PL3350342T3 - Zestaw sond do analizowania próbki DNA i sposób jego zastosowania - Google Patents
Zestaw sond do analizowania próbki DNA i sposób jego zastosowaniaInfo
- Publication number
- PL3350342T3 PL3350342T3 PL16770570T PL16770570T PL3350342T3 PL 3350342 T3 PL3350342 T3 PL 3350342T3 PL 16770570 T PL16770570 T PL 16770570T PL 16770570 T PL16770570 T PL 16770570T PL 3350342 T3 PL3350342 T3 PL 3350342T3
- Authority
- PL
- Poland
- Prior art keywords
- analyzing
- same
- dna sample
- probe set
- probe
- Prior art date
Links
- 239000000523 sample Substances 0.000 title 2
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/11—DNA or RNA fragments; Modified forms thereof; Non-coding nucleic acids having a biological activity
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/682—Signal amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/50—Other enzymatic activities
- C12Q2521/501—Ligase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2531/00—Reactions of nucleic acids characterised by
- C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
- C12Q2531/125—Rolling circle
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/131—Allele specific probes
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2537/00—Reactions characterised by the reaction format or use of a specific feature
- C12Q2537/10—Reactions characterised by the reaction format or use of a specific feature the purpose or use of
- C12Q2537/16—Assays for determining copy number or wherein the copy number is of special importance
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2561/00—Nucleic acid detection characterised by assay method
- C12Q2561/125—Ligase Detection Reaction [LDR]
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- Biotechnology (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- General Health & Medical Sciences (AREA)
- Immunology (AREA)
- Physics & Mathematics (AREA)
- Biophysics (AREA)
- Biomedical Technology (AREA)
- Pathology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Oncology (AREA)
- Hospice & Palliative Care (AREA)
- Plant Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201562220746P | 2015-09-18 | 2015-09-18 | |
| EP16770570.6A EP3350342B1 (en) | 2015-09-18 | 2016-09-16 | Probe set for analyzing a dna sample and method for using the same |
| PCT/IB2016/055558 WO2017046775A1 (en) | 2015-09-18 | 2016-09-16 | Probe set for analyzing a dna sample and method for using the same |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| PL3350342T3 true PL3350342T3 (pl) | 2020-08-24 |
Family
ID=56990688
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| PL16770570T PL3350342T3 (pl) | 2015-09-18 | 2016-09-16 | Zestaw sond do analizowania próbki DNA i sposób jego zastosowania |
Country Status (11)
| Country | Link |
|---|---|
| US (4) | US10508300B2 (pl) |
| EP (2) | EP3350342B1 (pl) |
| JP (1) | JP6785839B2 (pl) |
| KR (1) | KR102753113B1 (pl) |
| CN (2) | CN106536735B (pl) |
| AU (2) | AU2016325100B2 (pl) |
| DK (1) | DK3350342T3 (pl) |
| ES (2) | ES2963242T3 (pl) |
| PL (1) | PL3350342T3 (pl) |
| RU (1) | RU2753883C2 (pl) |
| WO (1) | WO2017046775A1 (pl) |
Families Citing this family (16)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| RU2753883C2 (ru) | 2015-09-18 | 2021-08-24 | Ванадис Дайэгностикс | Набор зондов для анализа образцов днк и способы их использования |
| US11046995B2 (en) * | 2016-08-16 | 2021-06-29 | The Regents Of The University Of California | Method for finding low abundance sequences by hybridization (FLASH) |
| CN109234388B (zh) * | 2017-07-04 | 2021-09-14 | 深圳华大生命科学研究院 | 用于dna高甲基化区域富集的试剂、富集方法及应用 |
| US11117128B2 (en) | 2017-08-25 | 2021-09-14 | Vanadis Diagnostics Ab | Filtration device |
| CA3076809A1 (en) * | 2017-09-26 | 2019-04-04 | Juno Diagnostics, Inc. | Devices, systems and methods for biomarker analysis |
| EP3775272B1 (en) | 2018-04-02 | 2025-07-30 | Enumera Molecular, Inc. | Methods, systems, and compositions for counting nucleic acid molecules |
| WO2020082087A1 (en) * | 2018-10-19 | 2020-04-23 | Akoya Biosciences, Inc. | Detection of co-occurring receptor-coding nucleic acid segments |
| SG11202102700TA (en) | 2018-11-30 | 2021-04-29 | Illumina Inc | Analysis of multiple analytes using a single assay |
| WO2020206170A1 (en) | 2019-04-02 | 2020-10-08 | Progenity, Inc. | Methods, systems, and compositions for counting nucleic acid molecules |
| EP3956063A1 (en) | 2019-04-16 | 2022-02-23 | Countagen AB | Sample analysis device |
| IL293936A (en) * | 2019-12-23 | 2022-08-01 | Biofidelity Ltd | kits and devices |
| GB201919186D0 (en) | 2019-12-23 | 2020-02-05 | Biofidelity Ltd | Simplified polynucleotide sequence detection method |
| CN114540348B (zh) * | 2021-03-17 | 2023-06-30 | 浙江农林大学 | 毛竹寡核苷酸探针 |
| AU2022252323A1 (en) | 2021-04-01 | 2023-10-12 | Chemring Sensors & Electronic Systems, Inc. | Devices and methods for nucleic acid identification in samples |
| US12252745B2 (en) | 2021-09-02 | 2025-03-18 | Enumerix, Inc. | Detection and digital quantitation of multiple targets |
| WO2023239805A1 (en) * | 2022-06-07 | 2023-12-14 | The Johns Hopkins University | In situ nucleic acid analysis using probe pair ligation |
Family Cites Families (41)
| Publication number | Priority date | Publication date | Assignee | Title |
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| US5981179A (en) * | 1991-11-14 | 1999-11-09 | Digene Diagnostics, Inc. | Continuous amplification reaction |
| US5604097A (en) | 1994-10-13 | 1997-02-18 | Spectragen, Inc. | Methods for sorting polynucleotides using oligonucleotide tags |
| US5854033A (en) | 1995-11-21 | 1998-12-29 | Yale University | Rolling circle replication reporter systems |
| US6458530B1 (en) | 1996-04-04 | 2002-10-01 | Affymetrix Inc. | Selecting tag nucleic acids |
| US5948902A (en) | 1997-11-20 | 1999-09-07 | South Alabama Medical Science Foundation | Antisense oligonucleotides to human serine/threonine protein phosphatase genes |
| WO2001094625A2 (en) | 2000-06-06 | 2001-12-13 | Tm Bioscience Corporation | Capture moieties for nucleic acids and uses thereof |
| US6573051B2 (en) | 2001-03-09 | 2003-06-03 | Molecular Staging, Inc. | Open circle probes with intramolecular stem structures |
| US7208295B2 (en) | 2001-11-19 | 2007-04-24 | Affymetrix, Inc. | Multiplex oligonucleotide addition and target amplification |
| US20050164205A1 (en) | 2002-11-19 | 2005-07-28 | Singulex, Inc. | Charge and mass tags for detection and analysis |
| JP4230457B2 (ja) | 2002-12-18 | 2009-02-25 | サード・ウェーブ・テクノロジーズ・インク | 低分子核酸の検出方法 |
| EP1680517B1 (en) | 2003-11-04 | 2010-03-31 | Applied Biosystems, LLC | Concatameric ligation products: compositions, methods and kits for same |
| US20050233340A1 (en) | 2004-04-20 | 2005-10-20 | Barrett Michael T | Methods and compositions for assessing CpG methylation |
| SE0401270D0 (sv) * | 2004-05-18 | 2004-05-18 | Fredrik Dahl | Method for amplifying specific nucleic acids in parallel |
| US20070087355A1 (en) | 2005-10-14 | 2007-04-19 | Barrett Michael T | Comparative genomic hybridization assays and compositions for practicing the same |
| EP1975254A4 (en) | 2006-01-20 | 2009-12-02 | Olympus Corp | METHOD FOR DETECTING NUCLEOTIDE SEQUENCES WITH AN INTRAMOLE PROBE |
| US7862999B2 (en) * | 2007-01-17 | 2011-01-04 | Affymetrix, Inc. | Multiplex targeted amplification using flap nuclease |
| US20090061424A1 (en) | 2007-08-30 | 2009-03-05 | Sigma-Aldrich Company | Universal ligation array for analyzing gene expression or genomic variations |
| US20090156412A1 (en) * | 2007-12-17 | 2009-06-18 | Helicos Biosciences Corporation | Surface-capture of target nucleic acids |
| US8785414B2 (en) * | 2009-03-31 | 2014-07-22 | The United States Of America, As Represented By The Secretary, Department Of Health And Human Services | Differentially expressed microRNAs as biomarkers for the diagnosis and treatment of Sjögren's syndrome |
| GB0912909D0 (en) | 2009-07-23 | 2009-08-26 | Olink Genomics Ab | Probes for specific analysis of nucleic acids |
| US9630178B2 (en) | 2010-03-17 | 2017-04-25 | Ut-Battelle, Llc | Method for preparing small volume reaction containers |
| WO2011142836A2 (en) | 2010-05-14 | 2011-11-17 | Fluidigm Corporation | Assays for the detection of genotype, mutations, and/or aneuploidy |
| WO2012003374A2 (en) * | 2010-07-02 | 2012-01-05 | The Board Of Trustees Of The Leland Stanford Junior University | Targeted sequencing library preparation by genomic dna circularization |
| US20120034603A1 (en) | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
| AU2011305445B2 (en) * | 2010-09-24 | 2017-03-16 | The Board Of Trustees Of The Leland Stanford Junior University | Direct capture, amplification and sequencing of target DNA using immobilized primers |
| US10131947B2 (en) * | 2011-01-25 | 2018-11-20 | Ariosa Diagnostics, Inc. | Noninvasive detection of fetal aneuploidy in egg donor pregnancies |
| WO2012142591A2 (en) * | 2011-04-14 | 2012-10-18 | The Regents Of The University Of Colorado | Compositions, methods and uses for multiplex protein sequence activity relationship mapping |
| GB2492042B (en) | 2011-05-11 | 2020-04-15 | Agilent Technologies Inc | Selector probes for nucleic acid analysis comprising at each end a non-adjacent target specific region |
| CN102344961B (zh) * | 2011-09-30 | 2015-12-09 | 北京康旭医学检验所有限公司 | 一种经济的应用大规模平行测序技术检验多目标多基因的方法 |
| WO2013079649A1 (en) | 2011-12-02 | 2013-06-06 | Qiagen Gmbh | Method and kit for characterizing rna in a composition |
| US9193994B2 (en) | 2012-04-20 | 2015-11-24 | Samsung Electronics Co., Ltd. | Polynucleotide and use thereof |
| EP2929048B1 (en) * | 2012-12-06 | 2017-12-13 | Agilent Technologies, Inc. | Restriction enzyme-free target enrichment |
| US10150960B2 (en) * | 2013-02-26 | 2018-12-11 | Agilent Technologies, Inc. | C-probe libraries for DNA target enrichment |
| EP2964778B1 (en) * | 2013-03-05 | 2019-10-09 | Agilent Technologies, Inc. | Detection of genomic rearrangements by sequence capture |
| CN104099409B (zh) * | 2013-03-05 | 2020-07-17 | 安捷伦科技有限公司 | 长fish探针的合成 |
| CA2901138A1 (en) * | 2013-03-12 | 2014-10-09 | Counsyl, Inc. | Systems and methods for prenatal genetic analysis |
| GB2520763A (en) | 2013-12-02 | 2015-06-03 | Vanadis Diagnostics Ab | Nucleic acid probe and method of detecting genomic fragments |
| GB2520765A (en) * | 2013-12-02 | 2015-06-03 | Vanadis Diagnostics Ab | Multiplex detection of nucleic acids |
| US10174383B2 (en) * | 2014-08-13 | 2019-01-08 | Vanadis Diagnostics | Method of estimating the amount of a methylated locus in a sample |
| GB201507376D0 (en) * | 2015-04-30 | 2015-06-17 | Vanadis Diagnostics Ab | Use of a porous transparent capillary membrane for counting rolling circle amplification products |
| RU2753883C2 (ru) * | 2015-09-18 | 2021-08-24 | Ванадис Дайэгностикс | Набор зондов для анализа образцов днк и способы их использования |
-
2016
- 2016-09-16 RU RU2018113795A patent/RU2753883C2/ru active
- 2016-09-16 EP EP16770570.6A patent/EP3350342B1/en active Active
- 2016-09-16 ES ES20155860T patent/ES2963242T3/es active Active
- 2016-09-16 ES ES16770570T patent/ES2788737T3/es active Active
- 2016-09-16 KR KR1020187006545A patent/KR102753113B1/ko active Active
- 2016-09-16 EP EP20155860.8A patent/EP3670671B1/en active Active
- 2016-09-16 CN CN201680000966.2A patent/CN106536735B/zh active Active
- 2016-09-16 DK DK16770570.6T patent/DK3350342T3/da active
- 2016-09-16 CN CN202010050583.4A patent/CN111154754B/zh active Active
- 2016-09-16 WO PCT/IB2016/055558 patent/WO2017046775A1/en not_active Ceased
- 2016-09-16 PL PL16770570T patent/PL3350342T3/pl unknown
- 2016-09-16 US US15/268,322 patent/US10508300B2/en active Active
- 2016-09-16 JP JP2018506431A patent/JP6785839B2/ja active Active
- 2016-09-16 AU AU2016325100A patent/AU2016325100B2/en active Active
-
2019
- 2019-11-08 US US16/679,098 patent/US10822640B2/en active Active
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2020
- 2020-09-30 US US17/039,490 patent/US11591639B2/en active Active
-
2022
- 2022-04-14 AU AU2022202491A patent/AU2022202491B2/en active Active
-
2023
- 2023-01-20 US US18/099,913 patent/US12378599B2/en active Active
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