JP2005257274A - Method and device for detecting interaction of biomolecule using near field light - Google Patents
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Abstract
Description
本発明は、生体分子と検体との、液体中における相互作用を検出する方法および装置に関する。 The present invention relates to a method and apparatus for detecting an interaction between a biomolecule and an analyte in a liquid.
ポストゲノム時代を迎えた今日、タンパク質、糖鎖などの生体分子の機能解明についての研究が盛んに行われている。そして、これらの生体分子と検体との相互作用を検出することは、生体分子の機能解明に重要なことである。特に、癌や糖尿病などの疾患については、タンパク質への糖鎖の付加が関与すると報告されており、糖鎖の付加によるタンパク質の機能解明が重要視されている。そして、タンパク質への糖鎖の付加による生体機能解明には、どのようなタンパク質にどのような糖鎖が付加するのかの糖鎖解析をする必要がある。しかし、糖鎖については、DNAやタンパク質の解析に用いられるシークエンサーや合成機などのデバイスが開発途上にあり、糖鎖の配列決定や試料の増幅を簡易に行えないのが現状である。このため、微量の試料を用いた解析が必要となる。 Today, in the post-genomic era, research on the elucidation of the functions of biomolecules such as proteins and sugar chains has been actively conducted. And detecting the interaction between these biomolecules and the specimen is important for elucidating the functions of the biomolecules. In particular, for diseases such as cancer and diabetes, it has been reported that addition of sugar chains to proteins is involved, and elucidation of protein functions by addition of sugar chains is regarded as important. In order to elucidate biological functions by adding sugar chains to proteins, it is necessary to analyze sugar chains to determine what kind of sugar chains are added to what proteins. However, with regard to sugar chains, devices such as sequencers and synthesizers used for DNA and protein analysis are still under development, and the current situation is that sugar chain sequencing and sample amplification cannot be easily performed. For this reason, analysis using a very small amount of sample is required.
さらに、DNA同士やDNAと検体との相互作用は一般に強いものである一方、タンパク質と検体との相互作用には非常に弱いものがある。例えば、レクチンと糖鎖は、その解離定数が10−6M程度であり、生体内で最も弱い結合であるとされている。このように弱い相互作用を検出するためには、タンパク質および検体の双方が活性を維持しており、且つバインディングフリーでない液体中で測定する必要がある。 Furthermore, while the interaction between DNAs or between DNA and a sample is generally strong, the interaction between proteins and the sample is very weak. For example, a lectin and a sugar chain have a dissociation constant of about 10 −6 M, and are considered to be the weakest bond in vivo. In order to detect such a weak interaction, it is necessary to measure in a liquid in which both the protein and the analyte maintain the activity and are not binding free.
ここで、微量の生体分子と検体との相互作用を検出する方法としては、表面プラズモン共鳴を用いた検出方法が知られている。 Here, a detection method using surface plasmon resonance is known as a method for detecting the interaction between a trace amount of biomolecules and a specimen.
また、微量の生体分子と検体との相互作用を検出する他の方法としては、光の全反射により発生するエバネッセント光を用いるものが知られている(特許文献1参照)。 In addition, as another method for detecting the interaction between a trace amount of biomolecules and a specimen, a method using evanescent light generated by total reflection of light is known (see Patent Document 1).
一方、近接場光顕微鏡(SNOM)プローブを用いた遺伝子解析方法が、知られている(特許文献2参照)。
しかし、上記の表面プラズモン共鳴を用いた方法では、通常分子量の小さい基質を基板に固定しておき、これに分子量の大きいタンパク質等を結合させ、それによる屈折率の変化を捉えることにより、タンパク質等と基質との相互作用を検出している。従って、例えば、分子量の大きなタンパク質を基板に固定しておいて、これに分子量の小さな糖鎖が相互作用したときには、その屈折率の変化が小さく、検出が難しくなるという問題がある。このため、既知の特定のタンパク質と相互作用する糖鎖をスクリーニングする目的には、表面プラズモン共鳴を用いることは難しい。 However, in the method using surface plasmon resonance, a substrate having a low molecular weight is usually fixed on a substrate, a protein having a high molecular weight is bound to the substrate, and a change in the refractive index caused thereby is detected. It detects the interaction between and the substrate. Therefore, for example, when a protein having a large molecular weight is immobilized on a substrate and a sugar chain having a small molecular weight interacts with this, there is a problem that the change in the refractive index is small and the detection becomes difficult. For this reason, it is difficult to use surface plasmon resonance for the purpose of screening for sugar chains that interact with known specific proteins.
また、上記のエバネッセント光を用いた方法は、生体分子を固定した基板の裏側から光を全反射させて基板表面にエバネッセント光を発生させるものであり、その照射範囲は基板上の数100nmの距離にとどまる。このため、生体分子をこの数100nm以内に平らに固定することが必要となるが、これを精密に制御して固定することは容易ではない。さらに、基板上面に水などの液体が存在する場合は、光を全反射させることが難しく、エバネッセント光を発生させにくいという問題がある。 The above-described method using evanescent light is one in which light is totally reflected from the back side of the substrate on which a biomolecule is fixed to generate evanescent light on the surface of the substrate, and its irradiation range is a distance of several hundred nm on the substrate. Stay on. For this reason, it is necessary to fix the biomolecule flat within this several hundred nm, but it is not easy to precisely control and fix this. Further, when a liquid such as water is present on the upper surface of the substrate, there is a problem that it is difficult to totally reflect light and it is difficult to generate evanescent light.
さらに、上記のSNOMプローブを用いた遺伝子解析方法は、上述のように強い相互作用を示すDNA鎖を対象として、遺伝子地図を解析するために用いられるものであり、タンパク質等による弱い相互作用を検出するものではない。 Furthermore, the gene analysis method using the SNOM probe described above is used for analyzing a genetic map for a DNA strand exhibiting a strong interaction as described above, and detects weak interactions due to proteins or the like. Not what you want.
本発明の課題は、生体分子と検体との弱い相互作用を検出することができる方法および装置を提供することにある。 An object of the present invention is to provide a method and apparatus capable of detecting a weak interaction between a biomolecule and an analyte.
本発明は、基板に固定した生体分子と、蛍光標識した検体との相互作用を、近接場光を用いて検出する方法であって、液体中において前記生体分子と前記検体とを接触させる工程と、液体中において前記生体分子表面にSNOMプローブを用いて近接場光を照射する工程と、前記近接場光により励起された蛍光を検出する工程と、を含むことを特徴とする、前記方法である。
また、本発明は、生体分子が、タンパク質および/または糖鎖である、上記の方法である。
さらに、本発明は、検体が、タンパク質および/または糖鎖である、上記の方法である。
これらの発明により、生体分子と検体との弱い相互作用を検出することが可能となる。
The present invention is a method for detecting the interaction between a biomolecule immobilized on a substrate and a fluorescently labeled specimen using near-field light, the method comprising contacting the biomolecule and the specimen in a liquid; The method includes the steps of: irradiating the surface of the biomolecule with a near-field light in a liquid using a SNOM probe; and detecting fluorescence excited by the near-field light. .
The present invention is also the above method, wherein the biomolecule is a protein and / or a sugar chain.
Furthermore, the present invention is the above method, wherein the specimen is a protein and / or sugar chain.
According to these inventions, it is possible to detect a weak interaction between a biomolecule and a specimen.
また、本発明は、1種または2種以上の生体分子を固定した基板を用いることを特徴とする、上記の方法である。
この発明により、一つの基板において複数の生体分子について、検体との相互作用を検出することが可能となる。
In addition, the present invention is the method described above, wherein a substrate on which one or more biomolecules are immobilized is used.
According to the present invention, it is possible to detect an interaction with a specimen for a plurality of biomolecules on one substrate.
さらに、本発明は、基板に固定した生体分子と、蛍光標識した検体との相互作用を、近接場光を用いて検出する装置であって、前記検体と液体中において接触した前記生体分子の表面に、近接場光を照射する照射手段と、前記近接場光により励起された蛍光を検出する検出手段と、を備えることを特徴とする、前記装置である。
また、本発明は、前記生体分子が、タンパク質および/または糖鎖である、上記の装置である。
さらに、本発明は、前記検体が、タンパク質および/または糖鎖である、上記の装置である。
これらの発明により、生体分子と検体との弱い相互作用を検出することが可能となる。
Furthermore, the present invention is an apparatus for detecting the interaction between a biomolecule immobilized on a substrate and a fluorescently labeled specimen using near-field light, and the surface of the biomolecule in contact with the specimen in a liquid In addition, the apparatus includes: an irradiation unit that irradiates near-field light; and a detection unit that detects fluorescence excited by the near-field light.
The present invention is also the above device, wherein the biomolecule is a protein and / or a sugar chain.
Furthermore, the present invention is the above apparatus, wherein the specimen is a protein and / or a sugar chain.
According to these inventions, it is possible to detect a weak interaction between a biomolecule and a specimen.
また、本発明は、1種または2種以上の生体分子を固定した基板を用いることを特徴とする、上記の装置である。
この発明により、一つの基板において複数の生体分子について、検体との相互作用を検出することが可能となる。
In addition, the present invention is the apparatus described above, wherein a substrate on which one or more types of biomolecules are fixed is used.
According to the present invention, it is possible to detect an interaction with a specimen for a plurality of biomolecules on one substrate.
本発明により、生体分子と検体との弱い相互作用を検出することが可能となる。また、本発明により、一つの基板において複数の生体分子について、検体との相互作用を検出することが可能となる。 According to the present invention, it is possible to detect a weak interaction between a biomolecule and a specimen. In addition, according to the present invention, it is possible to detect an interaction with a specimen for a plurality of biomolecules on one substrate.
以下、本発明の実施の形態について、図面を参照して説明する。
図1は、本発明の検出方法および検出装置を模式的に示す図である。
図1において、生体分子5は、基板1に固定されている。この基板1は、蛍光標識12により標識された検体10を含む液体8の中におかれている。これにより生体分子5と検体10とが接触することとなる。そして、SNOMプローブ20の先端に近接場光30を発生させ、SNOMプローブ20によりAFMモードで基板表面(生体分子表面)を走査する(図1(a))。検体10と生体分子5が相互作用している箇所にSNOMプローブが到達すると、蛍光標識12が近接場光30により励起され、蛍光40が発生することとなる(図1(b))。この発生した蛍光40を検出することにより、生体分子5と検体10との相互作用を検出することが可能となる。なお、ここでSNOMプローブは、本発明の近接場光を照射する照射手段を構成する。
Embodiments of the present invention will be described below with reference to the drawings.
FIG. 1 is a diagram schematically showing a detection method and a detection apparatus of the present invention.
In FIG. 1, the
このとき、生体分子5と相互作用していない検体については、近接場光30が照射されないため、蛍光を発生することがなく、目的の生体分子5と相互作用している検体のみを検出することが可能となる。
At this time, the specimen that does not interact with the
発生した蛍光を検出する手段としては、蛍光を検出できるものであれば特に制限はないが、例えば、光センサを基板1の上部若しくは基板1の裏側に設置することにより、蛍光を検出するものを用いることができる。 The means for detecting the generated fluorescence is not particularly limited as long as it can detect fluorescence. For example, a means for detecting fluorescence by installing an optical sensor on the top of the substrate 1 or on the back side of the substrate 1 can be used. Can be used.
また、蛍光を検出する他の手段としては、例えば、図2に示すように、SNOMプローブにより、蛍光を検出するものでもよい。即ち、図2において、レーザ発生器50で発生したレーザ光52は、ダイクロイックミラー55を介してSNOMプローブ20に入射し、その先端部分で図示しない近接場光が発生する。この近接場光が検体10を標識した蛍光標識12に照射され、蛍光40が発生する。発生した蛍光40の一部は、SNOMプローブ20、ダイクロイックミラー55を介して、光センサ60に到達し、蛍光が検出される。
Further, as another means for detecting fluorescence, for example, as shown in FIG. 2, fluorescence may be detected by an SNOM probe. That is, in FIG. 2, the
なお、本発明の検出装置において、液体中で各々の処理を行うための液体貯留手段をさらに備えてもよい。 Note that the detection apparatus of the present invention may further include liquid storage means for performing each processing in the liquid.
本発明に用いる生体分子としては、検体と相互作用するものであれば特に制限はないが、例えば、タンパク質、糖鎖等を挙げることができる。また、本発明に用いる検体としては、生体分子と相互作用するものであれば特に制限はないが、例えば、糖鎖、タンパク質等を挙げることができる。さらに、生体分子と検体との組み合わせの具体例としては、例えば、レクチンと糖鎖等を挙げることができる。これらのレクチンと糖鎖との結合は非常に弱いことが知られており、このような弱い相互作用も、本発明によって検出することが可能となる。 The biomolecule used in the present invention is not particularly limited as long as it interacts with a specimen, and examples thereof include proteins and sugar chains. The specimen used in the present invention is not particularly limited as long as it interacts with a biomolecule, and examples thereof include sugar chains and proteins. Furthermore, specific examples of combinations of biomolecules and specimens include lectins and sugar chains, for example. It is known that the binding between these lectins and sugar chains is very weak, and such a weak interaction can be detected by the present invention.
本発明に用いられる、検体への蛍光標識としては、蛍光を発生するものであれば特に制限はないが、例えば、GFP(Green Fluorescence Protein)やカルシウム指示タンパク質試薬(cameleon)などの蛍光タンパク質を挙げることができる。 The fluorescent label used for the present invention is not particularly limited as long as it generates fluorescence, and examples thereof include fluorescent proteins such as GFP (Green Fluorescence Protein) and calcium indicator protein reagent (cameleon). be able to.
本発明に用いられる基板としては、生体分子を固定できるものであれば特に制限はないが、例えば、ニトロセルロース膜、PVDE膜、金属、ガラスなどから成るものを挙げることができる。特に、ガラス等の透明の材料を用いた場合には、基板の裏面から蛍光を検出することが可能となる。 The substrate used in the present invention is not particularly limited as long as it can fix a biomolecule, and examples thereof include a substrate made of a nitrocellulose film, a PVDE film, a metal, glass or the like. In particular, when a transparent material such as glass is used, fluorescence can be detected from the back surface of the substrate.
基板に生体分子を固定する方法としては、基板に生体分子を固定できるものであれば特に制限はないが、例えば、アミノ結合させる方法、物理的吸着をさせる方法、チオール結合させる方法、抗原抗体反応をさせる方法等を挙げることができる。 The method for immobilizing the biomolecule on the substrate is not particularly limited as long as it can immobilize the biomolecule on the substrate. For example, amino bonding method, physical adsorption method, thiol bonding method, antigen-antibody reaction The method etc. which are made can be mentioned.
本発明に用いられる液体としては、生体分子と検体との相互作用を検出できるものであれば特に制限はないが、例えば、緩衝液等を挙げることができる。緩衝液を用いることにより、生体分子および検体の活性を失うことなく、これらの相互作用を検出することが可能となる。 The liquid used in the present invention is not particularly limited as long as it can detect the interaction between the biomolecule and the specimen, and examples thereof include a buffer solution. By using a buffer solution, it is possible to detect these interactions without losing the activity of the biomolecule and the analyte.
本発明における生体分子と検体とを接触させる方法としては、生体分子と検体が接触できるものであれば特に制限はないが、例えば、検体を含む液体中に、生体分子を固定した基板を浸漬する方法を挙げることができる。これにより、検体が生体分子と接触し、相互作用が比較的強い場合は、より多くの検体が生体分子に吸着または結合することとなる。また、これらの相互作用が比較的弱い場合は、より少ない検体が生体分子に吸着または結合することとなる。 The method for bringing the biomolecule and the specimen into contact in the present invention is not particularly limited as long as the biomolecule and the specimen can be brought into contact with each other. For example, a substrate on which the biomolecule is fixed is immersed in a liquid containing the specimen. A method can be mentioned. As a result, when the specimen comes into contact with the biomolecule and the interaction is relatively strong, more specimen is adsorbed or bound to the biomolecule. In addition, when these interactions are relatively weak, fewer analytes are adsorbed or bound to biomolecules.
本発明に用いられるSNOMプローブとしては、近接場光を発生させることができるものであれば特に制限はない。SNOMプローブ先端では、半径約数10nmの範囲において近接場光を発生させることができ、標的とする生体分子付近の微小領域のみにおいて、検体との相互作用を検出することが可能となる。 The SNOM probe used in the present invention is not particularly limited as long as it can generate near-field light. At the tip of the SNOM probe, near-field light can be generated within a radius of about several tens of nanometers, and the interaction with the specimen can be detected only in a minute region near the target biomolecule.
この場合、生体分子を固定したスポットについて、SNOMプローブを走査させて、検出することが好ましい。なお、生体分子を基板に平坦に固定することは容易ではないため、SNOMプローブを走査させる方法としては、AFMモードによることが好ましい。AFMモードによれば、基板に固定した生体分子のスポットが平坦でない場合でも、その凹凸に応じて、SNOMプローブと、生体分子または検体とを等距離に保つことができ、精度よく検体と生体分子との相互作用を検出することが可能となる。 In this case, it is preferable to detect the spot on which the biomolecule is fixed by scanning the SNOM probe. In addition, since it is not easy to fix a biomolecule to a board | substrate flatly, it is preferable to use the AFM mode as a method of scanning a SNOM probe. According to the AFM mode, even when the spot of the biomolecule fixed on the substrate is not flat, the SNOM probe and the biomolecule or the specimen can be kept equidistant according to the unevenness, and the specimen and the biomolecule can be accurately maintained. It becomes possible to detect the interaction.
本発明に用いられる生体分子を固定した基板としては、1種類の生体分子を固定したもののほか、例えば、図3に示すような、2種以上の生体分子を固定したものを挙げることができる。即ち、図3において、複数の生体分子5は、各々異なる種類のものが基板1に固定されている。この基板1を、検体を含む液体中に浸漬し、SNOMプローブを走査させることにより、各々のスポットの生体分子について、検体との相互作用を検出することが可能となる。これによって、1つの検体について、複数種類の生体分子との相互作用を1つの基板を用いることにより、検出することが可能となる。
Examples of the substrate on which the biomolecules used in the present invention are fixed include those in which two or more types of biomolecules are fixed as shown in FIG. 3 in addition to those in which one type of biomolecule is fixed. That is, in FIG. 3, different types of the plurality of
1 基板
5 生体分子
8 液体
10 検体
12 蛍光標識
20 SNOMプローブ
30 近接場光
40 蛍光
50 レーザ発生器
52 レーザ光
55 ダイクロイックミラー
60 光センサ
DESCRIPTION OF SYMBOLS 1
Claims (8)
液体中において前記生体分子と前記検体とを接触させる工程と、
液体中において前記生体分子表面にSNOMプローブを用いて近接場光を照射する工程と、
前記近接場光により励起された蛍光を検出する工程と、
を含むことを特徴とする、前記方法。 A method for detecting the interaction between a biomolecule immobilized on a substrate and a fluorescently labeled specimen using near-field light,
Contacting the biomolecule with the analyte in a liquid;
Irradiating near-field light on the surface of the biomolecule in a liquid using a SNOM probe;
Detecting fluorescence excited by the near-field light;
The method comprising the steps of:
前記検体と液体中において接触した前記生体分子の表面に、近接場光を照射する照射手段と、
前記近接場光により励起された蛍光を検出する検出手段と、
を備えることを特徴とする、前記装置。 An apparatus for detecting the interaction between a biomolecule immobilized on a substrate and a fluorescently labeled specimen using near-field light,
An irradiation means for irradiating the surface of the biomolecule in contact with the specimen in a liquid with near-field light;
Detecting means for detecting fluorescence excited by the near-field light;
The apparatus comprising:
The apparatus according to any one of claims 5 to 7, wherein a substrate on which one kind or two or more kinds of biomolecules are fixed is used.
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