KR100431586B1 - Method for detecting toxin-producing microcystis - Google Patents

Abstract

The present invention relates to a method for accurately and quickly detecting toxin producing microsis using a gene probe capable of specifically detecting toxin producing microsis.

SEQ ID NO: 1 and by using a gene probe composed of, including a base sequence of the second method of detecting seutiseu (Microcystis) when toxin producing micro-from the sample containing the bird and toxin production Micro when seutiseu detected that comprises the nucleotide sequence A kit is provided.

The method of the present invention can accurately detect toxin producing microcistis depending on whether or not toxin is produced even in a sample in which cyanobacteria strains are mixed, and thus, environmental monitoring for early detection of toxic microcistis, which is a big problem when green algae are generated. Can be used as a breakthrough labeling means.

Description

METHOOD FOR DETECTING TOXIN-PRODUCING MICROCYSTIS}

The present invention relates to a method for detecting toxin-producing microsis, and more specifically, to a method for detecting toxin-producing microsis accurately and rapidly by using a gene probe capable of specifically detecting toxin-producing microsis. will be.

Green algae is a type of hydration that means the freshwater lakes such as lakes, rivers and reservoirs turn green due to the proliferation of cyanobacteria, and the effects of green algae on the damage and ecosystem are summarized as follows. Can be.

First, in terms of visual aspects, there may be a visual discomfort caused by staining of algae or the formation of a green algae sample (scum), the death of a group of fish, and the like and the inhibition of recreational activity. In addition, in terms of ecology, it is possible to kill or inhabit native animals, change populations, and lose food due to ecosystem destruction. Economically, pollution by algae can lead to economic losses due to the loss of the local economy due to recreational and travel impediments and the lack of agricultural and industrial water. It may also have a detrimental effect on animal health, for example, by the consumption of oxygen by the decay of bacteria during the death of livestock or wild animals by cyanobacteria toxins, or by the death of large-sized algae, due to the lack of dissolved oxygen in water. And death of fish and aquatic organisms. In addition, as an influence on the water source, cyanoalgae toxin generation, odor taste generation, filter closure during the water treatment process and coagulation sedimentation inhibited during insufficient water purification treatment may occur.

Among affected by algal blooms and is very toxic issues that cyanobacteria produce that is to fragmented & Big problems and getting recently jubok, it is known that the toxin of the micro city seutiseu (Microcystis) cheat producing blue-green algae that cause the greatest problems (Carmichael, 1994; Sivonen et al ., 1995). The risk of acute toxicity from human consumption of large amounts of cyanobacterial water is unlikely, but microcystin-containing water can be used as a source of water, and if water purification is insufficient, Due to the possibility of exposure, it is necessary to monitor the current status and to monitor the microsystems that produce toxic substances in drinking water. In particular, the microcystine produced by microcistis has a stable structure that does not decompose in the water for 2-3 months after production (Kiviranta et al., 1991). .

At present, in order to monitor the occurrence of microalgae and other algae, we are conducting algal forecasting in four areas including Paldang Lake and Daecheong-Jumam-Chungju Lake, and will expand to all freshwater areas in the country where water is used. . In the case of bird forecasting, 1) when a bird warning is issued, the drinking plant should enhance chlorine disinfection, process high-purity water through activated carbon treatment, at the same time strengthen the toxin test, and 2) move the water intake during bird alert. It is necessary to secure an alternative source of water, and to stop the water supply of the simple water purification plant. 3) When toxins such as microcystine produced by cyanobacteria, the causative agent of green algae, are detected, the water supply is stopped (Ministry of Environment, 2000). The tidal forecast consists of four stages: advisory, alarm, generation, and clearing, and each stage is issued according to the following criteria (Ministry of Environment, 2000). 1) Caution: Chlorophyll a concentration 15-25mg / m3 when collecting 2 times continuously, Cyanobacteria 500-5,000 cells / ml (all of the above conditions apply), 2) Warning: Chlorophyll a concentration 25mg / m3 when collecting 2 times continuously More than 5,000 cells / ml of cyanobacteria (all of the above conditions), 3) Major occurrence: 2 times of chlorophyll a concentration of more than 100mg / ㎥, and more than 1,000,000 cells / ml of cyanobacteria, and green algae development (4) Release: Chlorophyll a concentration of 5 mg / m 3 or less.

Current monitoring methods for green algae development are performed by measuring and identifying cell numbers through periodic microscopic observations. However, microscopic observations were made due to the difficulty of counting in the microcistis forming colonies, the difficulty of accurate identification due to the unclear morphological characteristics important for each species classification and the easy change according to the environmental conditions, and the small cell number at the beginning of green algae. Difficulties in sensing have shown limitations. As a solution to these limitations, monitoring methods using molecular biological techniques have been developed, and gene probes for 16S rDNA gene, mcy gene, etc. have been produced (Schonhulber et al ., 1999; Matsunaga, T. et al . , 1999, Electrochimica Acta, 44: 3779-3784; Rudi et al ., 1998, 2000; Tillett, D. et al ., 2001, Appl. Environ.Microbiol., 67 (6): 2810-2818).

However, the development and application experiments of gene probes targeting 16S rDNA, mcy genes, etc. have only a range to selectively detect microsis among various microorganisms in environmental water, and toxin producing microcistis. Since the strain cannot be detected, there is a limitation of application as a gene probe for detecting only toxin producing microcistis strains.

Accordingly, an object of the present invention is to provide a method for specifically detecting only microcistis producing toxins in a sample containing algae.

Another object of the present invention is to provide a kit for detecting toxin producing microcistis.

FIG. 1- Photographs of 12 different Microcystis sp. Strains electrophoresed after polymerase chain reaction using the gene probe of the present invention (M: Marker, 1: NIER-10001, 2: NIER-10008, 3: NIER-10010, 4: NIER-10015, 5: NIER-10037, 6: NIER-10039, 7: NIER-10051, 8: K-AG10073, 9: KOWACO, 10: Inje, 11: BC10, 12: PCC7005).

Figure 2-12 different microsis genera Strains were electrophoresed after polymerase chain reaction using the gene probe of the present invention (M: Marker, 1: PCC7806, 2: PCC7820, 3: PCC7941, 4: CCAP1450 / 1, 5: CCAP1450 / 3, 6: CCAP1450 / 4, 7: CCAP1450 / 6, 8: NIER-10021, 9: NIER-10030, 10: NIER-10045, 11: NIER-10022, 12: NIER-10029).

3-8 different microsis genera Strains and four Anavena genusAnabaena sp.)Strains were electrophoresed after polymerase chain reaction using the gene probe of the present invention (M: Marker, 1: BC18, 2: NIER-10004,3: NIER-10025, 4: NIER-10056, 5: NIER-10017, 6: NIER-10020, 7: PUCC-1002, 8: NC5, 9: K-AG10008, 10: K-AG10011, 11: K-AG10082, 12: K-AG10083).

4-4 different Anavenas Strains, two genus OsilatoriaOscillatoria sp.)Strains, 1 NorthstockNostoc sp.)Strains, two genusSynechococcus sp.)Strains, three bacterial strains were electrophoresed after polymerase chain reaction using the gene probe of the present invention (M: Marker, 1: NIER-10016, 2: ATCC-22664, 3: K- AG10059, 4: K-AG10064, 5: NIER-10027, 6: NIER-10042, 7: CCAP1453 / 18, 8: CCAP1479 / 7, 9: CCAP1479 / 1B, 10: C.C. acidovorans), 11: p. Aruginosa (P. aeruginosa), 12: p.P. putida)).

Figure 5- After mixing different algae strains depending on the toxin production, electrophoresis after performing the polymerase chain reaction using the gene probe of the present invention (M: marker, 1: negative control, 2: positive control) , 3: Mix 1, 4: Mix 2, 5: Mix 3, 6: Mix 4, 7: Mix 5).

The present inventors have found that when some sequences of the microcystin synthetase gene (mcyA) are used, only toxin-producing microcistis strains among various microorganisms in environmental water can be detected.

According to one aspect of the present invention, a method from the sample by using a gene probe composed including a nucleotide sequence of SEQ ID NO: 1 and 2 comprises a bird for detecting seutiseu (Microcystis) when toxin producing micro is provided.

According to another aspect of the present invention, there is provided a kit for detecting toxin producing microcistis comprising the gene probe.

EMBODIMENT OF THE INVENTION Hereinafter, this invention is demonstrated in detail.

Gene probe of the present invention is a microsisMicrocystis)of It is part of the nucleotide sequence constituting the microcystine synthase gene (mcyA).

Gene probes of the present invention is listed takes the 21 to each other the base sequence of mcyA genes from other micro during seutiseu strain from the DNA and protein sequence database of GenBank and was fabricated find the specific retention portion to through which, in mcyA gene Located at 2153-2173 (bp) and 3265-3283. The base sequences of the gene probe for detecting toxin producing microcistis of the present invention are shown in SEQ ID NOs: 1 (Cho09F) and 2 (Cho10R).

Conventional monitoring methods for microsis using molecular biology techniques use gene probes targeting 16S rDNA gene, mcy gene, etc. (Schonhulber et al ., 1999; Matsunaga, T. et al ., 1999, Electrochimica Acta, 44: 3779-3784; Rudi et al ., 1998, 2000; Tillett, D. et al ., 2001, Appl. Environ.Microbiol., 67 (6): 2810-2818), these conventional detection methods It is possible to detect microcistis, but not to detect microcistis strains that actually produce important toxins. However, when using the gene probe of the present invention, only toxin-producing microcistis can be detected specifically and quickly.

When PCR is performed on a toxin producing microcistis strain using the gene probe of the present invention, a PCR product of about 1.1 Kb is formed, which is a microcystin synthetase gene (mcyA) involved in cyanobacteria toxin synthesis. 2153 (nt) to 3283 (nt) of the position corresponding to the gene probe of the present invention is used as a primer for PCR, the presence of toxin production microsis by performing PCR from a sample containing algae In particular, the gene probe of the present invention is a microcistis strain that produces the major microcystine-microcystine-LR, -LA, -RR, -YR and nodularin in fresh water. Can be detected specifically.

By using a gene probe detectable toxin producing micro upon the type of seutiseu in the strain of the present invention include, for example, when micro seutiseu Rouge labor (M. aeruginosa), micro-irregularities during seutiseu disk (M. viridis), micro when the seutiseu M. ichthyoblabe, M. novacekii .

The method of the present invention is useful for the specific detection of toxin producing microcistises from environmental water samples in lakes or rivers, especially from samples containing cyanobacteria.

It is also predicted that the mcyA gene of microcistis or the gene involved in cyanobacteria toxin synthesis comprising the gene probe of the present invention may be available for the specific detection of toxin producing microcistis.

In addition, the gene probe of the present invention can be included and used in a detection kit such as a gene chip.

Hereinafter, the present invention will be described in more detail with reference to Examples.

Example 1 Preparation of Sample

Microcystis cultured separatelyMicrocystis) Collecting cell aggregates by centrifugation by collecting fresh water with strains or green algae, and then using 12 easy microsystemis using DNeasy Plant Mini Kit (Qiagen, Germany). Strain (1: microcistis aeruginosa (M. aeruginosa) NIER-10001, 2: M.aeruginosaNIER-10008, 3: M.aeruginosaNIER-10010, 4: M.aeruginosaNIER-10015, 5: M.aeruginosaNIER-10037, 6: M.aeruginosaNIER-10039, 7: M.aeruginosaNIER-10051, 8: M.aeruginosaK-AG10073, 9: M.aeruginosaKOWACO, 10: M.aeruginosaInje, 11: M.aeruginosaBC10, 12: M.aeruginosaGenomic DNA for PCC7005) was extracted.

<Example 2> toxin production of each strain investigation (analysis by ELISA)

Toxin production of 12 different microcistis strains from the extracted samples was measured using a commercially available Enzyme Linked Immuno-sorbent Assay (ELISA) Kit (Microcystin Tube Kit, Cat. # ET022, EnviroLogix, USA). It was. For each experiment, a 0.5 ppb calibrator and a 3 ppb calibrator are used to measure the color change and OD (measured by UV spectrophotometer at 450 nm) for each sample and compare them to estimate approximate microcystine concentrations. The correlation between 0.5 ppb and 3 ppb calibrator was shown in a regression line to calculate the microcystine concentration of each sample. The results are shown in Table 1 below.

Measurement result of toxin production of 12 different microcistis strains by ELISA analysis Sample / Strain O.D. * Calculated microcystine concentration (ppb) 0.5 ppb calibrator 1.252 0.5 3 ppb calibrator 0.801 3 NIER-10001 2 ND ** (-3.65>) NIER-10008 2 ND (-3.65>) NIER-10010 0.152 6.60 NIER-10015 0.378 5.34 NIER-10037 1.023 1.77 NIER-10039 0.064 7.09 NIER-10051 1.555 ND (-1.18) K-AG 10073 1.643 ND (-1.67) KOWACO 2 ND (-2.51) Inje 1.907 ND (-2.23) BC 10 1.902 ND (-2.22) PCC7005 1.719 ND (-1.68)

* O.D. Is measured at 450nm.

** ND (Not measured below detection limit)

As a result of ELISA analysis, Crocistis aeruginosa (M. aeruginosa) NIER-10010, NIER-10015, NIER-10037 and NIER-10039 have been shown to produce toxins.

Example 3 PCR (Polymerase Chain Reaction) Reaction for Each Sample

12 different microsisses obtained from Example 1 above Using the DNA samples of the strains, PCR was performed using the gene probes of the present invention (Cho09F and Cho10R, respectively) shown in SEQ ID NOs: 1 and 2 as primers, and then the reaction product was electrophoresed, as shown in FIG. (0.8% agarose gel (BMA, USA), marker: 1 kb DNA ladder (Gibco, USA).

PCR was performed under the following conditions.

Composition of the reaction mixture :

1 μl of genomic DNA

2 pL 100 pmol Cho09F

2 pL 100 pmol Cho10R

2 μl 10 mM dNTP mixture

5 μl of 10 × Han-OMNI PCR buffer

0.2µl of Taq DNA polymerase (Genenmed, Korea)

38.8 μl dH ₂ O

Reaction conditions (25 repetitions except for initial denaturation and final extension) :

Initial denaturation process-95 ℃, 4 minutes

Denaturation process-95 ℃, 20 seconds

Annealing process-63 ℃, 30 seconds

Polymerization process-72 ℃, 1 minute

Final extension process-72 ° C, 7 minutes

From the left each lane is M: marker (1kb DNA ladder, Gibco, USA), 1: M. aeruginosa NIER-10001, 2: M. aeruginosa NIER-10008, 3: M. aeruginosa NIER-10010, 4: M. aeruginosa NIER-10015, 5: M. aeruginosa NIER-10037, 6: M. aeruginosa NIER-10039, 7: M. aeruginosa NIER-10051, 8: M. aeruginosa K-AG10073, 9: M. aeruginosa KOWACO, 10: M. aeruginosa Inje, 11: M. aeruginosa BC 10, 12: M. aeruginosa PCC7005.

For, when the micro seutiseu found to produce the toxin through the ELISA results of each strain, as shown in Fig. 1 Rouge labor (M. aeruginosa) NIER-10010 ( 3), NIER-10015 (4), NIER-10037 Only products of (5) and NIER-10039 (6) formed polymerase chain reaction.

<Example 4> Identification of other strains for the detection effect of toxin-producing cyanobacteria using the gene probe of the present invention

1. Using the same method as described in Example 1-3, 12 different microcistis strains were tested for the detection effect of toxin producing cyanobacteria using the gene probe. The results are shown in Figure 2 (M: marker, 1: M. aeruginosa PCC7806, 2: M. aeruginosa PCC7820, 3: M. aeruginosa PCC7941, 4: M. aeruginosa CCAP1450 / 1, 5: M. aeruginosa CCAP1450 / 3, 6: M. aeruginosa CCAP1450 / 4, 7: M. aeruginosa CCAP1450 / 6, 8: M. ichthyoblabe NIER-10021, 9: M. ichthyoblabe NIER-10030, 10: M. ichthyoblabe NIER-10045, 11: M novacekii NIER-10022, 12: M. novacekii NIER-10029).

As a result, M. aeruginosa PCC7806 (1), PCC7820 (2), PCC7941 (3), and CCAP1450 / 6 (7) were found to produce toxin through ELISA experiments of the respective strains. Only the product of the polymerase chain reaction formed.

2. Using the same method as in Example 1-3, the gene probe was used to detect toxin-producing cyanobacteria against eight different microcistis strains and four different anabena strains. A confirmatory test was done. The results are shown in Figure 3 (M: marker, 1: M. novacekii BC18, 2: M. sp. NIER-10004, 3: M. sp. NIER-10025, 4: M. sp. NIER-10056, 5: M. viridis NIER-10017, 6: M. viridis NIER-10020, 7: M. viridis PUCC-1002, 8: M. wesenbergii NC5, 9: A. affinis K-AG10008, 10: A. flos-aquae K-AG10011, 11: A. flos-aquae K-AG10082, 12: A. flos-aquae K-AG10083).

As a result, the microcistis genus NIER-10004 (2) and microcistis viridis (which were found to produce toxins through ELISA experiments of each strain).M. viridis)NIER-10017 (5), Only NIER-10020 (6) formed the product of the polymerase chain reaction.

3. Using the same method as described in Example 1-3, three strains, that is, four different Anabaena strains, two Oscillatoria strains, and one furnace Nostoc strains and two Synechococcus strains were tested for the detection effect of toxin producing cyanobacteria using the gene probe. Was also carried out the same polymerase chain reaction for other bacteria, Pseudomonas coma (Comamonas), Pseudomonas (Pseudomonas) strain as a control. The results are shown in FIG. 4 (M: marker, 1: A. macrospora NIER-10016, 2: A. sp . ATCC-22664, 3: A. sp. AG10059, 4: A. special K-AG10064, 5: O. sancta NIER-10027, 6: O. sancta NIER-10042, 7: Northstock Nostoc ellipsosporum CCAP1453 / 18, 8: Synechococcus bacillaris CCAP1479 / 7, 9: Synechococcus elongatus CCAP1479 / 1B, 10: Comamonas Ashdoborance ( C. acidovorans) , 11: P. aeruginosa , 12: P. putida ).

As a result, it was confirmed that there was no toxin producing strain through ELISA experiment of each strain, and the product of polymerase chain reaction was not formed in all strains.

4. Using the same method as that shown in Example 1-3, the cyanobacteria strains were mixed differently depending on the toxin production, and then the identification test for the effect of detecting toxin-producing cyanobacteria was performed using the gene probe. The results are shown in FIG. 5 (M: marker, 1: negative control, 2: positive control, 3: Mix 1 (M. aeruginosa Inje, which does not produce toxin, and M. sp. NIER-10004, which produces toxin, NIER-10039, PCC7806), a mix of PCC7820), 4: Mix 2 (M. aeruginosa Inje, M. aeruginosa K-AG10073, which does not produce toxins, and M. aeruginosa NIER-10039, PCC7806, PCC7820, which produce toxins) ), 5: Mix 3 (mixture of M. aeruginosa Inje, which does not produce toxin, K-AG10073, CCAP1450 / 1 and PCC7806, PCC7820, which produces toxin), 6: Mix 4 (Inje, K-, which does not produce toxin) AG10073, CCAP1450 / 1, BC18 and toxin producing PCC7820), 7: Mix 5 (mix of Microcystis PCC7806, Anabaena K-AG10082, Oscillatoria NIER-10027, Nostoc CCAP1453 / 18 and Synechococcus CCAP1479 / 1B).

As a result, the toxin producing microcistis except for lane 1 where the toxin producing microcistis strains were not mixed. The products of the polymerase chain reaction were formed in all the samples mixed with one or more strains.

Therefore, as can be seen from the above example, it can be seen that by performing PCR from each sample using the gene probe of the present invention, microcistis strains producing toxins can be detected relatively simply, quickly and accurately. .

The method of the present invention is a labeling means for specifically detecting toxin producing microcistis, wherein the toxin producing microcistis is isolated and cultured. In addition to the strains, samples containing mixed cyanobacteria strains can accurately detect toxin-producing microsistis depending on whether or not toxins are produced. It can be used as a landmark labeling means.

Claims (7)

Method using the gene probe configured to include a nucleotide sequence of SEQ ID NO: 1 and 2 for detecting the toxin producing micro during seutiseu (Microcystis) from the sample containing the algae. The method of claim 1, wherein the gene probe method for detecting the toxin producing micro during seutiseu (Microcystis) from the sample containing the bird being applied to the polymerase chain reaction. The method of claim 1, wherein the sample is an environmental water of a lake or a river. The method of claim 1, wherein the sample is a mixture of cyanobacteria. The method of claim 1, wherein the gene probe is selected from genes involved in cyanobacteria toxin synthesis. 3. The method of claim 2, wherein said gene probe is selected from the mcyA gene of microcistis. A kit for detecting toxin-producing microcistis comprising a nucleotide sequence of SEQ ID NOs: 1 and 2.