HK1203220A1 - Methods for determining absolute genome-wide copy number variations of complex tumors - Google Patents
Methods for determining absolute genome-wide copy number variations of complex tumorsInfo
- Publication number
- HK1203220A1 HK1203220A1 HK15103681.1A HK15103681A HK1203220A1 HK 1203220 A1 HK1203220 A1 HK 1203220A1 HK 15103681 A HK15103681 A HK 15103681A HK 1203220 A1 HK1203220 A1 HK 1203220A1
- Authority
- HK
- Hong Kong
- Prior art keywords
- genome
- methods
- copy number
- number variations
- determining absolute
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/10—Ploidy or copy number detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/20—Sequence assembly
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
Applications Claiming Priority (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201261643225P | 2012-05-04 | 2012-05-04 | |
PCT/US2013/039777 WO2013166517A1 (en) | 2012-05-04 | 2013-05-06 | Methods for determining absolute genome-wide copy number variations of complex tumors |
Publications (1)
Publication Number | Publication Date |
---|---|
HK1203220A1 true HK1203220A1 (en) | 2015-10-23 |
Family
ID=49514954
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
HK15103681.1A HK1203220A1 (en) | 2012-05-04 | 2015-04-15 | Methods for determining absolute genome-wide copy number variations of complex tumors |
Country Status (4)
Country | Link |
---|---|
EP (1) | EP2844771A4 (en) |
CN (1) | CN104428425A (en) |
HK (1) | HK1203220A1 (en) |
WO (1) | WO2013166517A1 (en) |
Families Citing this family (36)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
EP2877594B1 (en) * | 2012-07-20 | 2019-12-04 | Verinata Health, Inc. | Detecting and classifying copy number variation in a fetal genome |
JP2015531240A (en) * | 2012-10-09 | 2015-11-02 | ファイブ3・ジェノミクス・エルエルシーFive3 Genomics, Llc | System and method for tumor clonality analysis |
CN105229168B (en) | 2013-02-20 | 2020-07-17 | 生物纳米基因有限公司 | Characterization of molecules in nanofluids |
US10844424B2 (en) * | 2013-02-20 | 2020-11-24 | Bionano Genomics, Inc. | Reduction of bias in genomic coverage measurements |
WO2015130696A1 (en) | 2014-02-25 | 2015-09-03 | Bionano Genomics, Inc. | Reduction of bias in genomic coverage measurements |
US9618474B2 (en) | 2014-12-18 | 2017-04-11 | Edico Genome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
US10020300B2 (en) | 2014-12-18 | 2018-07-10 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
US9859394B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Graphene FET devices, systems, and methods of using the same for sequencing nucleic acids |
WO2016100049A1 (en) | 2014-12-18 | 2016-06-23 | Edico Genome Corporation | Chemically-sensitive field effect transistor |
US9857328B2 (en) | 2014-12-18 | 2018-01-02 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems and methods for manufacturing and using the same |
US10006910B2 (en) | 2014-12-18 | 2018-06-26 | Agilome, Inc. | Chemically-sensitive field effect transistors, systems, and methods for manufacturing and using the same |
US10395759B2 (en) * | 2015-05-18 | 2019-08-27 | Regeneron Pharmaceuticals, Inc. | Methods and systems for copy number variant detection |
KR101828052B1 (en) * | 2015-06-24 | 2018-02-09 | 사회복지법인 삼성생명공익재단 | Method and apparatus for analyzing copy-number variation (cnv) of gene |
WO2017106768A1 (en) | 2015-12-17 | 2017-06-22 | Guardant Health, Inc. | Methods to determine tumor gene copy number by analysis of cell-free dna |
KR20180107148A (en) * | 2016-01-11 | 2018-10-01 | 에디코 게놈, 코포레이션 | Genome infrastructure for processing and analysis of on-site or cloud-based DNA and RNA |
CN105653898A (en) * | 2016-01-12 | 2016-06-08 | 江苏格致生命科技有限公司 | Cancer detection kit based on large-scale data mining and detection method |
WO2017201081A1 (en) | 2016-05-16 | 2017-11-23 | Agilome, Inc. | Graphene fet devices, systems, and methods of using the same for sequencing nucleic acids |
WO2018057770A1 (en) * | 2016-09-22 | 2018-03-29 | Illumina, Inc. | Somatic copy number variation detection |
CN106367512A (en) * | 2016-09-22 | 2017-02-01 | 上海序康医疗科技有限公司 | Method and system for identifying tumor loads in samples |
CN106566877A (en) * | 2016-10-31 | 2017-04-19 | 天津诺禾致源生物信息科技有限公司 | Gene mutation detection method and apparatus |
CN106649206B (en) * | 2016-12-17 | 2019-03-22 | 济南鼎道企业管理咨询有限公司 | Seed genoid engineered crop is mixed into Risk Monitoring sampling method for making sample |
WO2018183745A1 (en) * | 2017-03-30 | 2018-10-04 | Illumina, Inc. | Genomic data analysis system and method |
CN109858211B (en) * | 2017-08-23 | 2021-02-19 | 北京三快在线科技有限公司 | Sliding track-based man-machine recognition method and device and electronic equipment |
CN109988833A (en) * | 2017-12-29 | 2019-07-09 | 南京格致基因生物科技有限公司 | The judgment method and system of cervical carcinoma |
CN108268752B (en) * | 2018-01-18 | 2019-02-01 | 东莞博奥木华基因科技有限公司 | A kind of chromosome abnormality detection device |
CN108985009B (en) * | 2018-08-29 | 2022-06-07 | 北京希望组生物科技有限公司 | Method for obtaining gene haplotype sequence and application thereof |
CN109637586B (en) * | 2018-12-27 | 2020-11-17 | 北京优迅医学检验实验室有限公司 | Method and device for correcting sequencing depth |
CN110010197B (en) * | 2019-03-29 | 2021-07-20 | 深圳裕策生物科技有限公司 | Method, device and storage medium for detecting single nucleotide variation based on blood circulation tumor DNA |
CN110570907B (en) * | 2019-09-04 | 2021-07-30 | 北京橡鑫生物科技有限公司 | Method for establishing baseline and model for detecting instability of microsatellite and application |
WO2021114139A1 (en) * | 2019-12-11 | 2021-06-17 | 深圳华大基因股份有限公司 | Copy number variation detection method and device based on blood circulating tumor dna |
CN113889187B (en) * | 2021-09-24 | 2022-12-06 | 上海仁东医学检验所有限公司 | Single-sample allele copy number variation detection method, probe set and kit |
CN113990389B (en) * | 2021-12-27 | 2022-04-22 | 北京优迅医疗器械有限公司 | Method and device for deducing tumor purity and ploidy |
CN115019892B (en) * | 2022-06-13 | 2023-04-07 | 郑州大学第一附属医院 | Confidence determination method for sequence coverage in sequencing of environmental microbiota metagenome |
CN114990202B (en) * | 2022-07-29 | 2022-09-30 | 普瑞基准科技(北京)有限公司 | Application of SNP (Single nucleotide polymorphism) locus in evaluation of genome abnormality and method for evaluating genome abnormality |
CN117334249A (en) * | 2023-05-30 | 2024-01-02 | 上海品峰医疗科技有限公司 | Method, apparatus and medium for detecting copy number variation based on amplicon sequencing data |
CN117520928B (en) * | 2024-01-05 | 2024-03-19 | 南京邮电大学 | Human body fall detection method based on channel state information target speed estimation |
Family Cites Families (30)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5547839A (en) | 1989-06-07 | 1996-08-20 | Affymax Technologies N.V. | Sequencing of surface immobilized polymers utilizing microflourescence detection |
US6401267B1 (en) | 1993-09-27 | 2002-06-11 | Radoje Drmanac | Methods and compositions for efficient nucleic acid sequencing |
US5795782A (en) | 1995-03-17 | 1998-08-18 | President & Fellows Of Harvard College | Characterization of individual polymer molecules based on monomer-interface interactions |
US5750341A (en) | 1995-04-17 | 1998-05-12 | Lynx Therapeutics, Inc. | DNA sequencing by parallel oligonucleotide extensions |
GB9620209D0 (en) | 1996-09-27 | 1996-11-13 | Cemu Bioteknik Ab | Method of sequencing DNA |
US6309824B1 (en) | 1997-01-16 | 2001-10-30 | Hyseq, Inc. | Methods for analyzing a target nucleic acid using immobilized heterogeneous mixtures of oligonucleotide probes |
AU2496900A (en) | 1999-01-06 | 2000-07-24 | Hyseq, Inc. | Enhanced sequencing by hybridization using pools of probes |
GB9901475D0 (en) | 1999-01-22 | 1999-03-17 | Pyrosequencing Ab | A method of DNA sequencing |
US7258838B2 (en) | 1999-06-22 | 2007-08-21 | President And Fellows Of Harvard College | Solid state molecular probe device |
EP1192453B1 (en) | 1999-06-22 | 2012-02-15 | President and Fellows of Harvard College | Molecular and atomic scale evaluation of biopolymers |
US6818395B1 (en) | 1999-06-28 | 2004-11-16 | California Institute Of Technology | Methods and apparatus for analyzing polynucleotide sequences |
WO2001023610A2 (en) | 1999-09-29 | 2001-04-05 | Solexa Ltd. | Polynucleotide sequencing |
US10229244B2 (en) * | 2002-11-11 | 2019-03-12 | Affymetrix, Inc. | Methods for identifying DNA copy number changes using hidden markov model based estimations |
CA2897376A1 (en) | 2003-02-26 | 2004-09-10 | Radoje T. Drmanac | Modular system and probes for dna analysis |
WO2006028508A2 (en) | 2004-03-23 | 2006-03-16 | President And Fellows Of Harvard College | Methods and apparatus for characterizing polynucleotides |
JP4533015B2 (en) | 2004-06-15 | 2010-08-25 | キヤノン株式会社 | Compound and organic electroluminescence device using the same |
WO2006073504A2 (en) | 2004-08-04 | 2006-07-13 | President And Fellows Of Harvard College | Wobble sequencing |
CA2577079C (en) | 2004-08-13 | 2014-05-20 | President And Fellows Of Harvard College | An ultra high-throughput opti-nanopore dna readout platform |
CA2611743C (en) | 2005-06-15 | 2019-12-31 | Callida Genomics, Inc. | Nucleic acid analysis by forming and tracking aliquoted fragments of a target polynucleotide |
EP1951900B1 (en) | 2005-10-07 | 2016-06-15 | Callida Genomics, Inc. | Self-assembled single molecule arrays and uses thereof |
AU2007249635B2 (en) | 2005-10-07 | 2012-05-31 | Complete Genomics, Inc. | High throughput genome sequencing on DNA arrays |
WO2007120208A2 (en) | 2005-11-14 | 2007-10-25 | President And Fellows Of Harvard College | Nanogrid rolling circle dna sequencing |
EP3091462B1 (en) * | 2005-12-14 | 2020-06-17 | Cold Spring Harbor Laboratory | Methods for assessing probabilistic measures of clinical outcome using genomic profiling |
WO2008070352A2 (en) | 2006-10-27 | 2008-06-12 | Complete Genomics, Inc. | Efficient arrays of amplified polynucleotides |
US20090111705A1 (en) | 2006-11-09 | 2009-04-30 | Complete Genomics, Inc. | Selection of dna adaptor orientation by hybrid capture |
US20090105961A1 (en) | 2006-11-09 | 2009-04-23 | Complete Genomics, Inc. | Methods of nucleic acid identification in large-scale sequencing |
US7960110B2 (en) * | 2006-11-15 | 2011-06-14 | The Regents Of The University Of California | Detection of chromosomal region copy number changes to diagnose melanoma |
US8951731B2 (en) | 2007-10-15 | 2015-02-10 | Complete Genomics, Inc. | Sequence analysis using decorated nucleic acids |
US8725422B2 (en) * | 2010-10-13 | 2014-05-13 | Complete Genomics, Inc. | Methods for estimating genome-wide copy number variations |
EP3591073B1 (en) * | 2012-09-04 | 2021-12-01 | Guardant Health, Inc. | Methods to detect rare mutations and copy number variation |
-
2013
- 2013-05-06 WO PCT/US2013/039777 patent/WO2013166517A1/en active Application Filing
- 2013-05-06 EP EP13784660.6A patent/EP2844771A4/en not_active Withdrawn
- 2013-05-06 CN CN201380034335.9A patent/CN104428425A/en active Pending
-
2015
- 2015-04-15 HK HK15103681.1A patent/HK1203220A1/en unknown
Also Published As
Publication number | Publication date |
---|---|
WO2013166517A1 (en) | 2013-11-07 |
EP2844771A1 (en) | 2015-03-11 |
EP2844771A4 (en) | 2015-12-02 |
CN104428425A (en) | 2015-03-18 |
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