JP2007510401A - 高度に多型の標的配列の一塩基多型分析 - Google Patents

高度に多型の標的配列の一塩基多型分析 Download PDF

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JP2007510401A
JP2007510401A JP2006534123A JP2006534123A JP2007510401A JP 2007510401 A JP2007510401 A JP 2007510401A JP 2006534123 A JP2006534123 A JP 2006534123A JP 2006534123 A JP2006534123 A JP 2006534123A JP 2007510401 A JP2007510401 A JP 2007510401A
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probe
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base
nucleic acid
target
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JP2007510401A5 (cg-RX-API-DMAC7.html
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イェブジェニー エス. ベロウソフ,
ロバート オー. デンプシー,
セルゲイ ジー. ロクホフ,
アレクセイ ボロビエフ,
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エポック・バイオサイエンシーズ・インコーポレイテッド
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism

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  • Chemical & Material Sciences (AREA)
  • Organic Chemistry (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Microbiology (AREA)
  • Biochemistry (AREA)
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  • Molecular Biology (AREA)
  • Biotechnology (AREA)
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  • Bioinformatics & Cheminformatics (AREA)
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  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Saccharide Compounds (AREA)
JP2006534123A 2003-10-02 2004-09-30 高度に多型の標的配列の一塩基多型分析 Pending JP2007510401A (ja)

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US50879203P 2003-10-02 2003-10-02
PCT/US2004/032265 WO2005035545A2 (en) 2003-10-02 2004-09-30 Single nucleotide polymorphism analysis of highly polymorphic target sequences

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JP2007510401A true JP2007510401A (ja) 2007-04-26
JP2007510401A5 JP2007510401A5 (cg-RX-API-DMAC7.html) 2007-08-09

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US (2) US7348146B2 (cg-RX-API-DMAC7.html)
EP (1) EP1670928A4 (cg-RX-API-DMAC7.html)
JP (1) JP2007510401A (cg-RX-API-DMAC7.html)
AU (1) AU2004279810A1 (cg-RX-API-DMAC7.html)
CA (1) CA2540551A1 (cg-RX-API-DMAC7.html)
WO (1) WO2005035545A2 (cg-RX-API-DMAC7.html)

Cited By (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2007224028A (ja) * 2006-02-20 2007-09-06 F Hoffmann La Roche Ag 改善された標識試薬
JP2016531122A (ja) * 2013-08-08 2016-10-06 ザ スクリップス リサーチ インスティテュートThe Scripps Research Institute 非天然ヌクレオチドの取り込みによるインビトロの核酸の部位特異的な酵素標識のための方法
JP2016533171A (ja) * 2013-10-01 2016-10-27 エピスタム リミテッド 融解温度およびユニバーサル塩基を用いた変異解析
US10610571B2 (en) 2017-08-03 2020-04-07 Synthorx, Inc. Cytokine conjugates for the treatment of proliferative and infectious diseases
US11077195B2 (en) 2019-02-06 2021-08-03 Synthorx, Inc. IL-2 conjugates and methods of use thereof
JP2023503074A (ja) * 2019-11-19 2023-01-26 エスエフシー カンパニー リミテッド 消光子およびこの用途
JP7276571B1 (ja) 2022-06-20 2023-05-18 凸版印刷株式会社 フラップエンドヌクレアーゼの蛍光基質における三重鎖構造の形成効率を向上させる方法
US11834689B2 (en) 2017-07-11 2023-12-05 The Scripps Research Institute Incorporation of unnatural nucleotides and methods thereof

Families Citing this family (27)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7205105B2 (en) * 1999-12-08 2007-04-17 Epoch Biosciences, Inc. Real-time linear detection probes: sensitive 5′-minor groove binder-containing probes for PCR analysis
DK1687609T3 (en) * 2003-10-28 2015-01-12 Epoch Biosciences Inc Fluorescent probes for DNA detection by hybridization with improved sensitivity and low background
US20070048758A1 (en) * 2005-06-09 2007-03-01 Epoch Biosciences, Inc. Improved primer-based amplification methods
WO2007106690A2 (en) 2006-03-15 2007-09-20 Siemens Healthcare Diagnostics Inc. Degenerate nucleobase analogs
US20100129317A1 (en) * 2006-09-11 2010-05-27 Southern Research Institute Azole nucleosides and use as inhibitors of rna and dna viral polymerases
WO2009055039A1 (en) * 2007-10-25 2009-04-30 Canon U.S. Life Sciences, Inc High-resolution melting analysis
US9534255B2 (en) 2008-12-17 2017-01-03 Life Technologies Corporation Methods, compositions, and kits for detecting allelic variants
EP3249053A1 (en) 2009-03-27 2017-11-29 Life Technologies Corporation Methods, compositions, and kits for detecting allelic variants
EP2414361A1 (en) 2009-03-31 2012-02-08 ArQule, Inc. Substituted heterocyclic compounds
CN101659952B (zh) * 2009-07-14 2012-07-18 上海之江生物科技有限公司 锁核酸和小沟结合物共修饰核酸片段
ES2574625T3 (es) * 2009-11-25 2016-06-21 Elitechgroup B.V. Antagonistas de miARN de oligonucleótido conjugado con aglutinante del surco menor (MGB)
US20120214160A1 (en) * 2011-01-14 2012-08-23 Life Technologies Corporation Methods, compositions, and kits for detecting rare cells
US8969003B2 (en) 2011-03-23 2015-03-03 Elitech Holding B.V. Functionalized 3-alkynyl pyrazolopyrimidine analogues as universal bases and methods of use
ES2611343T3 (es) 2011-03-23 2017-05-08 Elitech Holding B.V. Análogos de 3-alquinil pirazolopirimidina funcionalizada como bases universales y métodos de uso
JP2013081448A (ja) * 2011-05-02 2013-05-09 Arkray Inc 遺伝子変異検出用プローブ
EP2714939B1 (en) 2011-05-24 2015-04-15 Elitech Holding B.V. Detection of methicillin-resistant staphylococcus aureus
WO2014160046A1 (en) * 2013-03-14 2014-10-02 The Trustees Of The University Of Pennsylvania A method for detecting mutations in single cells or single molecules
WO2014159063A1 (en) 2013-03-14 2014-10-02 Elitech Holding B.V. Functionalized 3-alkynyl pyrazolopyrimidine analogues as universal bases and methods of use
ES2654631T3 (es) 2013-05-13 2018-02-14 Elitechgroup B.V. PCR digital en gotas con sondas cortas de ranura menor
US10100349B2 (en) * 2013-09-30 2018-10-16 President And Fellows Of Harvard College Methods of determining polymorphisms
EP3230468B1 (en) 2014-12-12 2020-09-16 ELITechGroup, Inc. Methods and kits for detecting antibiotic resistant bacteria
EP3230467A1 (en) 2014-12-12 2017-10-18 ELITechGroup B.V. Methods and compositions for detecting antibiotic resistant bacteria
NO344051B1 (en) * 2017-05-04 2019-08-26 Patogen As Novel virus in Fish and Method for detection
US10677728B2 (en) 2017-08-17 2020-06-09 Elitechgroup B.V. Duplex stabilizing fluorescence quenchers for nucleic acid probes
US11155713B2 (en) 2018-05-29 2021-10-26 Elitechgroup, Inc. Carborhodamine compounds and methods of preparation thereof
JP2024509840A (ja) * 2021-03-12 2024-03-05 ジーティー モレキュラー インコーポレイテッド 蛍光振幅調整を使用する単一プローブによる多重化遺伝子型判定アッセイ
AU2022375767A1 (en) * 2021-10-25 2024-05-02 Gt Molecular, Inc. Off-target blocking sequences to improve target discrimination by polymerase chain reaction

Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002012263A1 (en) * 2000-08-03 2002-02-14 Roche Diagnostics Gmbh Nucleic acid binding compounds containing pyrazolo[3,4-d]pyrimidine analogues of purin-2,6-diamine and their uses
JP2002371095A (ja) * 2001-06-14 2002-12-26 Rikogaku Shinkokai ヌクレオシドホスホロアミダイト化合物
WO2003018838A2 (de) * 2001-08-31 2003-03-06 Clondiag Chip Technologies Gmbh Detektion von wechselwirkungen auf sonden-arrays

Family Cites Families (43)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4458066A (en) * 1980-02-29 1984-07-03 University Patents, Inc. Process for preparing polynucleotides
US4358535A (en) * 1980-12-08 1982-11-09 Board Of Regents Of The University Of Washington Specific DNA probes in diagnostic microbiology
US4711955A (en) * 1981-04-17 1987-12-08 Yale University Modified nucleotides and methods of preparing and using same
FR2540122B1 (fr) * 1983-01-27 1985-11-29 Centre Nat Rech Scient Nouveaux composes comportant une sequence d'oligonucleotide liee a un agent d'intercalation, leur procede de synthese et leur application
US4883750A (en) * 1984-12-13 1989-11-28 Applied Biosystems, Inc. Detection of specific sequences in nucleic acids
US4683202A (en) * 1985-03-28 1987-07-28 Cetus Corporation Process for amplifying nucleic acid sequences
US4683195A (en) * 1986-01-30 1987-07-28 Cetus Corporation Process for amplifying, detecting, and/or-cloning nucleic acid sequences
US4868105A (en) * 1985-12-11 1989-09-19 Chiron Corporation Solution phase nucleic acid sandwich assay
US4800159A (en) * 1986-02-07 1989-01-24 Cetus Corporation Process for amplifying, detecting, and/or cloning nucleic acid sequences
US4868103A (en) * 1986-02-19 1989-09-19 Enzo Biochem, Inc. Analyte detection by means of energy transfer
US5525464A (en) * 1987-04-01 1996-06-11 Hyseq, Inc. Method of sequencing by hybridization of oligonucleotide probes
US5202231A (en) * 1987-04-01 1993-04-13 Drmanac Radoje T Method of sequencing of genomes by hybridization of oligonucleotide probes
US6270961B1 (en) 1987-04-01 2001-08-07 Hyseq, Inc. Methods and apparatus for DNA sequencing and DNA identification
US5124246A (en) * 1987-10-15 1992-06-23 Chiron Corporation Nucleic acid multimers and amplified nucleic acid hybridization assays using same
CA1323293C (en) 1987-12-11 1993-10-19 Keith C. Backman Assay using template-dependent nucleic acid probe reorganization
CA1341584C (en) 1988-04-06 2008-11-18 Bruce Wallace Method of amplifying and detecting nucleic acid sequences
US5849482A (en) 1988-09-28 1998-12-15 Epoch Pharmaceuticals, Inc. Crosslinking oligonucleotides
WO1990003370A1 (en) 1988-09-28 1990-04-05 Microprobe Corporation DERIVATIVES OF PYRAZOLO[3,4-d]PYRIMIDINE
WO1990014353A1 (en) 1989-05-18 1990-11-29 Microprobe Corporation Crosslinking oligonucleotides
US5237101A (en) * 1990-01-26 1993-08-17 The Trustees Of The Univ. Of Penna. Propargylic and allenic sulfones
WO1992000588A1 (fr) 1990-07-02 1992-01-09 Teijin Limited Disque optique
US5210015A (en) * 1990-08-06 1993-05-11 Hoffman-La Roche Inc. Homogeneous assay system using the nuclease activity of a nucleic acid polymerase
US5512667A (en) * 1990-08-28 1996-04-30 Reed; Michael W. Trifunctional intermediates for preparing 3'-tailed oligonucleotides
WO1992020698A1 (en) 1991-05-17 1992-11-26 Uab Research Foundation Sequence specific dna binding drugs
US5419966A (en) * 1991-06-10 1995-05-30 Microprobe Corporation Solid support for synthesis of 3'-tailed oligonucleotides
JPH06509945A (ja) 1991-08-19 1994-11-10 マイクロプローブ・コーポレイション 酵素媒介三本鎖形成のための架橋性オリゴヌクレオチド
US5574142A (en) * 1992-12-15 1996-11-12 Microprobe Corporation Peptide linkers for improved oligonucleotide delivery
WO1994017092A1 (en) 1993-01-26 1994-08-04 Microprobe Corporation Bifunctional crosslinking oligonucleotides adapted for linking to a desired gene sequence of invading organism or cell
US5786138A (en) * 1993-01-29 1998-07-28 Board Of Supervisors Of Louisiana State University And Agricultural And Mechanical College Hyperstabilizing antisense nucleic acid binding agents
US5446137B1 (en) * 1993-12-09 1998-10-06 Behringwerke Ag Oligonucleotides containing 4'-substituted nucleotides
US5646126A (en) * 1994-02-28 1997-07-08 Epoch Pharmaceuticals Sterol modified oligonucleotide duplexes having anticancer activity
DE4408528A1 (de) 1994-03-14 1995-09-28 Hoechst Ag Peptid-Oligonucleotid-Derivate, deren Herstellung und Verwendung
FR2719048B1 (fr) 1994-04-25 1996-07-19 Pasteur Strasbourg I Universit Bases nucléiques polycationiques et oligonucléotides les contenant.
US5556752A (en) * 1994-10-24 1996-09-17 Affymetrix, Inc. Surface-bound, unimolecular, double-stranded DNA
US6312894B1 (en) * 1995-04-03 2001-11-06 Epoch Pharmaceuticals, Inc. Hybridization and mismatch discrimination using oligonucleotides conjugated to minor groove binders
US5801155A (en) * 1995-04-03 1998-09-01 Epoch Pharmaceuticals, Inc. Covalently linked oligonucleotide minor grove binder conjugates
US5912340A (en) 1995-10-04 1999-06-15 Epoch Pharmaceuticals, Inc. Selective binding complementary oligonucleotides
US5659022A (en) * 1996-01-05 1997-08-19 Epoch Pharmaceuticals, Inc. Oligonucleotide-cyclopropapyrroloindole conjugates as sequence specific hybridization and crosslinking agents for nucleic acids
US5776907A (en) * 1996-05-20 1998-07-07 Texas Biotechnology Corporation Mitomycin oligonucleotide conjugates
US5955590A (en) 1996-07-15 1999-09-21 Worcester Foundation For Biomedical Research Conjugates of minor groove DNA binders with antisense oligonucleotides
DE19782089T1 (de) * 1996-10-29 1999-12-23 Univ Nebraska At Lincoln Linco Verfahren zum Nachweisen von Punktmutationen in DNA unter Verwendung von Fluoreszenzenergieübergang
US7205105B2 (en) * 1999-12-08 2007-04-17 Epoch Biosciences, Inc. Real-time linear detection probes: sensitive 5′-minor groove binder-containing probes for PCR analysis
US6579680B2 (en) * 2000-02-28 2003-06-17 Corning Incorporated Method for label-free detection of hybridized DNA targets

Patent Citations (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2002012263A1 (en) * 2000-08-03 2002-02-14 Roche Diagnostics Gmbh Nucleic acid binding compounds containing pyrazolo[3,4-d]pyrimidine analogues of purin-2,6-diamine and their uses
JP2002371095A (ja) * 2001-06-14 2002-12-26 Rikogaku Shinkokai ヌクレオシドホスホロアミダイト化合物
WO2003018838A2 (de) * 2001-08-31 2003-03-06 Clondiag Chip Technologies Gmbh Detektion von wechselwirkungen auf sonden-arrays

Cited By (22)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2007224028A (ja) * 2006-02-20 2007-09-06 F Hoffmann La Roche Ag 改善された標識試薬
JP2016531122A (ja) * 2013-08-08 2016-10-06 ザ スクリップス リサーチ インスティテュートThe Scripps Research Institute 非天然ヌクレオチドの取り込みによるインビトロの核酸の部位特異的な酵素標識のための方法
JP2019196355A (ja) * 2013-08-08 2019-11-14 ザ スクリップス リサーチ インスティテュートThe Scrippsresearch Institute 非天然ヌクレオチドの取り込みによるインビトロの核酸の部位特異的な酵素標識のための方法
US10626138B2 (en) 2013-08-08 2020-04-21 The Scripps Research Institute National Institutes Of Health (Nih), U.S. Dept Of Health And Human Services (Dhhs) Method for the site-specific enzymatic labelling of nucleic acids in vitro by incorporation of unnatural nucleotides
US12281137B2 (en) 2013-08-08 2025-04-22 The Scripps Research Institute Method for the site-specific enzymatic labelling of nucleic acids in vitro by incorporation of unnatural nucleotides
JP7813751B2 (ja) 2013-08-08 2026-02-13 ザ スクリップス リサーチ インスティテュート 非天然ヌクレオチドの取り込みによるインビトロの核酸の部位特異的な酵素標識のための方法
US11634451B2 (en) 2013-08-08 2023-04-25 The Scripps Research Institute Method for the site-specific enzymatic labelling of nucleic acids in vitro by incorporation of unnatural nucleotides
JP2023179406A (ja) * 2013-08-08 2023-12-19 ザ スクリップス リサーチ インスティテュート 非天然ヌクレオチドの取り込みによるインビトロの核酸の部位特異的な酵素標識のための方法
JP2016533171A (ja) * 2013-10-01 2016-10-27 エピスタム リミテッド 融解温度およびユニバーサル塩基を用いた変異解析
US11834689B2 (en) 2017-07-11 2023-12-05 The Scripps Research Institute Incorporation of unnatural nucleotides and methods thereof
US12319944B2 (en) 2017-07-11 2025-06-03 The Scripps Research Institute Incorporation of unnatural nucleotides and methods thereof
US10610571B2 (en) 2017-08-03 2020-04-07 Synthorx, Inc. Cytokine conjugates for the treatment of proliferative and infectious diseases
US11701407B2 (en) 2017-08-03 2023-07-18 Synthorx, Inc. Cytokine conjugates for the treatment of proliferative and infectious diseases
US12377131B2 (en) 2017-08-03 2025-08-05 Synthorx, Inc. Cytokine conjugates for the treatment of autoimmune diseases
US11622993B2 (en) 2017-08-03 2023-04-11 Synthorx, Inc. Cytokine conjugates for the treatment of autoimmune diseases
US12318431B2 (en) 2017-08-03 2025-06-03 Synthorx, Inc. Cytokine conjugates for the treatment of proliferative and infectious diseases
US12521437B2 (en) 2019-02-06 2026-01-13 Synthorx, Inc. IL-2 conjugates and methods of use thereof
US11077195B2 (en) 2019-02-06 2021-08-03 Synthorx, Inc. IL-2 conjugates and methods of use thereof
JP7475445B2 (ja) 2019-11-19 2024-04-26 エスエフシー カンパニー リミテッド 消光子およびこの用途
JP2023503074A (ja) * 2019-11-19 2023-01-26 エスエフシー カンパニー リミテッド 消光子およびこの用途
JP2024000310A (ja) * 2022-06-20 2024-01-05 Toppanホールディングス株式会社 フラップエンドヌクレアーゼの蛍光基質における三重鎖構造の形成効率を向上させる方法
JP7276571B1 (ja) 2022-06-20 2023-05-18 凸版印刷株式会社 フラップエンドヌクレアーゼの蛍光基質における三重鎖構造の形成効率を向上させる方法

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US7348146B2 (en) 2008-03-25
CA2540551A1 (en) 2005-04-21
EP1670928A2 (en) 2006-06-21
US7718374B2 (en) 2010-05-18
US20050118623A1 (en) 2005-06-02
WO2005035545A3 (en) 2005-07-28
US20090087922A1 (en) 2009-04-02
WO2005035545A2 (en) 2005-04-21
AU2004279810A1 (en) 2005-04-21
EP1670928A4 (en) 2008-06-25

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