JP2004537770A - 表現型形質を制御する染色体領域を予測するシステムおよび方法 - Google Patents

表現型形質を制御する染色体領域を予測するシステムおよび方法 Download PDF

Info

Publication number
JP2004537770A
JP2004537770A JP2002550101A JP2002550101A JP2004537770A JP 2004537770 A JP2004537770 A JP 2004537770A JP 2002550101 A JP2002550101 A JP 2002550101A JP 2002550101 A JP2002550101 A JP 2002550101A JP 2004537770 A JP2004537770 A JP 2004537770A
Authority
JP
Japan
Prior art keywords
data structure
organism
genotype
phenotype
locus
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
JP2002550101A
Other languages
English (en)
Japanese (ja)
Inventor
ウスカ，ジョナサン，エー．
グラプ，アンドリュー
ペルツ，ゲイリー，アレン
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
F Hoffmann La Roche AG
Original Assignee
F Hoffmann La Roche AG
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by F Hoffmann La Roche AG filed Critical F Hoffmann La Roche AG
Publication of JP2004537770A publication Critical patent/JP2004537770A/ja
Pending legal-status Critical Current

Links

Images

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

Landscapes

  • Bioinformatics & Cheminformatics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Analytical Chemistry (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
JP2002550101A 2000-12-15 2001-12-14 表現型形質を制御する染色体領域を予測するシステムおよび方法 Pending JP2004537770A (ja)

Applications Claiming Priority (2)

Application Number Priority Date Filing Date Title
US09/737,918 US20020119451A1 (en) 2000-12-15 2000-12-15 System and method for predicting chromosomal regions that control phenotypic traits
PCT/US2001/048524 WO2002048387A2 (en) 2000-12-15 2001-12-14 System and method for predicting chromosomal regions that control phenotypic traits

Related Child Applications (1)

Application Number Title Priority Date Filing Date
JP2007075166A Division JP2007220132A (ja) 2000-12-15 2007-03-22 表現型形質を制御する染色体領域を予測するシステムおよび方法

Publications (1)

Publication Number Publication Date
JP2004537770A true JP2004537770A (ja) 2004-12-16

Family

ID=24965801

Family Applications (2)

Application Number Title Priority Date Filing Date
JP2002550101A Pending JP2004537770A (ja) 2000-12-15 2001-12-14 表現型形質を制御する染色体領域を予測するシステムおよび方法
JP2007075166A Ceased JP2007220132A (ja) 2000-12-15 2007-03-22 表現型形質を制御する染色体領域を予測するシステムおよび方法

Family Applications After (1)

Application Number Title Priority Date Filing Date
JP2007075166A Ceased JP2007220132A (ja) 2000-12-15 2007-03-22 表現型形質を制御する染色体領域を予測するシステムおよび方法

Country Status (5)

Country Link
US (2) US20020119451A1 (enExample)
EP (1) EP1344177A4 (enExample)
JP (2) JP2004537770A (enExample)
CA (1) CA2432757A1 (enExample)
WO (1) WO2002048387A2 (enExample)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020119451A1 (en) * 2000-12-15 2002-08-29 Usuka Jonathan A. System and method for predicting chromosomal regions that control phenotypic traits
US20030101000A1 (en) * 2001-07-24 2003-05-29 Bader Joel S. Family based tests of association using pooled DNA and SNP markers
US20060188875A1 (en) * 2001-09-18 2006-08-24 Perlegen Sciences, Inc. Human genomic polymorphisms
WO2004025258A2 (en) * 2002-09-10 2004-03-25 Sydney Kimmel Cancer Center Gene segregation and biological sample classification methods
BR0317329A (pt) * 2002-12-31 2005-11-08 Mmi Genomics Inc Composições, métodos e sistemas para inferir traços bovinos
US20040146870A1 (en) * 2003-01-27 2004-07-29 Guochun Liao Systems and methods for predicting specific genetic loci that affect phenotypic traits
US8460243B2 (en) 2003-06-10 2013-06-11 Abbott Diabetes Care Inc. Glucose measuring module and insulin pump combination
US7722536B2 (en) 2003-07-15 2010-05-25 Abbott Diabetes Care Inc. Glucose measuring device integrated into a holster for a personal area network device
US20050153317A1 (en) * 2003-10-24 2005-07-14 Metamorphix, Inc. Methods and systems for inferring traits to breed and manage non-beef livestock
EP1810185A4 (en) 2004-06-04 2010-01-06 Therasense Inc DIABETES SUPPLY HOST CLIENT ARCHITECTURE AND DATA MANAGEMENT SYSTEM
US20080163824A1 (en) * 2006-09-01 2008-07-10 Innovative Dairy Products Pty Ltd, An Australian Company, Acn 098 382 784 Whole genome based genetic evaluation and selection process
US10136845B2 (en) 2011-02-28 2018-11-27 Abbott Diabetes Care Inc. Devices, systems, and methods associated with analyte monitoring devices and devices incorporating the same
US8718950B2 (en) 2011-07-08 2014-05-06 The Medical College Of Wisconsin, Inc. Methods and apparatus for identification of disease associated mutations
CN103245560A (zh) * 2013-04-17 2013-08-14 三峡大学 基于LabView的土固结和剪切试验数据采集系统
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
CA3014292A1 (en) 2016-02-12 2017-08-17 Regeneron Pharmaceuticals, Inc. Methods and systems for detection of abnormal karyotypes
US12033724B2 (en) 2016-05-12 2024-07-09 Pioneer Hi-Bred International, Inc. Methods for simultaneous pooled genotyping
WO2017210456A1 (en) * 2016-06-01 2017-12-07 Lineagen, Inc. Systems, devices and methods for improved analysis and storage of genotypic and phenotypic data
US11574707B2 (en) * 2017-04-04 2023-02-07 Iqvia Inc. System and method for phenotype vector manipulation of medical data

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5492547B1 (en) * 1993-09-14 1998-06-30 Dekalb Genetics Corp Process for predicting the phenotypic trait of yield in maize
US5581657A (en) * 1994-07-29 1996-12-03 Zerox Corporation System for integrating multiple genetic algorithm applications
CA2258547A1 (en) * 1996-06-17 1997-12-24 Microcide Pharmaceuticals, Inc. Screening methods using microbial strain pools
US6123451A (en) * 1997-03-17 2000-09-26 Her Majesty The Queen In Right Of Canada, As Represented By The Administer For The Department Of Agiculture And Agri-Food (Afcc) Process for determining a tissue composition characteristic of an animal
US6132724A (en) * 1998-04-29 2000-10-17 City Of Hope National Medical Center Allelic polygene diagnosis of reward deficiency syndrome and treatment
DK1129216T3 (da) * 1998-11-10 2005-01-17 Genset Sa Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab
US20020119451A1 (en) * 2000-12-15 2002-08-29 Usuka Jonathan A. System and method for predicting chromosomal regions that control phenotypic traits
US7585299B2 (en) 2006-02-17 2009-09-08 Warsaw Orthopedic, Inc. Dorsal adjusting spinal connector assembly

Also Published As

Publication number Publication date
WO2002048387A3 (en) 2003-01-09
US20020137080A1 (en) 2002-09-26
WO2002048387A2 (en) 2002-06-20
EP1344177A4 (en) 2006-10-25
CA2432757A1 (en) 2002-06-20
EP1344177A2 (en) 2003-09-17
US20020119451A1 (en) 2002-08-29
US7698117B2 (en) 2010-04-13
JP2007220132A (ja) 2007-08-30

Similar Documents

Publication Publication Date Title
JP2007220132A (ja) 表現型形質を制御する染色体領域を予測するシステムおよび方法
Mackay Genetic variation in varying environments
Jacob et al. Rat genetics: attachign physiology and pharmacology to the genome
Druet et al. Toward genomic prediction from whole-genome sequence data: impact of sequencing design on genotype imputation and accuracy of predictions
Flint et al. Genome-wide association studies in mice
Malaria Genomic Epidemiology Network Writing group Band Gavin 1 Rockett Kirk A. 1 2 Spencer Chris CA chris. spencer@ well. ox. ac. uk 1 d Kwiatkowski Dominic P. dominic@ sanger. ac. uk 1 2 e et al. A novel locus of resistance to severe malaria in a region of ancient balancing selection
US–Venezuela Collaborative Research Project* et al. Venezuelan kindreds reveal that genetic and environmental factors modulate Huntington's disease age of onset
Hadly et al. Genetic response to climatic change: insights from ancient DNA and phylochronology
Garza et al. Social structure of the mound‐building mouse Mus spicilegus revealed by genetic analysis with microsatellites
Parker et al. High-resolution genetic mapping of complex traits from a combined analysis of F2 and advanced intercross mice
Gayán et al. Genomewide linkage scan reveals novel loci modifying age of onset of Huntington's disease in the Venezuelan HD kindreds
Wooldridge et al. An enhancer of Agouti contributes to parallel evolution of cryptically colored beach mice
Hoefen et al. In silico cardiac risk assessment in patients with long QT syndrome: type 1: clinical predictability of cardiac models
Lavanchy et al. Effect of reduced genomic representation on using runs of homozygosity for inbreeding characterization
CN113066586A (zh) 一种基于多基因风险打分构建疾病分类模型的方法
Beraldi et al. Mapping quantitative trait loci underlying fitness-related traits in a free-living sheep population
Lin et al. Sequencing drug response with HapMap
Howard et al. Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
Dumont et al. Into the Wild: A novel wild-derived inbred strain resource expands the genomic and phenotypic diversity of laboratory mouse models
Gauderman et al. Longitudinal data analysis in pedigree studies
Jasinska et al. A genetic linkage map of the vervet monkey (Chlorocebus aethiops sabaeus)
Leme et al. A survey of airway responsiveness in 36 inbred mouse strains facilitates gene mapping studies and identification of quantitative trait loci
Flint et al. Little epistasis for anxiety-related measures in the DeFries strains of laboratory mice
Moisan From QTL detection to gene identification
Gomez-Raya et al. Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations

Legal Events

Date Code Title Description
A621 Written request for application examination

Free format text: JAPANESE INTERMEDIATE CODE: A621

Effective date: 20041110

A131 Notification of reasons for refusal

Free format text: JAPANESE INTERMEDIATE CODE: A131

Effective date: 20060307

A601 Written request for extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A601

Effective date: 20060601

A602 Written permission of extension of time

Free format text: JAPANESE INTERMEDIATE CODE: A602

Effective date: 20060822

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20060907

A02 Decision of refusal

Free format text: JAPANESE INTERMEDIATE CODE: A02

Effective date: 20061121

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A523

Effective date: 20070322

A911 Transfer to examiner for re-examination before appeal (zenchi)

Free format text: JAPANESE INTERMEDIATE CODE: A911

Effective date: 20070522

A912 Re-examination (zenchi) completed and case transferred to appeal board

Free format text: JAPANESE INTERMEDIATE CODE: A912

Effective date: 20070615

A711 Notification of change in applicant

Free format text: JAPANESE INTERMEDIATE CODE: A711

Effective date: 20101102

A521 Request for written amendment filed

Free format text: JAPANESE INTERMEDIATE CODE: A821

Effective date: 20101102