 2008-02-21 Homestead Clinical Corporation Organ-specific proteins and methods of their use
EP2395113A1 (en) 2007-06-29 2011-12-14 Population Genetics Technologies Ltd. Methods and compositions for isolating nucleic acid sequence variants
US20090181390A1 (en) * 2008-01-11 2009-07-16 Signosis, Inc. A California Corporation High throughput detection of micrornas and use for disease diagnosis
US10174368B2 (en) 2009-09-10 2019-01-08 Centrillion Technology Holdings Corporation Methods and systems for sequencing long nucleic acids
WO2011032040A1 (en) 2009-09-10 2011-03-17 Centrillion Technology Holding Corporation Methods of targeted sequencing
EP3719140A1 (en) 2009-11-06 2020-10-07 The Board Of Trustees Of The Leland Stanford Junior University Non-invasive diagnosis of graft rejection in organ transplant patients
WO2011066330A2 (en) * 2009-11-24 2011-06-03 Life Technologies Corporation Selective amplification of polynucleotide sequences
WO2011087789A2 (en) * 2009-12-22 2011-07-21 Becton, Dickinson And Company Methods for the detection of microorganisms
JP5419012B2 (en) * 2010-01-12 2014-02-19 独立行政法人理化学研究所 Manufacturing method and manufacturing apparatus of substrate on which probe is fixed
US20190300945A1 (en) 2010-04-05 2019-10-03 Prognosys Biosciences, Inc. Spatially Encoded Biological Assays
US10787701B2 (en) 2010-04-05 2020-09-29 Prognosys Biosciences, Inc. Spatially encoded biological assays
HUE026666T2 (en) 2010-04-05 2016-07-28 Prognosys Biosciences Inc Spatially encoded biological assays
JP6069224B2 (en) 2011-01-31 2017-02-01 アプライズ バイオ， インコーポレイテッド Methods for identifying multiple epitopes in a cell
US20120252682A1 (en) 2011-04-01 2012-10-04 Maples Corporate Services Limited Methods and systems for sequencing nucleic acids
EP2694709B1 (en) 2011-04-08 2016-09-14 Prognosys Biosciences, Inc. Peptide constructs and assay systems
GB201106254D0 (en) 2011-04-13 2011-05-25 Frisen Jonas Method and product
CA2854832C (en) 2011-11-07 2023-05-23 Ingenuity Systems, Inc. Methods and systems for identification of causal genomic variants
US10174310B2 (en) 2012-08-08 2019-01-08 Roche Sequencing Solutions, Inc. Increasing dynamic range for identifying multiple epitopes in cells
ES2621285T3 (en) 2012-09-19 2017-07-03 Abbvie Biotherapeutics Inc. Methods to identify antibodies with reduced immunogenicity
US10089437B2 (en) 2013-02-01 2018-10-02 The Regents Of The University Of California Methods for genome assembly and haplotype phasing
US9411930B2 (en) 2013-02-01 2016-08-09 The Regents Of The University Of California Methods for genome assembly and haplotype phasing
EP3327123B1 (en) 2013-03-15 2019-08-28 Lineage Biosciences, Inc. Methods of sequencing the immune repertoire
ES2946689T3 (en) 2013-03-15 2023-07-24 Univ Leland Stanford Junior Identification and use of circulating nucleic acid tumor markers
CA2916660C (en) 2013-06-25 2022-05-17 Prognosys Biosciences, Inc. Spatially encoded biological assays using a microfluidic device
CN111593414A (en) 2013-08-05 2020-08-28 特韦斯特生物科学公司 De novo synthetic gene library
US10351899B2 (en) 2013-09-25 2019-07-16 Bio-ID Diagnostics Inc. Methods for detecting nucleic acid fragments
EP3066236B1 (en) 2013-11-07 2022-08-24 The Board of Trustees of the Leland Stanford Junior University Cell-free nucleic acids for the analysis of the human microbiome and components thereof
US11091758B2 (en) 2013-12-11 2021-08-17 The Regents Of The University Of California Methods for labeling DNAa fragments to reconstruct physical linkage and phase
EP3174980A4 (en) 2014-08-01 2018-01-17 Dovetail Genomics, LLC Tagging nucleic acids for sequence assembly
WO2016126882A1 (en) 2015-02-04 2016-08-11 Twist Bioscience Corporation Methods and devices for de novo oligonucleic acid assembly
CA2975855A1 (en) 2015-02-04 2016-08-11 Twist Bioscience Corporation Compositions and methods for synthetic gene assembly
NZ734854A (en) 2015-02-17 2022-11-25 Dovetail Genomics Llc Nucleic acid sequence assembly
JP6773687B2 (en) 2015-02-17 2020-10-21 エムジーアイ テック カンパニー リミテッドＭＧＩ Ｔｅｃｈ Ｃｏ．， Ｌｔｄ． DNA sequencing using controlled strand substitutions
US11807896B2 (en) 2015-03-26 2023-11-07 Dovetail Genomics, Llc Physical linkage preservation in DNA storage
US10774374B2 (en) 2015-04-10 2020-09-15 Spatial Transcriptomics AB and Illumina, Inc. Spatially distinguished, multiplex nucleic acid analysis of biological specimens
US9981239B2 (en) 2015-04-21 2018-05-29 Twist Bioscience Corporation Devices and methods for oligonucleic acid library synthesis
EA201890763A1 (en) 2015-09-18 2018-08-31 Твист Байосайенс Корпорейшн LIBRARIES OF OPTIONAL OLEG-NUCLEIC ACIDS AND THEIR SYNTHESIS
CN113604546A (en) 2015-09-22 2021-11-05 特韦斯特生物科学公司 Flexible substrates for nucleic acid synthesis
JP7300831B2 (en) 2015-10-19 2023-06-30 ダブテイル ゲノミクス エルエルシー Methods for Genome Assembly, Haplotype Phasing, and Target-Independent Nucleic Acid Detection
EP3384077A4 (en) 2015-12-01 2019-05-08 Twist Bioscience Corporation Functionalized surfaces and preparation thereof
KR20180116377A (en) 2016-02-23 2018-10-24 더브테일 제노믹스 엘엘씨 Generation and Hexagonal Paging of a Paged Read Set for Genome Assemblies
US9976181B2 (en) 2016-03-25 2018-05-22 Karius, Inc. Synthetic nucleic acid spike-ins
KR102412442B1 (en) 2016-05-13 2022-06-22 더브테일 제노믹스 엘엘씨 Retrieval of long-range linkage information from preserved samples
JP6854340B2 (en) 2016-08-22 2021-04-07 ツイスト バイオサイエンス コーポレーション Denovo Synthesized Nucleic Acid Library
KR102217487B1 (en) 2016-09-21 2021-02-23 트위스트 바이오사이언스 코포레이션 Nucleic acid-based data storage
CA3047128A1 (en) 2016-12-16 2018-06-21 Twist Bioscience Corporation Variant libraries of the immunological synapse and synthesis thereof
PT3565905T (en) 2017-01-04 2022-08-02 Mgi Tech Co Ltd Stepwise sequencing by non-labeled reversible terminators or natural nucleotides
KR20190119107A (en) 2017-02-22 2019-10-21 트위스트 바이오사이언스 코포레이션 Nucleic Acid Based Data Storage
EP3595674A4 (en) 2017-03-15 2020-12-16 Twist Bioscience Corporation Variant libraries of the immunological synapse and synthesis thereof
EP3610034B1 (en) 2017-04-12 2022-06-08 Karius, Inc. Sample preparation methods, systems and compositions
AU2018256358A1 (en) 2017-04-18 2019-11-07 Dovetail Genomics, Llc Nucleic acid characteristics as guides for sequence assembly
WO2018231864A1 (en) 2017-06-12 2018-12-20 Twist Bioscience Corporation Methods for seamless nucleic acid assembly
CA3066744A1 (en) 2017-06-12 2018-12-20 Twist Bioscience Corporation Methods for seamless nucleic acid assembly
US20200131506A1 (en) 2017-06-21 2020-04-30 Bluedot Llc Systems and methods for identification of nucleic acids in a sample
EP3681906A4 (en) 2017-09-11 2021-06-09 Twist Bioscience Corporation Gpcr binding proteins and synthesis thereof
WO2019060716A1 (en) 2017-09-25 2019-03-28 Freenome Holdings, Inc. Methods and systems for sample extraction
US10894242B2 (en) 2017-10-20 2021-01-19 Twist Bioscience Corporation Heated nanowells for polynucleotide synthesis
US20210371853A1 (en) * 2017-12-09 2021-12-02 Viome, Inc. Methods for nucleic acid library creation
KR20200106067A (en) 2018-01-04 2020-09-10 트위스트 바이오사이언스 코포레이션 DNA-based digital information storage
WO2019152543A1 (en) 2018-01-31 2019-08-08 Dovetail Genomics, Llc Sample prep for dna linkage recovery
WO2019222706A1 (en) 2018-05-18 2019-11-21 Twist Bioscience Corporation Polynucleotides, reagents, and methods for nucleic acid hybridization
US11519033B2 (en) 2018-08-28 2022-12-06 10X Genomics, Inc. Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample
US11926867B2 (en) 2019-01-06 2024-03-12 10X Genomics, Inc. Generating capture probes for spatial analysis
US11649485B2 (en) 2019-01-06 2023-05-16 10X Genomics, Inc. Generating capture probes for spatial analysis
KR20210143766A (en) 2019-02-26 2021-11-29 트위스트 바이오사이언스 코포레이션 Variant Nucleic Acid Libraries for the GLP1 Receptor
EP3938506A4 (en) 2019-02-26 2022-12-14 Twist Bioscience Corporation Variant nucleic acid libraries for antibody optimization
WO2020180813A1 (en) 2019-03-06 2020-09-10 Qiagen Sciences, Llc Compositions and methods for adaptor design and nucleic acid library construction for rolony-based sequencing
AU2020298294A1 (en) 2019-06-21 2022-02-17 Twist Bioscience Corporation Barcode-based nucleic acid sequence assembly
EP4055185A1 (en) 2019-11-08 2022-09-14 10X Genomics, Inc. Spatially-tagged analyte capture agents for analyte multiplexing
WO2021092433A2 (en) 2019-11-08 2021-05-14 10X Genomics, Inc. Enhancing specificity of analyte binding
DK3891300T3 (en) 2019-12-23 2023-05-22 10X Genomics Inc METHODS FOR SPATIAL ANALYSIS USING RNA TEMPLATE LIGATION
US11732299B2 (en) 2020-01-21 2023-08-22 10X Genomics, Inc. Spatial assays with perturbed cells
US11702693B2 (en) 2020-01-21 2023-07-18 10X Genomics, Inc. Methods for printing cells and generating arrays of barcoded cells
US11821035B1 (en) 2020-01-29 2023-11-21 10X Genomics, Inc. Compositions and methods of making gene expression libraries
US11898205B2 (en) 2020-02-03 2024-02-13 10X Genomics, Inc. Increasing capture efficiency of spatial assays
US11732300B2 (en) 2020-02-05 2023-08-22 10X Genomics, Inc. Increasing efficiency of spatial analysis in a biological sample
US11835462B2 (en) 2020-02-11 2023-12-05 10X Genomics, Inc. Methods and compositions for partitioning a biological sample
US11891654B2 (en) 2020-02-24 2024-02-06 10X Genomics, Inc. Methods of making gene expression libraries
US11926863B1 (en) 2020-02-27 2024-03-12 10X Genomics, Inc. Solid state single cell method for analyzing fixed biological cells
US11768175B1 (en) 2020-03-04 2023-09-26 10X Genomics, Inc. Electrophoretic methods for spatial analysis
CN115916999A (en) 2020-04-22 2023-04-04 10X基因组学有限公司 Methods for spatial analysis using targeted RNA depletion
EP4153775A1 (en) 2020-05-22 2023-03-29 10X Genomics, Inc. Simultaneous spatio-temporal measurement of gene expression and cellular activity
AU2021275906A1 (en) 2020-05-22 2022-12-22 10X Genomics, Inc. Spatial analysis to detect sequence variants
WO2021242834A1 (en) 2020-05-26 2021-12-02 10X Genomics, Inc. Method for resetting an array
AU2021283174A1 (en) 2020-06-02 2023-01-05 10X Genomics, Inc. Nucleic acid library methods
AU2021283184A1 (en) 2020-06-02 2023-01-05 10X Genomics, Inc. Spatial transcriptomics for antigen-receptors
WO2021252499A1 (en) 2020-06-08 2021-12-16 10X Genomics, Inc. Methods of determining a surgical margin and methods of use thereof
EP4165207A1 (en) 2020-06-10 2023-04-19 10X Genomics, Inc. Methods for determining a location of an analyte in a biological sample
AU2021294334A1 (en) 2020-06-25 2023-02-02 10X Genomics, Inc. Spatial analysis of DNA methylation
US11761038B1 (en) 2020-07-06 2023-09-19 10X Genomics, Inc. Methods for identifying a location of an RNA in a biological sample
US11926822B1 (en) 2020-09-23 2024-03-12 10X Genomics, Inc. Three-dimensional spatial analysis
US11827935B1 (en) 2020-11-19 2023-11-28 10X Genomics, Inc. Methods for spatial analysis using rolling circle amplification and detection probes
EP4121555A1 (en) 2020-12-21 2023-01-25 10X Genomics, Inc. Methods, compositions, and systems for capturing probes and/or barcodes
WO2022198068A1 (en) 2021-03-18 2022-09-22 10X Genomics, Inc. Multiplex capture of gene and protein expression from a biological sample
EP4196605A1 (en) 2021-09-01 2023-06-21 10X Genomics, Inc. Methods, compositions, and kits for blocking a capture probe on a spatial array

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CA2036946C (en) * 1990-04-06 2001-10-16 Kenneth V. Deugau Indexing linkers
US5710000A (en) * 1994-09-16 1998-01-20 Affymetrix, Inc. Capturing sequences adjacent to Type-IIs restriction sites for genomic library mapping
US5616465A (en) * 1995-08-09 1997-04-01 The Regents Of The University Of California Detection and isolation of nucleic acid sequences using competitive hybridization probes
US6265163B1 (en) * 1998-01-09 2001-07-24 Lynx Therapeutics, Inc. Solid phase selection of differentially expressed genes
US6232067B1 (en) 1998-08-17 2001-05-15 The Perkin-Elmer Corporation Adapter directed expression analysis

Also Published As

Publication number Publication date
WO2002027029A2 (en) 2002-04-04
US20030027157A1 (en) 2003-02-06
US6897023B2 (en) 2005-05-24
WO2002027029A3 (en) 2003-09-25

Similar Documents

Publication Publication Date Title
AU2001293163A1 (en) Method for determining relative abundance of nucleic acid sequences
AU2001278783A1 (en) Method of amplifying nucleic acid
AU7878301A (en) Method of amplifying nucleic acid
AU2002314693A1 (en) Nucleic acid amplification method
AU2002318386A1 (en) Methods for characterization of nucleic acid molecules
AU2002312859A1 (en) Method for determining gene expression
AU2002361708A1 (en) A method of real-time detection of nucleic acid sequences
AU2002356632A1 (en) Method for determining nucleic acid analytes
AU2002353310A1 (en) Method for the preparation of nucleic acids
AU2001296027A1 (en) Method of determining nucleic acid base sequence
AU2002238274A1 (en) Method for the detection of nucleic acid molecules
AU2001296015A1 (en) Method of synthesizing single-stranded nucleic acid
AU2001261476A1 (en) Nucleic acid sequences for novel gpcrs
AU2547100A (en) Method for isolating nucleic acids
AU2001263836A1 (en) Method of nucleic acid recovery
AU2001262152A1 (en) Method for extracting nucleic acids
AU2003234938A1 (en) Method of identifying nucleic acid
AU5599101A (en) Methods for detecting nucleic acid molecules having particular nucleotide sequences
AU2003223041A1 (en) Method for analysis of methylated nucleic acids
AU2002242075A1 (en) Methods for homology-driven reassembly of nucleic acid sequences
AU2002333351A1 (en) Method for identification of type specific polynucleotide sequences
AU2002221104A1 (en) Method of detecting relation between genes
AU2002367267A1 (en) Method of quantifying nucleic acid and kit for quantifying nucleic acid
AU7275900A (en) Method for determining nucleic and/or amino acid sequences
AU2001294212A1 (en) Method of analyzing nucleic acid