JP7620803B2 - 組織特異的メチル化マーカー - Google Patents
組織特異的メチル化マーカー Download PDFInfo
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- JP7620803B2 JP7620803B2 JP2020548776A JP2020548776A JP7620803B2 JP 7620803 B2 JP7620803 B2 JP 7620803B2 JP 2020548776 A JP2020548776 A JP 2020548776A JP 2020548776 A JP2020548776 A JP 2020548776A JP 7620803 B2 JP7620803 B2 JP 7620803B2
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6816—Hybridisation assays characterised by the detection means
- C12Q1/6823—Release of bound markers
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- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B15/00—ICT specially adapted for analysing two-dimensional [2D] or three-dimensional [3D] molecular structures, e.g. structural or functional relations or structure alignment
- G16B15/30—Drug targeting using structural data; Docking or binding prediction
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
- G16B25/20—Polymerase chain reaction [PCR]; Primer or probe design; Probe optimisation
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- C—CHEMISTRY; METALLURGY
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- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/112—Disease subtyping, staging or classification
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/118—Prognosis of disease development
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/154—Methylation markers
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/172—Haplotypes
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- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Organic Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Biotechnology (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Pathology (AREA)
- Medical Informatics (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Oncology (AREA)
- Hospice & Palliative Care (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Medicinal Chemistry (AREA)
- Pharmacology & Pharmacy (AREA)
- Crystallography & Structural Chemistry (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| JP2024109900A JP2024156679A (ja) | 2018-03-15 | 2024-07-08 | 組織特異的メチル化マーカー |
Applications Claiming Priority (5)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201862643649P | 2018-03-15 | 2018-03-15 | |
| US62/643,649 | 2018-03-15 | ||
| US201862769928P | 2018-11-20 | 2018-11-20 | |
| US62/769,928 | 2018-11-20 | ||
| PCT/US2019/022504 WO2019178496A1 (en) | 2018-03-15 | 2019-03-15 | Tissue-specific methylation marker |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024109900A Division JP2024156679A (ja) | 2018-03-15 | 2024-07-08 | 組織特異的メチル化マーカー |
Publications (4)
| Publication Number | Publication Date |
|---|---|
| JP2021518107A JP2021518107A (ja) | 2021-08-02 |
| JPWO2019178496A5 JPWO2019178496A5 (https=) | 2022-03-22 |
| JP2021518107A5 JP2021518107A5 (https=) | 2022-03-22 |
| JP7620803B2 true JP7620803B2 (ja) | 2025-01-24 |
Family
ID=67908065
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2020548776A Active JP7620803B2 (ja) | 2018-03-15 | 2019-03-15 | 組織特異的メチル化マーカー |
| JP2024109900A Pending JP2024156679A (ja) | 2018-03-15 | 2024-07-08 | 組織特異的メチル化マーカー |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| JP2024109900A Pending JP2024156679A (ja) | 2018-03-15 | 2024-07-08 | 組織特異的メチル化マーカー |
Country Status (11)
| Country | Link |
|---|---|
| US (2) | US11884966B2 (https=) |
| EP (1) | EP3766076A4 (https=) |
| JP (2) | JP7620803B2 (https=) |
| CN (2) | CN112534506B (https=) |
| AU (1) | AU2019233897B2 (https=) |
| CA (1) | CA3093971A1 (https=) |
| IL (1) | IL277306A (https=) |
| PH (1) | PH12020551712A1 (https=) |
| SG (1) | SG11202008957VA (https=) |
| TW (1) | TWI848941B (https=) |
| WO (1) | WO2019178496A1 (https=) |
Families Citing this family (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP7620803B2 (ja) | 2018-03-15 | 2025-01-24 | グレイル インコーポレイテッド | 組織特異的メチル化マーカー |
| KR102155044B1 (ko) * | 2019-10-08 | 2020-09-11 | 주식회사 레피다인 | 생물학적 시료의 간암 조직 기원 여부를 판별하는 방법 |
| KR102103885B1 (ko) * | 2019-10-08 | 2020-04-24 | 주식회사 레피다인 | 생물학적 시료의 간 조직 유래 여부를 판별하는 방법 |
| JP2023516525A (ja) * | 2019-12-26 | 2023-04-20 | 広州市基准医療有限公司 | Dnaメチル化バイオマーカーの組み合わせ、検出方法および試薬キット |
| GB2612447B (en) * | 2020-04-24 | 2025-08-13 | Univ Cornell | Methods for detecting tissue damage, graft versus host disease, and infections using cell-free DNA profiling |
| EP4291677A2 (en) | 2021-02-09 | 2023-12-20 | F. Hoffmann-La Roche AG | Methods for base-level detection of methylation in nucleic acids |
| WO2023144704A1 (en) * | 2022-01-25 | 2023-08-03 | Gene Solutions Joint Stock Company | Systems and methods for detecting tumor dna in mammalian blood |
| EP4540408A1 (en) | 2022-06-14 | 2025-04-23 | F. Hoffmann-La Roche AG | Detection of epigenetic cytosine modification |
| WO2024112741A1 (en) * | 2022-11-23 | 2024-05-30 | Salk Institute For Biological Studies | Dna methylation barcodes for identifying brain cells |
| CN117476222B (zh) * | 2023-09-28 | 2024-10-25 | 上海交通大学医学院附属瑞金医院 | 一种肠癌肝转移的风险预测方法、系统和电子设备 |
Citations (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2015536639A (ja) | 2012-09-20 | 2015-12-24 | ザ チャイニーズ ユニバーシティ オブ ホンコン | 血漿による胎児または腫瘍のメチロームの非侵襲的決定 |
| US20160017419A1 (en) | 2014-07-18 | 2016-01-21 | The Chinese University Of Hong Kong | Methylation pattern analysis of tissues in a dna mixture |
| JP2017514499A (ja) | 2014-05-09 | 2017-06-08 | ライフコーデックス アーゲー | 特別な細胞タイプに由来するdnaの検出とそれに関連する方法 |
| JP2017516504A (ja) | 2014-06-04 | 2017-06-22 | クエスト ダイアグノスティクス インベストメンツ インコーポレイテッド | 結腸直腸癌のためのメチル化マーカー |
| WO2017129716A1 (en) | 2016-01-29 | 2017-08-03 | Epigenomics Ag | Methods for detecting cpg methylation of tumor-derived dna in blood samples |
| WO2017212428A1 (en) | 2016-06-07 | 2017-12-14 | The Regents Of The University Of California | Cell-free dna methylation patterns for disease and condition analysis |
Family Cites Families (7)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| MX349568B (es) | 2010-11-30 | 2017-08-03 | Univ Hong Kong Chinese | Deteccion de aberraciones geneticas o moleculares asociadas con el cancer. |
| US9732390B2 (en) * | 2012-09-20 | 2017-08-15 | The Chinese University Of Hong Kong | Non-invasive determination of methylome of fetus or tumor from plasma |
| CN106232833A (zh) | 2014-01-30 | 2016-12-14 | 加利福尼亚大学董事会 | 用于非侵入性诊断的甲基化单体型分析(monod) |
| EP3132055A2 (en) * | 2014-04-14 | 2017-02-22 | Yissum Research and Development Company of the Hebrew University of Jerusalem Ltd. | A method and kit for determining the tissue or cell origin of dna |
| EP2942400A1 (en) * | 2014-05-09 | 2015-11-11 | Lifecodexx AG | Multiplex detection of DNA that originates from a specific cell-type |
| ES2879964T3 (es) * | 2014-12-12 | 2021-11-23 | Exact Sciences Dev Co Llc | Composiciones y métodos para realizar ensayos de detección de metilación |
| JP7620803B2 (ja) | 2018-03-15 | 2025-01-24 | グレイル インコーポレイテッド | 組織特異的メチル化マーカー |
-
2019
- 2019-03-15 JP JP2020548776A patent/JP7620803B2/ja active Active
- 2019-03-15 SG SG11202008957VA patent/SG11202008957VA/en unknown
- 2019-03-15 WO PCT/US2019/022504 patent/WO2019178496A1/en not_active Ceased
- 2019-03-15 CN CN201980032333.3A patent/CN112534506B/zh active Active
- 2019-03-15 CN CN202510148128.0A patent/CN119955906A/zh active Pending
- 2019-03-15 CA CA3093971A patent/CA3093971A1/en active Pending
- 2019-03-15 EP EP19768415.2A patent/EP3766076A4/en active Pending
- 2019-03-15 TW TW108108991A patent/TWI848941B/zh active
- 2019-03-15 AU AU2019233897A patent/AU2019233897B2/en active Active
- 2019-03-15 US US16/354,799 patent/US11884966B2/en active Active
-
2020
- 2020-09-13 IL IL277306A patent/IL277306A/en unknown
- 2020-10-15 PH PH12020551712A patent/PH12020551712A1/en unknown
-
2023
- 2023-12-13 US US18/538,995 patent/US20240191282A1/en active Pending
-
2024
- 2024-07-08 JP JP2024109900A patent/JP2024156679A/ja active Pending
Patent Citations (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP2015536639A (ja) | 2012-09-20 | 2015-12-24 | ザ チャイニーズ ユニバーシティ オブ ホンコン | 血漿による胎児または腫瘍のメチロームの非侵襲的決定 |
| JP2017514499A (ja) | 2014-05-09 | 2017-06-08 | ライフコーデックス アーゲー | 特別な細胞タイプに由来するdnaの検出とそれに関連する方法 |
| JP2017516504A (ja) | 2014-06-04 | 2017-06-22 | クエスト ダイアグノスティクス インベストメンツ インコーポレイテッド | 結腸直腸癌のためのメチル化マーカー |
| US20160017419A1 (en) | 2014-07-18 | 2016-01-21 | The Chinese University Of Hong Kong | Methylation pattern analysis of tissues in a dna mixture |
| WO2017129716A1 (en) | 2016-01-29 | 2017-08-03 | Epigenomics Ag | Methods for detecting cpg methylation of tumor-derived dna in blood samples |
| WO2017212428A1 (en) | 2016-06-07 | 2017-12-14 | The Regents Of The University Of California | Cell-free dna methylation patterns for disease and condition analysis |
Also Published As
| Publication number | Publication date |
|---|---|
| IL277306A (en) | 2020-10-29 |
| JP2024156679A (ja) | 2024-11-06 |
| WO2019178496A1 (en) | 2019-09-19 |
| CA3093971A1 (en) | 2019-09-19 |
| SG11202008957VA (en) | 2020-10-29 |
| TWI848941B (zh) | 2024-07-21 |
| EP3766076A1 (en) | 2021-01-20 |
| KR20210023804A (ko) | 2021-03-04 |
| EP3766076A4 (en) | 2021-12-29 |
| US20190390257A1 (en) | 2019-12-26 |
| JP2021518107A (ja) | 2021-08-02 |
| AU2019233897A1 (en) | 2020-10-22 |
| US20240191282A1 (en) | 2024-06-13 |
| TW202010845A (zh) | 2020-03-16 |
| CN119955906A (zh) | 2025-05-09 |
| AU2019233897B2 (en) | 2024-10-24 |
| PH12020551712A1 (en) | 2021-06-21 |
| CN112534506A (zh) | 2021-03-19 |
| US11884966B2 (en) | 2024-01-30 |
| CN112534506B (zh) | 2025-03-04 |
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