GB2453377A - Transmembrane protein pores and molecular adapters therefore. - Google Patents

Transmembrane protein pores and molecular adapters therefore. Download PDF

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Publication number
GB2453377A
GB2453377A GB0719531A GB0719531A GB2453377A GB 2453377 A GB2453377 A GB 2453377A GB 0719531 A GB0719531 A GB 0719531A GB 0719531 A GB0719531 A GB 0719531A GB 2453377 A GB2453377 A GB 2453377A
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Prior art keywords
pore
misc
thr
lys
feature
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Withdrawn
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GB0719531A
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English (en)
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GB0719531D0 (en
Inventor
John Hagan Bayley
Haichen Wu
Giovanni Maglia
Yann Astier
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Oxford University Innovation Ltd
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Oxford University Innovation Ltd
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Priority to GB0719531A priority Critical patent/GB2453377A/en
Publication of GB0719531D0 publication Critical patent/GB0719531D0/en
Priority to AU2008306633A priority patent/AU2008306633A1/en
Priority to CA2701602A priority patent/CA2701602A1/en
Priority to EP08806515.6A priority patent/EP2198046B1/en
Priority to JP2010527535A priority patent/JP2010539966A/ja
Priority to PCT/GB2008/003372 priority patent/WO2009044170A1/en
Priority to US12/681,643 priority patent/US8822160B2/en
Publication of GB2453377A publication Critical patent/GB2453377A/en
Priority to IL204834A priority patent/IL204834A0/en
Withdrawn legal-status Critical Current

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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6872Intracellular protein regulatory factors and their receptors, e.g. including ion channels
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/305Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Micrococcaceae (F)
    • C07K14/31Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Micrococcaceae (F) from Staphylococcus (G)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/34Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase
    • C12Q1/44Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving hydrolase involving esterase
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869Methods for sequencing
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10TTECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00Chemistry: analytical and immunological testing
    • Y10T436/14Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/145555Hetero-N
    • Y10T436/147777Plural nitrogen in the same ring [e.g., barbituates, creatinine, etc.]

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Microbiology (AREA)
  • Analytical Chemistry (AREA)
  • Biotechnology (AREA)
  • Genetics & Genomics (AREA)
  • Biophysics (AREA)
  • Biomedical Technology (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • General Engineering & Computer Science (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Cell Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Pathology (AREA)
  • General Physics & Mathematics (AREA)
  • Food Science & Technology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Peptides Or Proteins (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Investigating Or Analyzing Materials By The Use Of Electric Means (AREA)
GB0719531A 2007-10-05 2007-10-05 Transmembrane protein pores and molecular adapters therefore. Withdrawn GB2453377A (en)

Priority Applications (8)

Application Number Priority Date Filing Date Title
GB0719531A GB2453377A (en) 2007-10-05 2007-10-05 Transmembrane protein pores and molecular adapters therefore.
AU2008306633A AU2008306633A1 (en) 2007-10-05 2008-10-06 Molecular adaptors
CA2701602A CA2701602A1 (en) 2007-10-05 2008-10-06 Molecular adaptors
EP08806515.6A EP2198046B1 (en) 2007-10-05 2008-10-06 Molecular adaptors
JP2010527535A JP2010539966A (ja) 2007-10-05 2008-10-06 分子アダプター
PCT/GB2008/003372 WO2009044170A1 (en) 2007-10-05 2008-10-06 Molecular adaptors
US12/681,643 US8822160B2 (en) 2007-10-05 2008-10-06 Molecular adaptors
IL204834A IL204834A0 (en) 2007-10-05 2010-04-06 Molecular adaptors

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
GB0719531A GB2453377A (en) 2007-10-05 2007-10-05 Transmembrane protein pores and molecular adapters therefore.

Publications (2)

Publication Number Publication Date
GB0719531D0 GB0719531D0 (en) 2007-11-14
GB2453377A true GB2453377A (en) 2009-04-08

Family

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Family Applications (1)

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GB0719531A Withdrawn GB2453377A (en) 2007-10-05 2007-10-05 Transmembrane protein pores and molecular adapters therefore.

Country Status (8)

Country Link
US (1) US8822160B2 (enExample)
EP (1) EP2198046B1 (enExample)
JP (1) JP2010539966A (enExample)
AU (1) AU2008306633A1 (enExample)
CA (1) CA2701602A1 (enExample)
GB (1) GB2453377A (enExample)
IL (1) IL204834A0 (enExample)
WO (1) WO2009044170A1 (enExample)

Cited By (31)

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US8785211B2 (en) 2005-11-15 2014-07-22 Isis Innovation Limited Methods using pores
US8822160B2 (en) 2007-10-05 2014-09-02 Isis Innovation Limited Molecular adaptors
US9222082B2 (en) 2009-01-30 2015-12-29 Oxford Nanopore Technologies Limited Hybridization linkers
US9447152B2 (en) 2008-07-07 2016-09-20 Oxford Nanopore Technologies Limited Base-detecting pore
US9562887B2 (en) 2008-11-14 2017-02-07 Oxford University Innovation Limited Methods of enhancing translocation of charged analytes through transmembrane protein pores
US9732381B2 (en) 2009-03-25 2017-08-15 Oxford University Innovation Limited Method for sequencing a heteropolymeric target nucleic acid sequence
US9751915B2 (en) 2011-02-11 2017-09-05 Oxford Nanopore Technologies Ltd. Mutant pores
US9777049B2 (en) 2012-04-10 2017-10-03 Oxford Nanopore Technologies Ltd. Mutant lysenin pores
US9885078B2 (en) 2008-07-07 2018-02-06 Oxford Nanopore Technologies Limited Enzyme-pore constructs
US9957560B2 (en) 2011-07-25 2018-05-01 Oxford Nanopore Technologies Ltd. Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
US10006905B2 (en) 2013-03-25 2018-06-26 Katholieke Universiteit Leuven Nanopore biosensors for detection of proteins and nucleic acids
US10167503B2 (en) 2014-05-02 2019-01-01 Oxford Nanopore Technologies Ltd. Mutant pores
US10221450B2 (en) 2013-03-08 2019-03-05 Oxford Nanopore Technologies Ltd. Enzyme stalling method
US10266885B2 (en) 2014-10-07 2019-04-23 Oxford Nanopore Technologies Ltd. Mutant pores
US10385389B2 (en) 2014-01-22 2019-08-20 Oxford Nanopore Technologies Ltd. Method for attaching one or more polynucleotide binding proteins to a target polynucleotide
US10400014B2 (en) 2014-09-01 2019-09-03 Oxford Nanopore Technologies Ltd. Mutant CsgG pores
US10472673B2 (en) 2015-02-19 2019-11-12 Oxford Nanopore Technologies Ltd. Hetero-pores
US10501767B2 (en) 2013-08-16 2019-12-10 Oxford Nanopore Technologies Ltd. Polynucleotide modification methods
US10570440B2 (en) 2014-10-14 2020-02-25 Oxford Nanopore Technologies Ltd. Method for modifying a template double stranded polynucleotide using a MuA transposase
US10669578B2 (en) 2014-02-21 2020-06-02 Oxford Nanopore Technologies Ltd. Sample preparation method
US10975428B2 (en) 2016-03-02 2021-04-13 Oxford Nanopore Technologies Ltd. Mutant pore
US10976300B2 (en) 2015-12-08 2021-04-13 Katholieke Universiteit Leuven Modified nanopores, compositions comprising the same, and uses thereof
US11104709B2 (en) 2016-04-06 2021-08-31 Oxford Nanopore Technologies Ltd. Mutant pore
US11155860B2 (en) 2012-07-19 2021-10-26 Oxford Nanopore Technologies Ltd. SSB method
US11169138B2 (en) 2015-04-14 2021-11-09 Katholieke Universiteit Leuven Nanopores with internal protein adaptors
US11307192B2 (en) 2015-02-19 2022-04-19 Oxford Nanopore Technologies Plc Method for producing a hetero-oligomeric pore comprising two different monomers in a specific stiochiometric ratio
US11352664B2 (en) 2009-01-30 2022-06-07 Oxford Nanopore Technologies Plc Adaptors for nucleic acid constructs in transmembrane sequencing
US11572387B2 (en) 2017-06-30 2023-02-07 Vib Vzw Protein pores
US11649480B2 (en) 2016-05-25 2023-05-16 Oxford Nanopore Technologies Plc Method for modifying a template double stranded polynucleotide
US11725205B2 (en) 2018-05-14 2023-08-15 Oxford Nanopore Technologies Plc Methods and polynucleotides for amplifying a target polynucleotide
US12024541B2 (en) 2017-05-04 2024-07-02 Oxford Nanopore Technologies Plc Transmembrane pore consisting of two CsgG pores

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EP3029467B1 (en) 2008-09-22 2020-01-08 University of Washington Msp nanopores and related methods
BR112012013074B1 (pt) 2009-12-01 2018-09-18 Oxford Nanopore Technologies Limited instrumento de análise e módulo para realizar análise bioquímica, e, método para operar um instrumento de análise para realizar análise bioquímica
CN103370617B (zh) 2010-10-01 2015-11-25 牛津纳米孔技术有限公司 生物化学分析设备和旋转阀
WO2013041878A1 (en) 2011-09-23 2013-03-28 Oxford Nanopore Technologies Limited Analysis of a polymer comprising polymer units
JP6226869B2 (ja) 2011-10-21 2017-11-08 オックスフォード ナノポール テクノロジーズ リミテッド 酵素法
KR102086182B1 (ko) 2011-12-29 2020-03-06 옥스포드 나노포어 테크놀로지즈 리미티드 효소 방법
EP2798083B1 (en) 2011-12-29 2017-08-09 Oxford Nanopore Technologies Limited Method for characterising a polynucelotide by using a xpd helicase
EP3736339B1 (en) * 2012-02-16 2022-07-27 Oxford Nanopore Technologies plc Analysis of measurements of a polymer
AU2013291763B2 (en) 2012-07-19 2019-06-20 Oxford Nanopore Technologies Limited Modified helicases
US9797009B2 (en) 2012-07-19 2017-10-24 Oxford Nanopore Technologies Limited Enzyme construct
GB201222928D0 (en) 2012-12-19 2013-01-30 Oxford Nanopore Tech Ltd Analysis of a polynucleotide
CN103267785B (zh) * 2013-05-14 2016-04-13 西北大学 一种检测药物包裹或释放过程的单分子分析方法
GB201316849D0 (en) 2013-09-23 2013-11-06 Isis Innovation Method
CA2927726A1 (en) 2013-10-18 2015-04-23 Oxford Nanopore Technologies Limited Modified helicases for use in nucleic acid sequencing
GB201406151D0 (en) 2014-04-04 2014-05-21 Oxford Nanopore Tech Ltd Method
DK3131920T3 (da) 2014-04-16 2021-11-22 Uab Res Found Msp-nanoporer og anvendelser deraf
GB201417712D0 (en) 2014-10-07 2014-11-19 Oxford Nanopore Tech Ltd Method
CN115851894B (zh) 2014-10-16 2025-06-27 牛津楠路珀尔科技股份有限公司 聚合物的分析
WO2017203268A1 (en) 2016-05-25 2017-11-30 Oxford Nanopore Technologies Limited Method
CN106932448B (zh) * 2017-02-26 2019-06-21 西北大学 一种基于纳米孔单分子技术的手性分子识别和对映体过量检测方法
BR112022009402A2 (pt) * 2019-11-19 2022-08-09 Univ Groningen Nanoporos artificiais e usos e métodos relacionados com os mesmos

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Cited By (70)

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US8785211B2 (en) 2005-11-15 2014-07-22 Isis Innovation Limited Methods using pores
US8822160B2 (en) 2007-10-05 2014-09-02 Isis Innovation Limited Molecular adaptors
US10077471B2 (en) 2008-07-07 2018-09-18 Oxford Nanopore Technologies Ltd. Enzyme-pore constructs
US11859247B2 (en) 2008-07-07 2024-01-02 Oxford Nanopore Technologies Plc Enzyme-pore constructs
US9885078B2 (en) 2008-07-07 2018-02-06 Oxford Nanopore Technologies Limited Enzyme-pore constructs
US9447152B2 (en) 2008-07-07 2016-09-20 Oxford Nanopore Technologies Limited Base-detecting pore
US11078530B2 (en) 2008-07-07 2021-08-03 Oxford Nanopore Technologies Ltd. Enzyme-pore constructs
US9562887B2 (en) 2008-11-14 2017-02-07 Oxford University Innovation Limited Methods of enhancing translocation of charged analytes through transmembrane protein pores
US11352664B2 (en) 2009-01-30 2022-06-07 Oxford Nanopore Technologies Plc Adaptors for nucleic acid constructs in transmembrane sequencing
US11459606B2 (en) 2009-01-30 2022-10-04 Oxford Nanopore Technologies Plc Adaptors for nucleic acid constructs in transmembrane sequencing
US9222082B2 (en) 2009-01-30 2015-12-29 Oxford Nanopore Technologies Limited Hybridization linkers
US12173364B2 (en) 2009-03-25 2024-12-24 Oxford University Innovation Limited Method for sequencing a heteropolymeric target nucleic acid sequence
US10669581B2 (en) 2009-03-25 2020-06-02 Oxford University Innovation Limited Method for sequencing a heteropolymeric target nucleic acid sequence
US9732381B2 (en) 2009-03-25 2017-08-15 Oxford University Innovation Limited Method for sequencing a heteropolymeric target nucleic acid sequence
US9751915B2 (en) 2011-02-11 2017-09-05 Oxford Nanopore Technologies Ltd. Mutant pores
US11168363B2 (en) 2011-07-25 2021-11-09 Oxford Nanopore Technologies Ltd. Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
US10851409B2 (en) 2011-07-25 2020-12-01 Oxford Nanopore Technologies Ltd. Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
US10597713B2 (en) 2011-07-25 2020-03-24 Oxford Nanopore Technologies Ltd. Hairpin loop method for double strand polynucleotide sequencing using transmembrane pores
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