KR20160025360A - Novel Atractylodes mottle virus gene from Atractylodes japonica plant - Google Patents

Novel Atractylodes mottle virus gene from Atractylodes japonica plant Download PDF

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KR20160025360A
KR20160025360A KR1020140112527A KR20140112527A KR20160025360A KR 20160025360 A KR20160025360 A KR 20160025360A KR 1020140112527 A KR1020140112527 A KR 1020140112527A KR 20140112527 A KR20140112527 A KR 20140112527A KR 20160025360 A KR20160025360 A KR 20160025360A
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KR101613456B1 (en
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문제선
김성욱
임승모
자오푸메이
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한국생명공학연구원
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Abstract

The present invention relates to a novel Atractylodes mottle virus gene found in Atractylodes ovata (Thunb.) DC. More specifically, the present invention relates to an Atractylodes mottle virus gene comprising a base sequence represented by sequence number 1, a recombinant vector comprising the Atractylodes mottle virus gene, and a host cell transformed by the recombinant vector. According to the present invention, the gene of the present invention can contribute to distribution of disease-free host plants including Atractylodes ovata (Thunb.) DC. and also to quality improvement.

Description

삽주 식물 유래 신규한 삽주 모틀 바이러스 유전자{Novel Atractylodes mottle virus gene from Atractylodes japonica plant}(Novel Atractylodes mottle virus gene from Atractylodes japonica plant)

본 발명은 삽주 식물에서 발견된 신규한 삽주 모틀 바이러스 유전자에 관한 것으로, 더욱 상세하게는 삽주 식물 유래의 서열번호 1의 염기서열을 포함하는 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자, 상기 삽주 모틀 바이러스 유전자를 포함하는 재조합 벡터 및 상기 재조합 벡터로 형질전환된 숙주세포에 관한 것이다.More particularly, the present invention relates to a gene for an extract of Atractylodes mottle virus comprising the nucleotide sequence of SEQ ID NO: 1 derived from a ssp. Plant, And a host cell transformed with the recombinant vector.

기후 온난화에 따른 생태계 변화, 식물과 바이러스의 진화 및 변이, 그리고 농산물 교역 확대에 따라 돌발 바이러스 및 새로운 바이러스 병의 출현 및 위험도는 점차 높아지고 있다. 지금까지 보고된 식물 바이러스는 전 세계적으로 약 1,000여 종이 알려져 있으며, 아직까지도 여러 가지 식물에서 새로운 바이러스들이 지속적으로 보고되고 있다. 현재 우리나라에서는 약 100여 종의 바이러스가 여러 가지 식물에서 보고되어 있다. 그러나 발생하는 바이러스에 대한 상세한 조사가 일부 작물에서만 이루어졌고, 대부분의 작물에서는 단편적인 조사만 이루어져 있다. 그리하여 아직까지 많은 주요 작물에서 어떤 바이러스 병이 발생하고 있는지 구체적으로 파악되지 못하고 있는 실정이다.The emergence and risk of emergent viruses and new viral diseases are increasing gradually due to ecosystem changes due to climate warming, evolution and variation of plants and viruses, and increased trade in agricultural products. About 1,000 plant viruses have been reported so far worldwide, and new viruses are still reported in various plants. Currently, about 100 viruses have been reported in various plants in Korea. However, detailed investigations of the viruses have been carried out only in some crops, and most crops are only fragmented. Thus, it is not yet clear which viral diseases are occurring in many major crops.

식물병이란 식물기주에 대한 병원균 또는 환경요인의 지속적인 영향의 결과로 나타난 기주세포와 조직의 기능이상으로서, 식물의 형태, 생리 등에 비정상적인 변화가 나타난 상태를 말하며, 그 결과 나타난 경제적 가치의 감소를 포함하기도 한다. 이러한 식물병을 일으키는 원인으로는 곰팡이(Fungi), 박테리아(Bacteria), 선충(Nematode), 마이코플라스마(Mycoplasma), 원생동물(Protozoa) 및 바이러스(Virus)가 있다. 그러나, 바이러스는 크기가 1㎛ 보다 작은 병원체로 광학현미경으로도 그 실체를 관찰할 수 없고, 전자현미경을 필요로 하기 때문에, 육안으로 식물체에 발생한 바이러스를 진단하는 것은 곤란하다. 이에 따라 바이러스를 진단하기 위한 다양한 방법들이 개발되어 사용되고 있다. 특히, 삽주 식물에 병을 일으키는 바이러스에 대한 연구가 필요한 실정이다.Plant diseases are abnormalities of the host cells and tissues that result from the continued influences of pathogens or environmental factors on the plant host, including abnormalities in plant morphology, physiology, etc., resulting in a reduction in the resulting economic value It is also said. Causes of these plant diseases include fungi, bacteria, Nematode, Mycoplasma, protozoa and viruses. However, the virus is a pathogen having a size of less than 1 占 퐉 and its substance can not be observed even with an optical microscope, and since it requires an electron microscope, it is difficult to diagnose a virus that has developed in a plant with the naked eye. Accordingly, various methods for diagnosing viruses have been developed and used. In particular, it is necessary to study viruses that cause diseases in sow plants.

한편, 한국등록특허 제10-0961156호에는 식물 바이러스를 검출하기 위한 프로브 세트가 개시되어 있고, 한국등록특허 제10-1153458호에서는 INSV 및 TSWV의 동시 진단용 듀플렉스 프라이머 및 이의 용도가 개시되어 있으나, 본 발명에서와 같이 '삽주 식물 유래 신규한 삽주 모틀 바이러스 유전자'에 대해서는 밝혀진 바가 없다.Korean Patent No. 10-0961156 discloses a probe set for detecting plant virus. Korean Patent No. 10-1153458 discloses a duplex primer for simultaneous diagnosis of INSV and TSWV and its use, As in the case of the present invention, there has been no report on a novel transgenic mosquito virus gene derived from a ssp. Plant.

본 발명은 상기와 같은 요구에 의해 도출된 것으로서, 본 발명자는 식물 바이러스가 감염되었을 것으로 의심되는 138개 식물 샘플을 대상으로 cDNA 라이브러리를 제작하였고, 이의 콘티그들을 근거로 제작된 프라이머 세트의 PCR 결과를 통해 염기서열을 확보하였는데, 이는 최종적으로 삽주에서 병을 유발하는 약 8.9 kb의 신규한 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자임을 확인함으로써, 본 발명을 완성하였다.The present invention has been made in view of the above-mentioned needs. The present inventors prepared a cDNA library of 138 plant samples suspected of being infected with a plant virus, and obtained PCR results of the primer set based on the contaminants thereof , Confirming that the gene is a novel Atractylodes mottle virus gene of about 8.9 kb which eventually causes disease in the shoot. Thus, the present invention has been completed.

본 발명의 목적을 달성하기 위하여, 본 발명은 삽주 식물 유래의 서열번호 1의 염기서열을 포함하는 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자를 제공한다.In order to achieve the object of the present invention, the present invention provides an Atractylodes mottle virus gene comprising the nucleotide sequence of SEQ ID NO: 1 derived from a ssp. Plant.

또한, 본 발명은 상기 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자를 포함하는 재조합 벡터를 제공한다.The present invention also provides a recombinant vector comprising the Atractylodes mottle virus gene.

또한, 본 발명은 상기 재조합 벡터로 형질전환된 숙주세포를 제공한다.The present invention also provides a host cell transformed with the recombinant vector.

본 발명은 바이러스로 인해 병증은 나타내지만, 그 원인 바이러스가 아직 밝혀지지 않았던 삽주 식물로부터 신규한 삽주 모틀 바이러스 유전자를 분리한 내용에 관한 것이다. 본 발명의 삽주 모틀 바이러스 유전자를 이용하여 바이러스 감염 진단이 가능하기 때문에 국내 농작물에 발생하는 바이러스 병 발생 양상을 모니터링 또는 조사에 투입하여 병 발생 예찰에 활용할 수 있고, 특히 삽주를 포함하는 숙주 식물체에 발생하는 병해에 대한 실체를 밝히고, 삽주를 포함하는 숙주 식물 무병주 보급 및 품질 향상에 기여할 수 있다.The present invention relates to the isolation of a novel scrapie mutant virus gene from a scion plant whose pathology is due to the virus but whose causative virus has yet to be revealed. Since the viral infection can be diagnosed using the viral genome of the present invention, the viral disease occurrence pattern in domestic crops can be used for monitoring or investigation to be used for the disease occurrence observation. Especially, And can contribute to improving the quality of the host plant and improving the quality of the host plant.

본 발명의 목적을 달성하기 위하여, 본 발명은 삽주 식물 유래의 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자를 제공한다.In order to achieve the object of the present invention, the present invention provides an Atractylodes mottle virus gene derived from a ssp. Plant.

상기 삽주 식물 유래의 삽주 모틀 바이러스 유전자는 서열번호 1의 염기서열로 이루어질 수 있으나, 이에 제한되지 않는다. 또한, 상기 염기 서열의 상동체가 본 발명의 범위 내에 포함된다. 구체적으로, 상기 유전자는 서열번호 1의 염기 서열과 각각 70% 이상, 더욱 바람직하게는 80% 이상, 더 더욱 바람직하게는 90% 이상, 가장 바람직하게는 95% 이상의 서열 상동성을 가지는 염기 서열을 포함할 수 있다. 폴리뉴클레오티드에 대한 "서열 상동성의 %"는 두 개의 최적으로 배열된 서열과 비교 영역을 비교함으로써 확인되며, 비교 영역에서의 폴리뉴클레오티드 서열의 일부는 두 서열의 최적 배열에 대한 참고 서열(추가 또는 삭제를 포함하지 않음)에 비해 추가 또는 삭제(즉, 갭)를 포함할 수 있다.The sister mouse virus gene derived from the ssp. Plant may be composed of the nucleotide sequence of SEQ ID NO: 1, but is not limited thereto. In addition, homologues of the nucleotide sequences are included within the scope of the present invention. Specifically, the gene has a nucleotide sequence having a sequence homology of 70% or more, more preferably 80% or more, still more preferably 90% or more, and most preferably 95% or more, with the nucleotide sequence of SEQ ID NO: 1 . "% Of sequence homology to polynucleotides" is ascertained by comparing the comparison region with two optimally aligned sequences, and a portion of the polynucleotide sequence in the comparison region is the reference sequence for the optimal alignment of the two sequences (I. E., A gap) relative to the < / RTI >

또한, 본 발명은 상기 삽주 모틀 바이러스 유전자를 포함하는 재조합 벡터를 제공한다.In addition, the present invention provides a recombinant vector comprising the S. cerevisiae virus gene.

용어 "재조합"은 세포가 이종의 핵산을 복제하거나, 상기 핵산을 발현하거나 또는 펩티드, 이종의 펩티드 또는 이종의 핵산에 의해 암호된 단백질을 발현하는 세포를 지칭하는 것이다. 재조합 세포는 상기 세포의 천연 형태에서는 발견되지 않는 유전자 또는 유전자 절편을, 센스 또는 안티센스 형태 중 하나로 발현할 수 있다. 또한 재조합 세포는 천연 상태의 세포에서 발견되는 유전자를 발현할 수 있으며, 그러나 상기 유전자는 변형된 것으로서 인위적인 수단에 의해 세포 내 재도입된 것이다.The term "recombinant" refers to a cell in which a cell replicates a heterologous nucleic acid, expresses the nucleic acid, or expresses a protein encoded by a peptide, heterologous peptide or heterologous nucleic acid. The recombinant cell can express a gene or a gene fragment that is not found in the natural form of the cell in one of the sense or antisense form. In addition, the recombinant cell can express a gene found in a cell in its natural state, but the gene has been modified and reintroduced intracellularly by an artificial means.

본 발명에서, 상기 삽주 모틀 바이러스 유전자 서열은 재조합 벡터 내로 삽입될 수 있다. 용어 "재조합 벡터"는 세균 플라스미드, 파아지, 효모 플라스미드, 식물 세포 바이러스, 포유동물 세포 바이러스, 또는 다른 벡터를 의미한다. 재조합 벡터는 바람직하게는 식물 발현 벡터이다.In the present invention, the S. cerevisiae virus gene sequence can be inserted into a recombinant vector. The term "recombinant vector" means a bacterial plasmid, a phage, a yeast plasmid, a plant cell virus, a mammalian cell virus, or other vector. The recombinant vector is preferably a plant expression vector.

대체로, 임의의 플라스미드 및 벡터는 숙주 내에서 복제 및 안정화할 수 있다면 사용될 수 있다. 상기 발현 벡터의 중요한 특성은 복제 원점, 프로모터, 마커 유전자 및 번역 조절 요소 (translation control element)를 가지는 것이다.In principle, any plasmid and vector can be used if it can replicate and stabilize within the host. An important characteristic of the expression vector is that it has a replication origin, a promoter, a marker gene and a translation control element.

삽주 식물 유래의 삽주 모틀 바이러스 유전자 서열 및 적당한 전사/번역 조절 신호를 포함하는 발현 벡터는 당업자에 주지된 방법에 의해 구축될 수 있다. 상기 방법은 시험관 내 재조합 DNA 기술, DNA 합성 기술 및 생체 내 재조합 기술 등을 포함한다. 상기 DNA 서열은 mRNA 합성을 이끌기 위해 발현 벡터 내의 적당한 프로모터에 효과적으로 연결될 수 있다. 또한 발현 벡터는 번역 개시 부위로서 리보좀 결합 부위 및 전사 터미네이터를 포함할 수 있다.Expression vectors containing the viral vector gene sequences and suitable transcription / translation control signals from the vet plant can be constructed by methods known to those skilled in the art. Such methods include in vitro recombinant DNA technology, DNA synthesis techniques, and in vivo recombination techniques. The DNA sequence can be effectively linked to appropriate promoters in the expression vector to drive mRNA synthesis. The expression vector may also include a ribosome binding site and a transcription terminator as a translation initiation site.

발현 벡터는 바람직하게는 하나 이상의 선택성 마커를 포함할 것이다. 상기 마커는 통상적으로 화학적인 방법으로 선택될 수 있는 특성을 갖는 핵산 서열로, 형질전환된 세포를 비형질전환 세포로부터 구별할 수 있는 모든 유전자가 이에 해당된다. 그 예로는 글리포세이트(glyphosate) 또는 포스피노트리신(phosphinothricin)과 같은 제초제 저항성 유전자, 카나마이신(kanamycin), G418, 블레오마이신(Bleomycin), 하이그로마이신(hygromycin), 클로람페니콜(chloramphenicol)과 같은 항생제 내성 유전자, aadA 유전자 등이 있으나, 이에 한정되는 것은 아니다.The expression vector will preferably comprise one or more selectable markers. The marker is typically a nucleic acid sequence having a property that can be selected by a chemical method, and includes all genes capable of distinguishing a transformed cell from a non-transformed cell. Examples include herbicide resistance genes such as glyphosate or phosphinothricin, antibiotics such as kanamycin, G418, Bleomycin, hygromycin, chloramphenicol, Resistant gene, aadA gene, and the like, but are not limited thereto.

본 발명에 따른 식물 발현 벡터에서, 프로모터는 CaMV 35S, 액틴, 유비퀴틴, pEMU, MAS 또는 히스톤 프로모터일 수 있으나, 이에 제한되지 않는다. "프로모터"란 용어는 구조 유전자로부터의 DNA 업스트림의 영역을 의미하며 전사를 개시하기 위하여 RNA 폴리머라아제가 결합하는 DNA 분자를 말한다. "식물 프로모터"는 식물 세포에서 전사를 개시할 수 있는 프로모터이다. "구성적(constitutive) 프로모터"는 대부분의 환경 조건 및 발달 상태 또는 세포 분화하에서 활성이 있는 프로모터이다. 형질전환체의 선택이 각종 단계에서 각종 조직에 의해서 이루어질 수 있기 때문에 구성적 프로모터가 본 발명에서 바람직할 수 있다. 따라서, 구성적 프로모터는 선택 가능성을 제한하지 않는다.In the plant expression vector according to the present invention, the promoter may be CaMV 35S, actin, ubiquitin, pEMU, MAS or histone promoter, but is not limited thereto. The term "promoter " refers to a region of DNA upstream from a structural gene and refers to a DNA molecule to which an RNA polymerase binds to initiate transcription. A "plant promoter" is a promoter capable of initiating transcription in plant cells. A "constitutive promoter" is a promoter that is active under most environmental conditions and developmental conditions or cell differentiation. Constructive promoters may be preferred in the present invention because the choice of transformants can be made by various tissues at various stages. Thus, constitutive promoters do not limit selectivity.

본 발명에 따른 식물 발현 벡터에서, 터미네이터는 통상의 터미네이터를 사용할 수 있으며, 그 예로는 노팔린 신타아제 (NOS), 벼 α-아밀라아제 RAmy1 A 터미네이터, 파세올린 (phaseoline) 터미네이터, 아그로박테리움 튜머파시엔스 (Agrobacterium tumefaciens)의 옥토파인 (Octopine) 유전자의 터미네이터 등이 있으나, 이에 한정되는 것은 아니다.In the plant expression vector according to the present invention, the terminator can be a conventional terminator such as nopaline synthase (NOS), rice alpha amylase RAmy1 A terminator, phaseoline terminator, Agrobacterium tumefaci And the terminator of the Octopine gene of Agrobacterium tumefaciens , but is not limited thereto.

또한, 본 발명은 상기 재조합 벡터로 형질전환된 숙주세포를 제공한다.The present invention also provides a host cell transformed with the recombinant vector.

본 발명의 벡터를 원핵세포에 안정되면서 연속적으로 클로닝 및 발현시킬 수 있는 숙주세포는 당업계에 공지된 어떠한 숙주세포도 이용할 수 있으며, 예컨대, E. coli JM109, E. coli BL21, E. coli RR1, E. coli LE392, E. coli B, E. coli X 1776, E. coli W3110, 바실러스 서브틸리스, 바실러스 츄린겐시스와 같은 바실러스 속 균주, 그리고 살모넬라 티피무리움, 세라티아 마르세슨스 및 다양한 슈도모나스 종과 같은 장내균과 균주 등이 있다.Any host cell known in the art may be used as the host cell capable of continuously cloning and expressing the vector of the present invention in a stable and prokaryotic cell, for example, E. coli JM109, E. coli BL21, E. coli RR1 , E. coli LE392, E. coli B, E. coli X 1776, E. coli W3110, Bacillus subtilis, Bacillus tulifene, and Salmonella typhimurium, Serratia marcesensus and various Pseudomonas species And enterobacteria and strains such as the species.

또한, 본 발명의 벡터를 진핵 세포에 형질전환시키는 경우에는 숙주세포로서, 효모(Saccharomyce cerevisiae), 곤충세포, 사람세포 (예컨대, CHO 세포주 (Chinese hamster ovary), W138, BHK, COS-7, 293, HepG2, 3T3, RIN 및 MDCK 세포주) 및 식물세포 등이 이용될 수 있다. 숙주세포는 바람직하게는 식물세포이다.When the vector of the present invention is transformed into eukaryotic cells, yeast (Saccharomyce cerevisiae), insect cells, human cells (e.g., Chinese hamster ovary, W138, BHK, COS-7, 293 , HepG2, 3T3, RIN and MDCK cell lines) and plant cells. The host cell is preferably a plant cell.

본 발명의 벡터를 숙주세포 내로 운반하는 방법은, 숙주 세포가 원핵 세포인 경우, CaCl2 방법, 하나한 방법(Hanahan, D., J. Mol. Biol., 166:557-580(1983)) 및 전기천공 방법 등에 의해 실시될 수 있다. 또한, 숙주세포가 진핵세포인 경우에는, 미세주입법, 칼슘포스페이트 침전법, 전기천공법, 리포좀-매개 형질감염법, DEAE-덱스트란 처리법, 및 유전자 밤바드먼트 등에 의해 벡터를 숙주세포 내로 주입할 수 있다.
The method of delivering the vector of the present invention into a host cell can be carried out by the CaCl 2 method, one method (Hanahan, D., J. MoI. Biol., 166: 557-580 (1983)) when the host cell is a prokaryotic cell, And an electric drilling method or the like. When the host cell is a eukaryotic cell, the vector is injected into the host cell by microinjection, calcium phosphate precipitation, electroporation, liposome-mediated transfection, DEAE-dextran treatment, gene bombardment or the like .

이하, 본 발명을 실시예에 의해 상세히 설명한다. 단, 하기 실시예는 본 발명을 예시하는 것일 뿐, 본 발명의 내용이 하기 실시예에 한정되는 것은 아니다.
Hereinafter, the present invention will be described in detail with reference to examples. However, the following examples are illustrative of the present invention, and the present invention is not limited to the following examples.

실험방법Experimental Method

1.One. 샘플의 채집 및 총 Sample collection and total RNARNA 추출 extraction

식물 바이러스가 감염되었을 것으로 의심되는 138개 식물 샘플을 채집하였고, 모든 샘플을 각각 액체 질소를 이용하여 마쇄하였다. 마쇄한 모든 샘플은 초저온에서 보관하였다. 마쇄한 각각의 샘플을 동량으로 섞은 후 총 RNA를 추출하였으며, 총 RNA 추출은 트리 용액(Tri Reagent, MRC)을 이용하였다.
138 plant samples suspected of being infected with plant viruses were collected and all samples were each ground using liquid nitrogen. All samples were stored at cryogenic temperatures. Total RNA was extracted after mixing the same amount of each sample in the same amount. Total RNA extraction was performed with Tri Reagent (MRC).

2. 리보솜 2. Ribosome RNARNA 제거, 이중 가닥  Removal, double strand cDNAcDNA 합성, 라이브러리 제작 및 시퀀싱 Synthesis, library creation and sequencing

추출된 총 RNA에서 Ribo-ZeroTM Magnetic Kit (plant leaf) (Epicentre)를 이용하여 리보솜 RNA를 제거하였다. 준비된 RNA는 짧은 단편으로 파쇄한 후, 이중 가닥 cDNA로 합성하였고, 합성된 이중 가닥 cDNA는 말단 수정(end-repair)하여 라이브러리 제작에 요구되는 클로닝을 위해서 어댑터(adapter)를 붙였다. 이러한 일련의 과정은 TrueqRNA 샘플 프렙 키트 (Illumina)를 이용하여 진행하였다. BluePippin™ 2% 아가로스 겔 카세트(Sage Science)를 이용하여 정제된 적당한 크기의 삽입 DNA(insert DNA)를 PCR 증폭을 위해서 선발하였다. 최종적으로 라이브러리 제작에 적합한 삽입 DNA의 크기 및 양/질을 Agilent 2100 BioAnalyzer 2100 (Agilent Technologies)를 이용하여 측정하였다. 라이브러리 제작이 완성되었으며, 라이브러리 절편 크기는 대략 350-450bp라는 것을 확인하였다. Illumina HiSeq2500을 이용하여 라이브러리를 시퀀싱 하였으며, 페어-엔드 시퀀싱(paired-end sequencing) 방법을 이용하여 약 40Gbp의 로우 데이터(raw data)를 생성하였다.
Ribosomal RNA was removed from the extracted total RNA using Ribo-Zero ™ Magnetic Kit (plant leaf) (Epicenter). The prepared RNA was disrupted with a short fragment and then synthesized with double-stranded cDNA. The synthesized double-stranded cDNA was end-repaired and an adapter was attached for the cloning required for library production. This series of procedures was performed using the TrueqRNA sample prep kit (Illumina). Inserted DNA (insert DNA) of appropriate size purified using BluePippin ™ 2% agarose gel cassette (Sage Science) was selected for PCR amplification. Finally, the size and quantity / quality of the inserted DNA suitable for library production were measured using an Agilent 2100 BioAnalyzer 2100 (Agilent Technologies). The library production was completed, and the size of the library segment was confirmed to be approximately 350-450bp. The library was sequenced using Illumina HiSeq2500 and raw data was generated at about 40 Gbp using a paired-end sequencing method.

3. 3. 시퀀싱한Sequenced 로우low 데이터( data( rawraw datadata )의 가공 및 식물 바이러스 관련 콘티그() And plant virus-related contig ( contigcontig )의 제작) Production

로우 데이터에서 양질의 데이터를 선발한 후, 식물 바이러스 관련 리드(reads)를 확보하여 콘티그를 만들었다. 이러한 일련의 과정은 데노보 합성 전사체 분석(de novo transcriptome analysis, SG-de novo Assembler) 방법을 통해서 진행되었다. 식물 바이러스 관련 염기서열을 갖는 약 7,000여개의 콘티그를 확보하였다. 콘티그의 길이가 너무 짧거나(<500bp), 바이러스 관련 데이터베이스(DataBase)에서 비교했을 때 적용범위(coverage)가 낮은 데이터는 제거하여 최종 약 700여개의 콘티그를 확보하였다.
After selecting high-quality data from low-level data, we obtained plant virus-related readings and created contig. This process was carried out using de novo transcriptome analysis (SG-de novo assembler). Approximately 7,000 contigs with plant virus-related sequences were obtained. When the length of the conti was too short (<500 bp), data with low coverage was removed when compared with the virus database (DataBase), and about 700 contigs were finally obtained.

4. 4. 프라이머primer 제작 및 전체 지놈 규명 Fabrication and identification of whole genome

바이러스 관련 데이터베이스(DataBase)에서 비교했을 때, 약 85-90% 이상의 상동성을 보이는 콘티그를 제거하여 약 150 여개의 콘티그를 확보하였고, 이들 각각을 데이터베이스를 통해서 가장 상동성이 높은 바이러스를 확인하였으며, 같은 바이러스에 높은 상동성을 보이는 콘티그들을 그룹으로 각각 만들었다. 각각의 그룹에 속하는 콘티그들은 해당 식물 바이러스 게놈을 레퍼런스 시퀀스(reference sequence)로 해서 정렬하여 그 위치를 확인하였다.When compared with the virus-related database (DataBase), about 150 to 90 contigues were obtained by removing the contigus that showed about 85-90% or more homology. We confirmed the most homologous virus through each database, They were grouped into two groups, each of which had high homology to the same virus. The contigs belonging to each group aligned their plant viral genome as a reference sequence and confirmed their position.

이들 콘티그의 염기서열을 바탕으로 프라이머를 제작하였고, 제작된 프라이머를 이용하여 138개의 식물 샘플을 대상으로 PCR을 수행하였다. PCR 결과는 아가로스 겔 전기영동을 통해서 밴드를 확인하거나 밴드가 확인된 PCR 산물은 시퀀싱하여 염기서열을 확인하였다. 콘티그를 근거로 제작된 프라이머 세트의 PCR 결과를 통해서 얻어진 염기서열을 바탕으로 다시 프라이머를 제작하여 추가의 염기서열을 확보하였다.
Based on the nucleotide sequences of these contigs, primers were prepared and PCR was performed on 138 plant samples using the primers. The PCR results were confirmed by agarose gel electrophoresis or by sequencing of the banded PCR products. Based on the nucleotide sequence obtained from the PCR result of the primer set based on the contig, a primer was further prepared to obtain an additional base sequence.

실시예Example 1. 새로운 식물 바이러스의 염기서열 동정 1. Identification of the nucleotide sequence of a new plant virus

콘티그들을 근거로 제작된 프라이머 세트의 PCR 결과를 통해서 얻어진 염기서열을 통해 최종적으로 삽주에서 신종으로 예상되는 식물 바이러스의 전체 염기서열 정보를 규명하였는데(서열번호 1), 게놈 정보는 약 8.9 kb의 단일-가닥 RNA 게놈((+) single-stranded RNA genome)이며, 이 바이러스의 이름을 삽주 모틀 바이러스(Atractylodes mottle virus)로 명명하였다. 기존에 알려진 바이러스 유전자 대비 최대 염기서열 동일성(identity)은 69%였다.(SEQ ID NO: 1), the genome information was confirmed to be a single of about 8.9 kb (SEQ ID NO: 1), and the nucleotide sequence of the primer set Stranded RNA genome, and the name of the virus was named as Atractylodes mottle virus. The maximum nucleotide sequence identity to existing viral genes was 69%.

<110> Korea Research Institute of Bioscience and Biotechnology <120> Novel Atractylodes mottle virus gene from Atractylodes japonica plant <130> PN14233 <160> 1 <170> KopatentIn 2.0 <210> 1 <211> 8881 <212> DNA <213> Atractylodes mottle virus <400> 1 ggataaacaa cattctcatg ccatatattg aacaatagaa atatcgttta atatacgcac 60 aatgtctcta acttaccgga gcccattgga agagaatctt ggagcatatg attcaaccgt 120 gcaagcagct attgccagca catctgcaaa ccactaccgg gaggctgaag cggctaattt 180 ccagtacttc aatttccatt tgcgaccaga agcaaagaaa cacctaattg aagcagggat 240 ctaccttagc cccttctccg ctgtgcctca ctcccatcca gcttgtaaaa cattggaaaa 300 ccatttactg tacaatgttt tacccaaatt aatagataat agattttatt ttgtaggaat 360 taagaatcat aagttagatc tactaaaaac gcgcaattca agtttaagta ctataagtca 420 gataaacagg tatgtcacca gtgctgacaa agcacgttac ggctcagacc tggtccgagt 480 atcaagtgat gaacatgtct gcattgctag gcacaagttt gaattgtcta aaccaacttt 540 gcaggagttg gtaccgcgtt tgcaattagt caaccatgac tacctctttc tgcacgacga 600 gctgcattac tggagtccta aagctttaat aactttccta gaggtgttga aacccaaagt 660 aatgtatgca acgttggttt accctccaga actgctggct gggtcaaaat actccctgaa 720 taaatggtgt tatactttta aggtcttcag gcgagactta ctgttttatc ccgatggcgt 780 catgtgcgag ggttatcaac aaccgttaaa gggtggttat ttgttgcgtg ccaataagat 840 cattttgaat aacggtgatg tctacatggt tgatgttatc catagcaaat tcgctcatca 900 tcttgtgtcc atcacgcggg gtgagttagc tgcgaacact gtgcgatcat ttggaccttt 960 tgaagcaacc agcacacgtg ggcttgaacc cctactcagg aacgtgcaac attgtttccc 1020 cgtatcatac tctgtggtct caaagattta caggtatctc aacacgctca agaaacctga 1080 tgcacagtcg gctatggcca aattgagtca actcctagaa gagcctagtg gtttagaaat 1140 gaaatttcta aaagactttg caaatctcgt cattaacact agtgggatta acactatgat 1200 caagcctgaa cgcttgcgta tgttttttgg gaagtggctt aaagagttac caactatcat 1260 ttcttcccaa ttatcacttg tgcaaacagt gagtctagat gattttgtga catacttagc 1320 cccatttacc ttcgaggtac aattgggtga agtccattat gatcacaaag agatactctc 1380 catgtttgat atggccgagt gcgcagagga aatggacgta cctgatttga tggaccgctt 1440 caccctcggg aaatccgcca tgctcgcaga tagagtgcca caacctgtca gtgctgatct 1500 attcaatgtg ttcagaaaaa caagcacttt gctaaaggta cctcttccca tctttgcacg 1560 ttacctagta tgtgaaataa catacatgct ggatccgctc tgtcgggttg tgagcctcag 1620 tgtcatcagg gaagctattg cacttcgtct gattcgcggt agcccgatga tcctcccgct 1680 gcagcaattg ctcaatctta tacgttctgg gccattattg cgggattgtg tcaataaggt 1740 cattagtcac tatgccaggc tactaactgt gttttggcat gaagattggt ttaactggtg 1800 cattgaccca aatcgccaca atctccgctt cttaactgcg cagccagatc atgtaagtac 1860 cttcaggtca atcactcaac cattccgttt tgtggtggat gaagtgtcga atttttgcaa 1920 gagttcgctt cggaaacggc gcatgcctgc tccatactgc tttgcagaat tagcaggaac 1980 agacaggcaa agggggtcgg tgattgagcg caaagaaaat gattacggag ggacgcaaga 2040 agcttctggg aaacatacat atgttggctc aataccgatt tcaatcgggc acgtaccagc 2100 aacaatacca gtcaatgaca caatcgaatg cgaattacct actttgcaga ttgtgcgtca 2160 ggtaggagct ttttcctgcc cgtgctctct tgacattcca atcatgacga tgccgttgcc 2220 tgacaatcat aatttcaaaa gcccagatct tctcaaaggg cgtaggggtg gctggtatac 2280 caaacgaggt aatgtaccat atacatatca tggtggcaaa caccaggatc taggctggcc 2340 acgttggttg cctgactgga tgctttgtaa tggtattgat ttggactatt atgattgtgt 2400 cttgtaccaa aaatatgaga aacatgggcg cattggtttg cacagtgatg atgaagcaat 2460 ttttgatccc aatggtcgcg tgcatacttg caatctttcc ggctcggttg agtttaccat 2520 cacttgtggt aagggtttta cttctgcatc tcttgagcct gggacacaat tcacaatgcc 2580 agctggtatg cagcaaactc acaagcatgc cgtcatgggg gcaagtgctg ggcgagaatc 2640 tctgaccttc cgcaagttgg ctgtaaaggt ggaatcgcca cctgaaatac ctactgttga 2700 tgtgaggagt ggaggggagc cagaagctac gcatggacct gaggtttctg tccctgaaca 2760 acaaaaagaa ccccttgagc gagctggtga cttcgatatt gccggcgggc gattgagcat 2820 agttgctgtg gatgctgtcc ttgagcagat taattatcgc tgccatgctg tgcctgggga 2880 tgggaactgt ttttggtata gcatcgaaaa agccttgggg tttgaggcca tgcagtttaa 2940 gagcaaatgc agccaggtta tcttcaacca agatggtgga gccatcaaaa aattgtcaca 3000 acaaatgcaa cctcaggcct ttgctgagga tgaagctata atggctgctg ctatatgctc 3060 caaacactgc atccgcatat tgtgccctga tgagaaattg agttacacgt ataccccaaa 3120 aactgatata attgggtgtg tgcacatgcg tttaagtggt gagcattttg agcatattga 3180 acctgtaaat aaatgcctcg tcaccgctat tgctgcggca cttggtcgca gtgaaactgc 3240 aattatgaat gtcttggagc aacaagaaca gggagcttat caggcaaaca tttgggccgg 3300 agatgggata gacatccagg atcttgagtt ctattttacg ctcttcgata tccaggcagt 3360 gatttttgtt ggggaccaaa caatcaaata caatgaaggt ggtcacgtcc cagcctgttt 3420 caacttggat gatgggcata tttcattttg caggaaaaat tgccctgtca atgttgaggt 3480 gctcaaagga gaagcaagta cactaagcgt ttctgataaa agtgtgttcg aattggcaac 3540 tttgtgtact caaattagtt ataccgcgag tcacgctcgg gctaaggtgc tggctgatag 3600 tctcgagagt ggttgcacag ggatcacact gtcaaaattg ttcaacgatg cgcacaacct 3660 catgcctgag cacgaacagg gggaggtcac agctacttta aattgccttt ttggcacttt 3720 cggttgtggc aagagtacac tattcacgaa attcacgcag aaaaatccag gtaaaggcgt 3780 gttctacgtc tcacctagga aagcccttgc agtggaacac gagcgcaaat gtattggcgg 3840 acaacgaaca gatgttaatg atgcagcagg tcgcaagaag aatagaagac ctcctcatgg 3900 taaaaattgg cacacactta ctttcgagaa gtttcttaag caggtgcacc tagtcaaacc 3960 caggatggcg ttgatcattg atgagataca gttgtaccct ccaggatatc tcgatcttgc 4020 actattgctc attgcaaaag gggtgcacat ctttatcgga ggagatccct gtcagagcga 4080 ttatgataat gaaaaagatc gtgcatggtt gggcaccatg gggagcgatg ttgatcgctt 4140 gctaggcgac caaacgtata agttcaacac atgcagtcaa cgttttaaaa actccaactt 4200 tgtgggtaga ttgccatgtg ctctatttga aaacaaaaac cccgagcccc aaagtgagga 4260 agctcatctg ttgttcaccg gctgcgacga attggtgcaa cttgaaccag agtactgtga 4320 ggtgtttctc gtgtcctctt ttgaggagaa aaaaattgtt gagacacatt tcccgaatgt 4380 ggcgaacaaa gctatcttga ctttcgggga aagtactggg cttaattaca aaaaaggaac 4440 aattttgatc acgaatgtgt ccagctacac taatgagagg cgatgggtca ccgcactgag 4500 ccgtttcagt agtaatgtgt gcttggtgaa tctagttggt gtggattgga atggcattgc 4560 tatggcgtat cgtggacgtg tactagggcg gtttctagct cgcactgcaa agaccctgga 4620 tctgtgtgag ttacttcctg gaaaacctga atttgtcatg ggattccaga gccacgtggg 4680 taaggatgag ggcgttcgtg aggccaagtt ggagggcgac ccctggctaa aatgcatgat 4740 tgatctgggt caaaccgagg atgtcgaaga ggttgaagac ttgcaagagg tcatgcagga 4800 agaatggttc aaaacacact taccgcaagc ggagttggaa agtgtgcgtg cacgttgggt 4860 gcataggttt ttagctaaag agaaacgtga ggtacgcatg ggctctatgg tttctgagca 4920 gttcacagat gaatatgcaa aggaaggggg tctcatcttg accaatgctg cagaacgttt 4980 tgaagctatc tacccaaggc atcgggcgaa cgataccgtc accttcatca tggcagttaa 5040 gaaacgcttg cgcttttcca ggcctgcagt tgagcaagcc aaattgaatg aagcagagct 5100 ttatggtgag ttcctactcc gggaattttg caagaaagtg ccattaaatg gaatgaagga 5160 tgaacgtatg atggaacagg caaagcgagc ttttgaagag aaaaaggtta gcaaaagtgc 5220 tgcaataatt gaaaatcatg caggacgatc gtgtagggat tggctgcttg acattgggca 5280 gattttttcc aagagtcaac tgtgcaccaa atttgataac cggttccgcg ttgctaaagc 5340 tgcgcagagt atagtgtgtt tccaacacgc tgtattgtgc aggtttgccc cttacataag 5400 gtatattgaa gccaagttga atgaggccct accaaaaaat ttctatatcc actccggcaa 5460 aggcttagaa gaactacaag agtgggttat aaagggtaaa ttctcaggaa tctgcacgga 5520 gtctgattat gaggcttttg atgcctcgca agatcagtac atcgttgctt tcgaggtggc 5580 tgtgatgcgg aaattgggat taccggagag tctgatcagc gattacaagt tcatcaagac 5640 gcatcttggt tctaaacttg gaaatttcgc gattatgcgg ttctcagggg aggccagcac 5700 ttttcttttc aatactatgg ccaatatgct attcacattc ctgaggtatg acttgaaggg 5760 acgagagtac atttgcttcg ctggggatga tatgtgcgca tctgaacggc tgccacttag 5820 gcacgagcac gatggtttct taaagaaatt gaagttgaag gccaaagttt tcatggttga 5880 gaaaccaact ttttgcggct ggcacctctg tcccgatgga atttacaaaa aacctcagct 5940 ggtactcgaa agaatgctca ttgcaaaaga gaaaaacaac cttgcaaatt gccttgataa 6000 ttatgccata gaggtggctt atgcctacaa gttgggggaa cgggctgtga accgcatgga 6060 cgctgaggaa ctggaagcgg cctacaattg tgttcgtata ataatcaaga ataagaaact 6120 gctgaaatct gacatactac atttctactc caatttggag tcaaaaatgt agttttatct 6180 tgatgaggcg ttcagttgcc tgcataaggg ttctgtggtt accactgcac tctataggca 6240 ggttgttgtg ttagcttagg ttgtagctgt gtggattgta tatggatgtg ttactcagag 6300 tcgtaggtaa atataggttc actaggttaa atagtagttt gcgccaaccc atcgttttcc 6360 actgtgtccc cggagctggt aaaagcactt gtattcgcga gctaatcaat ctagatagtc 6420 ggttttcagc atatacgctc ggtatcccag atcgtccaaa tttgcaggga attggaatca 6480 aacaatttga aggacagtgc gagcagggta aattgtgcat tttggacgag tatactctag 6540 gtccattcga gcctaatttg ttctttgccg tatttgggga tccgatccaa cataaaccaa 6600 gcttgtcact tagggctgac ttcatatgct gtgaaagccg tcgttttggt cgttgcacag 6660 cacaattact gaggaccctg ggttttgaaa ttcaagcaga gggcgatgat gtggtgaatc 6720 ttggtaaagt gtatggtagt gatttaacgt ccgtaattct atactacgaa cccgaggttg 6780 gatgtatcct cagagctcat aatttgcgtg ctttcaatcc cgaggaggta gtgggccaaa 6840 catttgagtg cgtgactttc atcaccggta agactgtgct acccatagaa gagcgagaat 6900 tggcatacca gtgccttact agacactcca aagagttgca tgtgttgaca ccagatgcaa 6960 cttactccgc cacctgacca ttcaaagacc tacctgggtc tggcgattgg tgcaggtctt 7020 gctttggtaa tttacacgta ctctagaagc actctgccgc acgttggaga taatttacat 7080 catctgccac acggaggttg ttaccaggac ggcaccaaat caattttcta cggtcagccg 7140 cacaagctta attctctcga gaggccaact caattgctgc agcagccctg ggcttatgtt 7200 ataatccttg gtgcgatcat cttcttattg aacatatggg agtcaagaac ttgccgttgt 7260 gggcgttgtg ttagatgagg gatttccagg tgttaatgct agtattagcc ttattggtgc 7320 taggttttgt gtatgttaat attaatcctt attccccgtg tgtcgtagta attacaggtg 7380 agtcagttag gatagtatct tgtgagttca cgcccgagtt tgtcgcttta gctagggatt 7440 taagacccgc aggttcgtgt tgagctctta ggtttgtgag cattgaattg atatactgta 7500 ccatttgacg atgccgccca agcctgatcc agacgctgaa agctctaacg cccaaaggcc 7560 accagtgccg cctccacgcc ccccagctgc taatgctgag gaagcgcgtc aacgcttagc 7620 tgagatggag agggagcgga atgagaactt gaatgaacgt cctccagtta ctgagaacga 7680 ggaggaccta cagatgataa gccgtttggg gcgcttagct gacatgttgc gtcatgagag 7740 atcagctatt gttgtgacca atgctgctct ggagactggt agaccaaccc tgcagcctgc 7800 agagaatatg cgtggggatc cgactaatat atatagtcgc gtgtccactg aattgctgtg 7860 gcggattaag cccaagagag tgtcaaacaa catcgcaact gctgaagaga tgataaggat 7920 acagatcgct cttgaagggc atggtatacc aactgagaat gtggctgagg ttatactcca 7980 gatggccctt atatgtgcca acacaagcag ctcgtccttt caggatcctc agggcaccat 8040 tgaatgggaa gggggtggaa ccattattgt tgacgatgtg gttggtacca taaatgaaat 8100 cagtacttta cgcaaggtct gccgtttgta tgctgccata gtttggaacc acatgcatat 8160 tcatcactcc ccgccagctg attgggctgc tctgggtttt caccacagta caaggtttgc 8220 agcgtttgac ttctttgact acgttgagaa taacgcttct ataaagccag ctgggggtgt 8280 ggtgccgagg ccaactcgag cagagtatga cgcgtatttc acttacaagc atttggcgtt 8340 gaataaggcg aatgtcaatg acactttcgc caactttgat gcccagataa caggagggag 8400 gcagggtcca gcgatcagta ccaatttcaa taatgcgaat aaccggagtc ttcagtaatg 8460 aattcaagcg atgctactag gataaagatg ctcataatag gggctttcgc acaacactca 8520 tcccaagtga gtgttcctat ctgtataaat atatataggc gtgcttttgt taaagttgtt 8580 ggacaagggc gtagtactta cgctcgcaaa cgtcgtgcgt tgtccattgg tcggtgccac 8640 cggtgctacc gagtttatcc tcctttaccg ttttccaaga agtgcgataa ccgcacatgt 8700 gtgcctggaa tttcgtataa tgtgaaggta gctaattata tcctatgggg agtaaccgag 8760 gtgatacccc atcctggtta taatttctaa aagctgcata taaaacttaa ataatatatg 8820 tgtgtgtagc tataaaaaga gtgaggtttt aagatatttt tcccttaaaa aaaaaaaaaa 8880 a 8881 <110> Korea Research Institute of Bioscience and Biotechnology <120> Novel Atractylodes mottle virus gene from Atractylodes japonica          plant <130> PN14233 <160> 1 <170> Kopatentin 2.0 <210> 1 <211> 8881 <212> DNA <213> Atractylodes mottle virus <400> 1 ggataaacaa cattctcatg ccatatattg aacaatagaa atatcgttta atatacgcac 60 aatgtctcta acttaccgga gcccattgga agagaatctt ggagcatatg attcaaccgt 120 gcaagcagct attgccagca catctgcaaa ccactaccgg gaggctgaag cggctaattt 180 ccagtacttc aatttccatt tgcgaccaga agcaaagaaa cacctaattg aagcagggat 240 ctaccttagc cccttctccg ctgtgcctca ctcccatcca gcttgtaaaa cattggaaaa 300 ccatttactg tacaatgttt tacccaaatt aatagataat agattttatt ttgtaggaat 360 taagaatcat aagttagatc tactaaaaac gcgcaattca agtttaagta ctataagtca 420 gataaacagg tatgtcacca gtgctgacaa agcacgttac ggctcagacc tggtccgagt 480 atcaagtgat gaacatgtct gcattgctag gcacaagttt gaattgtcta aaccaacttt 540 gcaggagttg gtaccgcgtt tgcaattagt caaccatgac tacctctttc tgcacgacga 600 gctgcattac tggagtccta aagctttaat aactttccta gaggtgttga aacccaaagt 660 aatgtatgca acgttggttt accctccaga actgctggct gggtcaaaat actccctgaa 720 taaatggtgt tatactttta aggtcttcag gcgagactta ctgttttatc ccgatggcgt 780 catgtgcgag ggttatcaac aaccgttaaa gggtggttat ttgttgcgtg ccaataagat 840 cattttgaat aacggtgatg tctacatggt tgatgttatc catagcaaat tcgctcatca 900 tcttgtgtcc atcacgcggg gtgagttagc tgcgaacact gtgcgatcat ttggaccttt 960 tgaagcaacc agcacacgtg ggcttgaacc cctactcagg aacgtgcaac attgtttccc 1020 cgtatcatac tctgtggtct caaagattta caggtatctc aacacgctca agaaacctga 1080 tgcacagtcg gctatggcca aattgagtca actcctagaa gagcctagtg gtttagaaat 1140 gaaatttcta aaagactttg caaatctcgt cattaacact agtgggatta acactatgat 1200 caagcctgaa cgcttgcgta tgttttttgg gaagtggctt aaagagttac caactatcat 1260 ttcttcccaa ttatcacttg tgcaaacagt gagtctagat gattttgtga catacttagc 1320 cccatttacc ttcgaggtac aattgggtga agtccattat gatcacaaag agatactctc 1380 catgtttgat atggccgagt gcgcagagga aatggacgta cctgatttga tggaccgctt 1440 caccctcggg aaatccgcca tgctcgcaga tagagtgcca caacctgtca gtgctgatct 1500 attcaatgtg ttcagaaaaa caagcacttt gctaaaggta cctcttccca tctttgcacg 1560 ttacctagta tgtgaaataa catacatgct ggatccgctc tgtcgggttg tgagcctcag 1620 tgtcatcagg gaagctattg cacttcgtct gattcgcggt agcccgatga tcctcccgct 1680 gcagcaattg ctcaatctta tacgttctgg gccattattg cgggattgtg tcaataaggt 1740 cattagtcac tatgccaggc tactaactgt gttttggcat gaagattggt ttaactggtg 1800 cattgaccca aatcgccaca atctccgctt cttaactgcg cagccagatc atgtaagtac 1860 cttcaggtca atcactcaac cattccgttt tgtggtggat gaagtgtcga atttttgcaa 1920 gagttcgctt cggaaacggc gcatgcctgc tccatactgc tttgcagaat tagcaggaac 1980 agacaggcaa agggggtcgg tgattgagcg caaagaaaat gattacggag ggacgcaaga 2040 agcttctggg aaacatacat atgttggctc aataccgatt tcaatcgggc acgtaccagc 2100 aacaatacca gtcaatgaca caatcgaatg cgaattacct actttgcaga ttgtgcgtca 2160 ggtaggagct ttttcctgcc cgtgctctct tgacattcca atcatgacga tgccgttgcc 2220 tgacaatcat aatttcaaaa gcccagatct tctcaaaggg cgtaggggtg gctggtatac 2280 caaacgaggt aatgtaccat atacatatca tggtggcaaa caccaggatc taggctggcc 2340 acgttggttg cctgactgga tgctttgtaa tggtattgat ttggactatt atgattgtgt 2400 cttgtaccaa aaatatgaga aacatgggcg cattggtttg cacagtgatg atgaagcaat 2460 ttttgatccc aatggtcgcg tgcatacttg caatctttcc ggctcggttg agtttaccat 2520 cacttgtggt aagggtttta cttctgcatc tcttgagcct gggacacaat tcacaatgcc 2580 agctggtatg cagcaaactc acaagcatgc cgtcatgggg gcaagtgctg ggcgagaatc 2640 tctgaccttc cgcaagttgg ctgtaaaggt ggaatcgcca cctgaaatac ctactgttga 2700 tgtgaggagt ggaggggagc cagaagctac gcatggacct gaggtttctg tccctgaaca 2760 acaaaaagaa ccccttgagc gagctggtga cttcgatatt gccggcgggc gattgagcat 2820 agttgctgtg gatgctgtcc ttgagcagat taattatcgc tgccatgctg tgcctgggga 2880 tgggaactgt ttttggtata gcatcgaaaa agccttgggg tttgaggcca tgcagtttaa 2940 gagcaaatgc agccaggtta tcttcaacca agatggtgga gccatcaaaa aattgtcaca 3000 acaaatgcaa cctcaggcct ttgctgagga tgaagctata atggctgctg ctatatgctc 3060 caaacactgc atccgcatat tgtgccctga tgagaaattg agttacacgt ataccccaaa 3120 aactgatata attgggtgtg tgcacatgcg tttaagtggt gagcattttg agcatattga 3180 acctgtaaat aaatgcctcg tcaccgctat tgctgcggca cttggtcgca gtgaaactgc 3240 aattatgaat gtcttggagc aacaagaaca gggagcttat caggcaaaca tttgggccgg 3300 agatgggata gacatccagg atcttgagtt ctattttacg ctcttcgata tccaggcagt 3360 gatttttgtt ggggaccaaa caatcaaata caatgaaggt ggtcacgtcc cagcctgttt 3420 caacttggat gatgggcata tttcattttg caggaaaaat tgccctgtca atgttgaggt 3480 gctcaaagga gaagcaagta cactaagcgt ttctgataaa agtgtgttcg aattggcaac 3540 tttgtgtact caaattagtt ataccgcgag tcacgctcgg gctaaggtgc tggctgatag 3600 tctcgagagt ggttgcacag ggatcacact gtcaaaattg ttcaacgatg cgcacaacct 3660 catgcctgag cacgaacagg gggaggtcac agctacttta aattgccttt ttggcacttt 3720 cggttgtggc aagagtacac tattcacgaa attcacgcag aaaaatccag gtaaaggcgt 3780 gttctacgtc tcacctagga aagcccttgc agtggaacac gagcgcaaat gtattggcgg 3840 acaacgaaca gatgttaatg atgcagcagg tcgcaagaag aatagaagac ctcctcatgg 3900 taaaaattgg cacacactta ctttcgagaa gtttcttaag caggtgcacc tagtcaaacc 3960 caggatggcg ttgatcattg atgagataca gttgtaccct ccaggatatc tcgatcttgc 4020 actattgctc attgcaaaag gggtgcacat ctttatcgga ggagatccct gtcagagcga 4080 ttatgataat gaaaaagatc gtgcatggtt gggcaccatg gggagcgatg ttgatcgctt 4140 gctaggcgac caaacgtata agttcaacac atgcagtcaa cgttttaaaa actccaactt 4200 tgtgggtaga ttgccatgtg ctctatttga aaacaaaaac cccgagcccc aaagtgagga 4260 agctcatctg ttgttcaccg gctgcgacga attggtgcaa cttgaaccag agtactgtga 4320 gt; ggcgaacaaa gctatcttga ctttcgggga aagtactggg cttaattaca aaaaaggaac 4440 aattttgatc acgaatgtgt ccagctacac taatgagagg cgatgggtca ccgcactgag 4500 ccgtttcagt agtaatgtgt gcttggtgaa tctagttggt gtggattgga atggcattgc 4560 tatggcgtat cgtggacgtg tactagggcg gtttctagct cgcactgcaa agaccctgga 4620 tctgtgtgag ttacttcctg gaaaacctga atttgtcatg ggattccaga gccacgtggg 4680 taaggatgag ggcgttcgtg aggccaagtt ggagggcgac ccctggctaa aatgcatgat 4740 tgatctgggt caaaccgagg atgtcgaaga ggttgaagac ttgcaagagg tcatgcagga 4800 agaatggttc aaaacacact taccgcaagc ggagttggaa agtgtgcgtg cacgttgggt 4860 gcataggttt ttagctaaag agaaacgtga ggtacgcatg ggctctatgg tttctgagca 4920 gttcacagat gaatatgcaa aggaaggggg tctcatcttg accaatgctg cagaacgttt 4980 tgaagctatc tacccaaggc atcgggcgaa cgataccgtc accttcatca tggcagttaa 5040 gaaacgcttg cgcttttcca ggcctgcagt tgagcaagcc aaattgaatg aagcagagct 5100 ttatggtgag ttcctactcc gggaattttg caagaaagtg ccattaaatg gaatgaagga 5160 tgaacgtatg atggaacagg caaagcgagc ttttgaagag aaaaaggtta gcaaaagtgc 5220 tgcaataatt gaaaatcatg caggacgatc gtgtagggat tggctgcttg acattgggca 5280 gattttttcc aagagtcaac tgtgcaccaa atttgataac cggttccgcg ttgctaaagc 5340 tgcgcagagt atagtgtgtt tccaacacgc tgtattgtgc aggtttgccc cttacataag 5400 gtatattgaa gccaagttga atgaggccct accaaaaaat ttctatatcc actccggcaa 5460 aggcttagaa gaactacaag agtgggttat aaagggtaaa ttctcaggaa tctgcacgga 5520 gtctgattat gaggcttttg atgcctcgca agatcagtac atcgttgctt tcgaggtggc 5580 tgtgatgcgg aaattgggat taccggagag tctgatcagc gattacaagt tcatcaagac 5640 gcatcttggt tctaaacttg gaaatttcgc gattatgcgg ttctcagggg aggccagcac 5700 ttttcttttc aatactatgg ccaatatgct attcacattc ctgaggtatg acttgaaggg 5760 acgagagtac atttgcttcg ctggggatga tatgtgcgca tctgaacggc tgccacttag 5820 gcacgagcac gatggtttct taaagaaatt gaagttgaag gccaaagttt tcatggttga 5880 gaaaccaact ttttgcggct ggcacctctg tcccgatgga atttacaaaa aacctcagct 5940 ggtactcgaa agaatgctca ttgcaaaaga gaaaaacaac cttgcaaatt gccttgataa 6000 ttatgccata gaggtggctt atgcctacaa gttgggggaa cgggctgtga accgcatgga 6060 cgctgaggaa ctggaagcgg cctacaattg tgttcgtata ataatcaaga ataagaaact 6120 gctgaaatct gacatactac atttctactc caatttggag tcaaaaatgt agttttatct 6180 tgatgaggcg ttcagttgcc tgcataaggg ttctgtggtt accactgcac tctataggca 6240 ggttgttgtg ttagcttagg ttgtagctgt gtggattgta tatggatgtg ttactcagag 6300 tcgtaggtaa atataggttc actaggttaa atagtagttt gcgccaaccc atcgttttcc 6360 actgtgtccc cggagctggt aaaagcactt gtattcgcga gctaatcaat ctagatagtc 6420 ggttttcagc atatacgctc ggtatcccag atcgtccaaa tttgcaggga attggaatca 6480 aacaatttga aggacagtgc gagcagggta aattgtgcat tttggacgag tatactctag 6540 gtccattcga gcctaatttg ttctttgccg tatttgggga tccgatccaa cataaaccaa 6600 gcttgtcact tagggctgac ttcatatgct gtgaaagccg tcgttttggt cgttgcacag 6660 cacaattact gaggaccctg ggttttgaaa ttcaagcaga gggcgatgat gtggtgaatc 6720 ttggtaaagt gtatggtagt gatttaacgt ccgtaattct atactacgaa cccgaggttg 6780 gatgtatcct cagagctcat aatttgcgtg ctttcaatcc cgaggaggta gtgggccaaa 6840 catttgagtg cgtgactttc atcaccggta agactgtgct acccatagaa gagcgagaat 6900 tggcatacca gtgccttact agacactcca aagagttgca tgtgttgaca ccagatgcaa 6960 cttactccgc cacctgacca ttcaaagacc tacctgggtc tggcgattgg tgcaggtctt 7020 gctttggtaa tttacacgta ctctagaagc actctgccgc acgttggaga taatttacat 7080 catctgccac acggaggttg ttaccaggac ggcaccaaat caattttcta cggtcagccg 7140 cacaagctta attctctcga gaggccaact caattgctgc agcagccctg ggcttatgtt 7200 ataatccttg gtgcgatcat cttcttattg aacatatggg agtcaagaac ttgccgttgt 7260 gggcgttgtg ttagatgagg gatttccagg tgttaatgct agtattagcc ttattggtgc 7320 taggttttgt gtatgttaat attaatcctt attccccgtg tgtcgtagta attacaggtg 7380 agtcagttag gatagtatct tgtgagttca cgcccgagtt tgtcgcttta gctagggatt 7440 taagacccgc aggttcgtgt tgagctctta ggtttgtgag cattgaattg atatactgta 7500 ccatttgacg atgccgccca agcctgatcc agacgctgaa agctctaacg cccaaaggcc 7560 accagtgccg cctccacgcc ccccagctgc taatgctgag gaagcgcgtc aacgcttagc 7620 tgagatggag agggagcgga atgagaactt gaatgaacgt cctccagtta ctgagaacga 7680 ggaggaccta cagatgataa gccgtttggg gcgcttagct gacatgttgc gtcatgagag 7740 atcagctatt gttgtgacca atgctgctct ggagactggt agaccaaccc tgcagcctgc 7800 agagaatatg cgtggggatc cgactaatat atatagtcgc gtgtccactg aattgctgtg 7860 gcggattaag cccaagagag tgtcaaacaa catcgcaact gctgaagaga tgataaggat 7920 acagatcgct cttgaagggc atggtatacc aactgagaat gtggctgagg ttatactcca 7980 gatggccctt atatgtgcca acacaagcag ctcgtccttt caggatcctc agggcaccat 8040 tgaatgggaa gggggtggaa ccattattgt tgacgatgtg gttggtacca taaatgaaat 8100 cagtacttta cgcaaggtct gccgtttgta tgctgccata gtttggaacc acatgcatat 8160 tcatcactcc ccgccagctg attgggctgc tctgggtttt caccacagta caaggtttgc 8220 agcgtttgac ttctttgact acgttgagaa taacgcttct ataaagccag ctgggggtgt 8280 ggtgccgagg ccaactcgag cagagtatga cgcgtatttc acttacaagc atttggcgtt 8340 gaataaggcg aatgtcaatg acactttcgc caactttgat gcccagataa caggagggag 8400 gcagggtcca gcgatcagta ccaatttcaa taatgcgaat aaccggagtc ttcagtaatg 8460 aattcaagcg atgctactag gataaagatg ctcataatag gggctttcgc acaacactca 8520 tcccaagtga gtgttcctat ctgtataaat atatataggc gtgcttttgt taaagttgtt 8580 ggacaagggc gtagtactta cgctcgcaaa cgtcgtgcgt tgtccattgg tcggtgccac 8640 cggtgctacc gagtttatcc tcctttaccg ttttccaaga agtgcgataa ccgcacatgt 8700 gtgcctggaa tttcgtataa tgtgaaggta gctaattata tcctatgggg agtaaccgag 8760 gtgatacccc atcctggtta taatttctaa aagctgcata taaaacttaa ataatatatg 8820 tgtgtgtagc tataaaaaga gtgaggtttt aagatatttt tcccttaaaa aaaaaaaaaa 8880 a 8881

Claims (3)

삽주 식물 유래의 서열번호 1의 염기서열을 포함하는 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자.The Atractylodes mottle virus gene comprising the nucleotide sequence of SEQ ID NO: 1 derived from a ssp. Plant. 제1항의 삽주 식물 유래의 삽주 모틀 바이러스(Atractylodes mottle virus) 유전자를 포함하는 재조합 벡터.1. A recombinant vector comprising the gene of the extract vector of claim 1, which is derived from an extractor plant mottle virus. 제2항의 재조합 벡터로 형질전환된 숙주세포.A host cell transformed with the recombinant vector of claim 2.
KR1020140112527A 2014-08-27 2014-08-27 Novel Atractylodes mottle virus gene from Atractylodes japonica plant KR101613456B1 (en)

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KR20180109512A (en) 2017-03-28 2018-10-08 경북대학교 산학협력단 Primer sets for diagnosing a disease by Atratylodes mottle virus and method for diagnosing the same
KR102341603B1 (en) * 2020-09-21 2021-12-21 한국수목원정원관리원 Primer sets for detecting Soybean leaf crinkle mottle virus and uses thereof

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KR100314837B1 (en) 1996-06-17 2002-06-22 이구택 Coat gene of carnation mottle virus(carmv) and recombinant binary vector containing the same

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* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
KR20180109512A (en) 2017-03-28 2018-10-08 경북대학교 산학협력단 Primer sets for diagnosing a disease by Atratylodes mottle virus and method for diagnosing the same
KR102341603B1 (en) * 2020-09-21 2021-12-21 한국수목원정원관리원 Primer sets for detecting Soybean leaf crinkle mottle virus and uses thereof

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