DK3082056T3 - Fremgangsmåde og elektronisk system til forudsigelse af mindst en fitnessværdi af et protein, relateret computerprogramprodukt - Google Patents
Fremgangsmåde og elektronisk system til forudsigelse af mindst en fitnessværdi af et protein, relateret computerprogramproduktInfo
- Publication number
- DK3082056T3 DK3082056T3 DK15305552.0T DK15305552T DK3082056T3 DK 3082056 T3 DK3082056 T3 DK 3082056T3 DK 15305552 T DK15305552 T DK 15305552T DK 3082056 T3 DK3082056 T3 DK 3082056T3
- Authority
- DK
- Denmark
- Prior art keywords
- predicting
- computer program
- program product
- electronic system
- fitness value
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/50—Mutagenesis
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2/00—Peptides of undefined number of amino acids; Derivatives thereof
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1089—Design, preparation, screening or analysis of libraries using computer algorithms
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/10—Libraries containing peptides or polypeptides, or derivatives thereof
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
- G06F17/10—Complex mathematical operations
- G06F17/14—Fourier, Walsh or analogous domain transformations, e.g. Laplace, Hilbert, Karhunen-Loeve, transforms
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
- G06F17/10—Complex mathematical operations
- G06F17/14—Fourier, Walsh or analogous domain transformations, e.g. Laplace, Hilbert, Karhunen-Loeve, transforms
- G06F17/141—Discrete Fourier transforms
- G06F17/142—Fast Fourier transforms, e.g. using a Cooley-Tukey type algorithm
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Landscapes
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Mathematical Physics (AREA)
- General Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biotechnology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- Evolutionary Biology (AREA)
- Medical Informatics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Molecular Biology (AREA)
- Mathematical Analysis (AREA)
- Computational Mathematics (AREA)
- Mathematical Optimization (AREA)
- Pure & Applied Mathematics (AREA)
- Data Mining & Analysis (AREA)
- General Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Algebra (AREA)
- Databases & Information Systems (AREA)
- Software Systems (AREA)
- Biochemistry (AREA)
- Medicinal Chemistry (AREA)
- Discrete Mathematics (AREA)
- Biomedical Technology (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Chemical Kinetics & Catalysis (AREA)
- General Chemical & Material Sciences (AREA)
- Crystallography & Structural Chemistry (AREA)
- Plant Pathology (AREA)
Applications Claiming Priority (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP15305552.0A EP3082056B2 (en) | 2015-04-14 | 2015-04-14 | Method and electronic system for predicting at least one fitness value of a protein, related computer program product |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| DK3082056T3 true DK3082056T3 (da) | 2019-07-01 |
| DK3082056T4 DK3082056T4 (da) | 2022-05-02 |
Family
ID=52875643
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| DK15305552.0T DK3082056T4 (da) | 2015-04-14 | 2015-04-14 | Fremgangsmåde og elektronisk system til forudsigelse af mindst en fitnessværdi af et protein, relateret computerprogramprodukt |
Country Status (12)
| Country | Link |
|---|---|
| US (1) | US11749377B2 (da) |
| EP (1) | EP3082056B2 (da) |
| JP (1) | JP6744909B2 (da) |
| KR (1) | KR20170137106A (da) |
| CN (2) | CN114882947A (da) |
| AU (1) | AU2016247474B2 (da) |
| CA (1) | CA2982608C (da) |
| DK (1) | DK3082056T4 (da) |
| IL (1) | IL254976B (da) |
| MX (1) | MX2017013195A (da) |
| SG (1) | SG11201708457VA (da) |
| WO (1) | WO2016166253A1 (da) |
Families Citing this family (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050084907A1 (en) | 2002-03-01 | 2005-04-21 | Maxygen, Inc. | Methods, systems, and software for identifying functional biomolecules |
| US20210183469A9 (en) * | 2018-03-12 | 2021-06-17 | Massachusetts Institute Of Technology | Computational platform for in silico combinatorial sequence space exploration and artificial evolution of peptides |
| EP3598327B1 (en) * | 2018-07-20 | 2021-05-05 | Peaccel | Method and electronic system for predicting at least one fitness value of a protein via an extended numerical sequence, related computer program product |
| CN115240763B (zh) * | 2022-07-06 | 2024-06-11 | 上海人工智能创新中心 | 基于无偏课程学习的蛋白质热力学稳定性预测方法 |
| EP4446411A1 (en) | 2023-04-14 | 2024-10-16 | Peaccel | Variant subtilisin proteases |
| CN117116336B (zh) * | 2023-10-18 | 2024-01-23 | 深圳新锐基因科技有限公司 | 基于内部原子波动改善蛋白结构柔性弱点的方法和装置 |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5538897A (en) * | 1994-03-14 | 1996-07-23 | University Of Washington | Use of mass spectrometry fragmentation patterns of peptides to identify amino acid sequences in databases |
| DE10021689A1 (de) * | 2000-05-05 | 2001-12-06 | Biotechnolog Forschung Gmbh | Verfahren zur Untersuchung von Makromolekülen |
| US6728642B2 (en) * | 2001-03-29 | 2004-04-27 | E. I. Du Pont De Nemours And Company | Method of non-linear analysis of biological sequence data |
| JP2008076406A (ja) * | 2002-04-26 | 2008-04-03 | Ajinomoto Co Inc | タンパク質構造解析方法、タンパク質構造解析装置、プログラム、および、記録媒体 |
| US20090055147A1 (en) * | 2004-06-25 | 2009-02-26 | National Inst. Of Adv. Industrial Science And Tech | Cell network analysis system |
| CN101124581A (zh) * | 2005-03-03 | 2008-02-13 | 伊利诺斯大学理事会 | 使用新的数据库检索模式鉴别和鉴定蛋白质 |
| WO2008065180A1 (en) * | 2006-11-30 | 2008-06-05 | Tibotec Pharmaceuticals Ltd. | Phenotype prediction method |
| WO2008129458A1 (en) * | 2007-04-18 | 2008-10-30 | Koninklijke Philips Electronics N.V. | A method for data mining dna frequency based spectra |
| WO2011069997A2 (en) * | 2009-12-09 | 2011-06-16 | Iti Scotland Limited | Detecting analytes |
| CN103473483A (zh) * | 2013-10-07 | 2013-12-25 | 谢华林 | 一种蛋白质结构与功能的在线预测方法 |
| EP3598327B1 (en) * | 2018-07-20 | 2021-05-05 | Peaccel | Method and electronic system for predicting at least one fitness value of a protein via an extended numerical sequence, related computer program product |
-
2015
- 2015-04-14 EP EP15305552.0A patent/EP3082056B2/en active Active
- 2015-04-14 DK DK15305552.0T patent/DK3082056T4/da active
-
2016
- 2016-04-14 MX MX2017013195A patent/MX2017013195A/es unknown
- 2016-04-14 SG SG11201708457VA patent/SG11201708457VA/en unknown
- 2016-04-14 WO PCT/EP2016/058287 patent/WO2016166253A1/en active Application Filing
- 2016-04-14 AU AU2016247474A patent/AU2016247474B2/en active Active
- 2016-04-14 US US15/565,893 patent/US11749377B2/en active Active
- 2016-04-14 CN CN202210595983.2A patent/CN114882947A/zh active Pending
- 2016-04-14 CN CN201680027558.6A patent/CN107924429B/zh active Active
- 2016-04-14 KR KR1020177029593A patent/KR20170137106A/ko active IP Right Grant
- 2016-04-14 JP JP2018505535A patent/JP6744909B2/ja active Active
- 2016-04-14 CA CA2982608A patent/CA2982608C/en active Active
-
2017
- 2017-10-10 IL IL254976A patent/IL254976B/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| US11749377B2 (en) | 2023-09-05 |
| KR20170137106A (ko) | 2017-12-12 |
| US20180096099A1 (en) | 2018-04-05 |
| IL254976B (en) | 2021-10-31 |
| EP3082056B1 (en) | 2019-03-27 |
| IL254976A0 (en) | 2017-12-31 |
| CA2982608A1 (en) | 2016-10-20 |
| SG11201708457VA (en) | 2017-11-29 |
| EP3082056A1 (en) | 2016-10-19 |
| JP2018517219A (ja) | 2018-06-28 |
| MX2017013195A (es) | 2018-05-22 |
| EP3082056B2 (en) | 2022-02-09 |
| CN107924429B (zh) | 2022-12-09 |
| AU2016247474A1 (en) | 2017-11-02 |
| CA2982608C (en) | 2023-12-05 |
| DK3082056T4 (da) | 2022-05-02 |
| CN107924429A (zh) | 2018-04-17 |
| JP6744909B2 (ja) | 2020-08-19 |
| BR112017022196A2 (pt) | 2019-04-16 |
| AU2016247474B2 (en) | 2020-07-30 |
| CN114882947A (zh) | 2022-08-09 |
| WO2016166253A1 (en) | 2016-10-20 |
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