IN2014MU01682A - - Google Patents

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Publication number
IN2014MU01682A
IN2014MU01682A IN1682MU2014A IN2014MU01682A IN 2014MU01682 A IN2014MU01682 A IN 2014MU01682A IN 1682MU2014 A IN1682MU2014 A IN 1682MU2014A IN 2014MU01682 A IN2014MU01682 A IN 2014MU01682A
Authority
IN
India
Prior art keywords
nucleic acid
acid sequence
index
subsequence
data
Prior art date
Application number
Other languages
English (en)
Inventor
Sterling Thomas
Nathan Dellinger
Original Assignee
Noblis Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Noblis Inc filed Critical Noblis Inc
Publication of IN2014MU01682A publication Critical patent/IN2014MU01682A/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING OR CALCULATING; COUNTING
    • G06F—ELECTRIC DIGITAL DATA PROCESSING
    • G06F16/00—Information retrieval; Database structures therefor; File system structures therefor
    • G06F16/20—Information retrieval; Database structures therefor; File system structures therefor of structured data, e.g. relational data
    • G06F16/22—Indexing; Data structures therefor; Storage structures
    • G06F16/2228—Indexing structures
    • G06F16/2255—Hash tables
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Theoretical Computer Science (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Medical Informatics (AREA)
  • Health & Medical Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Evolutionary Biology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Chemical & Material Sciences (AREA)
  • Software Systems (AREA)
  • Data Mining & Analysis (AREA)
  • Databases & Information Systems (AREA)
  • General Engineering & Computer Science (AREA)
  • General Physics & Mathematics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
IN1682MU2014 2013-05-29 2014-05-20 IN2014MU01682A (enExample)

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
US13/904,738 US10191929B2 (en) 2013-05-29 2013-05-29 Systems and methods for SNP analysis and genome sequencing

Publications (1)

Publication Number Publication Date
IN2014MU01682A true IN2014MU01682A (enExample) 2015-09-04

Family

ID=50884687

Family Applications (1)

Application Number Title Priority Date Filing Date
IN1682MU2014 IN2014MU01682A (enExample) 2013-05-29 2014-05-20

Country Status (5)

Country Link
US (3) US10191929B2 (enExample)
EP (1) EP2808814A3 (enExample)
CN (1) CN104217134A (enExample)
IN (1) IN2014MU01682A (enExample)
SG (1) SG10201402714UA (enExample)

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US10191929B2 (en) 2013-05-29 2019-01-29 Noblis, Inc. Systems and methods for SNP analysis and genome sequencing
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US10424396B2 (en) * 2015-03-27 2019-09-24 Sentieon Inc. Computation pipeline of location-dependent variant calls
US10560552B2 (en) 2015-05-21 2020-02-11 Noblis, Inc. Compression and transmission of genomic information
JP6884143B2 (ja) * 2015-10-21 2021-06-09 コーヒレント・ロジックス・インコーポレーテッド 階層的転置索引表を使用したｄｎａアラインメント
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KR102425673B1 (ko) * 2016-11-16 2022-07-26 일루미나, 인코포레이티드 시퀀싱 데이터 리드 재정렬 방법
US20200104285A1 (en) * 2017-03-29 2020-04-02 Nantomics, Llc Signature-hash for multi-sequence files
US11222712B2 (en) 2017-05-12 2022-01-11 Noblis, Inc. Primer design using indexed genomic information
CN112534507B (zh) * 2018-10-31 2024-03-15 因美纳有限公司 用于测序读值的分组和折叠的系统和方法
EP3938540A4 (en) * 2019-03-15 2022-12-14 The Trustees of Columbia University in the City of New York SEQUENCING DATA ANALYSIS SYSTEMS AND METHODS
CN112309501B (zh) * 2019-08-02 2025-01-28 华为技术有限公司 基因比对技术
US12195729B2 (en) 2020-04-16 2025-01-14 Noblis, Inc. Portable field-deployable nucleic acid sequencing kit

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CN104699998A (zh) 2013-12-06 2015-06-10 国际商业机器公司 用于对基因组进行压缩和解压缩的方法和装置
US10560552B2 (en) 2015-05-21 2020-02-11 Noblis, Inc. Compression and transmission of genomic information
US11222712B2 (en) 2017-05-12 2022-01-11 Noblis, Inc. Primer design using indexed genomic information

Also Published As

Publication number Publication date
EP2808814A3 (en) 2015-06-03
US20190146962A1 (en) 2019-05-16
US12141116B2 (en) 2024-11-12
US10191929B2 (en) 2019-01-29
US20140358937A1 (en) 2014-12-04
SG10201402714UA (en) 2014-12-30
EP2808814A2 (en) 2014-12-03
US20220253420A1 (en) 2022-08-11
US11308056B2 (en) 2022-04-19
CN104217134A (zh) 2014-12-17

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