IL299077A - Placing tiles and/or choosing a cycle-based weight set for naming the bases - Google Patents

Placing tiles and/or choosing a cycle-based weight set for naming the bases

Info

Publication number
IL299077A
IL299077A IL299077A IL29907722A IL299077A IL 299077 A IL299077 A IL 299077A IL 299077 A IL299077 A IL 299077A IL 29907722 A IL29907722 A IL 29907722A IL 299077 A IL299077 A IL 299077A
Authority
IL
Israel
Prior art keywords
weight set
sensor data
weights
neural network
sensing cycles
Prior art date
Application number
IL299077A
Other languages
English (en)
Hebrew (he)
Original Assignee
Illumina Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Priority claimed from US17/687,551 external-priority patent/US20220301657A1/en
Application filed by Illumina Inc filed Critical Illumina Inc
Priority claimed from PCT/US2022/020460 external-priority patent/WO2022197752A1/en
Publication of IL299077A publication Critical patent/IL299077A/en

Links

Classifications

    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/045—Combinations of networks
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/04—Architecture, e.g. interconnection topology
    • G06N3/048—Activation functions
    • G—PHYSICS
    • G06—COMPUTING; CALCULATING OR COUNTING
    • G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
    • G06N3/00—Computing arrangements based on biological models
    • G06N3/02—Neural networks
    • G06N3/06—Physical realisation, i.e. hardware implementation of neural networks, neurons or parts of neurons
    • G06N3/063—Physical realisation, i.e. hardware implementation of neural networks, neurons or parts of neurons using electronic means
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
    • G16B40/20—Supervised data analysis

Landscapes

  • Engineering & Computer Science (AREA)
  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • General Health & Medical Sciences (AREA)
  • Data Mining & Analysis (AREA)
  • Evolutionary Computation (AREA)
  • Software Systems (AREA)
  • Artificial Intelligence (AREA)
  • Biomedical Technology (AREA)
  • Medical Informatics (AREA)
  • General Physics & Mathematics (AREA)
  • General Engineering & Computer Science (AREA)
  • Mathematical Physics (AREA)
  • Computing Systems (AREA)
  • Molecular Biology (AREA)
  • Computational Linguistics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Evolutionary Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Computer Vision & Pattern Recognition (AREA)
  • Public Health (AREA)
  • Chemical & Material Sciences (AREA)
  • Bioethics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Databases & Information Systems (AREA)
  • Epidemiology (AREA)
  • Analytical Chemistry (AREA)
  • Neurology (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Compression, Expansion, Code Conversion, And Decoders (AREA)
  • Road Signs Or Road Markings (AREA)
  • Road Paving Structures (AREA)
  • Pens And Brushes (AREA)
  • Two-Way Televisions, Distribution Of Moving Picture Or The Like (AREA)
IL299077A 2021-03-16 2022-03-15 Placing tiles and/or choosing a cycle-based weight set for naming the bases IL299077A (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US202163161880P 2021-03-16 2021-03-16
US202163161896P 2021-03-16 2021-03-16
US17/687,551 US20220301657A1 (en) 2021-03-16 2022-03-04 Tile location and/or cycle based weight set selection for base calling
US17/687,583 US20220300811A1 (en) 2021-03-16 2022-03-04 Neural network parameter quantization for base calling
PCT/US2022/020460 WO2022197752A1 (en) 2021-03-16 2022-03-15 Tile location and/or cycle based weight set selection for base calling

Publications (1)

Publication Number Publication Date
IL299077A true IL299077A (en) 2023-02-01

Family

ID=85057463

Family Applications (1)

Application Number Title Priority Date Filing Date
IL299077A IL299077A (en) 2021-03-16 2022-03-15 Placing tiles and/or choosing a cycle-based weight set for naming the bases

Country Status (7)

Country Link
EP (2) EP4309179A1 (ko)
JP (1) JP2024510539A (ko)
KR (1) KR20230157230A (ko)
CN (2) CN115803815A (ko)
AU (2) AU2022238841A1 (ko)
CA (2) CA3183567A1 (ko)
IL (1) IL299077A (ko)

Also Published As

Publication number Publication date
CA3183567A1 (en) 2022-09-22
AU2022238841A1 (en) 2023-02-02
CN115699019A (zh) 2023-02-03
JP2024510539A (ja) 2024-03-08
KR20230157230A (ko) 2023-11-16
CA3183581A1 (en) 2022-09-22
EP4309080A1 (en) 2024-01-24
CN115803815A (zh) 2023-03-14
AU2022237501A1 (en) 2023-02-02
EP4309179A1 (en) 2024-01-24

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