IL252793A0 - A method for determining genotypes in regions of high homology - Google Patents
A method for determining genotypes in regions of high homologyInfo
- Publication number
- IL252793A0 IL252793A0 IL252793A IL25279317A IL252793A0 IL 252793 A0 IL252793 A0 IL 252793A0 IL 252793 A IL252793 A IL 252793A IL 25279317 A IL25279317 A IL 25279317A IL 252793 A0 IL252793 A0 IL 252793A0
- Authority
- IL
- Israel
- Prior art keywords
- regions
- high homology
- determining genotypes
- genotypes
- determining
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
Landscapes
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Health & Medical Sciences (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Physics & Mathematics (AREA)
- Organic Chemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- General Health & Medical Sciences (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Molecular Biology (AREA)
- Medical Informatics (AREA)
- Bioinformatics & Computational Biology (AREA)
- Evolutionary Biology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Microbiology (AREA)
- Immunology (AREA)
- Pathology (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201462097139P | 2014-12-29 | 2014-12-29 | |
| US201562234012P | 2015-09-28 | 2015-09-28 | |
| PCT/US2015/067547 WO2016109364A1 (en) | 2014-12-29 | 2015-12-28 | Method for determining genotypes in regions of high homology |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| IL252793A0 true IL252793A0 (en) | 2017-08-31 |
Family
ID=56164482
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| IL252793A IL252793A0 (en) | 2014-12-29 | 2017-06-08 | A method for determining genotypes in regions of high homology |
Country Status (9)
| Country | Link |
|---|---|
| US (2) | US20160188793A1 (https=) |
| EP (1) | EP3289502A4 (https=) |
| JP (1) | JP2018502602A (https=) |
| CN (1) | CN107111693A (https=) |
| AU (1) | AU2015374344A1 (https=) |
| CA (1) | CA2970345A1 (https=) |
| HK (1) | HK1243204A1 (https=) |
| IL (1) | IL252793A0 (https=) |
| WO (1) | WO2016109364A1 (https=) |
Families Citing this family (26)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US12129514B2 (en) | 2009-04-30 | 2024-10-29 | Molecular Loop Biosolutions, Llc | Methods and compositions for evaluating genetic markers |
| US9163281B2 (en) | 2010-12-23 | 2015-10-20 | Good Start Genetics, Inc. | Methods for maintaining the integrity and identification of a nucleic acid template in a multiplex sequencing reaction |
| US10851414B2 (en) | 2013-10-18 | 2020-12-01 | Good Start Genetics, Inc. | Methods for determining carrier status |
| WO2016040446A1 (en) * | 2014-09-10 | 2016-03-17 | Good Start Genetics, Inc. | Methods for selectively suppressing non-target sequences |
| WO2016112073A1 (en) | 2015-01-06 | 2016-07-14 | Good Start Genetics, Inc. | Screening for structural variants |
| CN106407746A (zh) * | 2016-11-04 | 2017-02-15 | 成都鑫云解码科技有限公司 | 呼吸系统对应的基因的突变位点的获取方法及装置 |
| CN106503488A (zh) * | 2016-11-04 | 2017-03-15 | 成都鑫云解码科技有限公司 | 消化系统对应的基因的突变位点的获取方法及装置 |
| CN106407744A (zh) * | 2016-11-04 | 2017-02-15 | 成都鑫云解码科技有限公司 | 饮食与健康对应的基因的突变位点的获取方法及装置 |
| CN106529209A (zh) * | 2016-11-04 | 2017-03-22 | 成都鑫云解码科技有限公司 | 免疫系统对应的基因的突变位点的获取方法及装置 |
| CN106503489A (zh) * | 2016-11-04 | 2017-03-15 | 成都鑫云解码科技有限公司 | 心血管系统对应的基因的突变位点的获取方法及装置 |
| CN106407745A (zh) * | 2016-11-04 | 2017-02-15 | 成都鑫云解码科技有限公司 | 皮肤对应的基因的突变位点的获取方法及装置 |
| CN106407748A (zh) * | 2016-11-04 | 2017-02-15 | 成都鑫云解码科技有限公司 | 内分泌与代谢系统对应的基因突变位点的获取方法及装置 |
| CN106503490A (zh) * | 2016-11-04 | 2017-03-15 | 成都鑫云解码科技有限公司 | 泌尿与生殖系统对应的基因的突变位点的获取方法及装置 |
| CN106407747A (zh) * | 2016-11-04 | 2017-02-15 | 成都鑫云解码科技有限公司 | 肿瘤对应的基因的突变位点的获取方法及装置 |
| US11993811B2 (en) * | 2017-01-31 | 2024-05-28 | Myriad Women's Health, Inc. | Systems and methods for identifying and quantifying gene copy number variations |
| US10894978B2 (en) | 2017-12-19 | 2021-01-19 | Bioo Scientific Corporation | Genetic test for detecting congenital adrenal hyperplasia |
| CN108251517A (zh) * | 2017-12-29 | 2018-07-06 | 武汉艾德士生物科技有限公司 | 一种分析体系内相似序列相对数量的方法 |
| WO2019182956A1 (en) * | 2018-03-22 | 2019-09-26 | Myriad Women's Health, Inc. | Variant calling using machine learning |
| CN110699436B (zh) * | 2018-07-10 | 2023-07-21 | 天津华大医学检验所有限公司 | 确定待测样本的smn1基因是否存在七号外显子缺失的方法和系统 |
| JP7361774B2 (ja) * | 2018-07-27 | 2023-10-16 | ミリアド・ウィメンズ・ヘルス・インコーポレーテッド | シーケンスリードの独立したアラインメントおよびペアリングによって高度に相同なシーケンスにおける遺伝的変異を検出するための方法 |
| JP2022534071A (ja) * | 2019-05-22 | 2022-07-27 | ソウル ナショナル ユニバーシティ アールアンドディービー ファウンデーション | Ｎｇｓデータを用いて遺伝型を予測する方法及び装置 |
| MX2021008003A (es) * | 2019-09-05 | 2021-08-18 | Illumina Inc | Metodos y sistemas para diagnosticar a partir de datos de secuenciacion de genoma completo. |
| CN113724791B (zh) * | 2021-09-09 | 2024-03-12 | 天津华大医学检验所有限公司 | Cyp21a2基因ngs数据分析的方法、装置及应用 |
| CN113564247B (zh) * | 2021-09-24 | 2022-01-28 | 北京贝瑞和康生物技术有限公司 | 同时检测先天性肾上腺皮质增生症相关9个基因多种突变的引物组和试剂盒 |
| EP4490735A1 (en) | 2022-03-08 | 2025-01-15 | Illumina Inc | Multi-pass software-accelerated genomic read mapping engine |
| CA3259709A1 (en) * | 2022-07-07 | 2024-01-11 | Illumina, Inc. | METHODS AND SYSTEMS FOR DETECTING RECOMBINATION EVENT |
Family Cites Families (14)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20060210967A1 (en) * | 2004-07-02 | 2006-09-21 | Agan Brian K | Re-sequencing pathogen microarray |
| US8407013B2 (en) * | 2005-06-07 | 2013-03-26 | Peter K. Rogan | AB initio generation of single copy genomic probes |
| CN101067156A (zh) * | 2007-05-18 | 2007-11-07 | 中国人民解放军第三军医大学第一附属医院 | 一种基于选择性探针的多重pcr方法及其应用 |
| WO2010104608A2 (en) * | 2009-03-13 | 2010-09-16 | Life Technologies Corporation | Computer implemented method for indexing reference genome |
| CN102597272A (zh) * | 2009-11-12 | 2012-07-18 | 艾索特里克斯遗传实验室有限责任公司 | 基因座的拷贝数分析 |
| US20120215463A1 (en) * | 2011-02-23 | 2012-08-23 | The Mitre Corporation | Rapid Genomic Sequence Homology Assessment Scheme Based on Combinatorial-Analytic Concepts |
| WO2012125848A2 (en) * | 2011-03-16 | 2012-09-20 | Baylor College Of Medicine | A method for comprehensive sequence analysis using deep sequencing technology |
| US20130184999A1 (en) * | 2012-01-05 | 2013-07-18 | Yan Ding | Systems and methods for cancer-specific drug targets and biomarkers discovery |
| CN102952877B (zh) * | 2012-08-06 | 2014-09-24 | 深圳华大基因研究院 | 检测α珠蛋白基因拷贝数的方法和系统 |
| CN104781421B (zh) * | 2012-09-04 | 2020-06-05 | 夸登特健康公司 | 检测稀有突变和拷贝数变异的系统和方法 |
| WO2014204991A1 (en) * | 2013-06-17 | 2014-12-24 | Verinata Health, Inc. | Method for determining copy number variations in sex chromosomes |
| WO2015058086A1 (en) * | 2013-10-18 | 2015-04-23 | Good Start Genetics, Inc. | Methods for copy number determination |
| US10851414B2 (en) * | 2013-10-18 | 2020-12-01 | Good Start Genetics, Inc. | Methods for determining carrier status |
| WO2016040446A1 (en) * | 2014-09-10 | 2016-03-17 | Good Start Genetics, Inc. | Methods for selectively suppressing non-target sequences |
-
2015
- 2015-12-28 AU AU2015374344A patent/AU2015374344A1/en not_active Abandoned
- 2015-12-28 CN CN201580070614.XA patent/CN107111693A/zh active Pending
- 2015-12-28 HK HK18102609.9A patent/HK1243204A1/zh unknown
- 2015-12-28 JP JP2017553050A patent/JP2018502602A/ja not_active Withdrawn
- 2015-12-28 US US14/979,519 patent/US20160188793A1/en not_active Abandoned
- 2015-12-28 EP EP15876064.5A patent/EP3289502A4/en not_active Withdrawn
- 2015-12-28 WO PCT/US2015/067547 patent/WO2016109364A1/en not_active Ceased
- 2015-12-28 CA CA2970345A patent/CA2970345A1/en not_active Abandoned
-
2017
- 2017-06-08 IL IL252793A patent/IL252793A0/en unknown
-
2020
- 2020-07-30 US US16/944,048 patent/US20210012859A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| US20210012859A1 (en) | 2021-01-14 |
| US20160188793A1 (en) | 2016-06-30 |
| EP3289502A4 (en) | 2018-09-12 |
| CN107111693A (zh) | 2017-08-29 |
| HK1243204A1 (zh) | 2018-07-06 |
| JP2018502602A (ja) | 2018-02-01 |
| WO2016109364A1 (en) | 2016-07-07 |
| AU2015374344A1 (en) | 2017-07-06 |
| CA2970345A1 (en) | 2016-07-07 |
| EP3289502A1 (en) | 2018-03-07 |
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