CA2432757A1 - System and method for predicting chromosomal regions that control phenotypic traits - Google Patents

System and method for predicting chromosomal regions that control phenotypic traits Download PDF

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Publication number
CA2432757A1
CA2432757A1 CA002432757A CA2432757A CA2432757A1 CA 2432757 A1 CA2432757 A1 CA 2432757A1 CA 002432757 A CA002432757 A CA 002432757A CA 2432757 A CA2432757 A CA 2432757A CA 2432757 A1 CA2432757 A1 CA 2432757A1
Authority
CA
Canada
Prior art keywords
data structure
genotypic
organism
strains
locus
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002432757A
Other languages
English (en)
French (fr)
Inventor
Jonathan A. Usuka
Andrew Grupe
Gary Allen Peltz
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
F Hoffmann La Roche AG
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2432757A1 publication Critical patent/CA2432757A1/en
Abandoned legal-status Critical Current

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Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes

Landscapes

  • Bioinformatics & Cheminformatics (AREA)
  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Analytical Chemistry (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Theoretical Computer Science (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
CA002432757A 2000-12-15 2001-12-14 System and method for predicting chromosomal regions that control phenotypic traits Abandoned CA2432757A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/737,918 US20020119451A1 (en) 2000-12-15 2000-12-15 System and method for predicting chromosomal regions that control phenotypic traits
US09/737,918 2000-12-15
PCT/US2001/048524 WO2002048387A2 (en) 2000-12-15 2001-12-14 System and method for predicting chromosomal regions that control phenotypic traits

Publications (1)

Publication Number Publication Date
CA2432757A1 true CA2432757A1 (en) 2002-06-20

Family

ID=24965801

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002432757A Abandoned CA2432757A1 (en) 2000-12-15 2001-12-14 System and method for predicting chromosomal regions that control phenotypic traits

Country Status (5)

Country Link
US (2) US20020119451A1 (enExample)
EP (1) EP1344177A4 (enExample)
JP (2) JP2004537770A (enExample)
CA (1) CA2432757A1 (enExample)
WO (1) WO2002048387A2 (enExample)

Families Citing this family (19)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20020119451A1 (en) * 2000-12-15 2002-08-29 Usuka Jonathan A. System and method for predicting chromosomal regions that control phenotypic traits
US20030101000A1 (en) * 2001-07-24 2003-05-29 Bader Joel S. Family based tests of association using pooled DNA and SNP markers
US20060188875A1 (en) * 2001-09-18 2006-08-24 Perlegen Sciences, Inc. Human genomic polymorphisms
WO2004025258A2 (en) * 2002-09-10 2004-03-25 Sydney Kimmel Cancer Center Gene segregation and biological sample classification methods
BR0317329A (pt) * 2002-12-31 2005-11-08 Mmi Genomics Inc Composições, métodos e sistemas para inferir traços bovinos
US20040146870A1 (en) * 2003-01-27 2004-07-29 Guochun Liao Systems and methods for predicting specific genetic loci that affect phenotypic traits
US8460243B2 (en) 2003-06-10 2013-06-11 Abbott Diabetes Care Inc. Glucose measuring module and insulin pump combination
US7722536B2 (en) 2003-07-15 2010-05-25 Abbott Diabetes Care Inc. Glucose measuring device integrated into a holster for a personal area network device
US20050153317A1 (en) * 2003-10-24 2005-07-14 Metamorphix, Inc. Methods and systems for inferring traits to breed and manage non-beef livestock
EP1810185A4 (en) 2004-06-04 2010-01-06 Therasense Inc DIABETES SUPPLY HOST CLIENT ARCHITECTURE AND DATA MANAGEMENT SYSTEM
US20080163824A1 (en) * 2006-09-01 2008-07-10 Innovative Dairy Products Pty Ltd, An Australian Company, Acn 098 382 784 Whole genome based genetic evaluation and selection process
US10136845B2 (en) 2011-02-28 2018-11-27 Abbott Diabetes Care Inc. Devices, systems, and methods associated with analyte monitoring devices and devices incorporating the same
US8718950B2 (en) 2011-07-08 2014-05-06 The Medical College Of Wisconsin, Inc. Methods and apparatus for identification of disease associated mutations
CN103245560A (zh) * 2013-04-17 2013-08-14 三峡大学 基于LabView的土固结和剪切试验数据采集系统
US10395759B2 (en) 2015-05-18 2019-08-27 Regeneron Pharmaceuticals, Inc. Methods and systems for copy number variant detection
CA3014292A1 (en) 2016-02-12 2017-08-17 Regeneron Pharmaceuticals, Inc. Methods and systems for detection of abnormal karyotypes
US12033724B2 (en) 2016-05-12 2024-07-09 Pioneer Hi-Bred International, Inc. Methods for simultaneous pooled genotyping
WO2017210456A1 (en) * 2016-06-01 2017-12-07 Lineagen, Inc. Systems, devices and methods for improved analysis and storage of genotypic and phenotypic data
US11574707B2 (en) * 2017-04-04 2023-02-07 Iqvia Inc. System and method for phenotype vector manipulation of medical data

Family Cites Families (8)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5492547B1 (en) * 1993-09-14 1998-06-30 Dekalb Genetics Corp Process for predicting the phenotypic trait of yield in maize
US5581657A (en) * 1994-07-29 1996-12-03 Zerox Corporation System for integrating multiple genetic algorithm applications
CA2258547A1 (en) * 1996-06-17 1997-12-24 Microcide Pharmaceuticals, Inc. Screening methods using microbial strain pools
US6123451A (en) * 1997-03-17 2000-09-26 Her Majesty The Queen In Right Of Canada, As Represented By The Administer For The Department Of Agiculture And Agri-Food (Afcc) Process for determining a tissue composition characteristic of an animal
US6132724A (en) * 1998-04-29 2000-10-17 City Of Hope National Medical Center Allelic polygene diagnosis of reward deficiency syndrome and treatment
DK1129216T3 (da) * 1998-11-10 2005-01-17 Genset Sa Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab
US20020119451A1 (en) * 2000-12-15 2002-08-29 Usuka Jonathan A. System and method for predicting chromosomal regions that control phenotypic traits
US7585299B2 (en) 2006-02-17 2009-09-08 Warsaw Orthopedic, Inc. Dorsal adjusting spinal connector assembly

Also Published As

Publication number Publication date
WO2002048387A3 (en) 2003-01-09
US20020137080A1 (en) 2002-09-26
JP2004537770A (ja) 2004-12-16
WO2002048387A2 (en) 2002-06-20
EP1344177A4 (en) 2006-10-25
EP1344177A2 (en) 2003-09-17
US20020119451A1 (en) 2002-08-29
US7698117B2 (en) 2010-04-13
JP2007220132A (ja) 2007-08-30

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Legal Events

Date Code Title Description
EEER Examination request
FZDE Discontinued

Effective date: 20121214

FZDE Discontinued

Effective date: 20121214