JPWO2022073011A5 - - Google Patents
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- Publication number
- JPWO2022073011A5 JPWO2022073011A5 JP2023519657A JP2023519657A JPWO2022073011A5 JP WO2022073011 A5 JPWO2022073011 A5 JP WO2022073011A5 JP 2023519657 A JP2023519657 A JP 2023519657A JP 2023519657 A JP2023519657 A JP 2023519657A JP WO2022073011 A5 JPWO2022073011 A5 JP WO2022073011A5
- Authority
- JP
- Japan
- Prior art keywords
- nucleic acid
- acid molecules
- methylation
- distribution
- sensitive restriction
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US202063086000P | 2020-09-30 | 2020-09-30 | |
| US63/086,000 | 2020-09-30 | ||
| US202063105183P | 2020-10-23 | 2020-10-23 | |
| US63/105,183 | 2020-10-23 | ||
| PCT/US2021/071648 WO2022073011A1 (en) | 2020-09-30 | 2021-09-29 | Methods and systems to improve the signal to noise ratio of dna methylation partitioning assays |
Publications (3)
| Publication Number | Publication Date |
|---|---|
| JP2023544720A JP2023544720A (ja) | 2023-10-25 |
| JPWO2022073011A5 true JPWO2022073011A5 (https=) | 2024-09-30 |
| JP2023544720A5 JP2023544720A5 (https=) | 2024-09-30 |
Family
ID=78333328
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2023519657A Pending JP2023544720A (ja) | 2020-09-30 | 2021-09-29 | Ｄｎａメチル化分配アッセイのシグナル対ノイズ比を改善するための方法およびシステム |
| JP2023519658A Pending JP2023544721A (ja) | 2020-09-30 | 2021-09-29 | 分配およびメチル化依存性ヌクレアーゼを使用してｄｎａを解析するための組成物および方法 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2023519658A Pending JP2023544721A (ja) | 2020-09-30 | 2021-09-29 | 分配およびメチル化依存性ヌクレアーゼを使用してｄｎａを解析するための組成物および方法 |
Country Status (5)
| Country | Link |
|---|---|
| US (3) | US20220154285A1 (https=) |
| EP (2) | EP4222279A1 (https=) |
| JP (2) | JP2023544720A (https=) |
| CA (2) | CA3193183A1 (https=) |
| WO (2) | WO2022073011A1 (https=) |
Families Citing this family (13)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US12234518B2 (en) | 2020-10-23 | 2025-02-25 | Guardant Health, Inc. | Compositions and methods for analyzing DNA using partitioning and base conversion |
| EP4314329A1 (en) * | 2021-03-25 | 2024-02-07 | Guardant Health, Inc. | Methods and compositions for quantifying immune cell dna |
| IL293202A (en) * | 2022-05-22 | 2023-12-01 | Nucleix Ltd | Useful combinations of restriction enzymes |
| WO2023244983A1 (en) * | 2022-06-13 | 2023-12-21 | Freenome Holdings, Inc. | Sequence process validation methods and compositions |
| JP2025522763A (ja) * | 2022-06-30 | 2025-07-17 | ガーダント ヘルス， インコーポレイテッド | 異常にメチル化されたｄｎａの富化 |
| NL2033070B1 (en) * | 2022-09-19 | 2024-03-25 | Univ Twente | Method for detecting CpG methylation in a DNA target sequence |
| JP2026501670A (ja) * | 2023-01-04 | 2026-01-16 | ナテラ， インコーポレイテッド | メチル化標的ｄｎａ分子を増幅するための方法および組成物 |
| WO2024159118A1 (en) * | 2023-01-27 | 2024-08-02 | The Regents Of The University Of California | Methods of hyper- and hypo-methylation analysis for disease detection |
| WO2024211551A1 (en) | 2023-04-06 | 2024-10-10 | Glaxosmithkline Intellectual Property (No.4) Limited | Methods for treating and monitoring cancer |
| EP4713480A1 (en) * | 2023-05-19 | 2026-03-25 | Nucleix Ltd. | Detecting methylation changes in dna samples using restriction enzymes and high throughput sequencing |
| CN116926194A (zh) * | 2023-06-29 | 2023-10-24 | 纳昂达(南京)生物科技有限公司 | 一种检测dna样本甲基化状态的方法 |
| WO2025106807A1 (en) * | 2023-11-16 | 2025-05-22 | The Board Of Trustees Of The Leland Stanford Junior University | Classification of samples using methylation enrichment |
| WO2025165106A1 (ko) * | 2024-01-29 | 2025-08-07 | 주식회사 지씨지놈 | 핵산의 메틸화 마커 검출 방법 |
Family Cites Families (35)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6582908B2 (en) | 1990-12-06 | 2003-06-24 | Affymetrix, Inc. | Oligonucleotides |
| US20030017081A1 (en) | 1994-02-10 | 2003-01-23 | Affymetrix, Inc. | Method and apparatus for imaging a sample on a device |
| JP3102800B2 (ja) | 1994-08-19 | 2000-10-23 | パーキン−エルマー コーポレイション | 増幅及び連結反応の共役法 |
| GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
| GB9626815D0 (en) | 1996-12-23 | 1997-02-12 | Cemu Bioteknik Ab | Method of sequencing DNA |
| US6969488B2 (en) | 1998-05-22 | 2005-11-29 | Solexa, Inc. | System and apparatus for sequential processing of analytes |
| AR021833A1 (es) | 1998-09-30 | 2002-08-07 | Applied Research Systems | Metodos de amplificacion y secuenciacion de acido nucleico |
| US7501245B2 (en) | 1999-06-28 | 2009-03-10 | Helicos Biosciences Corp. | Methods and apparatuses for analyzing polynucleotide sequences |
| US6818395B1 (en) | 1999-06-28 | 2004-11-16 | California Institute Of Technology | Methods and apparatus for analyzing polynucleotide sequences |
| WO2001023610A2 (en) | 1999-09-29 | 2001-04-05 | Solexa Ltd. | Polynucleotide sequencing |
| WO2002004680A2 (en) | 2000-07-07 | 2002-01-17 | Visigen Biotechnologies, Inc. | Real-time sequence determination |
| AU2002359522A1 (en) | 2001-11-28 | 2003-06-10 | Applera Corporation | Compositions and methods of selective nucleic acid isolation |
| CA2519860C (en) | 2003-03-21 | 2018-01-16 | Santaris Pharma A/S | Short interfering rna (sirna) analogues |
| CA2542542C (en) * | 2003-10-21 | 2015-09-15 | Orion Genomics Llc | Method of detecting a quantity of methylation at a locus |
| US7169560B2 (en) | 2003-11-12 | 2007-01-30 | Helicos Biosciences Corporation | Short cycle methods for sequencing polynucleotides |
| US7170050B2 (en) | 2004-09-17 | 2007-01-30 | Pacific Biosciences Of California, Inc. | Apparatus and methods for optical analysis of molecules |
| US7315019B2 (en) | 2004-09-17 | 2008-01-01 | Pacific Biosciences Of California, Inc. | Arrays of optical confinements and uses thereof |
| US7482120B2 (en) | 2005-01-28 | 2009-01-27 | Helicos Biosciences Corporation | Methods and compositions for improving fidelity in a nucleic acid synthesis reaction |
| US7282337B1 (en) | 2006-04-14 | 2007-10-16 | Helicos Biosciences Corporation | Methods for increasing accuracy of nucleic acid sequencing |
| US8486630B2 (en) | 2008-11-07 | 2013-07-16 | Industrial Technology Research Institute | Methods for accurate sequence data and modified base position determination |
| US8394584B2 (en) * | 2008-12-19 | 2013-03-12 | The Board Of Trustees Of The University Of Illinois | Detecting and sorting methylated DNA using a synthetic nanopore |
| US20130157266A1 (en) | 2009-03-15 | 2013-06-20 | Ribomed Biotechnologies, Inc. | Abscription based molecular detection of dna methylation |
| US20110237444A1 (en) * | 2009-11-20 | 2011-09-29 | Life Technologies Corporation | Methods of mapping genomic methylation patterns |
| US8835358B2 (en) | 2009-12-15 | 2014-09-16 | Cellular Research, Inc. | Digital counting of individual molecules by stochastic attachment of diverse labels |
| US20160040229A1 (en) | 2013-08-16 | 2016-02-11 | Guardant Health, Inc. | Systems and methods to detect rare mutations and copy number variation |
| GB2533006B (en) | 2012-09-04 | 2017-06-07 | Guardant Health Inc | Systems and methods to detect copy number variation |
| ES2660989T3 (es) | 2013-12-28 | 2018-03-27 | Guardant Health, Inc. | Métodos y sistemas para detectar variantes genéticas |
| CN107002122B (zh) | 2014-07-25 | 2023-09-19 | 华盛顿大学 | 确定导致无细胞dna的产生的组织和/或细胞类型的方法以及使用其鉴定疾病或紊乱的方法 |
| US11384382B2 (en) * | 2016-04-14 | 2022-07-12 | Guardant Health, Inc. | Methods of attaching adapters to sample nucleic acids |
| CN109415763A (zh) * | 2016-05-03 | 2019-03-01 | 大学健康网络 | 捕获无细胞的甲基化dna的方法及其用途 |
| KR102610098B1 (ko) | 2016-07-06 | 2023-12-04 | 가던트 헬쓰, 인크. | 무세포 핵산의 프래그멘톰 프로파일링을 위한 방법 |
| US9850523B1 (en) | 2016-09-30 | 2017-12-26 | Guardant Health, Inc. | Methods for multi-resolution analysis of cell-free nucleic acids |
| CA3046007A1 (en) | 2016-12-22 | 2018-06-28 | Guardant Health, Inc. | Methods and systems for analyzing nucleic acid molecules |
| WO2019157529A1 (en) * | 2018-02-12 | 2019-08-15 | 10X Genomics, Inc. | Methods characterizing multiple analytes from individual cells or cell populations |
| EP4567131A3 (en) * | 2019-01-31 | 2025-09-03 | Guardant Health, Inc. | Compositions and methods for isolating cell-free dna |
-
2021
- 2021-09-29 US US17/489,687 patent/US20220154285A1/en active Pending
- 2021-09-29 JP JP2023519657A patent/JP2023544720A/ja active Pending
- 2021-09-29 EP EP21806592.8A patent/EP4222279A1/en active Pending
- 2021-09-29 US US17/489,677 patent/US20220162670A1/en active Pending
- 2021-09-29 WO PCT/US2021/071648 patent/WO2022073011A1/en not_active Ceased
- 2021-09-29 CA CA3193183A patent/CA3193183A1/en active Pending
- 2021-09-29 EP EP21798252.9A patent/EP4222278A1/en active Pending
- 2021-09-29 JP JP2023519658A patent/JP2023544721A/ja active Pending
- 2021-09-29 CA CA3193090A patent/CA3193090A1/en active Pending
- 2021-09-29 WO PCT/US2021/071649 patent/WO2022073012A1/en not_active Ceased
-
2022
- 2022-12-22 US US18/087,724 patent/US11946106B2/en active Active
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