MX2022010682A - Methods, compositions, and devices for information storage. - Google Patents
Methods, compositions, and devices for information storage.Info
- Publication number
- MX2022010682A MX2022010682A MX2022010682A MX2022010682A MX2022010682A MX 2022010682 A MX2022010682 A MX 2022010682A MX 2022010682 A MX2022010682 A MX 2022010682A MX 2022010682 A MX2022010682 A MX 2022010682A MX 2022010682 A MX2022010682 A MX 2022010682A
- Authority
- MX
- Mexico
- Prior art keywords
- devices
- methods
- novel
- dna
- compositions
- Prior art date
Links
Classifications
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
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- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07H—SUGARS; DERIVATIVES THEREOF; NUCLEOSIDES; NUCLEOTIDES; NUCLEIC ACIDS
- C07H21/00—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids
- C07H21/04—Compounds containing two or more mononucleotide units having separate phosphate or polyphosphate groups linked by saccharide radicals of nucleoside groups, e.g. nucleic acids with deoxyribosyl as saccharide radical
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P19/00—Preparation of compounds containing saccharide radicals
- C12P19/26—Preparation of nitrogen-containing carbohydrates
- C12P19/28—N-glycosides
- C12P19/30—Nucleotides
- C12P19/34—Polynucleotides, e.g. nucleic acids, oligoribonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
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- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/28—Electrolytic cell components
- G01N27/30—Electrodes, e.g. test electrodes; Half-cells
- G01N27/327—Biochemical electrodes, e.g. electrical or mechanical details for in vitro measurements
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00277—Apparatus
- B01J2219/00497—Features relating to the solid phase supports
- B01J2219/00511—Walls of reactor vessels
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00583—Features relative to the processes being carried out
- B01J2219/00596—Solid-phase processes
-
- B—PERFORMING OPERATIONS; TRANSPORTING
- B01—PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
- B01J—CHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
- B01J2219/00—Chemical, physical or physico-chemical processes in general; Their relevant apparatus
- B01J2219/00274—Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
- B01J2219/00718—Type of compounds synthesised
- B01J2219/0072—Organic compounds
- B01J2219/00722—Nucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2521/00—Reaction characterised by the enzymatic activity
- C12Q2521/10—Nucleotidyl transfering
- C12Q2521/131—Terminal transferase
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2563/00—Nucleic acid detection characterized by the use of physical, structural and functional properties
- C12Q2563/116—Nucleic acid detection characterized by the use of physical, structural and functional properties electrical properties of nucleic acids, e.g. impedance, conductivity or resistance
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2565/00—Nucleic acid analysis characterised by mode or means of detection
- C12Q2565/60—Detection means characterised by use of a special device
- C12Q2565/631—Detection means characterised by use of a special device being a biochannel or pore
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/12—Computing arrangements based on biological models using genetic models
- G06N3/123—DNA computing
-
- G—PHYSICS
- G11—INFORMATION STORAGE
- G11C—STATIC STORES
- G11C13/00—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00
- G11C13/0002—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00 using resistive RAM [RRAM] elements
- G11C13/0009—RRAM elements whose operation depends upon chemical change
- G11C13/0014—RRAM elements whose operation depends upon chemical change comprising cells based on organic memory material
-
- G—PHYSICS
- G11—INFORMATION STORAGE
- G11C—STATIC STORES
- G11C13/00—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00
- G11C13/0002—Digital stores characterised by the use of storage elements not covered by groups G11C11/00, G11C23/00, or G11C25/00 using resistive RAM [RRAM] elements
- G11C13/0009—RRAM elements whose operation depends upon chemical change
- G11C13/0014—RRAM elements whose operation depends upon chemical change comprising cells based on organic memory material
- G11C13/0019—RRAM elements whose operation depends upon chemical change comprising cells based on organic memory material comprising bio-molecules
Abstract
The disclosure provides a novel system of storing information using a charged polymer, e.g., DNA, the monomers of which correspond to a machine-readable code, e.g., a binary code, and which can be synthesized and/or read using a novel nanochip device comprising nanopores; novel methods and devices for synthesizing oligonucleotides in a nanochip format; novel methods for synthesizing DNA in the 3' to 5' direction using topoisomerase; novel methods and devices for reading the sequence of a charged polymer, e.g., DNA, by measuring capacitive variance as the polymer passes through the nanopore; and further provides compounds, compositions, methods and devices useful therein.
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201662301538P | 2016-02-29 | 2016-02-29 | |
US201662415430P | 2016-10-31 | 2016-10-31 |
Publications (1)
Publication Number | Publication Date |
---|---|
MX2022010682A true MX2022010682A (en) | 2022-09-23 |
Family
ID=59743186
Family Applications (2)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
MX2018010388A MX2018010388A (en) | 2016-02-29 | 2017-02-28 | Methods, compositions, and devices for information storage. |
MX2022010682A MX2022010682A (en) | 2016-02-29 | 2018-08-29 | Methods, compositions, and devices for information storage. |
Family Applications Before (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
MX2018010388A MX2018010388A (en) | 2016-02-29 | 2017-02-28 | Methods, compositions, and devices for information storage. |
Country Status (13)
Country | Link |
---|---|
EP (1) | EP3423597A4 (en) |
JP (2) | JP2019512480A (en) |
KR (1) | KR20180123062A (en) |
CN (1) | CN109415766A (en) |
AU (2) | AU2017227608B2 (en) |
BR (1) | BR112018067903A2 (en) |
CA (1) | CA3016037A1 (en) |
IL (1) | IL261424B (en) |
MX (2) | MX2018010388A (en) |
PH (1) | PH12018501843A1 (en) |
RU (2) | RU2765308C2 (en) |
SG (1) | SG11201807334SA (en) |
WO (1) | WO2017151680A2 (en) |
Families Citing this family (24)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US11624725B2 (en) | 2016-01-28 | 2023-04-11 | Roswell Blotechnologies, Inc. | Methods and apparatus for measuring analytes using polymerase in large scale molecular electronics sensor arrays |
JP7080489B2 (en) | 2016-01-28 | 2022-06-06 | ロズウェル バイオテクノロジーズ,インコーポレイテッド | Ultra-parallel DNA sequencer |
CA3053103A1 (en) | 2016-02-09 | 2017-08-17 | Roswell Biotechnologies, Inc. | Electronic label-free dna and genome sequencing |
US10597767B2 (en) | 2016-02-22 | 2020-03-24 | Roswell Biotechnologies, Inc. | Nanoparticle fabrication |
US10438662B2 (en) * | 2016-02-29 | 2019-10-08 | Iridia, Inc. | Methods, compositions, and devices for information storage |
US9829456B1 (en) | 2016-07-26 | 2017-11-28 | Roswell Biotechnologies, Inc. | Method of making a multi-electrode structure usable in molecular sensing devices |
KR102622275B1 (en) | 2017-01-10 | 2024-01-05 | 로스웰 바이오테크놀로지스 인코포레이티드 | Methods and systems for DNA data storage |
CN110520517A (en) | 2017-01-19 | 2019-11-29 | 罗斯威尔生命技术公司 | Solid-state sequencing device including two-dimentional layer material |
US10508296B2 (en) | 2017-04-25 | 2019-12-17 | Roswell Biotechnologies, Inc. | Enzymatic circuits for molecular sensors |
EP3615685A4 (en) | 2017-04-25 | 2021-01-20 | Roswell Biotechnologies, Inc | Enzymatic circuits for molecular sensors |
EP4023764A3 (en) | 2017-05-09 | 2022-09-21 | Roswell Biotechnologies, Inc. | Binding probe circuits for molecular sensors |
US11174512B2 (en) | 2017-05-31 | 2021-11-16 | Molecular Assemblies, Inc. | Homopolymer encoded nucleic acid memory |
WO2018222853A1 (en) * | 2017-05-31 | 2018-12-06 | Molecular Assemblies, Inc. | Homopolymer encoded nucleic acid memory |
US11612873B2 (en) | 2017-05-31 | 2023-03-28 | Molecular Assemblies, Inc. | Homopolymer encoded nucleic acid memory |
EP3676389A4 (en) | 2017-08-30 | 2021-06-02 | Roswell Biotechnologies, Inc | Processive enzyme molecular electronic sensors for dna data storage |
EP3694990A4 (en) * | 2017-10-10 | 2022-06-15 | Roswell Biotechnologies, Inc. | Methods, apparatus and systems for amplification-free dna data storage |
US10936953B2 (en) * | 2018-01-04 | 2021-03-02 | Twist Bioscience Corporation | DNA-based digital information storage with sidewall electrodes |
EP3547315B1 (en) * | 2018-03-26 | 2021-01-27 | IMEC vzw | Method of storing data |
CN113302700A (en) * | 2018-09-07 | 2021-08-24 | 艾瑞迪亚公司 | Improved system and method for writing and reading data stored in polymer |
KR102653412B1 (en) * | 2019-03-29 | 2024-04-02 | 팔로젠 인코포레이티드 | Nanopore devices and bio-synthesis methods using them |
US11655465B1 (en) | 2019-05-02 | 2023-05-23 | Iridia, Inc. | Enzymes and systems for synthesizing DNA |
US11837302B1 (en) | 2020-08-07 | 2023-12-05 | Iridia, Inc. | Systems and methods for writing and reading data stored in a polymer using nano-channels |
CN114196661B (en) * | 2021-11-04 | 2023-08-11 | 北京全式金生物技术股份有限公司 | Recombinant topoisomerase and application thereof in construction of sequencing library |
CN117079689A (en) * | 2022-05-10 | 2023-11-17 | 密码子(杭州)科技有限公司 | Molecular module assembling device and molecular module assembling method |
Family Cites Families (13)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5681702A (en) * | 1994-08-30 | 1997-10-28 | Chiron Corporation | Reduction of nonspecific hybridization by using novel base-pairing schemes |
JP4447664B2 (en) * | 1997-06-12 | 2010-04-07 | スローン―ケタリング・インスティテュート・フォー・キャンサー・リサーチ | Covalent binding of DNA strands to RNA strands catalyzed by vaccinia topoisomerase |
CN101173276A (en) * | 2000-12-08 | 2008-05-07 | 茵维特罗根公司 | Compositions and methods for rapidly generating recombinant nucleic acid molecules |
US20040001371A1 (en) * | 2002-06-26 | 2004-01-01 | The Arizona Board Of Regents On Behalf Of The University Of Arizona | Information storage and retrieval device using macromolecules as storage media |
US7390622B2 (en) * | 2003-10-16 | 2008-06-24 | Hai Kang Life Corporation Limited | Apparatus and methods for detecting nucleic acid in biological samples |
WO2005058479A2 (en) * | 2003-12-17 | 2005-06-30 | Praecis Pharmaceuticals, Inc. | Methods for synthesis of encoded libraries |
WO2006122317A2 (en) * | 2005-05-11 | 2006-11-16 | The Regents Of The University Of California | Nanofabrication processes and devices for the controlled assembly of functionalized nanostructures |
US20060286024A1 (en) * | 2005-06-15 | 2006-12-21 | Baker R Terry K | Synthesis and cleaving of carbon nanochips |
EP3824902A1 (en) * | 2007-09-28 | 2021-05-26 | Portola Pharmaceuticals, Inc. | Antidotes for factor xa inhibitors and methods of using the same |
CA2750879C (en) * | 2009-01-30 | 2018-05-22 | Oxford Nanopore Technologies Limited | Adaptors for nucleic acid constructs in transmembrane sequencing |
US20140051068A1 (en) * | 2010-09-07 | 2014-02-20 | The Regents Of The University Of California | Control of dna movement in a nanopore at one nucleotide precision by a processive enzyme |
CN107828877A (en) * | 2012-01-20 | 2018-03-23 | 吉尼亚科技公司 | Molecular Detection and sequencing based on nano-pore |
US9322820B2 (en) * | 2013-03-14 | 2016-04-26 | Wisconsin Alumni Research Foundation | System and apparatus for nanopore sequencing |
-
2017
- 2017-02-28 MX MX2018010388A patent/MX2018010388A/en unknown
- 2017-02-28 WO PCT/US2017/020044 patent/WO2017151680A2/en active Application Filing
- 2017-02-28 RU RU2018134197A patent/RU2765308C2/en active
- 2017-02-28 AU AU2017227608A patent/AU2017227608B2/en active Active
- 2017-02-28 KR KR1020187028197A patent/KR20180123062A/en not_active Application Discontinuation
- 2017-02-28 CN CN201780025380.6A patent/CN109415766A/en active Pending
- 2017-02-28 JP JP2018546548A patent/JP2019512480A/en active Pending
- 2017-02-28 BR BR112018067903-8A patent/BR112018067903A2/en not_active Application Discontinuation
- 2017-02-28 EP EP17760661.3A patent/EP3423597A4/en active Pending
- 2017-02-28 CA CA3016037A patent/CA3016037A1/en active Pending
- 2017-02-28 RU RU2022101599A patent/RU2022101599A/en unknown
- 2017-02-28 SG SG11201807334SA patent/SG11201807334SA/en unknown
-
2018
- 2018-08-28 IL IL261424A patent/IL261424B/en unknown
- 2018-08-29 MX MX2022010682A patent/MX2022010682A/en unknown
- 2018-08-29 PH PH12018501843A patent/PH12018501843A1/en unknown
-
2022
- 2022-03-22 JP JP2022045490A patent/JP2022095695A/en active Pending
- 2022-11-09 AU AU2022268325A patent/AU2022268325A1/en active Pending
Also Published As
Publication number | Publication date |
---|---|
PH12018501843A1 (en) | 2019-05-15 |
MX2018010388A (en) | 2019-03-06 |
CN109415766A (en) | 2019-03-01 |
WO2017151680A3 (en) | 2017-10-12 |
EP3423597A4 (en) | 2020-03-04 |
RU2022101599A (en) | 2022-02-25 |
WO2017151680A2 (en) | 2017-09-08 |
RU2018134197A (en) | 2020-04-01 |
EP3423597A2 (en) | 2019-01-09 |
CA3016037A1 (en) | 2017-09-08 |
AU2017227608A1 (en) | 2018-09-27 |
SG11201807334SA (en) | 2018-09-27 |
AU2022268325A1 (en) | 2022-12-15 |
JP2022095695A (en) | 2022-06-28 |
RU2765308C2 (en) | 2022-01-28 |
IL261424B (en) | 2021-08-31 |
AU2017227608B2 (en) | 2023-06-01 |
JP2019512480A (en) | 2019-05-16 |
BR112018067903A2 (en) | 2019-04-16 |
KR20180123062A (en) | 2018-11-14 |
IL261424A (en) | 2018-10-31 |
RU2018134197A3 (en) | 2021-07-02 |
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