KR20120088562A - Methods for identification and detection of mycobacterium tuberculosis complex and nontuberculous mycobacteria using duplex real time polymerase chain reaction - Google Patents

Abstract

PURPOSE: A primer set and/or probe for detecting Mycobacterium tuberculosis and nontuberculous mycobacteria are/is provided to enable clinical diagnosis. CONSTITUTION: A primer set which is specific to nontuberculous mycobacteria 16S rRNA gene contain a forward primer of sequence number 22; a reverse primer of sequence number 5, 6, or 7; and a reverse primer of sequence number 8. A probe for detecting the 16S rRNA gene contains a base of sequence number 23. The 5' terminal of the probe is labeled with fluorescence of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670, or NED. The 3'-terminal is labeld with fluorescence inhibitory substance of 6-TAMRA or BHQ-1,2,3.

Description

[Methods for IDENTIFICATION AND DETECTION OF MYCOBACTERIUM TUBERCULOSIS COMPLEX AND NONTUBERCULOUS MYCOBACTERIA USING DUPLEX REAL TIME POLYMERASE CHAIN REACTION}

The present invention relates to a method of detecting Mycobacterium tuberculosis and mycobacterium tuberculosis. More specifically, a primer set and/or probe for detection of Mycobacterium tuberculosis and Mycobacterium tuberculosis, which can detect gene sequences specific to Mycobacterium tuberculosis and Mycobacterium tuberculosis, and a kit for detecting Mycobacterium tuberculosis and Mycobacterium tuberculosis, and dual real-time polymerization using the same. The present invention relates to a method for simultaneous detection of Mycobacterium tuberculosis and Mycobacterium tuberculosis using enzyme chain reaction method.

Nontuberculous mycobacteria have been recognized as non-pathogenic bacteria that exist widely in natural environments such as soil or water. However, with the epidemic of acquired immunodeficiency syndrome (AIDS) in the 1980s, it was recognized that the above bacteria as an opportunistic strain of patients with acquired alopecia areata, and that it can cause infection in normal patients. Awareness spread.

In recent years, the number of infections caused by mycobacterium tuberculosis in the United States and Europe, where the prevalence rate of tuberculosis is low, is increasing, and the prevalence rate of tuberculosis is decreasing in Korea, but infection by mycobacterium tuberculosis is relatively increasing. In 2009, as the liquid tuberculosis culture method was covered by insurance, the number of laboratories that conduct liquid tuberculosis culture tests is increasing, and when tuberculosis is cultured using a liquid medium, more acidic non-tuberculous bacteria are detected than tuberculosis culture using a solid medium. According to reports, about 12% of tuberculosis smears and culture-positive samples are isolated from acidic non-Tuberculosis bacteria, and in Japan, Hong Kong, and Korea, about 10-20% of the acidic non-tuberculous bacteria isolated from sputum cause lung disease in the United States. , Canada and Western Europe are known to cause lung disease in about 40-50%.

However, pulmonary disease caused by acidic non-TB is similar to slow progressing pulmonary tuberculosis, so it is easy to misdiagnose. Is being requested.

However, currently commercially available test reagents used to detect Mycobacterium tuberculosis and Mycobacterium tuberculosis are not unique to the acidic non-Mycobacterium tuberculosis, but by using the nucleotide sequence site that Mycobacterium tuberculosis also has, it detects Mycobacterium tuberculosis when only a specific concentration of Mycobacterium tuberculosis is present. Problems with poor detection and diagnostic accuracy, such as erroneously identified as an acidic non-Tuberculosis bacterium that does not react to primers and reacts only with the primers of an acidic non-Tuberculosis bacillus, or when only acidic non-Tuberculosis bacillus are present when both acidic non-Tuberculosis bacteria are present. Is occurring. Accordingly, a primer set and/or probe capable of recognizing the intrinsic base sequence of the acidic non-Tuberculosis bacteria, which are not present in Mycobacterium tuberculosis, and a rapid and accurate method for separating and detecting Mycobacterium tuberculosis and Mycobacterium tuberculosis using the same are requested.

An object of the present invention is to provide a primer set having high detection power for the Mycobacterium tuberculosis-specific IS6110 gene and a primer set having high detection power for the 16S rRNA gene of Mycobacterium tuberculosis for accurate detection and diagnosis of Mycobacterium tuberculosis and mycobacterium tuberculosis.

Another object of the present invention is to provide a probe with high detection power for Mycobacterium tuberculosis specific IS6110 gene or 16S rRNA gene for accurate detection and diagnosis of Mycobacterium tuberculosis and mycobacterium tuberculosis, and a probe having high detection power for 16S rRNA gene of Mycobacterium tuberculosis. Have.

Another object of the present invention is to provide a kit for detection of Mycobacterium tuberculosis and Mycobacterium tuberculosis, including the primer set and/or probe.

Another object of the present invention is to provide a method for accurately detecting and diagnosing Mycobacterium tuberculosis and Mycobacterium tuberculosis by using a duplex real-time polymerase chain reaction using the primers and/or probes. I have to.

In order to achieve the above object, the present invention provides a probe for detecting the acidic non-Tuberculosis 16S rRNA gene of base SEQ ID NO:9.

According to an embodiment of the present invention, the 5'end of the probe is one fluorescent label selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670, and NED. It is labeled as a factor, and the 3'end can be labeled with one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ (molecular grove binding non-fluorescence quencher). .

The probe for detecting the acidic non-Tuberculosis 16S rRNA gene of base sequence 9 is a forward primer of base sequence 4; One or more reverse primers selected from the group consisting of a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7; And it is a probe specific for the reaction product of the polymerase chain reaction method using a primer set specific to the 16S rRNA gene of the acidic non-Tuberculosis bacteria including the reverse primer of base sequence 8.

In order to achieve the above other object, the present invention is a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 2; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 3; 16S of an acidic non-Mycobacterium tuberculosis including one or more reverse primers selected from the group consisting of a forward primer of base sequence 4, a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7 a set of primers specific for the rRNA gene; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting the acidic non-Tuberculosis bacteria 16S rRNA gene of base SEQ ID NO:9.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

The probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene of base sequence 9 and the probe for detecting Mycobacterium tuberculosis IS6110 gene of base sequence 3 may be labeled with different detection means. The detectable means refers to a compound, a biomolecule, or a biomolecule mimic, which can be connected to, bound to, or attached to a probe to determine density, concentration, amount, etc. in a conventional manner. Examples thereof include a commonly used fluorescent labeling factor, a luminescent material, a bioluminescent material, an isotope, and the like, but is not limited thereto. Fluorescent labeling factors are used differently if excitation and emission wavelengths are different depending on the type, so the fluorescent labeling factor used together in one polymerase chain reaction product should be used separately after determining whether or not it can be detected. , Different colors can be used. Specific details and selection of the fluorescent labeling factor will be apparent to those skilled in the art pertaining to the present invention.

The Mycobacterium tuberculosis and Mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 2. The primer set of the IS6110 gene of Mycobacterium tuberculosis is a target of several types of Mycobacterium bacteria (Mycobacterium tuberculosis complex, MTC).

According to an embodiment of the present invention, the probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 3 and the probe for detecting the 16S rRNA gene of base sequence 9 may be a Taqman probe.

The probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 3 is specific to the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 2 It's a probe.

According to an embodiment, the forward primer of base sequence 4 is a 16S rRNA gene-specific forward primer of an acidic non-Tuberculosis bacteria. In the case of base sequence 4 (5′-ggyrayctgccctgcac-3′), 5′-ggtaatctgccctgcac-3′ (base sequence 12), 5′-ggtaacctgccctgcac-3′ (base sequence 13), 5′-ggcaatctgccctgcac-3′ ( Base sequence 14) and 5′-ggcaacctgccctgcac-3′ (base sequence 15), 5′-ggtgatctgccctgcac-3′ (base sequence 16), 5′-ggtgacctgccctgcac-3′ (base sequence 17), 5′-ggcgatctgccctgcac-3 ′ (Base sequence 18) and 5′-ggcgacctgccctgcac-3′ (base sequence 19). For example, 5′-ggtaatctgccctgcac-3′, 5′-ggtaacctgccctgcac-3′, 5′ -ggcaatctgccctgcac-3′ and 5′-ggcaacctgccctgcac-3′, 5′-ggtgatctgccctgcac-3′, 5′-ggtgacctgccctgcac-3′, 5′-ggcgatctgccctgcac-3′ and 5′-ggcgacctgccctgcac-3′ about 1:1 It may be a primer set included in a ratio of :1:1:1:1:1:1.

The primers of base sequence 5 (NTM-1), primers of base sequence 6 (NTM-1), and primers of base sequence 7 (NTM-1) are 16S rRNA gene-specific reverse primers. Primer of base sequence 8 (NTM-2) is a 16S rRNA gene-specific reverse primer of an acidic non-Tuberculosis bacteria. The reverse primer of the 16S rRNA gene of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of base sequence 8 (5′-catcccacaccgctaccw-3′), it means a primer set including 5′-catcccacaccgctacct-3′ (base sequence 10) and 5′-catcccacaccgctacca-3′ (base sequence 11). For example, the primer of base sequence 8 may be a primer set including about 1:1 5'-catcccacaccgctacct-3' and 5'-catcccacaccgctacca-3'.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the probe for detecting the mycobacterium tuberculosis 16S rRNA gene is FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS It is labeled with one kind of fluorescent labeling factor selected from the group consisting of RED, RED670 and NED, and the 3'end is one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ. It is labeled as characterized by being labeled, and the 5'end of the probe for detecting the IS6110 gene of the Mycobacterium tuberculosis and the 5'end of the probe for detecting the 16S rRNA gene of the mycobacterium tuberculosis may be labeled with different fluorescent markers. As an example, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is labeled with VIC, and the 3'end is labeled with MGBNFQ, and the 5'end of the probe for detecting an acidic non-Tuberculosis 16S rRNA gene is FAM, and the 3'end is labeled with MGBNFQ. Can be.

According to an embodiment, in the Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit, a reverse primer of base sequence 5 and a reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 and The reverse primer of nucleotide sequence 11 may be included in a ratio of 1:1. Accordingly, the primers of base sequence 5, 5'-catcccacaccgctacct-3' and 5'-catcccacaccgctacca-3' may have a ratio of 2:1:1.

According to an embodiment, in the Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit, the reverse primer of base sequence 6 and the reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 and The reverse primer of nucleotide sequence 11 may be included in a ratio of 1:1.

According to an embodiment, the reverse primer of base sequence 7 and the reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 and The reverse primer of nucleotide sequence 11 may be included in a ratio of 1:1.

In order to achieve the above another object, the present invention comprises the steps of separating DNA from a specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 2; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 3; One or more reverse primers (NTM-1) selected from the group consisting of a forward primer of base sequence 4, a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7 and a reverse primer of base sequence 8 (NTM- 2) a primer set specific to the 16S rRNA gene of the acid-resistant non-Tuberculosis bacteria; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting the acidic non-Tuberculosis bacteria 16S rRNA gene of base sequence 9; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above object, the forward primer of base sequence 22; One or more reverse primers selected from the group consisting of a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7; And it provides a primer set specific to the 16S rRNA gene of the acid-resistant non-Tuberculosis bacteria including the reverse primer of SEQ ID NO: 8.

The forward primer of base sequence 22 is a 16S rRNA gene-specific forward primer of an acidic non-Tuberculosis bacteria.

The primers of base sequence 5, primers of base sequence 6, and primers of base sequence 7 are 16S rRNA gene-specific reverse primers (NTM-1). Primer of base sequence 8 (NTM-2) is a 16S rRNA gene-specific reverse primer of an acidic non-Tuberculosis bacteria. The reverse primer of the 16S rRNA gene of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of the base sequence 8 (5′-catcccacaccgctaccw-3′), as a primer set including 5′-catcccacaccgctacct-3′ (base sequence 10) and 5′-catcccacaccgctacca-3′ (base sequence 11), the base sequence It may be a primer set including 10 and nucleotide sequence 11 at about 1:1.

In order to achieve the object of the present invention, it provides a probe for detecting the acidic non-Tuberculosis 16S rRNA gene of base sequence 23.

According to an embodiment of the present invention, the 5'end of the probe is one fluorescent label selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670, and NED. It is labeled as a factor, and the 3'end may be labeled with one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA and BHQ-1,2,3.

The probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene of base sequence 23 is one or two or more reverse primers selected from the group consisting of a forward primer of base sequence 22, a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7 And it is a probe specific for the reaction product of the polymerase chain reaction method using a primer specific for the 16S rRNA gene of the acidic non-Tuberculosis bacteria including the reverse primer of base sequence 8.

In order to achieve the above other object, the present invention is a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21; 16S of an acidic non-Mycobacterium tuberculosis including one or more reverse primers selected from the group consisting of a forward primer of base sequence 22, a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7 a set of primers specific for the rRNA gene; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene of base sequence 23.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

The probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene of base sequence 23 and the probe for detecting Mycobacterium tuberculosis IS6110 gene of base sequence 21 may be labeled with different detection means. The detectable means refers to a compound, a biomolecule, or a biomolecule mimic, which can be connected to, bound to, or attached to a probe to determine density, concentration, amount, etc. in a conventional manner. Examples thereof include a commonly used fluorescent labeling factor, a luminescent material, a bioluminescent material, an isotope, and the like, but is not limited thereto. Fluorescent labeling factors are used differently if excitation and emission wavelengths are different depending on the type, so the fluorescent labeling factor used together in one polymerase chain reaction product should be used separately after determining whether or not it can be detected. , Different colors can be used. Specific details and selection of the fluorescent labeling factor will be apparent to those skilled in the art pertaining to the present invention.

The Mycobacterium tuberculosis and Mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20. The primers for the IS6110 gene of Mycobacterium tuberculosis are designed to detect all of the Mycobacterium tuberculosis (MTC) species to be detected.

According to an embodiment, the probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21 and the probe for detecting the mycobacterium tuberculosis 16S rRNA gene of base sequence 23 may be Taqman probes.

The probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21 is specific to the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20. It's a probe.

The primers of base sequence 5, primers of base sequence 6, and primers of base sequence 7 are 16S rRNA gene-specific reverse primers (NTM-1). Primer of base sequence 8 (NTM-2) is a 16S rRNA gene-specific reverse primer of an acidic non-Tuberculosis bacteria. The reverse primer of the 16S rRNA gene of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of base sequence 8 (5′-catcccacaccgctaccw-3′), it means a primer set including 5′-catcccacaccgctacct-3′ (base sequence 10) and 5′-catcccacaccgctacca-3′ (base sequence 11). For example, the primer of base sequence 8 may be a primer set including about 1:1 5'-catcccacaccgctacct-3' and 5'-catcccacaccgctacca-3'.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the probe for detecting the mycobacterium tuberculosis 16S rRNA gene is FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS It is labeled with one kind of fluorescent labeling factor selected from the group consisting of RED, RED670 and NED, and the 3'end is labeled with one kind of fluorescent inhibitor selected from the group consisting of 6-TAMRA and BHQ-1,2,3. And the 5'end of the probe for detecting IS6110 gene of Mycobacterium tuberculosis and the 5'end of the probe for detecting the mycobacterium tuberculosis 16S rRNA gene may be labeled with different fluorescent markers. As an example, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is labeled with HEX, the 3'end is labeled with BHQ-1, and the 5'end of the probe for detecting the mycobacterium tuberculosis 16S rRNA gene is FAM, and the 3'end is BHQ. -1 may be displayed.

*According to an embodiment, the reverse primer of base sequence 5 and the reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 in the Mycobacterium tuberculosis and acidic non-Mycobacterium tuberculosis detection kit. And the reverse primer of base sequence 11 may be included in a 1:1 ratio. Accordingly, the primers of base sequence 5, 5'-catcccacaccgctacct-3' and 5'-catcccacaccgctacca-3' may have a ratio of 2:1:1.

According to an embodiment, in the Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit, the reverse primer of base sequence 6 and the reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 and The reverse primer of nucleotide sequence 11 may be included in a ratio of 1:1.

According to an embodiment, the reverse primer of base sequence 7 and the reverse primer of base sequence 8 may be 1:1, and the reverse primer of base sequence 8 is a reverse primer of base sequence 10 and The reverse primer of nucleotide sequence 11 may be included in a ratio of 1:1.

In order to achieve the another object, the step of separating DNA from the specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21; 16S of an acidic non-Mycobacterium tuberculosis including one or more reverse primers selected from the group consisting of a forward primer of base sequence 22, a primer of base sequence 5, a primer of base sequence 6, and a primer of base sequence 7 a set of primers specific for the rRNA gene; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting the acidic non-Tuberculosis bacteria 16S rRNA gene of base sequence 23; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above object, a probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26 is provided.

According to an embodiment of the present invention, the 5'end of the probe is one type of fluorescence selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED Labeled with a labeling factor, and the 3'end may be labeled with one type of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ.

The probe for detection of the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26 is a polymerase chain using a common primer for amplifying the 16S rRNA gene of Mycobacterium tuberculosis and an acidic non-Mycobacterium tuberculosis including a forward primer of base sequence 24 and a reverse primer set of base sequence 25 It is a probe specific to the reaction product of Mycobacterium tuberculosis among the reaction products of the reaction method.

In order to achieve the above object, there is provided a probe for detecting an acidic non-Tuberculosis 16S rRNA gene comprising a probe of base sequence 27 and a probe of base sequence 28.

The probe for acidic non-Mycobacterium tuberculosis 16S rRNA gene detection including the probe of base sequence 27 and the probe of base sequence 28 is 16S rRNA of Mycobacterium tuberculosis and mycobacterium tuberculosis including a set of forward primers of base sequence 24 and reverse primers of base sequence 25 It is a probe specific to the reaction product of acidic non-Tuberculosis bacteria among the reaction products of the polymerase chain reaction method using a common primer to amplify the gene.

According to an embodiment of the present invention, the 5'end of the probe is one type of fluorescence selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED Labeled with a labeling factor, and the 3'end may be labeled with one type of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ.

In order to achieve the above other object, the present invention provides a common primer set for amplifying the 16S rRNA gene of Mycobacterium tuberculosis and mycobacterium tuberculosis, including a forward primer of base sequence 24 and a reverse primer of base sequence 25; A probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene comprising a probe of base sequence 27 and a probe of base sequence 28.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

The probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26 and the probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene including the probe of base sequence 27 and base sequence 28 may be labeled with different detection means. The detectable means refers to a compound, a biomolecule, or a biomolecule mimic, which can be connected to, bound to, or attached to a probe to determine density, concentration, amount, etc. in a conventional manner. Examples thereof include a commonly used fluorescent labeling factor, a luminescent material, a bioluminescent material, an isotope, and the like, but is not limited thereto. Fluorescent labeling factors are used differently if excitation and emission wavelengths are different depending on the type, so the fluorescent labeling factor used together in one polymerase chain reaction product should be used separately after determining whether or not it can be detected. , Different colors can be used. Specific details and selection of the fluorescent labeling factor will be apparent to those skilled in the art pertaining to the present invention.

The forward primer of base sequence 24 and the reverse primer of base sequence 25 are primers capable of amplifying the 16S rRNA gene region of mycobacteria, and are a common set of primers for amplifying the 16S rRNA gene of Mycobacterium tuberculosis and mycobacterium tuberculosis.

According to an embodiment, the forward primer of base sequence 24 is a primer set including 5′-ggataagcctgggaaactgg-3′ (base sequence 29) and 5′-ggataagcttgggaaactgg-3′ (base sequence 30) in a ratio of about 1:1 Can be In addition, the reverse primer of base sequence 25 may be a primer set including 5′-accccaccaacaagctgata-3′ (base sequence 31) and 5′-accccaccaactagctgata-3′ (base sequence 32) in a ratio of about 1:1.

According to an embodiment, the probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26, the probe for detecting the mycobacterium tuberculosis 16S rRNA gene including the probe of base sequence 27 and the probe of base sequence 28 may be a Taqman probe.

The probe for detection of the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26, the probe for detection of the mycobacterium tuberculosis 16S rRNA gene including the probe of Base SEQ ID NO: 27 and the probe of Base SEQ ID NO: 28 includes Mycobacterium tuberculosis (MTC) and Mycobacterium tuberculosis (NTM). It was designed to target specifically distinguishable 16S rRNA base sites.

According to an embodiment, the probes of base sequence 28, which are NTM-2 probes, are 5′-FAM-tggaaagcgtttggtagc-MGB-3′ (base sequence 33) and 5′-FAM-tggaaagtgtttggtagc-MGB-3′ (base sequence 34). It may contain about 1:1.

According to an embodiment of the present invention, the 5′ end of the probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26, the probe for detecting the Mycobacterium tuberculosis 16S rRNA gene including the probe of Base SEQ ID NO: 27 and the probe of Base SEQ ID NO: 28 This FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED are labeled with one kind of fluorescent labeling factor selected from the group consisting of, and the 3'end is 6-TAMRA, BHQ -1,2,3 and MGBNFQ labeled with one kind of fluorescent inhibitor selected from the group consisting of, the probe for detecting the 16S rRNA gene of the Mycobacterium tuberculosis of the base sequence 26 and the probe and base of the base sequence 27 The 5′ end of the probe for detecting the acidic non-Tuberculosis 16S rRNA gene including the probe of SEQ ID NO: 28 and the 5′ end of the probe for detecting the acidic non-Tuberculosis 16S rRNA gene may be labeled with different fluorescent markers. As an example, the 5'end of the probe for detecting the Mycobacterium tuberculosis 16S rRNA gene is labeled with VIC, the 3'end is labeled with MGBNFQ, and the 5'end of the probe for detection of the mycobacterium tuberculosis 16S rRNA gene is FAM, and the 3'end is MGBNFQ. Can be displayed.

In order to achieve the another object, the step of separating DNA from the specimen; A common primer set for amplifying the 16S rRNA gene of Mycobacterium tuberculosis and mycobacterium tuberculosis, including a forward primer of base sequence 24 and a reverse primer of base sequence 25; A probe for detecting the Mycobacterium tuberculosis 16S rRNA gene of base sequence 26; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene including a probe of base sequence 27 and a probe of base sequence 28; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above object, the present invention provides a probe for detecting an acidic non-Tuberculosis 16S rRNA gene selected from the group consisting of a probe of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39.

According to an embodiment of the present invention, the 5'end of the probe is one type of fluorescence selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED It is labeled with a labeling factor, and the 3'end can be labeled with one kind of fluorescence inhibitor (Quencher) selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ (molecular grove binding non-fluorescence quencher). have.

The probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene selected from the group consisting of a probe of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39 includes a forward primer of base sequence 35 and a reverse primer of base sequence 36. It is a probe specific to the reaction product of the polymerase chain reaction method using a primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria.

In order to achieve the above other object, the present invention is a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria comprising a forward primer of base sequence 35 and a reverse primer of base sequence 36; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting the 16S rRNA gene selected from the group consisting of a probe of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

The probe of base sequence 37 and the probe for detecting the mycobacterium tuberculosis IS6110 gene selected from the group consisting of the probe of base sequence 38 and the probe of base sequence 39 and the probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21 are different detection means. Can be labeled. The detectable means refers to a compound, a biomolecule, or a biomolecular mimetic, etc., which can be connected to, bound to, or attached to a probe to confirm density, concentration, amount, etc. in a conventional manner. Examples thereof include a commonly used fluorescent labeling factor, a luminescent material, a bioluminescent material, an isotope, and the like, but is not limited thereto. Fluorescent labeling factors are used differently if excitation and emission wavelengths are different depending on the type, so the fluorescent labeling factor used together in one polymerase chain reaction product should be used separately after determining whether or not it can be detected. , Different colors can be used. Specific details and selection of the fluorescent labeling factor will be apparent to those skilled in the art pertaining to the present invention.

The Mycobacterium tuberculosis and Mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20. The primer set of the IS6110 gene of Mycobacterium tuberculosis is a target of several types of Mycobacterium bacteria (Mycobacterium tuberculosis complex, MTC).

According to an embodiment of the present invention, an acidic non-Mycobacterium tuberculosis 16S rRNA selected from the group consisting of a probe for detecting Mycobacterium tuberculosis IS6110 gene of base sequence 21, a probe base sequence of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39 The probe for gene detection may be a Taqman probe.

The probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21 is specific to the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20. It's a probe.

The probe for detecting the acidic non-Tuberculosis 16S rRNA gene selected from the group consisting of a probe of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39 includes a forward primer of base sequence 35 and a reverse primer of base sequence 36. It is a probe specific for the reaction product of the polymerase chain reaction method using a primer set specific for the 16S rRNA gene of the acid-resistant non-Tuberculosis bacteria.

The forward primer of base SEQ ID NO: 35 is a forward primer specific to the acidic non-Tuberculosis 16S rRNA gene. The forward primer of the 16S rRNA gene of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of base sequence 35, 5′-catgtcttgtgggggaaagctt-3′ (base sequence 40), 5′-catgttttgtgggggaaagctt-3′ (base sequence 41), 5′-catgtcttctgggggaaagctt-3′ (base sequence 42), 5′-catgtcttgtgggtggaaagcttgtgggggaaagctt-3′ -3′ (base sequence 43), 5′-catgtcttgtggggcaaagctt-3′ (base sequence 44), 5′-catgttttctgggggaaagctt-3′ (base sequence 45), 5′-catgtcttctggtggaaagctt-3′ (base sequence 46), 5′ -catgtcttgtggtgcaaagctt-3′ (base sequence 47), 5′-catgttttgtggggcaaagctt-3′ (base sequence 48), 5′-catgtcttctggggcaaagctt-3′ (base sequence 49), 5′-catgttttgtggtggaaagctt-3′ (base sequence 50) 5′-catgttttctggtggaaagctt-3′ (base sequence 51), 5′-catgttttctggggcaaagctt-3′ (base sequence 52), 5′-catgttttgtggtgcaaagctt-3′ (base sequence 53), 5′-catgtcttctggtgcaaagctt-3′ (base sequence 54) ) And 5′-catgttttctggtgcaaagctt-3′ (base sequence 55). For example, the primers of base sequence 35 may be a primer set including substantially the same amount of primers of base sequences 40 to 55, respectively.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the probe for detecting the mycobacterium tuberculosis 16S rRNA gene is FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS It is labeled with one kind of fluorescent labeling factor selected from the group consisting of RED, RED670 and NED, and the 3'end is labeled with one kind of fluorescent inhibitor selected from the group consisting of 6-TAMRA and BHQ-1,2,3 , The 5'end of the probe for detecting the IS6110 gene of Mycobacterium tuberculosis and the 5'end of the probe for detecting the mycobacterium 16S rRNA gene may be labeled with different fluorescent markers. As an example, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is labeled with HEX, the 3'end is labeled with BHQ-1, and the 5'end of the probe for detecting the mycobacterium tuberculosis 16S rRNA gene is FAM, and the 3'end is BHQ. -1 may be displayed.

According to an embodiment, the probe for detecting the 16S rRNA gene of base sequence 38 in the Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit is about 1 Can be included as :1.

In order to achieve the another object, the step of separating DNA from the specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 1 and a reverse primer of base sequence 20; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 21; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria comprising a forward primer of base sequence 35 and a reverse primer of base sequence 36; And performing a double real-time polymerase chain reaction of the DNA using a probe for detecting an acidic non-Tuberculosis bacteria 16S rRNA gene selected from the group consisting of a probe of base sequence 37, a probe of base sequence 38, and a probe of base sequence 39; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above object, the forward primer of base sequence 61; And it provides a primer set specific to the 16S rRNA gene of the acidic non-Tuberculosis bacteria including a reverse primer comprising a primer of base sequence 5 and a primer of base sequence 8.

The forward primer of nucleotide sequence 61 is a 16S rRNA gene-specific forward primer of an acidic non-Tuberculosis bacteria.

* Primer of base sequence 5 (NTM-1) and primer of base sequence 8 (NTM-2) are 16S rRNA gene-specific reverse primers. The reverse primer of the 16S rRNA gene of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of the base sequence 8 (5′-catcccacaccgctaccw-3′), as a primer set including 5′-catcccacaccgctacct-3′ (base sequence 10) and 5′-catcccacaccgctacca-3′ (base sequence 11), the base sequence It may be a primer set including 10 and nucleotide sequence 11 at about 1:1.

In order to achieve the above other object, the present invention is a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59; A probe for detecting Mycobacterium tuberculosis IS6110 gene selected from a probe of base sequence 21 or a probe of base sequence 60; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria including a forward primer of base sequence 61 and a reverse primer comprising a primer of base sequence 5 and base sequence 8; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene selected from the probe of base sequence 62 or the probe of base sequence 63.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

According to one embodiment of the present invention, the Mycobacterium tuberculosis IS6110 gene detection probe selected from the probe of base sequence 21 or the probe of base sequence 60, and the acidic non-Mycobacterium tuberculosis 16S rRNA selected from the probe of base sequence 62 or the probe of base sequence 63 The probes for gene detection may be labeled with different detectable means.

The Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59. The primer set specific for the IS6110 gene of Mycobacterium tuberculosis was designed to detect all of the Mycobacterium tuberculosis complex (MTC) to be detected.

The probe of base sequence 21 or the probe of base sequence 60 is specific for the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59. It is a typical probe.

According to an embodiment of the present invention, a probe for detecting the Mycobacterium tuberculosis IS6110 gene selected from the probe of base sequence 21 or the probe of base sequence 60 may be a Taqman probe.

The forward primer of nucleotide sequence 61 is a 16S rRNA gene-specific forward primer of an acidic non-Tuberculosis bacteria. The primers of base sequence 5 (NTM-1) and primers of base sequence 8 (NTM-2) are 16S rRNA gene-specific reverse primers of acidic non-Tuberculosis bacteria.

The probe of base sequence 62 or the probe of base sequence 63 is a primer specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria including a forward primer of base sequence 61, a reverse primer including a primer of base sequence 5, and a primer of base sequence 8 It is a probe specific to the reaction product of the polymerase chain reaction method using the set.

According to an embodiment of the present invention, the probe for detecting the acidic non-Tuberculosis 16S rRNA gene selected from the probe of base sequence 62 or the probe of base sequence 63 may be a Taqman probe.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED. Is labeled with one kind of fluorescent labeling factor, and the 3'end is labeled with one kind of fluorescent inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ, and the acidic non-Tuberculosis 16S rRNA gene The 5'end of the probe for detection is labeled with one fluorescent labeling factor selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED, and 3' The end is labeled with one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3, and MGBNFQ, and the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the acidic non-Mycobacterium tuberculosis 16S rRNA gene detection The 5'end of the probe may be labeled with different fluorescent labeling factors.

In order to achieve the another object, the step of separating DNA from the specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59; A probe for detecting Mycobacterium tuberculosis IS6110 gene selected from a probe of base sequence 21 or a probe of base sequence 60; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria including a forward primer of base sequence 61 and a reverse primer comprising a primer of base sequence 5 and base sequence 8; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene selected from a probe of base sequence 62 or a probe of base sequence 63; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above object, a forward primer including a primer of base sequence 65, a primer of base sequence 66, and a primer of base sequence 67; And it provides a primer set specific to the 16S rRNA gene of the acid-resistant non-Tuberculosis bacteria including the reverse primer of nucleotide sequence 36.

The forward primer including the primer of base sequence 65 (NTM-1), the primer of base sequence 66 (NTM-2), and the primer of base sequence 67 (NTM-3) is a 16S rRNA gene-specific forward primer of acidic non-Tuberculosis bacteria to be. The 16S rRNA gene forward primer of the acidic non-Tuberculosis bacteria was designed to detect all of the various types of acid-resistant non-Tuberculosis bacteria to be detected. In the case of the base sequence 65 (5′-tktggtggaaagcttttgc-3′), a primer set including 5′-tgtggtggaaagcttttgc-3′ (base sequence 69) and 5′-tttggtggaaagcttttgc-3′ (base sequence 70), a base sequence It may be a primer set including 69 and nucleotide sequence 70 at about 1:1. In the case of the base sequence 66 (5′-ggtgwgtggtgcaaagctt-3′), a primer set including 5′-ggtgagtggtgcaaagctt-3′ (base sequence 71) and 5′-ggtgtgtggtgcaaagctt-3′ (base sequence 72), the base sequence It may be a primer set including about 1:1 with 71 and nucleotide sequence 72.

In order to achieve the above other object, a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 20; A probe for detecting Mycobacterium tuberculosis IS6110 gene selected from a probe of base sequence 21 or a probe of base sequence 64; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria including a primer of base sequence 65, a forward primer including a primer of base sequence 66 and a primer of base sequence 67, and a reverse primer of base sequence 36; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene selected from a probe of base sequence 39 or a probe of base sequence 68.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

According to an embodiment of the present invention, the Mycobacterium tuberculosis IS6110 gene detection probe selected from the probe of base sequence 21 or the probe of base sequence 64, and the acidic non-Mycobacterium tuberculosis 16S rRNA selected from the probe of base sequence 39 or the probe of base sequence 68 The probes for gene detection may be labeled with different detectable means.

The Mycobacterium tuberculosis and Mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 20. The primer set specific for the IS6110 gene of Mycobacterium tuberculosis was designed to detect all of the Mycobacterium tuberculosis complex (MTC) to be detected.

The probe of base sequence 21 or the probe of base sequence 64 is specific to the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 20. It is a typical probe.

* According to an embodiment of the present invention, the probe for detecting the Mycobacterium tuberculosis IS6110 gene selected from the probe of base sequence 21 or the probe of base sequence 64 may be a Taqman probe.

The forward primer including the primer of base sequence 65, the primer of base sequence 66, and the primer of base sequence 67 is a 16S rRNA gene-specific forward primer of acidic non-Tuberculosis bacteria. The reverse primer of nucleotide sequence 36 is a 16S rRNA gene-specific reverse primer of an acidic non-Tuberculosis bacteria.

The probe of base sequence 39 or the probe of base sequence 68 is 16S of an acidic non-Tuberculosis bacteria including a forward primer including a primer of base sequence 65, a primer of base sequence 66, and a primer of base sequence 67, and a reverse primer of base sequence 36. It is a probe specific for the reaction product of the polymerase chain reaction method using a primer set specific for the rRNA gene.

According to an embodiment of the present invention, the probe for detecting the 16S rRNA gene of the acidic non-Tuberculosis bacteria selected from the probe of base sequence 39 or the probe of base sequence 68 may be a Taqman probe. In the case of the probe of base sequence 68 (5′-FAM-cctgagagggtgwccg-MGB-3′), 5′-FAM-cctgagagggtgaccg-MGB-3′ (base sequence 73) and 5′-FAM-cctgagagggtgtccg-MGB-3′ As a primer set including (base sequence 74), it may be a probe set including nucleotide sequence 73 and nucleotide sequence 74 in a 1:1 ratio.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED. Is labeled with one kind of fluorescent labeling factor, and the 3'end is labeled with one kind of fluorescent inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ, and the acidic non-Tuberculosis 16S rRNA gene The 5'end of the probe for detection is labeled with one fluorescent labeling factor selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED, and 3' The end is labeled with one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3, and MGBNFQ, and the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the acidic non-Mycobacterium tuberculosis 16S rRNA gene detection The 5'end of the probe may be labeled with different fluorescent labeling factors.

In order to achieve the another object, the step of separating DNA from the specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 20; A probe for detecting Mycobacterium tuberculosis IS6110 gene selected from a probe of base sequence 21 or a probe of base sequence 64; A primer set specific to the 16S rRNA gene of acidic non-Tuberculosis bacteria including a primer of base sequence 65, a forward primer including a primer of base sequence 66 and a primer of base sequence 67, and a reverse primer of base sequence 36; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene selected from a probe of base sequence 39 or a probe of base sequence 68; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

In order to achieve the above other object, a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 60; A primer set specific to the 16S rRNA gene of mycobacteria including a forward primer of base sequence 24 and a reverse primer of base sequence 75; And it provides a Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit comprising a probe for detecting the acidic non-Tuberculosis 16S rRNA gene including the probe of base sequence 27 and the probe of base sequence 76.

The detection kit may include a reagent for amplifying DNA through a real-time polymerase chain reaction. Reagents for amplifying the DNA by real-time polymerase chain reaction may include DNA polymerase, dNTPs, PCR buffer, and the like.

According to an embodiment of the present invention, an acidic non-Mycobacterium tuberculosis 16S rRNA comprising a probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 60 and a probe of base sequence 27 (NTM-1) and a probe of base sequence 76 (NTM-2) The probes for gene detection may be labeled with different detectable means.

The Mycobacterium tuberculosis and mycobacterium tuberculosis detection kit includes a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59. The primer set specific for the IS6110 gene of Mycobacterium tuberculosis was designed to detect all of the Mycobacterium tuberculosis complex (MTC) to be detected.

The probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 60 is specific for the reaction product of the polymerase chain reaction method using a primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59. It's a probe.

According to an embodiment of the present invention, the probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 60 may be a Taqman probe.

The Mycobacterium tuberculosis and Mycobacterium tuberculosis detection kit includes a primer set specific to the 16S rRNA gene of mycobacteria including a forward primer of base sequence 24 and a reverse primer of base sequence 75. The forward primer of base sequence 24 and the reverse primer of base sequence 75 are primers capable of amplifying the 16S rRNA gene site of Mycobacteria, and are a common primer set for amplifying the 16S rRNA gene of Mycobacterium tuberculosis and mycobacterium tuberculosis.

The forward primer of base sequence 24 is a 16S rRNA gene-specific forward primer of mycobacteria. In the case of the base sequence 24 (5′-ggataagcytgggaaactgg-3′), as a primer set including 5′-ggataagcctgggaaactgg-3′ (base sequence 29) and 5′-ggataagcttgggaaactgg-3′ (base sequence 30), a base sequence It may be a primer set including about 1:1 with 29 and nucleotide sequence 30.

The reverse primer of nucleotide sequence 36 is a 16S rRNA gene-specific reverse primer of mycobacteria.

The probe for detecting the acidic non-Mycobacterium tuberculosis 16S rRNA gene including the probe of base sequence 27 and the probe of base sequence 76 is specific for 16S rRNA gene of mycobacteria including a forward primer of base sequence 24 and a reverse primer of base sequence 75 Among the reaction products of the polymerase chain reaction method using a primer set, it is a probe specific to the reaction product of the polymerase chain reaction method of an acidic non-Tuberculosis bacteria.

The probe for detecting the acidic non-Tuberculosis bacteria 16S rRNA gene including the probe of base sequence 27 and the probe of base sequence 76 is designed to detect all of the various types of acid-free tuberculosis bacteria to be detected.

According to an embodiment of the present invention, the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene is selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED. Is labeled with one kind of fluorescent labeling factor, and the 3'end is labeled with one kind of fluorescent inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3 and MGBNFQ, and the acidic non-Tuberculosis 16S rRNA gene The 5'end of the probe for detection is labeled with one fluorescent labeling factor selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED, and 3' The end is labeled with one kind of fluorescence inhibitor selected from the group consisting of 6-TAMRA, BHQ-1,2,3, and MGBNFQ, and the 5'end of the probe for detecting the Mycobacterium tuberculosis IS6110 gene and the acidic non-Mycobacterium tuberculosis 16S rRNA gene detection The 5'end of the probe may be labeled with different fluorescent labeling factors.

In order to achieve the another object, the step of separating DNA from the specimen; A primer set specific to the IS6110 gene of Mycobacterium tuberculosis including a forward primer of base sequence 58 and a reverse primer of base sequence 59; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of base sequence 60; A primer set specific to the 16S rRNA gene of mycobacteria including a forward primer of base sequence 24 and a reverse primer of base sequence 75; And subjecting the DNA to a double real-time polymerase chain reaction using a probe for detecting an acidic non-Mycobacterium tuberculosis 16S rRNA gene including a probe of base sequence 27 and a probe of base sequence 76; And it provides a method for detecting the Mycobacterium tuberculosis and the acidic non-Tuberculosis bacteria comprising the step of confirming the results of the double real-time polymerase chain reaction.

The present invention relates to a primer set and/or probe for detection of Mycobacterium tuberculosis and Mycobacterium tuberculosis, which can detect gene sequences specific to Mycobacterium tuberculosis and Mycobacterium tuberculosis, and a detection kit containing the same, and a double real-time polymerase chain reaction method using the same. It is possible to provide a method for detecting Mycobacterium tuberculosis and Mycobacterium tuberculosis. According to the above method, it is possible to provide a clinical diagnosis means capable of more efficiently detecting Mycobacterium tuberculosis and/or Mycobacterium tuberculosis by using a primer and/or a probe specific for Mycobacterium tuberculosis and Mycobacterium tuberculosis.

1A to 3B show the results obtained from the double real-time polymerase chain reaction method of the strains.
1A and 1B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
2A and 2B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
3A and 3B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
4A to 6B show the results obtained from the double real-time polymerase chain reaction method of the strains.
4A and 4B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the yellow channel and the green channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
5A and 5B are graphs showing the change in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the yellow channel and the green channel of the double real-time polymerase chain reaction of NTM.
6A and 6B are the y-axis for the number of cycles of the polymerase chain reaction in the yellow and green channels of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
7A to 9B show the results obtained from the double real-time polymerase chain reaction method of the strains.
7A and 7B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
8A and 8B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
9A and 9B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
10A to 12B show the results obtained from the double real-time polymerase chain reaction method of the strains.
10A and 10B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
11A and 11B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
12A and 12B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
13A to 15B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F).
13A and 13B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
14A and 14B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
15A and 15B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
16A to 18B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F).
16A and 16B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
17A and 17B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
18A and 18B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.
19A to 21B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F).
19A and 19B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively.
20A and 20B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM.
21A and 21B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

Hereinafter, the present invention will be described in detail by reference examples and examples, but the following reference examples and examples are only illustrative of the present invention, and the content of the present invention is not limited thereto.

Reference example : Mycobacterium tuberculosis Anti-acid non-tuberculosis Search for specific sequence

1. Target and gene site

In the search for specific nucleotide sequences of Mycobacterium tuberculosis and Mycobacterium tuberculosis,M. abscessus (AJ419970.1, AJ416940.1, AJ536038),M. acapulcensis (AF480575.1),M. africanum(AF480605.1),M. agri (AJ429045.1),M. aichiense (X55598.1),M. alvei(NR_024859.1),M. asiaticum (X55604.1),M. aurum (FJ172298.1),M. austroafricanum(GU121552.1),M. avium (NR_025584.1, AJ536037.1, EF521892.1),M. bohemicum (NR_026054.1),M. botniense (NR_028878.1),M. bovis (GU142937.1),M. branderi (AF480574.1),M. brumae (NR_025233.1),M. celatum (L08169.1),M. chelonae (AM884324.1, AJ419969.1),M. chitae (NR_029220.1),M. chlorophenolicum(NR_026173.1),M. chubuense (X55596.1),M. confluentis (AJ634379.1),M. conspicuum (X029298.1),M. cookii (X53896.1),M. diernhoferi (AF480599.1),M. doricum (NR_025099.1),M. duvalii (NR_026073.1),M. engbaekii(AF480577.1),M. fallax (AF480600.1), M. farcinogenes (X55592.1),M. flavescens (AY734993.1),M. fortuitum (AY457066.1, AF480580.1, GU142933.1),M. gadium (NR_026087.1),M. gastri (GU142918.1),M. genavense (NR_029223.1),M. gilvum (AB491971.1),M. goodii (AY457079.1),M. gordonae (GU142923.1),M. haemophilum (V06638.1),M. hassiacum (NR_026011.1),M. heidelbergense(NR_025268.1),M. hiberniae (NR_026092.1),M. hodleri (NR_026286.1),M. immunogen (AJ011771.1),M. interjectum (X70961.1),M. intermedium(X67847.1),M. intracellulare (AY652958.1, AJ536036.1, X52927.1, M61684.1),M. kansasii (M29575.1, X15916.1),M. lentiflavum (AF480583.1),M. mageritense(AY457076.1),M. malmoense (GQ153278.1),M. marinum (AF456238.1, AY513243.1),M. microti (NR_025234.1),M. monacense (GU142931.1),M. moriokaense(AY859686.1),M. mucogenicum (AF480585.1),M. neoaurum (FJ172306.1),M. nonchromogenicum (DQ058406.1),M. obuense (X55597.1),M. paraffinicum(GQ153282.1),M. parafortuitum (NR_026285.1),M. peregrinum (AY457069.1), M. phlei (AF480603.1),M. porcinum (AY457077.1),M. poriferae (NR_025235.1), M. pulveris (NR_025528.1),M. rhodesiae (NR_025529.1),M. scrofulaceum(GQ153271.1),M. senuense (DQ536409.1), M. septicum (AY457070.1),M. shimoidei (X82459.1),M. simiae (GQ153280.1),M. smegmatis (NR_025311.1),M. sphagni (X55590.1),M. szulgai (X52926.1),M. terrae (NR_029168.1),M. thermoresistibile (GU142928.1),M. tilburgii (AJ580826.1),M. triplex (GQ153279.1),M. triviale (DQ058405.1),M. tuberculosis (GU142936.1, GU142935.1, AY53603.1, X55588.1, X52917.1),M. tusciae (NR_024903.1),M. ulcerans (Z13990.1),M. vaccae (X55601.1), M. wolinskyi (AY457083.1), M. xenopi The nucleotide sequence data of the 16S ribosomal RNA gene of (X52929.1) was used for analysis. The nucleotide sequence data of the 16S ribosomal RNA gene of the mycobacteria was obtained from the National Center for Biotechnology Information (NCBI) database.

The nucleotide sequence data of the 16S rRNA gene of the mycobacterial species was analyzed with Sequencher 4.9 to find a specific nucleotide sequence site. That is, the specific base sequence of Mycobacterium tuberculosis and the intrinsic base sequence of the acidic non-Mycobacterium tuberculosis that are not present in Mycobacterium tuberculosis were found.

Example 1: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 1

1. Design of detection target site and primer

Mycobacterium tuberculosis complex (MTC: M. tuberculosis , M.bovis, M. africanum , M. microti ) targets the IS6110 gene, and NTM uses the 16S rRNA gene as the target of Taqman probe. And primers were used. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis (MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatca-3' (base sequence 1)

b. Reverse primer: 5'-agtttggtcatcagccgttc-3' (base sequence 2)

3) Taqman probe

5′-VIC-agtgtggctaaccctgaa-MGB-3′ (base sequence 3)

4) Size of PCR product: 135 bp

(2) Anti-acid non-tuberculous bacteria (NTM)

1) Target gene: 16S rRNA

2) primer

a. Forward primer: 5'-ggyrayctgccctgcac-3' (base sequence 4)

b. Reverse primer

NTM-1: 5′-cccacaccgcaaaagctt-3′ (base sequence 5) or 5′-cccacaccgcaaaagct-3′ (base sequence 6) or 5′-tcccacaccgcaaaagct-3′ (base sequence 7)

NTM-2: 5'-catcccacaccgctaccw-3' (base sequence 8)

3) Taqman probe

5′-FAM-cggtattagacccagtttcc-MGB-3′ (base sequence 9)

4) PCR product size: 104 bp

<Example 1-1. Double real-time polymerase chain reaction method using a primer of base sequence 5 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

(1) Isolation of DNA

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. The ATCC standard strain was cultured and used in a liquid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged for 5 minutes at 14,000 rpm, and the supernatant was used as a template DNA for the polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing the denaturation process at about 95° C. for about 5 minutes in 1 cycle, denaturation at about 95° C. for about 15 seconds, and annealing and extension processes at about 66° C. for about 15 seconds in 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 4 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25uL was 25µl, the concentration of the primer was 0.5µM (12.5pmoles/25µl) and 0.2µM (5pmoles/25µl) for the probe was used. The concentration and volume of NTM forward and reverse primers and probes were used in the same manner as for MTC. The NTM-1 reverse primer was used in the same amount as the primer of base sequence 5 and the NTM-2 reverse primer was used in the same amount. The NTM-2 reverse primer was designed to have the same amount of 5'-catcccacaccgctacct-3' (base sequence 10) and 5'-catcccacaccgctacca-3' (base sequence 11). NTM forward primers are 5′-ggtaatctgccctgcac-3′ (base sequence 12), 5′-ggtaacctgccctgcac-3′ (base sequence 13), 5′-ggcaatctgccctgcac-3′ (base sequence 14), 5′-ggcaacctgccctgcac-3′ (Base sequence 15), 5′-ggtgatctgccctgcac-3′ (base sequence 16), 5′-ggtgacctgccctgcac-3′ (base sequence 17), 5′-ggcgatctgccctgcac-3′ (base sequence 18) and 5′-ggcgacctgccctgcac- As a primer set including 3'(base sequence 19), the primers of base sequence 12, base sequence 13, base sequence 14, base sequence 15, base sequence 16, base sequence 17, base sequence 18 and base sequence 19 are respectively about It was designed to contain a ratio of 1:1:1:1:1:1:1:1.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on the real-time monitor, and in the yellow channel (555±5nm) when ^{VIC TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

<Example 1-2. Double real-time polymerase chain reaction method using a primer of base sequence 6 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

The double real-time polymerase chain reaction method was performed in substantially the same manner as in Example 1-1 and the reverse primer of NTM-1, except that the primer of nucleotide sequence 6 was used.

<Example 1-3. Double real-time polymerase chain reaction method using a primer of nucleotide sequence 7 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

The double real-time polymerase chain reaction method was performed in substantially the same manner as in Example 1-1 and the reverse primer of NTM-1, except that the primer of nucleotide sequence 7 was used.

2. Results of double real-time polymerase chain reaction

1A to 3B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 1A and 1B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 2A and 2B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 3A and 3B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

Referring to Figures 1a to 3b, Mycobacterium tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is a 16S rRNA gene in the green channel, and Mycobacterium tuberculosis (MTC) + acidic non-Tuberculosis (NTM) is the yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens. It was found that it can be detected with.

Example 2. Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 2

1. Design of detection target site and primer

Mycobacterium tuberculosis complex (MTC: M. tuberculosis , M. bovis, M. africanum , M. microti ) targets the IS6110 gene, and NTM uses the 16S rRNA gene as the target of Taqman probe. And primers were used. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis (MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatca-3' (base sequence 1)

b. Reverse primer: 5'-cagggttagccacactttgc-3' (base sequence 20)

3) Taqman probe

5′-HEX-cgccaactacggtgtttacggtg-BHQ1-3′ (base sequence 21)

4) Size of PCR product: 79bp

(2) Anti-acid non-tuberculous bacteria (NTM)

1) Target gene: 16S rRNA

2) primer

a. Forward primer: 5′-gtggcgaacgggtgagtaa-3′ (base sequence 22)

b. Reverse primer

NTM-1: 5′-cccacaccgcaaaagctt-3′ (base sequence 5) or 5′-cccacaccgcaaaagct-3′ (base sequence 6) or 5′-tcccacaccgcaaaagct-3′ (base sequence 7)

NTM-2: 5′-catcccacaccgctaccw-3′ (base sequence 8)

3) Taqman probe

5′-FAM-cggtattagacccagtttcccaggct-BHQ1-3′ (base sequence 23)

4) PCR product size: 128 bp

<Example 2-1. Double real-time polymerase chain reaction method using a primer of base sequence 5 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

(1) Isolation of DNA

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. The ATCC standard strain was cultured and used in a liquid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing a denaturation process at about 95° C. for about 5 minutes in 1 cycle, denaturation at about 95° C. for about 10 seconds, annealing and extension processes at about 65° C. for about 15 seconds in 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 2 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25uL was 25µl, the concentration of the primer was 0.5µM (12.5pmoles/25µl) and 0.2µM (5pmoles/25µl) for the probe was used. The concentration and volume of NTM forward and reverse primers and probes were used in the same manner as for MTC. The NTM-1 reverse primer was used in the same amount as the primer of base sequence 5 and the NTM-2 reverse primer was used in the same amount. The NTM-2 reverse primer was designed to have the same amount of 5'-catcccacaccgctacct-3' (base sequence 10) and 5'-catcccacaccgctacca-3' (base sequence 11).

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on the real-time monitor, and in the yellow channel (555±5nm) when ^{VIC TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

<Example 2-2. Double real-time polymerase chain reaction method using a primer of base sequence 6 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

The double real-time polymerase chain reaction method was performed in substantially the same manner as in Example 2-1 and the reverse primer of NTM-1, except that the primer of nucleotide sequence 6 was used.

<Example 2-3. Double real-time polymerase chain reaction method using a primer of nucleotide sequence 7 as a reverse primer NTM-1 for detection of acidic non-Tuberculosis bacteria>

The double real-time polymerase chain reaction method was performed in substantially the same manner as in Example 2-1 and the reverse primer of NTM-1 except that the primer of nucleotide sequence 7 was used.

2. Results of double real-time polymerase chain reaction

4A to 6B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 4A and 4B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the yellow channel and the green channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 5A and 5B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the yellow channel and the green channel of the double real-time polymerase chain reaction of NTM. 6A and 6B are the y-axis for the number of cycles of the polymerase chain reaction in the yellow and green channels of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

Referring to Figures 4a to 6b, Mycobacterium tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is a 16S rRNA gene in the green channel, Mycobacterium tuberculosis (MTC) + Anti-acid non-Mycobacterium tuberculosis (NTM) is a yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens. It was found that it can be detected with.

Example 3: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 3

1. Design of detection target site and primer

Amplify the 16S rRNA gene region of mycobacteria with a common primer and specifically distinguish between M. tuberculosis (MTC: M. tuberculosis, M. bovis , M. africanum , M. microti) and acid-resistant non- tuberculous bacteria (NTM). The existing 16S rRNA base site was used as a Taqman probe. The Taqman probe for the detection target site was designed using the primer3 program.

(1) Common primer (target gene: 16S rRNA)

a. Forward primer: 5′-ggataagcytgggaaactgg-3′ (base sequence 24)

*b. Reverse primer: 5′-accccaccaacwagctgata-3′ (base sequence 25)

(2) Taqman probe (target gene: 16S rRNA)

a. Mycobacterium tuberculosis (MTC) Taqman probe

5′-VIC-tggtggaaagcgcttta-MGB-3′ (base sequence 26)

b. Taqman probe for acidic non-tuberculous bacteria

NTM-1: 5′-FAM-tggtggaaagcttttgc-MGB-3′ (base sequence 27)

NTM-2: 5′-FAM-tggaaagygtttggtagc-MGB-3′ (base sequence 28)

2. Double real-time polymerase chain reaction method

(1) Isolation of DNA

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains, 78 Mycobacterium tuberculosis strains, and 7 Mycobacteria standard strains isolated from clinical specimens were used. The ATCC standard strains used were M. tuberculosis (ATCC 25177), M. intracellulare (ATCC 13950), M. scrofulaceum (ATCC 19981), M. kansasii (ATCC 12478), M. fortuitum (ATCC 6841), M. abscessus ( ATCC 19977), M. avium (ATCC 25291).

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. The ATCC standard strain was cultured and used in a liquid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing the denaturation process at about 95° C. for about 5 minutes in 1 cycle, denaturation at about 95° C. for about 15 seconds, and annealing and extension processes at about 66° C. for about 15 seconds in 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 3 below. In the primer-probes Mix below, the forward and reverse primers of the common primer of Mycobacteria were contained in the same amount (10 pmole/µl), and the MTC probe, NTM-1 probe, and NTM-2 probe were each contained 4pmole/µl. Therefore, 1.25 µl of the primer-probes mix used in the reaction had 12.5 pmoles of the common primers, respectively, and 5 pmoles of the MTC, NTM-1, and NTM-2 probes were each included. Accordingly, the total volume of the reactants performing the polymerization chain reaction of a total of 25 μl is 25 μl, so the concentration of the primer is 0.5 μM (12.5 pmole/25 μl), and the probes of MTC, NTM-1, and NTM-2 are 0.2 μM ( 5pmole/25µl) was designed to have a concentration. In this case, the forward primers of base sequence 24 of mycobacteria were designed to exist in the same amount of 6.25 pmoles, which is the same amount of 5′-ggataagcctgggaaactgg-3′ (base sequence 29) and 5′-ggataagcttgggaaactgg-3′ (base sequence 30). In addition, the reverse primer of SEQ ID NO: 25 was designed so that 5'-accccaccaacaagctgata-3' (base sequence 31) and 5'-accccaccaactagctgata-3' (base sequence 32) were the same amount of 6.25 pmoles. In addition, the probe of base sequence 28, which is an NTM-2 probe, has the same amount of 5′-FAM-tggaaagcgtttggtagc-MGB-3′ (base sequence 33) and 5′-FAM-tggaaagtgtttggtagc-MGB-3′ (base sequence 34). It is designed to exist by pmoles.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on the real-time monitor, and in the yellow channel (555±5nm) when ^{VIC TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

3. Results of double real-time polymerase chain reaction

7A to 9B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 7A and 7B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 8A and 8B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 9A and 9B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

7A to 9B, Mycobacterium tuberculosis (MTC) is in the yellow channel, Mycobacterium tuberculosis (NTM) is in the green channel, Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM) is 16S rRNA in the green channel and the yellow channel, respectively. By confirming the expression of the gene, it was found that when using the primers and probes according to the present invention, it was possible to simultaneously detect Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens with high reliability by the double real-time polymerase chain reaction method.

Example 4: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 4

1. Design of detection target site and primer

Mycobacterium tuberculosis complex (MTC: M. tuberculosis , M.bovis, M. africanum , M. microti ) targets the IS6110 gene, and NTM uses the 16S rRNA gene as the target of Taqman probe. And primers were used. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis (MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatca-3' (base sequence 1)

b. Reverse primer: 5'-cagggttagccacactttgc-3' (base sequence 20)

3) Taqman probe

5′-HEX-cgccaactacggtgtttacggtg-BHQ1-3′ (base sequence 21)

4) Size of PCR product: 79bp

(2) Anti-acid non-tuberculous bacteria (NTM)

1) Target gene: 16S rRNA

2) primer

a. Forward primer: 5′-catgtyttstggkgsaaagctt-3′ (base sequence 35)

b. Reverse primer: 5′-cgtaggagtctgggccgta-3′ (base sequence 36)

3) Taqman probe

FAM-tagccggcctgagagggtg-BHQ1 (base sequence 37) or FAM-cctgagagggtgwccggcc-BHQ1 (base sequence 38) or FAM-cgggtagccggcctgagag-BHQ1 (base sequence 39)

4) Size of PCR product: 152bp

<Example 4-1. Double real-time polymerase chain reaction method using Taqman probe of nucleotide SEQ ID NO: 37 as a probe for detecting acidic non-Tuberculosis bacteria>

(1) Isolation of DNA

Tuberculosis bacteria 186 strains, anti-acid non-tuberculosis bacteria 78 strains, and mycobacteria standard strain 68 strains isolated from clinical specimens were used. The standard strains used were M. abscessus ATCC 19977, M. acapulcensis KCTC 9501, M. africanum ATCC 25420, M. agri KCTC 9502, M. alvei KCTC 19709, M. asiaticum KCTC 9503, M. aurum KCTC 19457, M. austroafricanum KCTC 9504, M. avium ATCC 25291, M. bolletii KCTC 19281, M. botniense KCTC 19646, M. bovis ATCC 19210, M. brumae KCTC 19711, M. celatum ATCC 51131, M. chelonae subsp chelonae KCTC 9505, M. chlorophenolicum KCTC 19089, M. chubuense KCTC 19712, M. diernhoferi KCTC 9506, M. fallax KCTC 9508, M. flavescens ATCC 14474, M. fortuitum ATCC 6841, M. frederiksbergense KCTC 19100, M. gadium ATCC 27726, M. gastri ATCC 15754, M. gilvum KCTC 19423, M. goodii ATCC BAA-955, M. gordonae KCTC 9513, M. haemophilum ATCC 29548, M. hassiacum ATCC 700660, M. interjectum ATCC 51457, M. intermedium ATCC 51848, M. intracellulare ATCC 13950, M. intracellulare KCTC 9514, M. kansasii ATCC 12478, M. lentiflavum KMRC 70087, M. malmoense ATCC 29571 , M. mantobense KCTC 9977, M. marinum ATCC 927, M. massiliense KCTC 19086, M. microti ATCC 19422, M. moriokaense KCTC 9516, M. mucogenicum KCTC 19088, M. neoaurum KCTC 19096, M. nonchromogenicum ATCC 19530, M. obuense KCTC 19097, M. parascrofulaceum KCTC 9979, M. peregrinum KCTC 9615, KMRC 75002 , M. phlei KCTC 9689, M. porcinum KCTC 9517, M. pulveris KCTC 9518, M. scrofulaceum ATCC 19981, M. septicum ATCC 700731, M. simiae ATCC 25275, M. . Shimoidei ATCC 27962, M. smegmatis KCTC 9108, M. szulgai KCTC 9520, KMRC 31125, M. terrae KCTC 9614, M. triplex ATCC 700071, M. triviale KMRC 70093, M. tuberculosis ATCC 25177, ATCC 27294, M. ulcerans ATCC 19423, M. vaccae KCTC 19087, M. vanbaalenii KCTC 9966 , M. wolinskyi ATCC 700010, M. xenopi KMRC 42001.

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. ATCC and KCTC strains were cultured and used in a liquid medium, and KMRC strains were cultured and used in a solid medium.

DNA of mycobacteria grown in liquid medium was extracted as follows. After mixing the MGIT mycobacteria culture tube in which the bacteria were cultured, 500 µl of the liquid medium was taken and put into a 1.5 ml tube and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

* The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing a denaturation process at about 95°C for about 5 minutes in 1 cycle, denaturation at about 95°C for about 12 seconds, annealing and extension processes at about 63°C for about 12 seconds in 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 4 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25 µl was 25 µl, the concentration of the primer was 0.5 µM (12.5 pmoles/25 µl) and 0.2 µM (5 pmoles/25 µl) for the probe was used. The concentrations of NTM forward and reverse primers and probes were used in the same manner as for MTC. At this time, the NTM forward primer (base sequence 35) is 5′-catgtcttgtgggggaaagctt-3′ (base sequence 40), 5′-catgttttgtgggggaaagctt-3′ (base sequence 41), 5′-catgtcttctgggggaaagctt-3′ (base sequence 42). , 5′-catgtcttgtggtggaaagctt-3′ (base sequence 43), 5′-catgtcttgtggggcaaagctt-3′ (base sequence 44), 5′-catgttttctgggggaaagctt-3′ (base sequence 45), 5′-catgtcttctggtggaaagctt-3′ (base sequence 46), 5′-catgtcttgtggtgcaaagctt-3′ (base sequence 47), 5′-catgttttgtggggcaaagctt-3′ (base sequence 48), 5′-catgtcttctggggcaaagctt-3′ (base sequence 49), 5′-catgttttgtggtggaaagctt-3′ ( Base sequence 50), 5′-catgttttctggtggaaagctt-3′ (base sequence 51), 5′-catgttttctggggcaaagctt-3′ (base sequence 52), 5′-catgttttgtggtgcaaagctt-3′ (base sequence 53), 5′-catgtcttctggtgcaaagctt-3 ′ (Base sequence 54) and 5′-catgttttctggtgcaaagctt-3′ (base sequence 55) are about 1:1:1:1:1:1:1:1:1:1:1:1:1:1 It was present in the same amount as :1.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on the real-time monitor, and in the yellow channel (555±5nm) when ^{Hex TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

<Example 4-2. Double real-time polymerase chain reaction method using Taqman probe of nucleotide sequence 38 as a probe for detecting acidic non-tuberculous bacteria>

The double real-time polymerase chain reaction method was carried out in substantially the same manner as in Example 4-1, except that the Taqman probe of base sequence 38 was used as a probe for detecting acidic non-Tuberculosis bacteria. The probe of base sequence 38 is designed to have the same amount of FAM-cctgagagggtgaccggcc-BHQ1 (base sequence 56) and FAM-cctgagagggtgtccggcc-BHQ1 (base sequence 57).

<Example 4-3. Double real-time polymerase chain reaction method using Taqman probe of nucleotide sequence 39 as a probe for detecting acidic non-tuberculous bacteria>

The double real-time polymerase chain reaction method was carried out in substantially the same manner as in Example 4-1, except that the Taqman probe of base sequence 39 was used as a probe for detecting acidic non-Tuberculosis bacteria.

2. Results of double real-time polymerase chain reaction

10A to 12B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 10A and 10B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 11A and 11B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 12A and 12B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

10A to 12B, M. tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is the 16S rRNA gene in the green channel, and Mycobacterium tuberculosis (MTC) + mycobacterium tuberculosis (NTM) is the yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens. It was found that it can be detected with.

Example 5: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 5

1. Design of detection target site and primer

Mycobacterium tuberculosis complex, MTC: M. tuberculosis , M.bovis, M. africanum , M. microti ) targets the IS6110 gene, and anti-acid non-tuberculous bacteria (NTM) targets the 16S rRNA gene, using Taqman probes and primers. Was used. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis (MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatcag-3' (base sequence 58)

b. Reverse primer: 5'-gagtttggtcatcagccgttc-3' (base sequence 59)

3) Taqman probe

5′-HEX-cgccaactacggtgtttacggtg-BHQ1-3′ (base sequence 21) or

5′-VIC-agtgtggctaaccctgaac-MGB-3′ (base sequence 60)

4) PCR product size: 136 bp

(2) Anti-acid non-tuberculous bacteria (NTM)

1) Target gene: 16S rRNA

2) primer

a. Forward primer: 5′-tggcgaacgggtgagtaa-3′ (base sequence 61)

b. Reverse primer

5′-cccacaccgcaaaagctt-3′ (base sequence 5)

5′-catcccacaccgctaccw-3′ (base sequence 8)

3) Taqman probe

5′-FAM-cggtattagacccagtttcccagg-BHQ1-3′ (base sequence 62) or

5′-FAM-tgggaaactgggtctaatac-MGB-3′ (base sequence 63)

4) Size of PCR product: 127bp

<Example 5-1. Double real-time polymerase chain reaction method using Taqman probe of base sequence 21 as a probe for detecting Mycobacterium tuberculosis (MTC) and Taqman probe of base sequence 62 as a probe for detecting acidic non-Tuberculosis>

(1) Isolation of DNA

Tuberculosis bacteria 186 strains, anti-acid non-tuberculosis bacteria 78 strains, and mycobacteria standard strain 68 strains isolated from clinical specimens were used. The standard strains used were M. abscessus ATCC 19977, M. acapulcensis KCTC 9501, M. africanum ATCC 25420, M. agri KCTC 9502, M. alvei KCTC 19709, M. asiaticum KCTC 9503, M. aurum KCTC 19457, M. austroafricanum KCTC 9504, M. avium ATCC 25291, M. bolletii KCTC 19281, M. botniense KCTC 19646, M. bovis ATCC 19210, M. brumae KCTC 19711, M. celatum ATCC 51131, M. chelonae subsp chelonae KCTC 9505, M. chlorophenolicum KCTC 19089, M. chubuense KCTC 19712, M. diernhoferi KCTC 9506, M. fallax KCTC 9508, M. flavescens ATCC 14474, M. fortuitum ATCC 6841, M. frederiksbergense KCTC 19100, M. gadium ATCC 27726, M. gastri ATCC 15754, M. gilvum KCTC 19423, M. goodii ATCC BAA-955, M. gordonae KCTC 9513, M. haemophilum ATCC 29548, M. hassiacum ATCC 700660, M. interjectum ATCC 51457, M. intermedium ATCC 51848, M. intracellulare ATCC 13950, M. intracellulare KCTC 9514, M. kansasii ATCC 12478, M. lentiflavum KMRC 70087, M. malmoense ATCC 29571 , M. mantobense KCTC 9977, M. marinum ATCC 927, M. massiliense KCTC 19086, M. microti ATCC 19422, M. moriokaense KCTC 9516 , M. mucogenicum KCTC 19088, M. neoaurum KCTC 19096, M. nonchromogenicum ATCC 19530, M. obuense KCTC 19097, M. parascrofulaceum KCTC 9979, M. peregrinum KCTC 9615, KMRC 75002, M. phlei KCTC 9689, M. porcinum KCTC 9517, M. pulveris KCTC 9518, M. scrofulaceum ATCC 19981, M. septicum ATCC 700731, M. simiae ATCC 25275, M. shimoidei ATCC 27962, M. smegmatis KCTC 9108, M. szulgai KCTC 9520, KMRC 31125, M. terrae KCTC 9614, M. triplex ATCC 700071, M. triviale KMRC 70093, M. tuberculosis ATCC 25177, ATCC 27294, M. ulcerans ATCC 19423, M. vaccae KCTC 19087, M. vanbaalenii KCTC 9966 , M. wolinskyi ATCC 700010, M. xenopi KMRC 42001.

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. ATCC and KCTC strains were cultured and used in a liquid medium, and KMRC strains were cultured and used in a solid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing a denaturation process at about 95° C. for about 5 minutes for 1 cycle, denaturation at about 95° C. for about 15 seconds, annealing and extension processes at about 65° C. for about 15 seconds as 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 5 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25uL was 25µl, the concentration of the primer was 0.5µM (12.5pmoles/25µl) and 0.2µM (5pmoles/25µl) for the probe was used. The concentrations of NTM forward and reverse primers and probes were used in the same manner as for MTC.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on a real-time monitor, and in the yellow channel (555±5nm) when ^{Hex TM} or VIC ^{TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

<Example 5-2. Double real-time polymerase chain reaction method using a Taqman probe of base sequence 21 as a probe for detecting Mycobacterium tuberculosis (MTC), and a Taqman probe of base sequence 63 as a probe for detecting acidic non-Tuberculosis>

Except for the use of a Taqman probe of base sequence 21 as a probe for detecting Mycobacterium tuberculosis (MTC) as in Example 5-1, and using a Taqman probe of base sequence 63 as a probe for detecting an acidic non-Tuberculosis bacteria, double real-time The polymerase chain reaction method was performed.

<Example 5-3. Double real-time polymerase chain reaction method using Taqman probe of base sequence 60 as a probe for detecting Mycobacterium tuberculosis (MTC), and Taqman probe of base sequence 62 as a probe for detecting acidic non-Tuberculosis>

Except for the use of the Taqman probe of SEQ ID NO: 60 as the probe for detecting Mycobacterium tuberculosis (MTC) as in Example 5-1, and the Taqman probe of SEQ ID NO: 62 as the probe for detecting Mycobacterium tuberculosis (MTC). The polymerase chain reaction method was performed.

<Example 5-4. Double real-time polymerase chain reaction method using a Taqman probe of base sequence 60 as a probe for detecting Mycobacterium tuberculosis (MTC) and a Taqman probe of base sequence 63 as a probe for detecting acidic non-Tuberculosis>

Except for the use of a Taqman probe of base sequence 60 as a probe for detecting Mycobacterium tuberculosis (MTC) as in Example 5-1, and a Taqman probe of base sequence 63 as a probe for detection of acidic non-Tuberculosis bacteria, double real-time The polymerase chain reaction method was performed.

2. Results of double real-time polymerase chain reaction

13A to 15B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 13A and 13B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 14A and 14B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 15A and 15B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

13A to 15B, M. tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is the 16S rRNA gene in the green channel, and Mycobacterium tuberculosis (MTC) + mycobacterium tuberculosis (NTM) is the yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens. It was found that it can be detected with.

Example 6: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 6

1. Design of detection target site and primer

Mycobacterium tuberculosis complex, MTC: M. tuberculosis , M.bovis, M. africanum , M. microti ) targets the IS6110 gene, and anti-acid non-tuberculous bacteria (NTM) targets the 16S rRNA gene, using Taqman probes and primers. Was used. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis complex, MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatcag-3' (base sequence 58)

b. Reverse primer: 5'-cagggttagccacactttgc-3' (base sequence 20)

3) Taqman probe

5′-Hex-cgccaactacggtgtttacggtg-BHQ1-3′ (base sequence 21) or

5′-VIC-ctacggtgtttacggtgc-MGB-3′ (base sequence 64)

4) Size of PCR product: 79bp

(2) Nontuberculous mycobacteria (NTM)

1) Target gene: 16S rRNA

2) primer

a. Forward primer

NTM-1: 5′-tktggtggaaagcttttgc-3′ (base sequence 65)

NTM-2: 5′-ggtgwgtggtgcaaagctt-3′ (base sequence 66)

NTM-3: 5'-tggtggaaagcgtttggt-3' (base sequence 67)

b. Reverse primer: 5′-cgtaggagtctgggccgta-3′ (base sequence 36)

3) Taqman probe

5′-FAM-cgggtagccggcctgagag-BHQ1-3′ (base sequence 39) or

5′-FAM-cctgagagggtgwccg-MGB-3′ (base sequence 68)

4) Size of PCR product: 146bp ~ 148bp

<Example 6-1. Double polymerase chain reaction method using Taqman probe of nucleotide sequence 21 as a probe for detecting Mycobacterium tuberculosis (MTC) and Taqman probe of nucleotide sequence 39 as a probe for detecting acidic non-Tuberculosis>

(1) Isolation of DNA

Tuberculosis bacteria 186 strains, anti-acid non-tuberculosis bacteria 78 strains, and mycobacteria standard strain 68 strains isolated from clinical specimens were used. The standard strain used is substantially the same as that mentioned in Example 5-1.

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. ATCC and KCTC strains were cultured and used in a liquid medium, and KMRC strains were cultured and used in a solid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing a denaturation process at about 95° C. for about 5 minutes in 1 cycle, denaturation at about 95° C. for about 15 seconds, annealing and extension processes at about 64° C. for about 15 seconds in 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 6 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25uL was 25µl, the concentration of the primer was 0.5µM (12.5pmoles/25µl) and 0.2µM (5pmoles/25µl) for the probe was used. The concentrations of NTM forward and reverse primers and probes were used in the same manner as for MTC.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on a real-time monitor, and in the yellow channel (555±5nm) when ^{Hex TM} or VIC ^{TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

<Example 6-2. Double real-time polymerase chain reaction method using Taqman probe of base sequence 21 as a probe for detecting Mycobacterium tuberculosis (MTC) and Taqman probe of base sequence 68 as a probe for detecting acidic non-Tuberculosis>

Except for the use of the Taqman probe of SEQ ID NO: 21 as the probe for detecting Mycobacterium tuberculosis (MTC) as in Example 6-1, and the Taqman probe of SEQ ID NO: 68 as the probe for detecting acidic non-Tuberculosis bacteria, double real-time The polymerase chain reaction method was performed.

<Example 6-3. Double real-time polymerase chain reaction method using a Taqman probe of base sequence 64 as a probe for detecting Mycobacterium tuberculosis (MTC) and a Taqman probe of base sequence 39 as a probe for detecting acidic non-Tuberculosis>

Except for the use of the Taqman probe of SEQ ID NO: 64 as a probe for detecting Mycobacterium tuberculosis (MTC) as in Example 6-1, and using the Taqman probe of SEQ ID NO: 39 as a probe for detecting an acidic non-Tuberculosis bacteria, double real-time The polymerase chain reaction method was performed.

<Example 6-4. Double real-time polymerase chain reaction method using Taqman probe of base sequence 64 as a probe for detecting Mycobacterium tuberculosis (MTC), and Taqman probe of base sequence 68 as a probe for detecting acidic non-Tuberculosis>

Except for the use of the Taqman probe of base sequence 64 as a probe for detecting Mycobacterium tuberculosis (MTC) as in Example 6-1, and using the Taqman probe of base sequence 68 as a probe for detection of acidic non-Tuberculosis bacteria, double real-time The polymerase chain reaction method was performed.

2. Results of double real-time polymerase chain reaction

16A to 18B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 16A and 16B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 17A and 17B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 18A and 18B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

16A to 18B, M. tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is the 16S rRNA gene in the green channel, and Mycobacterium tuberculosis (MTC) + mycobacterium tuberculosis (NTM) is the yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical specimens. It was found that it can be detected with.

Example 7: Mycobacterium tuberculosis Anti-acid non-tuberculosis Separation detection method 7

1. Design of detection target site and primer

Mycobacterium tuberculosis complex, MTC: M. tuberculosis , M.bovis, M. africanum , M. microti) targets the IS6110 gene, and the acid-resistant non- tuberculosis (NTM) is 16S rRNA that can specifically distinguish the 16S rRNA gene. The base site was used as a Taqman probe. In the case of the 16S rRNA gene, a primer capable of amplifying the 16S rRNA gene region of Mycobacteria was used as a common primer. The primer for the detection target site was designed using the Primer3 program.

(1) Mycobacterium tuberculosis complex, MTC)

1) Target gene: IS6110

2) primer

a. Forward primer: 5'-cgaactcaaggagcacatcag-3' (base sequence 58)

b. Reverse primer: 5'-gagtttggtcatcagccgttc-3' (base sequence 59)

3) Taqman probe

5′-VIC-agtgtggctaaccctgaac-MGB-3′ (base sequence 60)

4) PCR product size: 136 bp

(2) Nontuberculous mycobacteria (NTM)

1) Target gene: 16S rRNA

*2) Primer

a. Forward primer: 5'-ggataagcytgggaaactgg-3' (base sequence 24)

b. Reverse primer: 5'-cgtaggagtctgggccgta-3' (base sequence 75)

3) Taqman probe

NTM-1: 5′-FAM-tggtggaaagcttttgc-MGB-3′ (base sequence 27)

NTM-2: 5′-FAM-ccacaccgctaccaaac-MGB-3′ (base sequence 76)

4) PCR product size: 205 bp

2. Double real-time polymerase chain reaction method

(1) Isolation of DNA

Tuberculosis bacteria 186 strains, anti-acid non-tuberculosis bacteria 78 strains, and mycobacteria standard strain 68 strains isolated from clinical specimens were used. The standard strain used is substantially the same as that mentioned in Example 5-1.

186 Mycobacterium tuberculosis strains and 78 Mycobacterium tuberculosis strains isolated from clinical specimens were either detected in liquid medium (MGIT mycobacteria medium) or solid (Ogawa medium) medium, or were directly detected in sputum specimens. ATCC and KCTC strains were cultured and used in a liquid medium, and KMRC strains were cultured and used in a solid medium.

The DNA of mycobacteria grown in liquid medium was extracted as follows. After the MGIT mycobacteria culture tube in which the bacteria were cultured was well mixed, 500 µl of the liquid medium was taken, put into a 1.5 ml tube, and centrifuged at 14,000 rpm for 5 minutes. After centrifugation, the supernatant was discarded, and 300 µl of sterile distilled water was added to the remaining saliva portion and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

The DNA of mycobacteria grown in solid medium was extracted as follows. 500 µl of sterile distilled water was added to a 1.5 ml tube, and 1 platinum was taken from the solid medium and dissolved in sterile distilled water. The tube was heated in boiling water for 10 minutes and then centrifuged at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

Sputum specimens were treated as follows. The sputum was liquefied by adding 1N NaOH in an amount equal to the amount of sputum contained in a 15 ㎖ or 50 ㎖ tube, and allowed to stand for 10 minutes. After centrifugation at 14,000 rpm for 2 minutes, the supernatant was discarded, 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, and centrifuged at 14,000 rpm for 2 minutes to remove the supernatant. 1 ml of sterile distilled water was added to the remaining precipitate, mixed well for 10 seconds, centrifuged at 14,000 rpm for 2 minutes, and the supernatant was discarded. The supernatant was removed, and 100 µl of 5% chelex resin (Biorad, USA) and 1 µl of 10 mg/ml proteinase K were added to the remaining precipitate and mixed well. After standing at 56° C. for 15 minutes, the mixture was mixed well and heated in a boiling water for 10 minutes in a bath. After heating in a bath, centrifugation was performed at 14,000 rpm for 5 minutes, and the supernatant was used as a template DNA for polymerase chain reaction.

(2) Double real-time polymerase chain reaction method

Double real-time polymerase chain reaction was performed using a Rotor-Gene multiplex PCR Kit (QIAGEN Inc., Germantown, MD, USA). Of these, the real-time polymerase chain reaction was performed using Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). 40 cycles were performed by performing a denaturation process at about 95° C. for about 5 minutes for 1 cycle, denaturation at about 95° C. for about 15 seconds, annealing and extension processes at about 65° C. for about 15 seconds as 1 cycle. At this time, the composition of the reactants for performing the real-time polymerase chain reaction are shown in Table 7 below. In the primer-probes Mix below, the forward primer and the reverse primer were contained in the same amount (10 pmole/µl), and the probe was 4 pmole/µl. Therefore, in 1.25 µl of MTC primer-probes mix used in the reaction, the forward and reverse primers were 12.5 pmoles, respectively, and 5 pmoles were included in the probe. Since the total volume of the reactants performing the polymerization chain reaction of 25uL was 25µl, the concentration of the primer was 0.5µM (12.5pmoles/25µl) and 0.2µM (5pmoles/25µl) for the probe was used. The concentrations of NTM forward and reverse primers and probes were used in the same manner as for MTC.

ingredient Volume (µl) density 2X Rotor-Gene Multiplex PCR Master Mix 12.5 1X Primers-Probes Mix Primer (10pmole/µl) 1.25 0.5uM Probe (4pmole/µl) 0.2uM Nuclease free water 6.25 - Sample DNA template 5 - all 25 -

The fluorescence generated by the probe in the binding and extension steps during the real-time polymerase chain reaction was measured in Rotor-Gene Q (QIAGEN Inc., Germantown, MD, USA). The real-time polymerase chain reaction method is a method of detecting and quantifying fluorescence performed in real time every cycle of the real-time polymerase chain reaction by the principle of DNA polymerase and fluorescence resonance energy transfer (FRET). . It was designated to display in the green channel (510±5nm) when ^{FAM TM} is colored on the real-time monitor, and in the yellow channel (555±5nm) when ^{VIC TM is colored.} Fluorescence was observed in the green channel and the yellow channel.

3. Results of double real-time polymerase chain reaction

19A to 21B show the results obtained from the double real-time polymerase chain reaction method of the strains. In the graphs, the x-axis is the number of cycles of the polymerase chain reaction and the y-axis is the fluorescence intensity (F). 19A and 19B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC), respectively. 20A and 20B are graphs showing changes in fluorescence intensity of the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of NTM. 21A and 21B are the y-axis for the number of cycles of the polymerase chain reaction in the green channel and the yellow channel of the double real-time polymerase chain reaction of Mycobacterium tuberculosis (MTC) + Mycobacterium tuberculosis (NTM), respectively. It is a graph.

19A to 21B, M. tuberculosis (MTC) is the IS6110 gene in the yellow channel, anti-acid non-Tuberculosis (NTM) is the 16S rRNA gene in the green channel, and Mycobacterium tuberculosis (MTC) + mycobacterium tuberculosis (NTM) is the yellow channel, respectively. It shows the result that the IS6110 gene and the 16S rRNA gene are specifically amplified in the green channel. When using the primers and probes of the present invention, the double real-time polymerase chain reaction method provides high reliability for both Mycobacterium tuberculosis and Mycobacterium tuberculosis in clinical samples It was found that it can be detected with.

Through the present examples, the specific base sequence of Mycobacterium tuberculosis and the intrinsic base sequence of the acidic non-Mycobacterium tuberculosis that is not present in Mycobacterium tuberculosis are forward primers or reverse primers; And/or designing as a probe, producing a test kit, and using the double real-time polymerase chain reaction method, when evaluating the standard strains used to search for specific nucleotide sequences of the Mycobacterium tuberculosis and the acidic non-Mycobacterium tuberculosis. It was confirmed that it is a means to evaluate the acid-resistant non-tuberculous bacteria. Accordingly, it is possible to provide a means for effectively detecting various types of Mycobacterium tuberculosis and Mycobacterium tuberculosis.

According to the present embodiments, the primers and/or probes for detecting Mycobacterium tuberculosis and Mycobacterium tuberculosis, which can detect gene sequences specific to Mycobacterium tuberculosis and Mycobacterium tuberculosis, have high diagnostic sensitivity and specificity for Mycobacterium tuberculosis and Mycobacterium tuberculosis. In addition, according to the double real-time polymerase chain reaction method using primers and/or probes for detecting Mycobacterium tuberculosis and Mycobacterium tuberculosis according to the present embodiments, a clinical diagnosis means that can more efficiently detect Mycobacterium tuberculosis and Mycobacterium tuberculosis in a specimen at the same time. Can provide.

<110> UNIVERSITY OF ULSAN FOUNDATION FOR INDUSTRY COOPERATION <120> METHODS FOR IDENTIFICATION AND DETECTION OF MYCOBACTERIUM TUBERCULOSIS COMPLEX AND NONTUBERCULOUS MYCOBACTERIA USING DUPLEX REAL TIME POLYMERASE CHAIN REACTION <130> DP-2010-0773 <150> KR 10-2010-0049692 <151> 2010-05-27 <150> KR 10-2010-0062847 <151> 2010-06-30 <160> 76 <170> KopatentIn 1.71 <210> 1 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 1 cgaactcaag gagcacatca 20 <210> 2 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> reverse primer for amplification specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 2 agtttggtca tcagccgttc 20 <210> 3 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 3 agtgtggcta accctgaa 18 <210> 4 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 4 ggyrayctgc cctgcac 17 <210> 5 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 5 cccacaccgc aaaagctt 18 <210> 6 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 6 cccacaccgc aaaagct 17 <210> 7 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 7 tcccacaccg caaaagct 18 <210> 8 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 8 catcccacac cgctaccw 18 <210> 9 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 9 cggtattaga cccagtttcc 20 <210> 10 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 10 catcccacac cgctacct 18 <210> 11 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> reverse primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 11 catcccacac cgctacca 18 <210> 12 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 12 ggtaatctgc cctgcac 17 <210> 13 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 13 ggtaacctgc cctgcac 17 <210> 14 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 14 ggcaatctgc cctgcac 17 <210> 15 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 15 ggcaacctgc cctgcac 17 <210> 16 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 16 ggtgatctgc cctgcac 17 <210> 17 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 17 ggtgacctgc cctgcac 17 <210> 18 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 18 ggcgatctgc cctgcac 17 <210> 19 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 19 ggcgacctgc cctgcac 17 <210> 20 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> reverse primer for amplification specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 20 cagggttagc cacactttgc 20 <210> 21 <211> 23 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 21 cgccaactac ggtgtttacg gtg 23 <210> 22 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 22 gtggcgaacg ggtgagtaa 19 <210> 23 <211> 26 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 23 cggtattaga cccagtttcc caggct 26 <210> 24 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> forward universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 24 ggataagcyt gggaaactgg 20 <210> 25 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> reverse universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 25 accccaccaa cwagctgata 20 <210> 26 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Mycobacterium tuberculosis complex <400> 26 tggtggaaag cgcttta 17 <210> 27 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> probe(NTM-1) for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 27 tggtggaaag cttttgc 17 <210> 28 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> probe(NTM-2) for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 28 tggaaagygt ttggtagc 18 <210> 29 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> forward universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 29 ggataagcct gggaaactgg 20 <210> 30 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> forward universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 30 ggataagctt gggaaactgg 20 <210> 31 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> reverse universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 31 accccaccaa caagctgata 20 <210> 32 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> reverse universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 32 accccaccaa ctagctgata 20 <210> 33 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> probe(NTM-2) for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 33 tggaaagcgt ttggtagc 18 <210> 34 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> probe(NTM-2) for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 34 tggaaagtgt ttggtagc 18 <210> 35 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 35 catgtyttst ggkgsaaagc tt 22 <210> 36 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> reverse primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 36 cgtaggagtc tgggccgta 19 <210> 37 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 37 tagccggcct gagagggtg 19 <210> 38 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 38 cctgagaggg tgwccggcc 19 <210> 39 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 39 cgggtagccg gcctgagag 19 <210> 40 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 40 catgtcttgt gggggaaagc tt 22 <210> 41 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 41 catgttttgt gggggaaagc tt 22 <210> 42 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 42 catgtcttct gggggaaagc tt 22 <210> 43 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 43 catgtcttgt ggtggaaagc tt 22 <210> 44 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 44 catgtcttgt ggggcaaagc tt 22 <210> 45 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 45 catgttttct gggggaaagc tt 22 <210> 46 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 46 catgtcttct ggtggaaagc tt 22 <210> 47 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 47 catgtcttgt ggtgcaaagc tt 22 <210> 48 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 48 catgttttgt ggggcaaagc tt 22 <210> 49 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 49 catgtcttct ggggcaaagc tt 22 <210> 50 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 50 catgttttgt ggtggaaagc tt 22 <210> 51 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 51 catgttttct ggtggaaagc tt 22 <210> 52 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 52 catgttttct ggggcaaagc tt 22 <210> 53 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 53 catgttttgt ggtgcaaagc tt 22 <210> 54 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 54 catgtcttct ggtgcaaagc tt 22 <210> 55 <211> 22 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 55 catgttttct ggtgcaaagc tt 22 <210> 56 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 56 cctgagaggg tgaccggcc 19 <210> 57 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 57 cctgagaggg tgtccggcc 19 <210> 58 <211> 21 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 58 cgaactcaag gagcacatca g 21 <210> 59 <211> 21 <212> DNA <213> Artificial Sequence <220> <223> reverse primer for amplification specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 59 gagtttggtc atcagccgtt c 21 <210> 60 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 60 agtgtggcta accctgaac 19 <210> 61 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> forward primer for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 61 tggcgaacgg gtgagtaa 18 <210> 62 <211> 24 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 62 cggtattaga cccagtttcc cagg 24 <210> 63 <211> 20 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 63 tgggaaactg ggtctaatac 20 <210> 64 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of IS6110 gene in Mycobacterium tuberculosis complex <400> 64 ctacggtgtt tacggtgc 18 <210> 65 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 65 tktggtggaa agcttttgc 19 <210> 66 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 66 ggtgwgtggt gcaaagctt 19 <210> 67 <211> 18 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-3) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 67 tggtggaaag cgtttggt 18 <210> 68 <211> 16 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 68 cctgagaggg tgwccg 16 <210> 69 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 69 tgtggtggaa agcttttgc 19 <210> 70 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-1) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 70 tttggtggaa agcttttgc 19 <210> 71 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 71 ggtgagtggt gcaaagctt 19 <210> 72 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> forward primer (NTM-2) for amplification specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 72 ggtgtgtggt gcaaagctt 19 <210> 73 <211> 16 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 73 cctgagaggg tgaccg 16 <210> 74 <211> 16 <212> DNA <213> Artificial Sequence <220> <223> probe for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 74 cctgagaggg tgtccg 16 <210> 75 <211> 19 <212> DNA <213> Artificial Sequence <220> <223> reverse universal primer for amplification specific fragments of 16S rRNA gene in Mycobacterium <400> 75 cgtaggagtc tgggccgta 19 <210> 76 <211> 17 <212> DNA <213> Artificial Sequence <220> <223> probe(NTM-2) for detection of specific fragments of 16S rRNA gene in Nontuberculous mycobacteria <400> 76 ccacaccgct accaaac 17

Claims (6)

Forward primer of SEQ ID NO: 22;
One or two or more reverse primers selected from the group consisting of a primer of SEQ ID NO: 5, a primer of SEQ ID NO: 6, and a primer of SEQ ID NO: 7; And
A primer set specific for 16S rRNA gene of non-acidic mycobacterium tuberculosis comprising a reverse primer of nucleotide sequence 8. A probe for detecting an acidic non-TB bacterium 16S rRNA gene of SEQ ID NO: 23. 3. The fluorescent labeling agent of claim 2, wherein the 5 ′ end of the probe is selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED. Probe for detection of non-acidic Mycobacterium tuberculosis 16S rRNA gene, characterized in that the 3 'end is labeled with one fluorescent inhibitor selected from the group consisting of 6-TAMRA and BHQ-1,2,3. A primer set specific for the IS6110 gene of Mycobacterium tuberculosis comprising a forward primer of SEQ ID NO: 1 and a reverse primer of SEQ ID NO: 20;
A probe for detecting the Mycobacterium tuberculosis IS6110 gene of SEQ ID NO: 21;
16S of the anti-acidic tuberculosis bacterium comprising one or more reverse primers selected from the group consisting of a forward primer of nucleotide sequence 22, a primer of nucleotide sequence 5, a primer of nucleotide sequence 6 and a primer of nucleotide sequence 7 and a reverse primer of nucleotide sequence 8 primer sets specific for rRNA genes; And
Mycobacterium tuberculosis and anti-acidic tuberculosis detection kit comprising a probe for detecting the acidic non-tuberculosis 16S rRNA gene of SEQ ID NO: 23. According to claim 4, wherein the 5 'end of the Mycobacterium tuberculosis IS6110 gene detection probe is selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670 and NED. Labeled with a fluorescent labeling factor of 3 ′, and labeled with one fluorescence inhibitor (Quencher) selected from the group consisting of 6-TAMRA and BHQ-1,2,3,
One fluorescent label selected from the group consisting of FAM, VIC, TET, JOE, HEX, CY3, CY5, ROX, RED610, TEXAS RED, RED670, and NED at the 5 ′ end of the anti-acidic Mycobacterium tuberculosis 16S rRNA gene detection probe. Labeled with a factor, and the 3 ′ end is labeled with one fluorescence inhibitor selected from the group consisting of 6-TAMRA and BHQ-1,2,3,
Mycobacterium tuberculosis and anti-acidic tuberculosis detection kit, characterized in that the 5 'end of the probe for detecting the IS6110 gene of the tuberculosis and 5' end of the non-acidic tuberculosis 16S rRNA gene detection probe is labeled with different fluorescent labeling factors. Separating DNA from the sample;
A primer set specific for the IS6110 gene of Mycobacterium tuberculosis comprising a forward primer of SEQ ID NO: 1 and a reverse primer of SEQ ID NO: 20; A probe for detecting the Mycobacterium tuberculosis IS6110 gene of SEQ ID NO: 21; 16S of the anti-acidic tuberculosis bacterium comprising one or more reverse primers selected from the group consisting of a forward primer of nucleotide sequence 22, a primer of nucleotide sequence 5, a primer of nucleotide sequence 6 and a primer of nucleotide sequence 7 and a reverse primer of nucleotide sequence 8 primers specific for rRNA genes; And performing double real-time polymerase chain reaction of the DNA using a probe for detecting an acidic non-TB bacterium 16S rRNA gene of SEQ ID NO: 23; And
Method for detecting tuberculosis bacteria and non-acidic tuberculosis bacteria comprising the step of confirming the double real-time polymerase chain reaction results.

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