GB2618727B - Chromosome interaction markers - Google Patents

Chromosome interaction markers Download PDF

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Publication number
GB2618727B
GB2618727B GB2313067.7A GB202313067A GB2618727B GB 2618727 B GB2618727 B GB 2618727B GB 202313067 A GB202313067 A GB 202313067A GB 2618727 B GB2618727 B GB 2618727B
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United Kingdom
Prior art keywords
chromosome interaction
interaction markers
markers
chromosome
interaction
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
GB2313067.7A
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English (en)
Other versions
GB202313067D0 (en
GB2618727A (en
Inventor
Selvam Ramadass Aroul
Hunter Ewan
Akoulitchev Alexandre
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Oxford Biodynamics PLC
Original Assignee
Oxford Biodynamics PLC
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
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Publication of GB202313067D0 publication Critical patent/GB202313067D0/en
Publication of GB2618727A publication Critical patent/GB2618727A/en
Application granted granted Critical
Publication of GB2618727B publication Critical patent/GB2618727B/en
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/686—Polymerase chain reaction [PCR]
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2531/00—Reactions of nucleic acids characterised by
    • C12Q2531/10—Reactions of nucleic acids characterised by the purpose being amplify/increase the copy number of target nucleic acid
    • C12Q2531/113—PCR
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/52—Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Genetics & Genomics (AREA)
  • Pathology (AREA)
  • Microbiology (AREA)
  • General Engineering & Computer Science (AREA)
  • Biophysics (AREA)
  • Molecular Biology (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Oncology (AREA)
  • Hospice & Palliative Care (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Saccharide Compounds (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
  • Medicines Containing Material From Animals Or Micro-Organisms (AREA)
GB2313067.7A 2021-03-04 2022-03-03 Chromosome interaction markers Active GB2618727B (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US202163156659P 2021-03-04 2021-03-04
US202163282284P 2021-11-23 2021-11-23
PCT/GB2022/050561 WO2022185062A1 (en) 2021-03-04 2022-03-03 Chromosome interaction markers

Publications (3)

Publication Number Publication Date
GB202313067D0 GB202313067D0 (en) 2023-10-11
GB2618727A GB2618727A (en) 2023-11-15
GB2618727B true GB2618727B (en) 2024-07-17

Family

ID=80735500

Family Applications (1)

Application Number Title Priority Date Filing Date
GB2313067.7A Active GB2618727B (en) 2021-03-04 2022-03-03 Chromosome interaction markers

Country Status (15)

Country Link
US (1) US20240229135A9 (enExample)
EP (1) EP4301874B1 (enExample)
JP (1) JP2024511292A (enExample)
KR (1) KR20240006020A (enExample)
AU (1) AU2022230780B2 (enExample)
BR (1) BR112023017802A2 (enExample)
CA (1) CA3209544A1 (enExample)
ES (1) ES3029416T3 (enExample)
GB (1) GB2618727B (enExample)
HU (1) HUE071359T2 (enExample)
IL (1) IL304883A (enExample)
PL (1) PL4301874T3 (enExample)
TW (1) TW202302862A (enExample)
WO (1) WO2022185062A1 (enExample)
ZA (1) ZA202309162B (enExample)

Families Citing this family (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
GB202412610D0 (en) * 2024-08-28 2024-10-09 Oxford BioDynamics PLC Screening method

Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2019086898A2 (en) * 2017-11-03 2019-05-09 Oxford Biodynamics Limited Genetic regulation

Family Cites Families (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2020198676A1 (en) * 2019-03-28 2020-10-01 Bristol-Myers Squibb Company Methods of treating tumor
GB2626699B (en) * 2019-05-08 2024-11-20 Oxford BioDynamics PLC Chromosome Conformation Markers of Prostate Cancer and Lymphoma
WO2021228888A1 (en) * 2020-05-12 2021-11-18 Asylia Diagnostics Biomarkers for hyperprogressive disease and therapy response after immunotherapy

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2019086898A2 (en) * 2017-11-03 2019-05-09 Oxford Biodynamics Limited Genetic regulation

Non-Patent Citations (6)

* Cited by examiner, † Cited by third party
Title
DENIS MORGANE ET AL, "How Can Immune Checkpoint Inhibitors Cause Hyperprogression in Solid Tumors?", FRONTIERS IN IMMUNOLOGY, Vol. 11, (20200120), Lausanne, CH, ISSN 1664-3224, DOI:10.3389/fimmu.2020.00492, figure 1 *
DONGHAI XIONG ET AL, "Immunogenomic Landscape Contributes to Hyperprogressive Disease after Anti-PD-1 Immunotherapy for Cancer", ISCIENCE, vol. 9, (20181101), pgs 258-277, US, ISSN 2589-0042, DOI:10.1016/j.isci.2018.10.021, abstract, table S5 *
Hunter Ewan ET AL, "Development and validation of blood-based predictive biomarkers for response to PD-(L)-1 checkpoint inhibitors: evidence of a universal systemic core of 3D immunogenetic profiling across multiple oncological indications", medRxiv,(20211227), pg 21, DOI:10.1101/2021.12.21.21268094 *
Kato Shumei ET AL, "Hyperprogressors after immunotherapy: Analysis of genomic alterations associated with accelerated growth rate", Clinical cancer research, (20170801), pgs 4242-4250, US, DOI:10.1158/1078-0432.CCR-16-3133, Retrieved from the Internet: URL: https://watermark.silverchair.com *
Ramadass Aroul ET AL, "EpiSwitch Methodology", https://www.oxfordbiodynamics.com/wp-content/uploads/2020/06/EpiSwitch_Methodology-Jun-2020-US.pdf, (202006), Retrieved from the Internet:URL: https://www.oxfordbiodynamics.com/wp-content/uploads/2020/06/EpiSwitch_Methodology-Jun-2020-US.pdf, abstract *
XUEPING WANG ET AL, "The biomarkers of hyperprogressive disease in PD-1/PD-L1 blockage therapy", MOLECULAR CANCER, vol. 19, no. 1, (20200502), DOI: 10.1186/s12943-020-01200-x, abstract *

Also Published As

Publication number Publication date
JP2024511292A (ja) 2024-03-13
US20240229135A9 (en) 2024-07-11
BR112023017802A2 (pt) 2023-12-12
TW202302862A (zh) 2023-01-16
AU2022230780A1 (en) 2023-10-12
EP4301874C0 (en) 2025-04-23
HUE071359T2 (hu) 2025-08-28
ES3029416T3 (en) 2025-06-24
EP4301874B1 (en) 2025-04-23
GB202313067D0 (en) 2023-10-11
WO2022185062A1 (en) 2022-09-09
AU2022230780B2 (en) 2024-05-23
ZA202309162B (en) 2025-03-26
GB2618727A (en) 2023-11-15
US20240132959A1 (en) 2024-04-25
PL4301874T3 (pl) 2025-06-23
KR20240006020A (ko) 2024-01-12
CA3209544A1 (en) 2022-09-09
EP4301874A1 (en) 2024-01-10
IL304883A (en) 2023-10-01

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