DK3914736T3 - Detektering af cancer, canceroprindelsesvæv og/eller en cancercelletype - Google Patents
Detektering af cancer, canceroprindelsesvæv og/eller en cancercelletype Download PDFInfo
- Publication number
- DK3914736T3 DK3914736T3 DK20710332.6T DK20710332T DK3914736T3 DK 3914736 T3 DK3914736 T3 DK 3914736T3 DK 20710332 T DK20710332 T DK 20710332T DK 3914736 T3 DK3914736 T3 DK 3914736T3
- Authority
- DK
- Denmark
- Prior art keywords
- cancer
- detection
- cell type
- tissue
- cancer cell
- Prior art date
Links
- 206010028980 Neoplasm Diseases 0.000 title 3
- 201000011510 cancer Diseases 0.000 title 3
- 238000001514 detection method Methods 0.000 title 1
Classifications
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61K—PREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
- A61K45/00—Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
-
- A—HUMAN NECESSITIES
- A61—MEDICAL OR VETERINARY SCIENCE; HYGIENE
- A61P—SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
- A61P35/00—Antineoplastic agents
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6832—Enhancement of hybridisation reaction
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
- C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
- G16B40/20—Supervised data analysis
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2523/00—Reactions characterised by treatment of reaction samples
- C12Q2523/10—Characterised by chemical treatment
- C12Q2523/125—Bisulfite(s)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2525/00—Reactions involving modified oligonucleotides, nucleic acids, or nucleotides
- C12Q2525/10—Modifications characterised by
- C12Q2525/204—Modifications characterised by specific length of the oligonucleotides
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
- C12Q2535/122—Massive parallel sequencing
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/112—Disease subtyping, staging or classification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/154—Methylation markers
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- General Health & Medical Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- General Engineering & Computer Science (AREA)
- Pathology (AREA)
- Medical Informatics (AREA)
- Oncology (AREA)
- Hospice & Palliative Care (AREA)
- Public Health (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Theoretical Computer Science (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Data Mining & Analysis (AREA)
- Epidemiology (AREA)
- Databases & Information Systems (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Evolutionary Computation (AREA)
- Bioethics (AREA)
- Software Systems (AREA)
- Artificial Intelligence (AREA)
- Veterinary Medicine (AREA)
- Animal Behavior & Ethology (AREA)
Applications Claiming Priority (4)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
US201962797170P | 2019-01-25 | 2019-01-25 | |
US201962797174P | 2019-01-25 | 2019-01-25 | |
US201962797176P | 2019-01-25 | 2019-01-25 | |
PCT/US2020/015082 WO2020154682A2 (en) | 2019-01-25 | 2020-01-24 | Detecting cancer, cancer tissue of origin, and/or a cancer cell type |
Publications (1)
Publication Number | Publication Date |
---|---|
DK3914736T3 true DK3914736T3 (da) | 2024-03-25 |
Family
ID=69780286
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
DK20710332.6T DK3914736T3 (da) | 2019-01-25 | 2020-01-24 | Detektering af cancer, canceroprindelsesvæv og/eller en cancercelletype |
Country Status (10)
Country | Link |
---|---|
US (2) | US20220090207A1 (da) |
EP (2) | EP4353834A3 (da) |
CN (1) | CN113728115A (da) |
AU (1) | AU2020212057A1 (da) |
CA (1) | CA3127762A1 (da) |
DK (1) | DK3914736T3 (da) |
FI (1) | FI3914736T3 (da) |
IL (1) | IL285126A (da) |
PT (1) | PT3914736T (da) |
WO (1) | WO2020154682A2 (da) |
Families Citing this family (14)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2020069350A1 (en) | 2018-09-27 | 2020-04-02 | Grail, Inc. | Methylation markers and targeted methylation probe panel |
EP3921445A4 (en) * | 2019-02-05 | 2022-10-26 | Grail, LLC | DETECTION OF CANCER, ORIGIN CANCER TISSUE, AND/OR A CANCER CELL TYPE |
US11869661B2 (en) | 2019-05-22 | 2024-01-09 | Grail, Llc | Systems and methods for determining whether a subject has a cancer condition using transfer learning |
CN113383085A (zh) * | 2019-11-06 | 2021-09-10 | 斯坦福大学托管董事会 | 用于分析核酸分子的方法和系统 |
EP4078594A1 (en) | 2019-12-18 | 2022-10-26 | Grail, LLC | Systems and methods for estimating cell source fractions using methylation information |
US20210292845A1 (en) | 2020-02-28 | 2021-09-23 | Grail, Inc. | Identifying methylation patterns that discriminate or indicate a cancer condition |
US20210285042A1 (en) | 2020-02-28 | 2021-09-16 | Grail, Inc. | Systems and methods for calling variants using methylation sequencing data |
CN115702457A (zh) | 2020-03-04 | 2023-02-14 | 格里尔公司 | 使用自动编码器确定癌症状态的系统和方法 |
EP4302299A1 (en) * | 2021-04-06 | 2024-01-10 | Grail, LLC | Conditional tissue of origin return for localization accuracy |
WO2022226229A1 (en) * | 2021-04-21 | 2022-10-27 | Helio Health Inc. | Cellular heterogeneity–adjusted clonal methylation (chalm): a methylation quantification method |
US11783912B2 (en) | 2021-05-05 | 2023-10-10 | The Board Of Trustees Of The Leland Stanford Junior University | Methods and systems for analyzing nucleic acid molecules |
CA3227495A1 (en) | 2021-08-05 | 2023-02-09 | Grail, Inc. | Somatic variant cooccurrence with abnormally methylated fragments |
EP4299764A1 (en) * | 2022-06-28 | 2024-01-03 | Universal Diagnostics, S.A. | Methods for detecting pancreatic cancer using dna methylation markers |
US20240136018A1 (en) * | 2022-10-19 | 2024-04-25 | Grail, Llc | Component mixture model for tissue identification in dna samples |
Family Cites Families (8)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010037001A2 (en) | 2008-09-26 | 2010-04-01 | Immune Disease Institute, Inc. | Selective oxidation of 5-methylcytosine by tet-family proteins |
WO2011127136A1 (en) | 2010-04-06 | 2011-10-13 | University Of Chicago | Composition and methods related to modification of 5-hydroxymethylcytosine (5-hmc) |
US20150259743A1 (en) * | 2013-12-31 | 2015-09-17 | Roche Nimblegen, Inc. | Methods of assessing epigenetic regulation of genome function via dna methylation status and systems and kits therefor |
WO2015116837A1 (en) | 2014-01-30 | 2015-08-06 | The Regents Of The University Of California | Methylation haplotyping for non-invasive diagnosis (monod) |
EP4234722A3 (en) * | 2014-03-31 | 2023-09-20 | Mayo Foundation for Medical Education and Research | Detecting colorectal neoplasm |
CN110325650A (zh) * | 2016-12-22 | 2019-10-11 | 夸登特健康公司 | 用于分析核酸分子的方法和系统 |
BR112019018272A2 (pt) * | 2017-03-02 | 2020-07-28 | Youhealth Oncotech, Limited | marcadores metilação para diagnosticar hepatocelular carcinoma e câncer |
EP3765637A1 (en) | 2018-03-13 | 2021-01-20 | Grail, Inc. | Anomalous fragment detection and classification |
-
2020
- 2020-01-24 EP EP23217634.7A patent/EP4353834A3/en active Pending
- 2020-01-24 EP EP20710332.6A patent/EP3914736B1/en active Active
- 2020-01-24 CN CN202080023806.6A patent/CN113728115A/zh active Pending
- 2020-01-24 PT PT207103326T patent/PT3914736T/pt unknown
- 2020-01-24 CA CA3127762A patent/CA3127762A1/en active Pending
- 2020-01-24 WO PCT/US2020/015082 patent/WO2020154682A2/en unknown
- 2020-01-24 FI FIEP20710332.6T patent/FI3914736T3/fi active
- 2020-01-24 DK DK20710332.6T patent/DK3914736T3/da active
- 2020-01-24 AU AU2020212057A patent/AU2020212057A1/en active Pending
-
2021
- 2021-07-23 US US17/384,251 patent/US20220090207A1/en active Pending
- 2021-07-23 US US17/384,241 patent/US20220119890A1/en active Pending
- 2021-07-25 IL IL285126A patent/IL285126A/en unknown
Also Published As
Publication number | Publication date |
---|---|
FI3914736T3 (fi) | 2024-03-19 |
EP3914736B1 (en) | 2023-12-20 |
US20220119890A1 (en) | 2022-04-21 |
PT3914736T (pt) | 2024-03-27 |
EP4353834A2 (en) | 2024-04-17 |
WO2020154682A2 (en) | 2020-07-30 |
EP4353834A3 (en) | 2024-05-01 |
AU2020212057A1 (en) | 2021-08-26 |
US20220090207A1 (en) | 2022-03-24 |
IL285126A (en) | 2021-09-30 |
CN113728115A (zh) | 2021-11-30 |
WO2020154682A3 (en) | 2020-10-01 |
EP3914736A2 (en) | 2021-12-01 |
CA3127762A1 (en) | 2020-07-30 |
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