DK1129216T3 - Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab - Google Patents

Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab

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Publication number
DK1129216T3
DK1129216T3 DK99954287T DK99954287T DK1129216T3 DK 1129216 T3 DK1129216 T3 DK 1129216T3 DK 99954287 T DK99954287 T DK 99954287T DK 99954287 T DK99954287 T DK 99954287T DK 1129216 T3 DK1129216 T3 DK 1129216T3
Authority
DK
Denmark
Prior art keywords
software
gene associated
trait
association values
distribution
Prior art date
Application number
DK99954287T
Other languages
English (en)
Inventor
Marta Blumenfeld
J Nicholas Schork
Laurent Essioux
Annick Cohen-Akenine
Daniel Cohen
Original Assignee
Genset Sa
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Genset Sa filed Critical Genset Sa
Application granted granted Critical
Publication of DK1129216T3 publication Critical patent/DK1129216T3/da

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Classifications

    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
    • G16B20/40—Population genetics; Linkage disequilibrium
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/20—Sequence assembly
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
DK99954287T 1998-11-10 1999-11-10 Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab DK1129216T3 (da)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US10798698P 1998-11-10 1998-11-10
US14078599P 1999-06-23 1999-06-23
EP99954287A EP1129216B1 (en) 1998-11-10 1999-11-10 Methods, software and apparati for identifying genomic regions harboring a gene associated with a detectable trait

Publications (1)

Publication Number Publication Date
DK1129216T3 true DK1129216T3 (da) 2005-01-17

Family

ID=26805417

Family Applications (1)

Application Number Title Priority Date Filing Date
DK99954287T DK1129216T3 (da) 1998-11-10 1999-11-10 Fremgangsmåder, software og apparater til identificering af genomiske regioner, der huser et gen associeret med en påviselig egenskab

Country Status (11)

Country Link
US (3) US6291182B1 (da)
EP (1) EP1129216B1 (da)
JP (1) JP2002529718A (da)
AT (1) ATE275639T1 (da)
AU (1) AU771187B2 (da)
CA (1) CA2348609A1 (da)
DE (1) DE69920032T2 (da)
DK (1) DK1129216T3 (da)
ES (1) ES2229781T3 (da)
PT (1) PT1129216E (da)
WO (1) WO2000028080A2 (da)

Families Citing this family (54)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
ATE483821T1 (de) * 1998-02-26 2010-10-15 Ralph Evan Mcginnis Techniken zur zweidimensionalen abhängigkeitsanalyse
US20020090639A1 (en) * 1998-02-26 2002-07-11 Mcginnis Ralph Evan Two dimensional linkage study methods and related inventions
JP2002529718A (ja) * 1998-11-10 2002-09-10 ジェンセット 検出可能な形質と結合された遺伝子を含むゲノム領域を同定するための方法、ソフトウエアおよび装置
US7062076B1 (en) 1999-08-27 2006-06-13 Iris Biotechnologies, Inc. Artificial intelligence system for genetic analysis
US7054755B2 (en) * 2000-10-12 2006-05-30 Iconix Pharmaceuticals, Inc. Interactive correlation of compound information and genomic information
US20050060102A1 (en) * 2000-10-12 2005-03-17 O'reilly David J. Interactive correlation of compound information and genomic information
US20020119451A1 (en) * 2000-12-15 2002-08-29 Usuka Jonathan A. System and method for predicting chromosomal regions that control phenotypic traits
GB0103295D0 (en) * 2001-02-09 2001-03-28 Isis Innovation Method and system for haplotype reconstruction
AU785425B2 (en) * 2001-03-30 2007-05-17 Genetic Technologies Limited Methods of genomic analysis
EP1386264A2 (en) * 2001-04-10 2004-02-04 BioTech Holding B.V. System for cellular storage and genetic information retrieval
US20030211501A1 (en) * 2001-04-18 2003-11-13 Stephens J. Claiborne Method and system for determining haplotypes from a collection of polymorphisms
US6909971B2 (en) * 2001-06-08 2005-06-21 Licentia Oy Method for gene mapping from chromosome and phenotype data
FI114551B (fi) * 2001-06-13 2004-11-15 Licentia Oy Menetelmä, muistiväline ja tietokonejärjestelmä geenipaikannuksen kromosomi- ja fenotyyppidatasta
WO2003010537A1 (en) * 2001-07-24 2003-02-06 Curagen Corporation Family based tests of association using pooled dna and snp markers
EP1288835A1 (en) * 2001-08-31 2003-03-05 Hitachi, Ltd. A method for defining gene hunting studies
KR20020005535A (ko) * 2001-11-08 2002-01-17 이성섭 BAC-end sequencing 및 STC approach genome sequencingwith shotgun 방법의 전체 염기 서열 결정 연구의 자동화및 통합화를 지원하는 소프트웨어 설계·제작 모형
WO2003048999A2 (en) * 2001-12-03 2003-06-12 Dnaprint Genomics, Inc. Methods and apparatus for genetic classification
US7107155B2 (en) * 2001-12-03 2006-09-12 Dnaprint Genomics, Inc. Methods for the identification of genetic features for complex genetics classifiers
US7640113B2 (en) * 2001-12-03 2009-12-29 Dnaprint Genomics, Inc. Methods and apparatus for complex genetics classification based on correspondence analysis and linear/quadratic analysis
US7373253B2 (en) * 2002-02-12 2008-05-13 Idaho Technology Multi-test analysis of real-time nucleic acid amplification
US20040112299A1 (en) * 2002-03-25 2004-06-17 Muir William M Incorporation of competitive effects in breeding program to increase performance levels and improve animal well being
US7286941B1 (en) 2002-08-09 2007-10-23 Myriad Genetics, Inc. Method for haplotype analysis
US20040197845A1 (en) * 2002-08-30 2004-10-07 Arjang Hassibi Methods and apparatus for pathogen detection, identification and/or quantification
US9740817B1 (en) 2002-10-18 2017-08-22 Dennis Sunga Fernandez Apparatus for biological sensing and alerting of pharmaco-genomic mutation
US20040146870A1 (en) * 2003-01-27 2004-07-29 Guochun Liao Systems and methods for predicting specific genetic loci that affect phenotypic traits
US20040210400A1 (en) * 2003-01-27 2004-10-21 Perlegen Sciences, Inc. Analysis methods for individual genotyping
WO2004072294A2 (en) * 2003-02-12 2004-08-26 Genizon Svenska Ab Methods and means for nucleic acid sequencing
US20050019787A1 (en) * 2003-04-03 2005-01-27 Perlegen Sciences, Inc., A Delaware Corporation Apparatus and methods for analyzing and characterizing nucleic acid sequences
US8346482B2 (en) 2003-08-22 2013-01-01 Fernandez Dennis S Integrated biosensor and simulation system for diagnosis and therapy
WO2005027719A2 (en) * 2003-09-12 2005-03-31 Perlegen Sciences, Inc. Methods and systems for identifying predisposition to the placebo effect
US20090087854A1 (en) * 2007-09-27 2009-04-02 Perlegen Sciences, Inc. Methods for genetic analysis
US7127355B2 (en) * 2004-03-05 2006-10-24 Perlegen Sciences, Inc. Methods for genetic analysis
US20070021918A1 (en) * 2004-04-26 2007-01-25 Georges Natsoulis Universal gene chip for high throughput chemogenomic analysis
US20060035250A1 (en) * 2004-06-10 2006-02-16 Georges Natsoulis Necessary and sufficient reagent sets for chemogenomic analysis
US7588892B2 (en) * 2004-07-19 2009-09-15 Entelos, Inc. Reagent sets and gene signatures for renal tubule injury
AU2006294565A1 (en) * 2005-09-30 2007-04-05 Perlegen Sciences, Inc. Methods and compositions for screening and treatment of disorders of blood glucose regulation
US20070198653A1 (en) * 2005-12-30 2007-08-23 Kurt Jarnagin Systems and methods for remote computer-based analysis of user-provided chemogenomic data
US7467118B2 (en) * 2006-01-12 2008-12-16 Entelos Inc. Adjusted sparse linear programming method for classifying multi-dimensional biological data
WO2007115095A2 (en) * 2006-03-29 2007-10-11 The Trustees Of Columbia University In The City Ofnew York Systems and methods for using molecular networks in genetic linkage analysis of complex traits
US20100021885A1 (en) * 2006-09-18 2010-01-28 Mark Fielden Reagent sets and gene signatures for non-genotoxic hepatocarcinogenicity
WO2008060566A2 (en) * 2006-11-17 2008-05-22 Motif Biosciences, Inc. Biometric analysis of populations defined by homozygous marker track length
US20080228699A1 (en) * 2007-03-16 2008-09-18 Expanse Networks, Inc. Creation of Attribute Combination Databases
US20090043752A1 (en) 2007-08-08 2009-02-12 Expanse Networks, Inc. Predicting Side Effect Attributes
ME01898B (me) 2008-08-12 2014-12-20 Zinfandel Pharmaceuticals Inc Metoda za identifikaciju faktora rizika od alchajmerove bolesti
US8846315B2 (en) 2008-08-12 2014-09-30 Zinfandel Pharmaceuticals, Inc. Disease risk factors and methods of use
US8108406B2 (en) 2008-12-30 2012-01-31 Expanse Networks, Inc. Pangenetic web user behavior prediction system
US8386519B2 (en) 2008-12-30 2013-02-26 Expanse Networks, Inc. Pangenetic web item recommendation system
EP3276526A1 (en) 2008-12-31 2018-01-31 23Andme, Inc. Finding relatives in a database
JP2014505055A (ja) 2011-01-10 2014-02-27 ジンファンデル ファーマシューティカルズ インコーポレイテッド アルツハイマー病を治療するための方法及び製剤
US9594777B1 (en) 2013-08-15 2017-03-14 Pivotal Software, Inc. In-database single-nucleotide genetic variant analysis
US10068050B2 (en) * 2013-10-30 2018-09-04 Vahagn Gurzadyan Revealing somatic sequences in human genome via Kolmogorov-Arnold technique
US10949473B2 (en) * 2014-05-21 2021-03-16 Knowledge Syntheses Systems and method for searching and analyzing big data
KR102169699B1 (ko) * 2019-12-27 2020-10-23 주식회사 클리노믹스 유전자 검사를 위한 맞춤형 유전자칩 및 이의 제작 방법
US11887698B2 (en) 2020-01-08 2024-01-30 Samsung Electronics Co., Ltd. Method and electronic device for building comprehensive genome scale metabolic model

Family Cites Families (7)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5374525A (en) * 1992-09-30 1994-12-20 University Of Utah Research Foundation Methods to determine predisposition to hypertension and association of variant angiotensinogen gene and hypertension
US5670314A (en) * 1994-02-22 1997-09-23 Regents Of The University Of California Genetic alterations that correlate with lung carcinomas
WO1998020165A2 (en) 1996-11-06 1998-05-14 Whitehead Institute For Biomedical Research Biallelic markers
EP0892068A1 (en) * 1997-07-18 1999-01-20 Genset Sa Method for generating a high density linkage disequilibrium-based map of the human genome
US5945522A (en) 1997-12-22 1999-08-31 Genset Prostate cancer gene
EP0991770B1 (en) 1997-12-22 2000-11-29 Genset Prostate cancer gene
JP2002529718A (ja) * 1998-11-10 2002-09-10 ジェンセット 検出可能な形質と結合された遺伝子を含むゲノム領域を同定するための方法、ソフトウエアおよび装置

Also Published As

Publication number Publication date
PT1129216E (pt) 2005-01-31
JP2002529718A (ja) 2002-09-10
WO2000028080A2 (en) 2000-05-18
AU771187B2 (en) 2004-03-18
EP1129216B1 (en) 2004-09-08
AU1069600A (en) 2000-05-29
DE69920032T2 (de) 2005-09-15
CA2348609A1 (en) 2000-05-18
DE69920032D1 (de) 2004-10-14
US6291182B1 (en) 2001-09-18
ES2229781T3 (es) 2005-04-16
EP1129216A2 (en) 2001-09-05
ATE275639T1 (de) 2004-09-15
WO2000028080A3 (en) 2000-08-17
US20030165836A1 (en) 2003-09-04
US20050158788A1 (en) 2005-07-21

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