MX2022010905A - Analisis secundario incremental de secuencias de acido nucleico. - Google Patents

Analisis secundario incremental de secuencias de acido nucleico.

Info

Publication number
MX2022010905A
MX2022010905A MX2022010905A MX2022010905A MX2022010905A MX 2022010905 A MX2022010905 A MX 2022010905A MX 2022010905 A MX2022010905 A MX 2022010905A MX 2022010905 A MX2022010905 A MX 2022010905A MX 2022010905 A MX2022010905 A MX 2022010905A
Authority
MX
Mexico
Prior art keywords
nucleic acid
alignment
data
reads
mapping
Prior art date
Application number
MX2022010905A
Other languages
English (en)
Inventor
Michael J Carney
Beer Jacobus De
Hsu-Lin Tsao
Partha Mukherjee
Daniel Joseph Tracy
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Illumina Inc filed Critical Illumina Inc
Publication of MX2022010905A publication Critical patent/MX2022010905A/es

Links

Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/12—Computing arrangements based on biological models using genetic models
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B50/00—ICT programming tools or database systems specially adapted for bioinformatics
    • G16B50/30—Data warehousing; Computing architectures

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Biophysics (AREA)
  • Theoretical Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • General Health & Medical Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Molecular Biology (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • General Engineering & Computer Science (AREA)
  • Artificial Intelligence (AREA)
  • Computational Linguistics (AREA)
  • Evolutionary Computation (AREA)
  • General Physics & Mathematics (AREA)
  • Mathematical Physics (AREA)
  • Software Systems (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Data Mining & Analysis (AREA)
  • Computing Systems (AREA)
  • Biomedical Technology (AREA)
  • Biochemistry (AREA)
  • Bioethics (AREA)
  • Databases & Information Systems (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)

Abstract

Métodos, sistemas y aparatos, que incluyen programas informáticos, para realizar un análisis secundario incremental de lecturas de secuencias de ácido nucleico. El método puede incluir (i) obtener primeros datos que describen una pluralidad de primeras lecturas generadas por un dispositivo de secuenciación de ácido nucleico durante un primer intervalo de lectura, (ii) obtener segundos datos que describen una pluralidad de segundas lecturas generadas por el dispositivo de secuenciación de ácido nucleico durante un segundo intervalo de lectura que se realiza después del primer intervalo de lectura, en donde mientras se obtienen los segundos datos: (a) proporcionar, mediante el dispositivo de secuenciación de ácido nucleico, los primeros datos como una entrada a una unidad de mapeo y alineación, (b) recibir, desde la unidad de mapeo y alineación, resultados de alineación, y (c) almacenar los resultados de alineación recibidos, y, después de eso (iii) instruir la unidad de mapeo y alineación para comenzar la alineación de los segundos datos que representan la segunda pluralidad de lecturas para la secuencia de referencia.
MX2022010905A 2020-03-11 2021-03-11 Analisis secundario incremental de secuencias de acido nucleico. MX2022010905A (es)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US202062988374P 2020-03-11 2020-03-11
PCT/US2021/022012 WO2021183833A1 (en) 2020-03-11 2021-03-11 Incremental secondary analysis of nucleic acid sequences

Publications (1)

Publication Number Publication Date
MX2022010905A true MX2022010905A (es) 2022-12-15

Family

ID=75340274

Family Applications (1)

Application Number Title Priority Date Filing Date
MX2022010905A MX2022010905A (es) 2020-03-11 2021-03-11 Analisis secundario incremental de secuencias de acido nucleico.

Country Status (11)

Country Link
US (2) US12404548B2 (es)
EP (1) EP4118656A1 (es)
JP (2) JP7747644B2 (es)
KR (1) KR20220153007A (es)
CN (1) CN115210815A (es)
AU (1) AU2021233015A1 (es)
BR (1) BR112022015194A2 (es)
CA (1) CA3167358A1 (es)
IL (1) IL294741A (es)
MX (1) MX2022010905A (es)
WO (1) WO2021183833A1 (es)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN116230085A (zh) * 2023-03-14 2023-06-06 成都今是科技有限公司 基于并行聚类的核酸测序方法与系统

Family Cites Families (14)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
AR031640A1 (es) 2000-12-08 2003-09-24 Applied Research Systems Amplificacion isotermica de acidos nucleicos en un soporte solido
US9683230B2 (en) 2013-01-09 2017-06-20 Illumina Cambridge Limited Sample preparation on a solid support
US9679104B2 (en) 2013-01-17 2017-06-13 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10068054B2 (en) 2013-01-17 2018-09-04 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10691775B2 (en) 2013-01-17 2020-06-23 Edico Genome, Corp. Bioinformatics systems, apparatuses, and methods executed on an integrated circuit processing platform
US10395758B2 (en) 2013-08-30 2019-08-27 10X Genomics, Inc. Sequencing methods
WO2016149261A1 (en) 2015-03-16 2016-09-22 Personal Genome Diagnostics, Inc. Systems and methods for analyzing nucleic acid
CA2983882C (en) * 2015-05-07 2023-10-03 Scott E. Helgesen Multiprocessor pipeline architecture
US10640763B2 (en) 2016-05-31 2020-05-05 Cellular Research, Inc. Molecular indexing of internal sequences
KR102384832B1 (ko) * 2016-10-07 2022-04-08 일루미나, 인코포레이티드 뉴클레오타이드 서열분석 데이터의 이차 분석을 위한 시스템 및 방법
US20190172553A1 (en) * 2017-11-08 2019-06-06 Koninklijke Philips N.V. Using k-mers for rapid quality control of sequencing data without alignment
WO2019161419A1 (en) 2018-02-16 2019-08-22 Illumina, Inc. Systems and methods for correlated error event mitigation for variant calling
MX2020014030A (es) 2019-05-24 2021-03-09 Illumina Inc Extensión flexible de seed para mapeo genómico de tabla hash.
CN110867211A (zh) * 2019-12-02 2020-03-06 深圳市海普洛斯生物科技有限公司 一种鉴定二代靶向捕获测序样本微生物污染的方法和装置

Also Published As

Publication number Publication date
BR112022015194A2 (pt) 2022-10-11
AU2021233015A1 (en) 2022-07-14
JP2026012680A (ja) 2026-01-27
EP4118656A1 (en) 2023-01-18
US12404548B2 (en) 2025-09-02
US20210285043A1 (en) 2021-09-16
KR20220153007A (ko) 2022-11-17
WO2021183833A1 (en) 2021-09-16
US20250361555A1 (en) 2025-11-27
CN115210815A (zh) 2022-10-18
JP7747644B2 (ja) 2025-10-01
CA3167358A1 (en) 2021-09-16
JP2023519496A (ja) 2023-05-11
IL294741A (en) 2022-09-01

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