KR102254686B1 - Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis - Google Patents

Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis Download PDF

Info

Publication number
KR102254686B1
KR102254686B1 KR1020200002494A KR20200002494A KR102254686B1 KR 102254686 B1 KR102254686 B1 KR 102254686B1 KR 1020200002494 A KR1020200002494 A KR 1020200002494A KR 20200002494 A KR20200002494 A KR 20200002494A KR 102254686 B1 KR102254686 B1 KR 102254686B1
Authority
KR
South Korea
Prior art keywords
liver cancer
linc00853
exosomes
serum
composition
Prior art date
Application number
KR1020200002494A
Other languages
Korean (ko)
Inventor
은정우
김순선
정재연
조효정
백금옥
Original Assignee
아주대학교산학협력단
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by 아주대학교산학협력단 filed Critical 아주대학교산학협력단
Priority to KR1020200002494A priority Critical patent/KR102254686B1/en
Priority to KR1020210059286A priority patent/KR102258096B1/en
Priority to KR1020210059285A priority patent/KR102258095B1/en
Priority to KR1020210059287A priority patent/KR102258097B1/en
Application granted granted Critical
Publication of KR102254686B1 publication Critical patent/KR102254686B1/en

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Pathology (AREA)
  • Analytical Chemistry (AREA)
  • Zoology (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Hospice & Palliative Care (AREA)
  • Biophysics (AREA)
  • Oncology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The present invention relates to a serum exosome long non-coding RNA marker composition for early diagnosing liver cancer for non-invasive in vitro diagnosis. To find a novel serum liver cancer biomarker, lncRNAs, which are specifically overexpressed in liver cancer exosomes, are identified by analyzing lncRNA inside exosomes secreted by liver cancer cells, so as to discover a novel serum biomarker with high diagnostic accuracy in early liver cancer for which there is currently no reliable biomarker. As such, by using exosomes to check a cancer cell genome and proteome without biopsy, the composition is highly likely to be utilized as an effective diagnostic biomarker in a disease group with a high risk of biopsy, such as liver cancer, in the future.

Description

비침습적 체외진단을 위한 조기간암 진단용 혈청 엑소좀 긴 비번역 RNA 마커 조성물{Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis}Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis

본 발명은 비침습적 체외진단을 위한 조기간암 진단용 혈청 엑소좀 긴 비번역 RNA(Long non-coding RNA; lncRNA) 마커 조성물에 관한 것이다.The present invention relates to a serum exosome long non-coding RNA (lncRNA) marker composition for diagnosing early stage cancer for non-invasive in vitro diagnosis.

간암은 한국인에게 많이 생기는 암종 중 하나로, 2015년에는 발생률이 10만명당 남자 29.5명, 여자 8.2명으로 남성에서 4위, 여성에서 6위를 차지하였고, 사망률도 높아 2015년 전체 암사망자 중 간암이 남성에서 2위, 여성에서 3위를 차지할 만큼 예후가 나쁜 악성 종양이다.Liver cancer is one of the most common carcinomas of Koreans. In 2015, the incidence rate was 29.5 for men and 8.2 for women, ranking 4th among men and 6th among women. In 2015, liver cancer was male among all cancer deaths in 2015. It is a malignant tumor with a poor prognosis enough to occupy 2nd place in and 3rd place in women.

간암 환자 대부분은 기저 간경변증으로 인해 조직 검사시 출혈의 위험성이 높아 상당한 위험을 부담해야 하는데, 이에, 혈액을 기반으로 간암을 조기 진단하고 유전 정보를 획득하는 액체 생검 기술 (Liquid biopsy) 개발이 필요하다. 조직검사는 상당한 위험 부담을 감수해야 하는 것에 비해 혈액으로 진단이 가능하므로 침습적이지 않고 간편하다. 혈액은 조직검사와 달리 치료 과정 중 여러 번 채혈이 가능, 치료 과정 중 치료 반응이나 잔존암 예측에 적합하다.Most of the liver cancer patients have a high risk of bleeding due to the underlying cirrhosis of the liver, so they have to bear a significant risk.Therefore, it is necessary to develop a liquid biopsy technology that diagnoses liver cancer early and acquires genetic information based on blood. . Biopsy is not invasive and simple because it can be diagnosed with blood, compared to taking a considerable risk. Unlike a biopsy, blood can be collected several times during the treatment process, and is suitable for predicting treatment response or residual cancer during the treatment process.

엑소좀 (exosome)은 암세포를 포함한 대부분의 유핵 세포로부터 생성/분비되는 30-150nm 크기의 작은 나노 소포체 (nano-vesicle)로서, 액체 생검 기술의 선두 주자로 혈액, 소변, 복수, 타액 등 다양한 체액에서 검출되는데, 모세포 (parent cell)의 특이 유전 정보를 수하물(exosomal cargo)로 싣고, 표적 세포에 전달한다. 최근, 엑소좀은 세포-세포간 교류 (cell-cell communication)의 핵심 물질로 주목받고 있으며, 암세포 유래 엑소좀은 종양 침투 및 전이의 핵심 물질로 지목되고 있다. 암세포 엑소좀은 모세포 유전 정보를 종양 미세환경의 다른 표적 세포에 전달하여 정상 세포를 악성화시키는데, 모세포인 암세포 아바타 역할을 수행하는 것으로 추측되고 있다.Exosomes are small nano-vesicles with a size of 30-150nm that are produced/secreted from most nucleated cells including cancer cells. As a leader in liquid biopsy technology, various body fluids such as blood, urine, ascites, and saliva It is detected in, and carries the specific genetic information of the parent cell as an exosomal cargo and delivers it to the target cell. Recently, exosomes are attracting attention as a key material for cell-cell communication, and cancer cell-derived exosomes have been pointed out as a key material for tumor penetration and metastasis. Cancer cell exosomes transfer parental genetic information to other target cells in the tumor microenvironment to malignize normal cells, and are believed to play the role of parental cancer cell avatars.

한편, 이전부터 간암 진단 마커로 활용되는 알파태아단백(alpha-fetoprotein; AFP)의 경우, 간암 진단 예민도가 60% 가량에 불과한데, 현재까지 간암은 신뢰성 있는 혈청 바이오마커가 없어, 조기 진단 및 예후, 치료 반응 예측을 위한 차세대 혈청 간암 바이오마커 발굴이 절실한 상황이다.Meanwhile, in the case of alpha-fetoprotein (AFP), which has been previously used as a diagnostic marker for liver cancer, the sensitivity of liver cancer diagnosis is only about 60%. However, there is an urgent need to discover next-generation serum liver cancer biomarkers for predicting treatment response.

중국공개특허 CN 106967820 A (2017.07.21 공개)Chinese Patent Publication CN 106967820 A (published on July 21, 2017)

본 발명의 목적은 긴 비번역 RNA LINC00853를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공하는데 있다.An object of the present invention is to provide a biomarker composition for diagnosis of liver cancer comprising a long untranslated RNA LINC00853 as an active ingredient.

또한, 본 발명의 다른 목적은 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물 및 이를 포함하는 간암 진단용 키트를 제공하는데 있다.In addition, another object of the present invention is to provide a liver cancer diagnostic composition comprising as an active ingredient an agent capable of measuring the expression level of long untranslated RNA LINC00853, and a liver cancer diagnostic kit comprising the same.

또한, 본 발명의 또 다른 목적은 긴 비번역 RNA LINC00853의 발현수준을 측정하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공하는데 있다.In addition, another object of the present invention is to provide a method of providing information necessary for diagnosis of liver cancer comprising the step of measuring the expression level of long untranslated RNA LINC00853.

상기 목적을 달성하기 위하여, 본 발명은 긴 비번역 RNA LINC00853를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공한다.In order to achieve the above object, the present invention provides a biomarker composition for diagnosing liver cancer comprising a long untranslated RNA LINC00853 as an active ingredient.

또한, 본 발명은 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물을 제공한다.In addition, the present invention provides a composition for diagnosing liver cancer comprising, as an active ingredient, an agent capable of measuring the expression level of long untranslated RNA LINC00853.

또한, 본 발명은 상기 조성물을 포함하는 간암 진단용 키트를 제공한다.In addition, the present invention provides a liver cancer diagnostic kit comprising the composition.

또한, 본 발명은 (1) 환자에서 분리된 시료로부터 긴 비번역 RNA LINC00853의 발현수준을 측정하는 단계; (2) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준을 대조군 시료와 비교하는 단계; 및 (3) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준이 대조군 시료보다 높을 경우 간암으로 판단하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공한다.In addition, the present invention (1) measuring the expression level of the long untranslated RNA LINC00853 from the sample isolated from the patient; (2) comparing the measured expression level of the long untranslated RNA LINC00853 with a control sample; And (3) it provides a method of providing information necessary for liver cancer diagnosis comprising the step of determining the liver cancer when the measured expression level of the long untranslated RNA LINC00853 is higher than that of the control sample.

본 발명은 비침습적 체외진단을 위한 조기간암 진단용 혈청 엑소좀 긴 비번역 RNA 마커 조성물에 관한 것으로서, 새로운 혈청 간암 바이오마커를 찾기 위해 간암 세포가 분비하는 엑소좀 내부의 lncRNA를 분석하여, 간암 엑소좀에서 특이적으로 과발현되는 lncRNA를 규명하여, 현재 신뢰성 있는 바이오마커가 없는 조기 간암에서 진단적 정확도가 높은 새로운 혈청 바이오마커를 발굴하였다. 이와 같이, 엑소좀을 이용하여 조직 검사 없이 암세포 유전체 및 단백체를 확인함으로, 향후 간암처럼 조직 검사에 따른 위험이 큰 질환군에서 유용한 진단 바이오마커로 활용될 가능성이 매우 높다.The present invention relates to a serum exosome long non-translated RNA marker composition for early stage cancer diagnosis for non-invasive in vitro diagnosis, by analyzing lncRNA inside exosomes secreted by liver cancer cells to find new serum liver cancer biomarkers, liver cancer exosomes By identifying the lncRNA that is specifically overexpressed in, we discovered a new serum biomarker with high diagnostic accuracy in early liver cancer, which does not currently have a reliable biomarker. As described above, since exosomes are used to identify cancer cell genomes and proteins without tissue examination, it is highly likely to be used as a useful diagnostic biomarker in disease groups with a high risk of tissue examination, such as liver cancer in the future.

도 1은 엑소좀 정제 및 분리를 위한 모식도이다.
도 2는 LINC00853의 간암 코호트에서의 과발현과 임상적 연관성을 나타낸다.
도 3은 간암 환자 혈액에서의 Exosomal LINC00853 과발현 결과를 나타낸다.
도 4는 단계별 간질환에서의 LINC00853의 발현과 AUROC 결과를 나타낸다.
도 5는 mUICC 병기별 환자에서의 AF와 비교 ROC 분석 결과를 나타낸다.
도 6은 각 질환군 AFP와 LINC00853의 양성율 및 간암 환자의 AFP 양성 유무에 따른 LINC00853 양성율 평가를 나타낸다.
1 is a schematic diagram for purification and separation of exosomes.
Figure 2 shows the clinical association with the overexpression of LINC00853 in the liver cancer cohort.
3 shows the results of Exosomal LINC00853 overexpression in the blood of a liver cancer patient.
4 shows the expression and AUROC results of LINC00853 in staged liver disease.
5 shows the results of AF and comparative ROC analysis in patients by mUICC stage.
6 shows the evaluation of the positive rate of AFP and LINC00853 in each disease group and the positive rate of LINC00853 according to the presence or absence of AFP in liver cancer patients.

본 발명은 긴 비번역 RNA LINC00853를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물을 제공한다.The present invention provides a biomarker composition for diagnosis of liver cancer comprising a long untranslated RNA LINC00853 as an active ingredient.

바람직하게는, 상기 긴 비번역 RNA LINC00853은 혈청 엑소좀 유래일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the long untranslated RNA LINC00853 may be derived from serum exosomes, but is not limited thereto.

본 발명의 "긴 비번역 RNA LINC00853"는 NCBI accession no. NR_047498.1 일 수 있으나, 이에 한정되는 것은 아니다."Long untranslated RNA LINC00853" of the present invention refers to NCBI accession no. NR_047498.1 may be, but is not limited thereto.

본 명세서에서 용어 "진단"은 특정 질병 또는 질환에 대한, 한 객체의 감수성(susceptibility)을 판정하는 것, 한 객체가 특정 질병 또는 질환을 현재 가지고 있는지 여부를 판정하는 것, 특정 질병 또는 질환에 걸린 한 객체의 예후(prognosis)를 판정하는 것, 또는 테라메트릭스(therametrics)(예컨대, 치료 효능에 대한 정보를 제공하기 위하여 객체의 상태를 모니터링하는 것)를 포함한다.As used herein, the term "diagnosis" refers to determining the susceptibility of an object to a specific disease or disease, determining whether an object currently has a specific disease or disease, or having a specific disease or disorder. Determining the prognosis of an object, or therametrics (eg, monitoring the condition of an object to provide information about treatment efficacy).

또한, 본 발명은 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물을 제공한다. In addition, the present invention provides a composition for diagnosing liver cancer comprising, as an active ingredient, an agent capable of measuring the expression level of long untranslated RNA LINC00853.

상세하게는 상기 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제는 상기 긴 비번역 RNA LINC00853에 특이적으로 결합하는 프라이머 또는 프로브일 수 있으나, 이에 한정되는 것은 아니다.Specifically, the agent capable of measuring the expression level of the long untranslated RNA LINC00853 may be a primer or probe that specifically binds to the long untranslated RNA LINC00853, but is not limited thereto.

바람직하게는, 상기 긴 비번역 RNA LINC00853은 혈청 엑소좀 유래일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the long untranslated RNA LINC00853 may be derived from serum exosomes, but is not limited thereto.

바람직하게는, 상기 간암은 조기 간암일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the liver cancer may be early liver cancer, but is not limited thereto.

또한, 본 발명은 상기 조성물을 포함하는 간암 진단용 키트를 제공한다.In addition, the present invention provides a liver cancer diagnostic kit comprising the composition.

본 명세서에서 용어 "프라이머"는 짧은 자유 3-말단 수산화기(free 3' hydroxyl group)를 가지는 핵산 서열로 상보적인 템플레이트(template)와 염기쌍을 형성할 수 있고 템플레이트 가닥 복사를 위한 시작 지점으로서 작용하는 짧은 핵산 서열을 말한다. 프라이머는 적절한 완충용액 및 온도에서 중합반응을 위한 시약(즉, DNA 폴리머라제 또는 역전사효소) 및 상이한 4 가지의 뉴클레오사이드 트리포스페이트의 존재하에서 DNA 합성을 개시할 수 있다. PCR 조건, 센스 및 안티센스 프라이머의 길이는 당업계에 공지된 기술에 따라 적절히 선택될 수 있다.As used herein, the term "primer" refers to a nucleic acid sequence having a short free 3'hydroxyl group, capable of forming a base pair with a complementary template, and acting as a starting point for template strand copying. Refers to the nucleic acid sequence. Primers can initiate DNA synthesis in the presence of a reagent for polymerization (ie, DNA polymerase or reverse transcriptase) and four different nucleoside triphosphates at an appropriate buffer and temperature. PCR conditions, the length of the sense and antisense primers can be appropriately selected according to techniques known in the art.

본 명세서에서 용어 "프로브"는 mRNA외 특이적으로 결합을 이룰 수 있는 짧게는 수 염기 내지 길게는 수백 염기에 해당하는 RNA 또는 DNA 등의 핵산 단편을 의미하며 라벨링되어 있어서 특정 mRNA의 존재 유무, 발현양을 확인할 수 있다. 프로브는 올리고뉴클레오타이드(oligonucleotide) 프로브, 단쇄 DNA(single strand DNA) 프로브, 이중쇄DNA(double strand DNA)프로브, RNA 프로브 등의 형태로 제작될 수 있다. 적절한 프로브의 선택 및 혼성화 조건은 당해 기술 분야에 공지된 기술에 따라 적절히 선택할 수 있다.In the present specification, the term "probe" refers to a nucleic acid fragment such as RNA or DNA corresponding to a short number of bases to a few hundred bases capable of specifically binding in addition to mRNA, and is labeled so that the presence or absence of a specific mRNA, expression You can check the amount. The probe may be manufactured in the form of an oligonucleotide probe, a single strand DNA (DNA) probe, a double strand DNA (DNA) probe, an RNA probe, or the like. Selection of an appropriate probe and conditions for hybridization can be appropriately selected according to techniques known in the art.

또한, 본 발명은 (1) 환자에서 분리된 시료로부터 긴 비번역 RNA LINC00853의 발현수준을 측정하는 단계; (2) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준을 대조군 시료와 비교하는 단계; 및 (3) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준이 대조군 시료보다 높을 경우 간암으로 판단하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법을 제공한다.In addition, the present invention (1) measuring the expression level of the long untranslated RNA LINC00853 from the sample isolated from the patient; (2) comparing the measured expression level of the long untranslated RNA LINC00853 with a control sample; And (3) it provides a method of providing information necessary for liver cancer diagnosis comprising the step of determining the liver cancer when the measured expression level of the long untranslated RNA LINC00853 is higher than that of the control sample.

바람직하게는, 상기 간암은 조기 간암일 수 있으나, 이에 한정되는 것은 아니다.Preferably, the liver cancer may be early liver cancer, but is not limited thereto.

상세하게는, 상기 긴 비번역 RNA LINC00853의 발현수준을 측정하는 방법은 RT-PCR, 경쟁적 RT-PCR(Competitive RT-PCR), 실시간 RT-PCR (Real-time RT-PCR), RNase 보호 분석법(RPA; RNase protection assay), 노던 블랏팅 (Northern blotting), DNA 칩, 웨스턴 블랏, ELISA(enzyme linked immunosorbent asay), 방사선면역분석(Radioimmunoassay; RIA), 방사면역확산법(radioimmunodiffusion), 오우크테로니(Ouchterlony) 면역 확산법, 로케이트(rocket) 면역전기영동, 조직면역염색, 면역침전 분석법(Immunoprecipitation assay), 보체고정분석법 (Complement Fixation Assay), FACS 또는 단백질 칩을 이용할 수 있지만, 이에 한정되는 것은 아니다.Specifically, the method of measuring the expression level of the long untranslated RNA LINC00853 is RT-PCR, competitive RT-PCR, real-time RT-PCR, RNase protection assay ( RPA; RNase protection assay), Northern blotting, DNA chip, Western blot, ELISA (enzyme linked immunosorbent asay), radioimmunoassay (RIA), radioimmunodiffusion, Ouchteroni ( Ouchterlony) Immune diffusion method, rocket immunoelectrophoresis, tissue immunostaining, Immunoprecipitation assay, Complement Fixation Assay, FACS or protein chip may be used, but are not limited thereto.

본 명세서에서 용어 "환자에서 분리된 시료"란 환자의 간암 진단용 바이오마커인 상기 긴 비번역 RNA LINC00853의 발현 수준에 있어서 대조군과 차이가 나는 조직, 세포, 전혈, 혈청, 혈장, 타액, 객담, 뇌척수액, 또는 뇨와 같은 시료를 포함하지만, 이에 한정되는 것은 아니다. 본 발명에서, 바람직하게는 상기 시료는 혈액일 수 있고, 보다 바람직하게는 상기 시료는 혈액 유래 혈청 엑소좀일 수 있다.In the present specification, the term "sample isolated from a patient" refers to tissues, cells, whole blood, serum, plasma, saliva, sputum, cerebrospinal fluid that differ from the control in the expression level of the long untranslated RNA LINC00853, which is a biomarker for diagnosis of liver cancer of the patient. , Or a sample such as urine, but is not limited thereto. In the present invention, preferably, the sample may be blood, and more preferably, the sample may be blood-derived serum exosomes.

이하에서는, 본 발명을 한정하지 않는 실시예에 따라 본 발명을 상세히 설명한다. 본 발명의 하기 실시예는 본 발명을 구체화하기 위한 것일 뿐 본 발명의 권리범위를 제한하거나 한정하는 것이 아님은 물론이다. 따라서, 본 발명의 상세한 설명 및 실시예로부터 본 발명이 속하는 기술분야의 전문가가 용이하게 유추할 수 있는 것은 본 발명의 권리범위에 속하는 것으로 해석된다. Hereinafter, the present invention will be described in detail according to examples that do not limit the present invention. It goes without saying that the following examples of the present invention are intended to embodi the present invention and do not limit or limit the scope of the present invention. Therefore, what can be easily inferred by experts in the technical field to which the present invention pertains from the detailed description and examples of the present invention is interpreted as belonging to the scope of the present invention.

<실험예><Experimental Example>

하기의 실험예들은 본 발명에 따른 각각의 실시예에 공통적으로 적용되는 실험예를 제공하기 위한 것이다.The following experimental examples are intended to provide experimental examples commonly applied to each of the examples according to the present invention.

1. One. 엑소좀Exosomes 분리 및 검증 Separation and verification

(1) 간암 세포, 정상 간세포, 간 성상세포 세포 배양액에서 각각의 엑소좀을 정제/분리 (1) Purifying/separating each exosome from liver cancer cells, normal hepatocytes, and hepatic stellate cell culture media

초원심분리를 이용한 엑소좀의 분리: 각각의 간암 세포주 배양액을 300g에서 10분간 원심분리하여 세포 찌거기(cell debris)를 제거하고, 3000g에서 20분간 원심분리하여 세포사멸체(apoptotic body)를 제거하였다. 100,000g에서 70분간 초원심분리하여, 엑소좀 분획(fraction)을 분리하였다. 0.2 μm pore 필터를 이용하여 ultrafiltration을 통해 D-PBS 배지에 부유시킨 엑소좀을 250 μl 로 농축시켰다.Separation of exosomes using ultracentrifugation: Each liver cancer cell line culture was centrifuged at 300 g for 10 minutes to remove cell debris, and then centrifuged at 3000 g for 20 minutes to remove apoptotic bodies. . By ultracentrifugation at 100,000 g for 70 minutes, an exosome fraction was separated. The exosomes suspended in D-PBS medium were concentrated to 250 μl through ultrafiltration using a 0.2 μm pore filter.

Optiprep density gradient centrifugation을 이용한 엑소좀의 정제: 상기에서 획득한 엑소좀을 더욱 정제하기 위해 sucrose gradient를 시행하였다. sucrose buffer와 60% Optiprep gradient media (Sigma-Aldrich)를 희석해, 40%, 20%, 10%, 5% 용액을 제조하고 원심분리 튜브에 차례로 layering하고, 상기에서 초원심분리로 추출한 엑소좀을 로딩하였다. 100,000g에서 18시간 초원심분리하고 40%와 20% 사이에 위치한 엑소좀을 수집하였다(도 1).Purification of exosomes using Optiprep density gradient centrifugation: To further purify the exosomes obtained above, sucrose gradient was performed. By diluting sucrose buffer and 60% Optiprep gradient media (Sigma-Aldrich), 40%, 20%, 10%, 5% solutions were prepared, layered in order in a centrifuge tube, and the exosomes extracted by ultracentrifugation above were Loaded. Ultracentrifugation was performed at 100,000 g for 18 hours, and exosomes located between 40% and 20% were collected (FIG. 1).

(2) 환자 혈청에서의 엑소좀 분리 및 RNA 추출(2) Isolation of exosomes and extraction of RNA from patient serum

정상 및 간암 환자 혈청은 300ul를 사용하고 Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1))로 추출하였다. Serum of normal and liver cancer patients was extracted using 300ul of Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1)).

환자 혈청 300ul에 ExoQuick™ 72ul를 넣고 혼합(Vortex) 해준 후, 4℃에 하루 정도 보관한 후, 환자 혈청 300ul에 ExoQuick™ 넣어둔 샘플을 13,000rpm, 4℃, 2분 동안 원심분리하였다.72ul of ExoQuick™ was added to 300ul of patient serum, mixed (Vortex), and stored at 4°C for about a day, and then a sample of ExoQuick™ put in 300ul of patient serum was centrifuged at 13,000rpm at 4°C for 2 minutes.

생성된 펠렛(Pellet)만 남기고 상층액은 모두 제거 후 PBS(1×) (Hyclone™) 100ul로 펠렛을 녹인 후 Lysis buffer 300ul 와 100% EtOH 200ul를 첨가 후 혼합(Vortex)를 10초간 진행하였다.After removing all the supernatant, leaving only the generated pellet, the pellet was dissolved in 100 ul of PBS (1×) (Hyclone™), and 300 ul of Lysis buffer and 200 ul of 100% EtOH were added, followed by mixing (Vortex) for 10 seconds.

Spin Column과 Collection Tube를 준비하여 샘플 전량을(600ul)을 Column에 옮겨 준 후 13,000rpm, 4℃, 1분간 원심분리하여, Collection Tube에 내려온 용액을 제거 후 Wash Buffer 400ul를 넣어 주고, 13,000rpm, 4℃, 1분간 원심분리 및 Collection Tube에 내려온 용액을 제거 후 반복 작업 후 13,000rpm, 4℃, 2분간 원심분리 진행 후 최종 건조시켰다.Prepare Spin Column and Collection Tube, transfer the entire sample (600ul) to the column, centrifuge at 13,000rpm, 4℃ for 1 minute, remove the solution that has come down to the Collection Tube, and add 400ul Wash Buffer to the column. After centrifugation at 4° C. for 1 minute and removal of the solution that came down to the Collection Tube, the solution was repeated, centrifuged at 13,000 rpm, 4° C. for 2 minutes, and finally dried.

Elution buffer 30ul를 첨가하여 2,000rpm, 4℃, 2분간 원심분리 후, 13,000rpm, 4℃, 1분간 최종 원심분리하였다. 수득한 용액으로 Nano Drop으로 농도 측정하였다.After adding 30ul of elution buffer, centrifugation was performed at 2,000rpm, 4℃, for 2 minutes, followed by final centrifugation at 13,000rpm, 4℃, for 1 minute. The concentration was measured by Nano Drop with the obtained solution.

(3) 환자 혈청에서의 RNA 추출(3) RNA extraction from patient serum

정상 및 간암 환자 혈청은 300ul를 사용하고 TRIzol™ reagent(Invitrogen)로 RNA를 추출하였다.Serum of normal and liver cancer patients was 300ul, and RNA was extracted with TRIzol™ reagent (Invitrogen).

2. 간질환 병기별 whole 2. Liver disease by stage whole transcriptometranscriptome 데이터로부터 간암 특이적 Liver cancer specific from data lncRNAlncRNA 마커 스크리닝 Marker screening

정상 대조군에 비하여 간염 및 간경화에서는 유의하게 발현이 차이 나지 않으나 조기 간암 및 진행성 간암에서만 특이적으로 발현이 증가되는 유전자들을 선별하고자 하였으며, TCGA_LIHC dataset에서 lncRNA만을 선별하였을 때 총 14269개를 선정한 후 간암 환자의 정상주변조직 50개, 간암조직 371개 샘플에서 두 그룹간 통계적으로 유의한 (P<0.05, 1.5 fold changes) 3674 lncRNA를 추려냈다. 이를 heatmap과 volcano plot을 통하여 보다 세밀한 분석을 시행하여 7개의 간암 특이적 lncRNA를 동정하였다.Compared to the normal control group, the expression was not significantly different in hepatitis and cirrhosis, but we tried to select genes whose expression is specifically increased only in early and advanced liver cancer.When only lncRNA was selected in the TCGA_LIHC dataset, a total of 14269 were selected and then liver cancer patients. Of 50 normal peripheral tissues and 371 liver cancer tissues, 3674 lncRNAs were selected that were statistically significant (P<0.05, 1.5 fold changes) between the two groups. Through a heatmap and volcano plot, a more detailed analysis was performed to identify 7 liver cancer-specific lncRNAs.

3. 공공 3. Public 오믹스Omix 데이터를 이용하여 검증 진행한 Verified using data 엑소좀Exosomes LINC00853LINC00853 후보 선정 Candidate selection

간암 엑소좀에서 과발현되는 lncRNA의 간암 시료 발현량 및 예후와의 연관성을 TCGA data 세트에서 분석하여, 간암 시료에서 유의하게 과발현되고 예후와의 연관성을 보이는 LINC00853를 선정하여 실제 간질환 환자 코호트에서 검증 진행하였다.The association between the expression level and prognosis of the liver cancer sample of lncRNA overexpressed in liver cancer exosomes was analyzed in the TCGA data set, and LINC00853, which was significantly overexpressed in the liver cancer sample and showed a correlation with the prognosis, was selected and verified in an actual liver disease patient cohort. I did.

4. 검증용 간질환 4. Liver disease for verification 코호트Cohort 혈액 및 임상정보 수집 Collection of blood and clinical information

아주대학교병원에서 IRB 심사를 통과 후, 인체자원은행을 통해 간질환 코호트 183명 (정상 29명, 만성 간염 28명, 간경변 35명, 간암 91명)의 혈청 및 임상정보를 분양받아 연구를 진행하였다.After passing the IRB screening at Ajou University Hospital, the study was conducted by pre-sale of serum and clinical information of 183 liver disease cohorts (29 normal, 28 chronic hepatitis, 35 cirrhosis, 91 liver cancer) through the Human Resource Bank. .

5. 5. qPCRqPCR 분석을 통하여 간질환 Liver disease through analysis 코호트Cohort 환자 혈청 및 혈청 Patient Serum and Serum 엑소좀에서In exosomes LINC00853의 발현량 측정 LINC00853 expression level measurement

LINC00853 발현을 측정하기 위하여 환자 혈청은 300ul 사용하였고, TRIzol reagent(Cat #15596018)(Ivitrogen), Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1))(SBI, System Biosciences) 사용하였고, PrimeScript™ RT Master Mix(Perfect Real Time)(Cat #RR036A)(TaKaRa), miScript RT Ⅱ kit (Cat #218161)(QIAGEN)를 사용하여 cDNA 합성을 진행하였다.To measure LINC00853 expression, 300ul of patient serum was used, TRIzol reagent (Cat #15596018) (Ivitrogen), Exosome RNA isolation kit (SeraMir™ Exosome RNA Amplification (Cat #RA806A-1)) (SBI, System Biosciences) was used. , PrimeScript™ RT Master Mix (Perfect Real Time) (Cat #RR036A) (TaKaRa), miScript RT II kit (Cat #218161) (QIAGEN) was used to synthesize cDNA.

혈청 RNA와 RNA Free Water (RFW)를 합하여 8ul에 맞추고, 5X PrimeScript RT Master Mix를 2ul 넣어서 총 10ul로 cDNA 합성을 진행하였다. Serum RNA and RNA Free Water (RFW) were combined and adjusted to 8ul, and 2ul of 5X PrimeScript RT Master Mix was added to synthesize a total of 10ul.

혈청 엑소좀 RNA와 RNA Free Water (RFW)를 합하여 12ul에 맞추고, miScript RT Ⅱ Buffer를 8ul (5× miScript Hiflex buffer는 4ul, 10× miScript Nucleics Mix는 2ul, miScript Reverse TranScriptase Mix는 2ul) 넣어서, 총 20ul로 cDNA 합성을 진행하였다. Add serum exosome RNA and RNA Free Water (RFW) to 12ul, add 8ul of miScript RT Ⅱ Buffer (4ul for 5× miScript Hiflex buffer, 2ul for 10× miScript Nucleics Mix, 2ul for miScript Reverse TranScriptase Mix). CDNA was synthesized with 20ul.

cDNA 조건은 아래와 같이 설정하였다.The cDNA conditions were set as follows.

(PrimeScript RT master mix 사용시)(When using PrimeScript RT master mix)

A. Stage 1 : 37℃, 15분A. Stage 1: 37℃, 15 minutes

B. Stage 2 : 85℃, 5초 후 10℃, -ingB. Stage 2: 85℃, 10℃ after 5 seconds, -ing

(miScript RT Ⅱ kit 사용시)(When using miScript RT Ⅱ kit)

A. Stage 1 : 37℃, 60분A. Stage 1: 37℃, 60 minutes

B. Stage 2 : 95℃, 5분 후 10℃, -ingB. Stage 2: 95℃, 10℃ after 5 minutes, -ing

합성된 cDNA는 1/20 희석하여 사용하였다.The synthesized cDNA was diluted 1/20 and used.

GeneGene Accession No.Accession No. Forward sequenceForward sequence Reverse sequenceReverse sequence LINC00853LINC00853 NR_047498.1NR_047498.1 5'-AAAGGCTAGGCGATCCCACA-3'5'-AAAGGCTAGGCGATCCCACA-3' 5'-ACTCCCTAGCTTGGCTCTCCT-3'5'-ACTCCCTAGCTTGGCTCTCCT-3' HMBSHMBS NM_001024382.2NM_001024382.2 5'-GGAGGGCAGAAGGAAGAAAACAG-3'5'-GGAGGGCAGAAGGAAGAAAACAG-3' 5'-CACTGTCCGTCTGTATGCGAG-3'5'-CACTGTCCGTCTGTATGCGAG-3'

상기 표 1의 서열을 가진 프라이머를 사용하여 PCR을 수행하였다. 이때 필요한 프라이머(primer)는 M.biotech (Hanam, Korea)에서 구입하여 사용하였다. qPCR MasterMix (2X, High ROX) (Gendepot, Cat #Q5602)는 5ul 사용하여 총 10ul로 qRT-PCR 진행하였다.PCR was performed using the primers having the sequence of Table 1. At this time, the necessary primer was purchased and used from M.biotech (Hanam, Korea). qPCR MasterMix (2X, High ROX) (Gendepot, Cat #Q5602) was used for qRT-PCR in a total of 10ul using 5ul.

qRT-PCR 조건은 아래와 같이 설정하였다.qRT-PCR conditions were set as follows.

A. Stage 1 : 95℃에서 2분A. Stage 1: 2 minutes at 95℃

B. Stage 2 : 95℃에서 15초, 60℃에서 34초, 72℃에서 30초B. Stage 2: 95℃ for 15 seconds, 60℃ for 34 seconds, 72℃ for 30 seconds

C. Stage 2를 45 cycle 반복C. Repeat Stage 2 45 cycles

6. 6. LINC00853LINC00853 결과의 통계 분석 Statistical analysis of the results

Microsoft Office Excel 프로그램을 사용하여 혈청의 상대적인 농도를 계산한 후, 통계 분석은 MedCalc statistical software 및 SPSS v22 분석 프로그램을 이용하여 분석 진행하였다.After calculating the relative concentration of serum using the Microsoft Office Excel program, statistical analysis was performed using MedCalc statistical software and SPSS v22 analysis program.

<< 실시예Example 1> 조기 간암 판별 혈청 1> Early liver cancer detection serum 엑소좀Exosomes LINC00853선별을LINC00853 to be selected 위한 통합 유전체 분석 For integrated genome analysis

간암이 발생함에 있어 드라이버 역할을 하는 긴 비번역 RNA(lncRNA)를 동정하기 위하여 먼저 TCGA_LIHC dataset에서 lncRNA만을 선별하였을 때, 총 14269개를 선정한 후 (Genecode v22, biotype 기준) 간암 환자의 정상주변조직 50개, 간암조직 371개 샘플에서 두 그룹간 통계적으로 유의한 (P<0.05, 1.5 fold changes) 3674 lncRNA를 추려냈다.To identify long untranslated RNA (lncRNA) that plays a role in liver cancer incidence, when only lncRNA was first selected from the TCGA_LIHC dataset, a total of 14269 were selected (Genecode v22, biotype), and then normal peripheral tissues of liver cancer patients 50 Statistically significant (P<0.05, 1.5 fold changes) between the two groups from 371 samples of dog and liver cancer tissues, 3674 lncRNAs were selected.

3674개 lncRNA를 heatmap으로 나타냈을 때, 이 중 간암에서 3140개의 유전자가 과발현되어 있고, 534개 유전자가 저발현되어 있는 것으로 나타났다. 상대적으로 많은 lncRNA가 과발현되어 있는 것을 알 수 있었다.When 3674 lncRNAs were expressed as a heatmap, it was found that 3140 genes were overexpressed in liver cancer and 534 genes were underexpressed. It was found that relatively many lncRNAs were overexpressed.

volcano plot을 통하여, 보다 세밀한 분석을 시행하였을 때, 7개의 간암 드라이버 유전자를 동정할 수 있었다. 이 중 LINC00853만이 지금까지 연구 결과에서는 알려지지 않은 신규 간암 특이 lncRNA로 선정되었다.Through the volcano plot, when more detailed analysis was performed, 7 liver cancer driver genes could be identified. Of these, only LINC00853 was selected as a novel liver cancer-specific lncRNA unknown in the research results to date.

LINC00853의 발현을 검증하기 위해, TCGA_LIHC를 포함한 3개 데이터 세트 (GSE94660, GSE124535)에서 확인하였을 때 3개의 데이터에서 모두 간암에서 통계적으로 유의하게 과발현되어 있는 것을 확인하였다.In order to verify the expression of LINC00853, it was confirmed that the three data sets (GSE94660, GSE124535) including TCGA_LIHC were statistically significant overexpression in all three data in liver cancer.

간암 병기별 시퀀싱 데이터인 GSE114564에서 병기별 LINC00853의 발현 정도를 확인한 결과, 간암이 진행될수록 발현이 점점 증가하는 경향을 보이는 것을 확인하였다.As a result of checking the expression level of LINC00853 by stage in GSE114564, which is the sequencing data for each stage of liver cancer, it was confirmed that the expression gradually increased as the liver cancer progressed.

TCGA_LIHC dataset에서 LINC00853의 발현에 따른 생존 분석을 시행하였을 때, 전체생존률과 무병생존률에서 LINC00853의 발현이 높은 환자군에서 예후가 좋지 않은 것으로 나타났다(각각 Logrank P=0.002, P=0.006)(도 2).When the survival analysis according to the expression of LINC00853 was performed on the TCGA_LIHC dataset, the prognosis was poor in the patient group with high expression of LINC00853 in the overall survival rate and disease-free survival rate (Logrank P=0.002, P=0.006, respectively) (Fig. 2).

<< 실시예Example 2> 2> LINC00853의Of LINC00853 혈청 serum 엑소좀Exosomes 간암 진단 Liver cancer diagnosis 마커로써의As a marker 특이성( Specificity( 진단력Diagnostic power ) 평가) evaluation

비침습적 진단 마커로 LINC00853을 평가하기 위해 10명의 정상환자와 10명의 간암환자의 혈청에서 qRT-PCR을 이용하여 발현을 측정하였을 때, 정상환자와 간암환자의 발현 차이를 볼 수 없었다.In order to evaluate LINC00853 as a non-invasive diagnostic marker, when the expression was measured using qRT-PCR in the serum of 10 normal patients and 10 liver cancer patients, there was no difference in expression between normal patients and liver cancer patients.

여러 세포에서 생산되는 작은 세포외소포체(small extracellular vesicles)의 일종인 엑소좀(exosome)은 암을 비롯한 여러가지 질환에 대한 바이오마커로써, 기초 연구 및 제약 분야에서 중요한 연구 대상으로 이미 여러 연구결과에서 보고되어 있으므로 LINC00853의 발현을 혈청 엑소좀에서 분리한 RNA에서 측정해보기로 하였다.Exosome, a type of small extracellular vesicles produced by various cells, is a biomarker for various diseases including cancer, and has been reported in various research results as an important research subject in basic research and pharmaceutical fields. Therefore, it was decided to measure the expression of LINC00853 in RNA isolated from serum exosomes.

혈청 엑소좀이 잘 분리되었음을 확인하기 위하여, 엑소좀 마커인 CD63, CD81에서 western blot을 통해 단백질을 확인하였을 때, 혈청 엑소좀(serum exosome)에서 CD63과 CD81의 발현이 나타난 것을 확인할 수 있었고, ER 마커인 Grp78에서는 세포 용해물(cell lysate)에서만 감지되는 것을 확인하였다.In order to confirm that the serum exosomes were well separated, when proteins were confirmed through western blot in the exosome markers CD63 and CD81, it was confirmed that the expression of CD63 and CD81 appeared in the serum exosome, and ER It was confirmed that the marker Grp78 was detected only in cell lysate.

PKH26 염색된 간암 환자 혈액에서 추출한 엑소좀의 사진을 관찰할 수 있었었다.Pictures of exosomes extracted from the blood of PKH26-stained liver cancer patients could be observed.

추출한 혈청 엑소좀 RNA에서 LINC00853의 발현을 확인한 결과, 정상군은 거의 발현되지 않은 반면 간암 환자샘플 모두 과발현됨을 확인할 수 있었다(도 3).As a result of confirming the expression of LINC00853 in the extracted serum exosome RNA, it was confirmed that the normal group was almost not expressed, whereas all of the liver cancer patient samples were overexpressed (FIG. 3).

<< 실시예Example 3> 3> LINC00853의Of LINC00853 간질환 Liver disease 코호트에서의In the cohort 진단력Diagnostic power 평가 evaluation

아주대병원 소화기내과 내원 환자에서 LINC00853의 간암 진단력을 평가하기 위해, 정상간(n=29), 만성간염(n=28), 간경화(n=35), mUICC I (n=32), mUICC II(n=14), mUICC III/IV(n=45) 환자 혈청 엑소좀에서 Quantitative real-time PCR로 LINC00853 발현 확인하였다. 비간암 (NL, CH, LC)에 비해 간암환자 혈청 엑소좀에서 LINC00853이 통계적으로 유의하게 발현이 증가됨을 확인하였다 (Welch's t-test, compare to normal liver; *P<0.05, **P<0.01, ***P<0.001, compare to CH; #P<0.05, ##P<0.01, ###P<0.001, compare to LC; §P<0.05, §§P<0.01, §§§P<0.001). To evaluate the diagnosis of liver cancer of LINC00853 in patients who visited the Department of Gastroenterology at Ajou University Hospital, normal liver (n=29), chronic hepatitis (n=28), cirrhosis (n=35), mUICC I (n=32), mUICC II (n=14), mUICC III/IV (n=45) LINC00853 expression was confirmed in patient serum exosomes by quantitative real-time PCR. It was confirmed that the expression of LINC00853 was statistically significantly increased in serum exosomes of liver cancer patients compared to non-liver cancer (NL, CH, LC) (Welch's t-test, compare to normal liver; *P<0.05, **P<0.01 , ***P<0.001, compare to CH; #P<0.05, ##P<0.01, ###P<0.001, compare to LC; §P<0.05, §§P<0.01, §§§P< 0.001).

간암 진단에 있어 ROC 분석 결과, 혈청 엑소좀 LINC00853은 간암 진단의 AUC가 0.934 (95% CI:0.887-0.966)로 매우 높게 평가되었다. 또한 cut-off value는 14-fold로 나타났다(도 4).As a result of ROC analysis in diagnosing liver cancer, serum exosomes LINC00853 had a very high AUC of 0.934 (95% CI: 0.887-0.966) for liver cancer diagnosis. In addition, the cut-off value was found to be 14-fold (Fig. 4).

<< 실시예Example 4> 4> 엑소좀Exosomes LINC00853의Of LINC00853 조기 간암 Early liver cancer 마커로서의As a marker 검증 결과 Verification result

조기 간암 판별 여부를 판단하기 위하여 mUICC 병기를 나누어 AUC를 측정하였다.In order to determine whether to detect early liver cancer, the AUC was measured by dividing the mUICC stage.

기존 간암 혈청 마커인 AFP와 비교하여 분석하여 통계적으로 유의한 우월성을 확인하고자 하였다.It was compared with the existing liver cancer serum marker, AFP, to confirm statistically significant superiority.

도 5에 나타낸 바와 같이, 전체 간암 코호트에서의 간암 진단에 있어서 AFP는 AUC가 0.713으로 나타났고, LINC00853은 AUC 0.935, 정상을 제외한 간암 고위험군인 CH와 LC에서 비교하였을 때, AFP의 AUC는 0.601로, LINC00853는 0.908로 상당한 차이를 보였다(P<0.0001).As shown in FIG. 5, in the diagnosis of liver cancer in the entire liver cancer cohort, AFP showed an AUC of 0.713, LINC00853 was AUC of 0.935, and when compared in CH and LC, the high-risk groups of liver cancer excluding normal, the AFP of AUC was 0.601. , LINC00853 showed a significant difference of 0.908 (P<0.0001).

mUICC I과 II를 포함한 조기 간암 코호트에서의 간암 진단에 있어서 AFP는 AUC가 0.604로 나타났고, LINC00853은 AUC 0.965, 정상을 제외한 간암 고위험군인 CH와 LC에서 비교하였을 때, AFP의 AUC는 0.541로, LINC00853는 0.950로 역시 상당한 차이를 보였다(P<0.0001).In the diagnosis of liver cancer in the early liver cancer cohort including mUICC I and II, AFP had an AUC of 0.604, LINC00853 had an AUC of 0.965, and when compared in CH and LC, the high-risk groups of liver cancer excluding normal, AFP had an AUC of 0.541. LINC00853 also showed a significant difference at 0.950 (P<0.0001).

종양 크기 2cm 이하의 mUICC I 병기의 조기 간암 코호트에서의 간암 진단에 있어서 AFP는 AUC가 0.548으로 나타났고, LINC00853은 AUC 0.969, 정상을 제외한 간암 고위험군인 CH와 LC에서 비교하였을 때, AFP의 AUC는 0.604로, LINC00853는 0.956로 유의한 차이를 보였다(P<0.0001).In the diagnosis of liver cancer in the early liver cancer cohort of mUICC stage I with a tumor size of 2 cm or less, AFP showed an AUC of 0.548, LINC00853 was AUC 0.969, and when compared in CH and LC, high-risk liver cancer groups excluding normal, the AUC of AFP was 0.604 and LINC00853 showed a significant difference as 0.956 (P<0.0001).

도 6에 나타낸 바와 같이, 정상간에서의 양성 비율을 보았을 때, AFP는 0%, LINC00853은 0%로 동일하게 측정되었다. 간염군에서는 AFP는 30%, LINC00853은 11%로 측정되었다. 간경화군에서는 AFP는 50%, LINC00853은 19%로 측정되었다. mUICC I 병기 간암 환자군에서는 AFP는 9%, LINC00853은 94%로 간암 측정 마커인 AFP보다 현저히 높은 양성 비율로 측정되었다. mUICC II에서는 AFP는 29%, LINC00853은 86%로 나타났다. mUICC III/IV 간암환자에서 AFP가 60%, LINC00853은 73%로 나타났다. 전반적으로 비간암군에서는 AFP 보다 LINC00853의 양성 비율이 현저히 낮았고, 특히 조기 간암 군에서 LINC00853의 양성 비율은 AFP보다 매우 높은 것으로 나타났다.As shown in Fig. 6, when looking at the positive rate in the normal liver, AFP was measured equal to 0% and LINC00853 was 0%. In the hepatitis group, AFP was measured at 30% and LINC00853 was measured at 11%. In the cirrhosis group, AFP was 50% and LINC00853 was 19%. In the mUICC stage I liver cancer patient group, AFP was 9% and LINC00853 was 94%, which was significantly higher than that of AFP, a marker for measuring liver cancer. In mUICC II, AFP was 29% and LINC00853 was 86%. In mUICC III/IV liver cancer patients, AFP was 60% and LINC00853 was 73%. Overall, the positive rate of LINC00853 was significantly lower than that of AFP in the non-liver cancer group, and the positive rate of LINC00853 was significantly higher than that of AFP in the early liver cancer group.

전체 간암 환자군에서 AFP의 양성 유무에 따라 LINC00853의 양성비율을 비교해 보았을 때, AFP가 음성인 간암 환자에서 LINC00853는 86% 양성으로 나타났다.When comparing the positive rate of LINC00853 according to the presence or absence of AFP in all liver cancer patients, LINC00853 was found to be 86% positive in liver cancer patients with negative AFP.

UICC I/II 병기 간암 환자군에서 AFP의 양성 유무에 따라 LINC00853의 양성비율을 비교해 보았을 때, AFP가 음성인 간암 환자에서 LINC00853는 92% 양성으로 매우 높은 진단력을 보였다.When comparing the positive rate of LINC00853 according to the presence or absence of AFP in the UICC stage I/II liver cancer patient group, LINC00853 showed a very high diagnostic power as 92% positive in liver cancer patients with a negative AFP.

mUICC I 병기 간암 환자군에서 AFP의 양성 유무에 따라 LINC00853의 양성비율을 비교해 보았을 때, AFP가 음성인 간암 환자에서 LINC00853는 97% 양성으로 조기 간암 진단력이 매우 낮은 AFP를 극복할 수 있는 마커로의 가능성을 보였다.When comparing the positive rate of LINC00853 according to the presence or absence of AFP in the mUICC stage I liver cancer patient group, LINC00853 was 97% positive in liver cancer patients with a negative AFP. Showed possibility.

결론적으로, 본 발명은 간암 엑소좀에서 과발현된 LINC00853를 이용한 간암 진단력에 관한 것으로 소량의 혈액만으로도 상당히 우수한 민감도와 특이도를 나타내어 조기 간암의 정확한 진단이 가능한 바, 진단의 정확성, 간편성, 그리고 경제성에 효과가 있다고 할 수 있다. In conclusion, the present invention relates to the diagnostic ability of liver cancer using LINC00853 overexpressed in liver cancer exosomes, and exhibits quite excellent sensitivity and specificity with only a small amount of blood, enabling accurate diagnosis of early liver cancer, accuracy, simplicity, and economy of diagnosis. It can be said that it is effective.

본 발명은 간암 세포 엑소좀에서 과발현되는 lncRNA를 발굴하고, 이를 1차로 공공 오믹스 데이터에서 검증하여 LINC00853을 선별하였으며, 선별된 LINC00853의 임상적 유효성을 독립적인 간질환 코호트에서 검증하여 우수한 진단적 정확도를 확인하였다. The present invention discovered lncRNA overexpressed in hepatic cancer cell exosomes, and firstly verified it in public ohmic data to select LINC00853, and the clinical effectiveness of the selected LINC00853 was verified in an independent liver disease cohort, resulting in excellent diagnostic accuracy. Was confirmed.

초음파를 이용한 조기 간암의 발견율이 60-80%로 기대에 미치지 못하고, 혈청 바이오마커로 알려진 AFP 또한 조기 간암에서의 역할이 미미한 상황에서, 본 발명은 소량의 혈액을 이용하여 놀라운 간암 진단 정확도를 보이고 있어, 향후 간암 고위험군 선별 검사에 있어 본 발명이 혁신적 역할을 할 것으로 예상된다.The detection rate of early liver cancer using ultrasound is 60-80%, which is less than expected, and AFP, known as a serum biomarker, also plays a minor role in early liver cancer, and the present invention shows remarkable liver cancer diagnosis accuracy using a small amount of blood. Therefore, the present invention is expected to play an innovative role in screening for high-risk liver cancer in the future.

Claims (11)

긴 비번역 RNA LINC00853를 유효성분으로 포함하는 간암 진단용 바이오마커 조성물.A biomarker composition for diagnosing liver cancer comprising a long untranslated RNA LINC00853 as an active ingredient. 제1항에 있어서, 상기 긴 비번역 RNA LINC00853는 혈청 엑소좀 유래인 것을 특징으로 하는 간암 진단용 바이오마커 조성물.The biomarker composition for diagnosing liver cancer according to claim 1, wherein the long untranslated RNA LINC00853 is derived from serum exosomes. ◈청구항 3은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 3 was abandoned upon payment of the set registration fee.◈ 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제를 유효성분으로 포함하는 간암 진단용 조성물.A composition for diagnosing liver cancer comprising an agent capable of measuring the expression level of long untranslated RNA LINC00853 as an active ingredient. ◈청구항 4은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 4 was abandoned upon payment of the set registration fee. 제3항에 있어서, 상기 긴 비번역 RNA LINC00853의 발현수준을 측정할 수 있는 제제는 상기 긴 비번역 RNA LINC00853에 특이적으로 결합하는 프라이머 또는 프로브인 것을 특징으로 하는 간암 진단용 조성물.The composition for diagnosing liver cancer according to claim 3, wherein the agent capable of measuring the expression level of the long untranslated RNA LINC00853 is a primer or probe that specifically binds to the long untranslated RNA LINC00853. ◈청구항 5은(는) 설정등록료 납부시 포기되었습니다.◈◈Claim 5 was abandoned upon payment of the set registration fee.◈ 제3항에 있어서, 상기 긴 비번역 RNA LINC00853은 혈청 엑소좀 유래인 것을 특징으로 하는 간암 진단용 조성물.The composition for diagnosing liver cancer according to claim 3, wherein the long untranslated RNA LINC00853 is derived from serum exosomes. ◈청구항 6은(는) 설정등록료 납부시 포기되었습니다.◈◈Claim 6 was abandoned upon payment of the set registration fee.◈ 제3항에 있어서, 상기 간암은 조기 간암인 것을 특징으로 하는 간암 진단용 조성물.The composition for diagnosing liver cancer according to claim 3, wherein the liver cancer is early liver cancer. ◈청구항 7은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 7 was abandoned upon payment of the set registration fee. 제3항 내지 제6항 중 어느 한 항의 조성물을 포함하는 간암 진단용 키트.A kit for diagnosing liver cancer comprising the composition of any one of claims 3 to 6. ◈청구항 8은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 8 was abandoned upon payment of the set registration fee. (1) 환자에서 분리된 시료로부터 긴 비번역 RNA LINC00853의 발현수준을 측정하는 단계;
(2) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준을 대조군 시료와 비교하는 단계; 및
(3) 상기 측정된 긴 비번역 RNA LINC00853의 발현수준이 대조군 시료보다 높을 경우 간암으로 판단하는 단계를 포함하는 간암 진단에 필요한 정보를 제공하는 방법.
(1) measuring the expression level of long untranslated RNA LINC00853 from the sample isolated from the patient;
(2) comparing the measured expression level of the long untranslated RNA LINC00853 with a control sample; And
(3) A method of providing information necessary for diagnosis of liver cancer, comprising determining that the measured expression level of the long untranslated RNA LINC00853 is higher than that of a control sample.
◈청구항 9은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 9 was abandoned upon payment of the set registration fee.◈ 제8항에 있어서, 상기 시료는 혈액인 것을 특징으로 하는 간암 진단에 필요한 정보를 제공하는 방법.The method of claim 8, wherein the sample is blood. ◈청구항 10은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 10 was abandoned upon payment of the set registration fee. 제9항에 있어서, 상기 시료는 혈액 유래 혈청 엑소좀인 것을 특징으로 하는 간암 진단에 필요한 정보를 제공하는 방법.The method of claim 9, wherein the sample is a blood-derived serum exosome. ◈청구항 11은(는) 설정등록료 납부시 포기되었습니다.◈◈ Claim 11 was abandoned upon payment of the set registration fee. 제8항에 있어서, 상기 간암은 조기 간암인 것을 특징으로 하는 간암 진단에 필요한 정보를 제공하는 방법.
The method of claim 8, wherein the liver cancer is early liver cancer.
KR1020200002494A 2020-01-08 2020-01-08 Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis KR102254686B1 (en)

Priority Applications (4)

Application Number Priority Date Filing Date Title
KR1020200002494A KR102254686B1 (en) 2020-01-08 2020-01-08 Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis
KR1020210059286A KR102258096B1 (en) 2020-01-08 2021-05-07 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059285A KR102258095B1 (en) 2020-01-08 2021-05-07 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059287A KR102258097B1 (en) 2020-01-08 2021-05-07 Method for diagnosing liver cancer by measuring expression level of serum exosomal long non-coding RNA

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
KR1020200002494A KR102254686B1 (en) 2020-01-08 2020-01-08 Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis

Related Child Applications (3)

Application Number Title Priority Date Filing Date
KR1020210059285A Division KR102258095B1 (en) 2020-01-08 2021-05-07 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059286A Division KR102258096B1 (en) 2020-01-08 2021-05-07 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059287A Division KR102258097B1 (en) 2020-01-08 2021-05-07 Method for diagnosing liver cancer by measuring expression level of serum exosomal long non-coding RNA

Publications (1)

Publication Number Publication Date
KR102254686B1 true KR102254686B1 (en) 2021-05-21

Family

ID=76140178

Family Applications (4)

Application Number Title Priority Date Filing Date
KR1020200002494A KR102254686B1 (en) 2020-01-08 2020-01-08 Circulating serum exosomal lncRNA marker composition for diagnosing early liver cancer for noninvasive in vitro diagnosis
KR1020210059285A KR102258095B1 (en) 2020-01-08 2021-05-07 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059286A KR102258096B1 (en) 2020-01-08 2021-05-07 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059287A KR102258097B1 (en) 2020-01-08 2021-05-07 Method for diagnosing liver cancer by measuring expression level of serum exosomal long non-coding RNA

Family Applications After (3)

Application Number Title Priority Date Filing Date
KR1020210059285A KR102258095B1 (en) 2020-01-08 2021-05-07 Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059286A KR102258096B1 (en) 2020-01-08 2021-05-07 Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
KR1020210059287A KR102258097B1 (en) 2020-01-08 2021-05-07 Method for diagnosing liver cancer by measuring expression level of serum exosomal long non-coding RNA

Country Status (1)

Country Link
KR (4) KR102254686B1 (en)

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN115094140A (en) * 2022-06-29 2022-09-23 山东第一医科大学第一附属医院(山东省千佛山医院) Application of LncRNA AC026412.3 as liver cancer diagnosis and/or prognosis marker

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106967820A (en) 2017-05-05 2017-07-21 南京盖斯夫医药科技有限公司 LncRNA gene markers and kit for early diagnosing primary carcinoma of liver
US20190219578A1 (en) * 2018-01-18 2019-07-18 Nanosomix, Inc. Dectection of exosomes and exosomal biomarkers for the diagnosis and prognosis of diseases and disorders

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN106967820A (en) 2017-05-05 2017-07-21 南京盖斯夫医药科技有限公司 LncRNA gene markers and kit for early diagnosing primary carcinoma of liver
US20190219578A1 (en) * 2018-01-18 2019-07-18 Nanosomix, Inc. Dectection of exosomes and exosomal biomarkers for the diagnosis and prognosis of diseases and disorders
WO2019144056A1 (en) * 2018-01-18 2019-07-25 Nanosomix, Inc. Dectection of exosomes and exosomal biomarkers for the diagnosis and prognosis of diseases and disorders

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
Mol Ther Nucleic Acids. 18: 351-362 (2019 Dec 6) *

Cited By (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN115094140A (en) * 2022-06-29 2022-09-23 山东第一医科大学第一附属医院(山东省千佛山医院) Application of LncRNA AC026412.3 as liver cancer diagnosis and/or prognosis marker

Also Published As

Publication number Publication date
KR102258096B1 (en) 2021-05-28
KR102258095B1 (en) 2021-05-28
KR102258097B1 (en) 2021-05-28

Similar Documents

Publication Publication Date Title
Motawi et al. Serum microRNAs as potential biomarkers for early diagnosis of hepatitis C virus-related hepatocellular carcinoma in Egyptian patients
CA2616277C (en) Urine markers for detection of bladder cancer
Yun et al. Exosomal miR-181b-5p downregulation in ascites serves as a potential diagnostic biomarker for gastric cancer-associated malignant ascites
Marín-Aguilera et al. Utility of urothelial mRNA markers in blood for staging and monitoring bladder cancer
KR20200002241A (en) Biomarker microRNA-26b or microRNA-4449 for diagnosing obesity and use thereof
CN110229899B (en) Plasma marker combinations for early diagnosis or prognosis prediction of colorectal cancer
KR102258095B1 (en) Composition for diagnosing liver cancer comprising an agent capable of measuring expression level of serum exosomal long non-coding RNA
Shoraka et al. Identification of plasma lncRNA-ATB levels in hepatitis B virus-related cirrhosis and non-cirrhotic chronic hepatitis B patients
KR102241455B1 (en) microRNA biomarker derived exosome for diagnosis of early liver cancer and use thereof
KR20220052461A (en) MicroRNA-1246 for diagnosing of ovarian cancer and use thereof
KR102317132B1 (en) Kit for diagnosing liver cancer comprising an agent capable of measuring expression level of miR-4661-5p
KR102505618B1 (en) Urinary exosome-derived miRNA gene biomarkers for diagnosis of antibody-mediated rejection in kidney allografts and use thereof
JP6608424B2 (en) Methods and kits for identifying precancerous colorectal polyps and colorectal cancer
KR20220041402A (en) Novel biomarker for diagnosing liver cancer
AU2021202735A1 (en) Urine markers for detection of bladder cancer
JP2008283945A (en) Marker for detecting hepatic carcinoma
KR20210024918A (en) Urinary exosome-derived miRNA gene biomarkers for diagnosis of T cell-mediated rejection in kidney allografts and use thereof
KR20240039492A (en) Serum exosomal SF3B4 marker composition for diagnosing early stage hepatocellular carcinoma for noninvasive in vitro diagnosis
KR102216943B1 (en) Biomarker for diagnosing liver cancer
KR102199000B1 (en) A novel biomarker for diagnosing liver cancer
KR20230126529A (en) Extracellular vesicles-derived miRNA gene biomarkders for diagnosis of pancreatic cancer and use thereof
KR20240058548A (en) Extracellular vesicles-derived miRNA gene biomarkders for diagnosis or prediction of recurrence of breast cancer and use thereof
KR102005146B1 (en) Biomarkers for diagnosing malignant mesothelioma and their uses
Elzeiny et al. The Crosstalk between Interferon and Transforming Growth Factor Beta Signaling Pathways in Hepatitis C Patients
KR20210042079A (en) Kit for diagnosis of early liver cancer

Legal Events

Date Code Title Description
A107 Divisional application of patent
GRNT Written decision to grant