SG11201708457VA - Method and electronic system for predicting at least one fitness value of a protein, related computer program product - Google Patents
Method and electronic system for predicting at least one fitness value of a protein, related computer program productInfo
- Publication number
- SG11201708457VA SG11201708457VA SG11201708457VA SG11201708457VA SG11201708457VA SG 11201708457V A SG11201708457V A SG 11201708457VA SG 11201708457V A SG11201708457V A SG 11201708457VA SG 11201708457V A SG11201708457V A SG 11201708457VA SG 11201708457V A SG11201708457V A SG 11201708457VA
- Authority
- SG
- Singapore
- Prior art keywords
- predicting
- protein
- computer program
- program product
- electronic system
- Prior art date
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/50—Mutagenesis
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2/00—Peptides of undefined number of amino acids; Derivatives thereof
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N15/00—Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
- C12N15/09—Recombinant DNA-technology
- C12N15/10—Processes for the isolation, preparation or purification of DNA or RNA
- C12N15/1034—Isolating an individual clone by screening libraries
- C12N15/1089—Design, preparation, screening or analysis of libraries using computer algorithms
-
- C—CHEMISTRY; METALLURGY
- C40—COMBINATORIAL TECHNOLOGY
- C40B—COMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
- C40B40/00—Libraries per se, e.g. arrays, mixtures
- C40B40/04—Libraries containing only organic compounds
- C40B40/10—Libraries containing peptides or polypeptides, or derivatives thereof
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
- G06F17/10—Complex mathematical operations
- G06F17/14—Fourier, Walsh or analogous domain transformations, e.g. Laplace, Hilbert, Karhunen-Loeve, transforms
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F17/00—Digital computing or data processing equipment or methods, specially adapted for specific functions
- G06F17/10—Complex mathematical operations
- G06F17/14—Fourier, Walsh or analogous domain transformations, e.g. Laplace, Hilbert, Karhunen-Loeve, transforms
- G06F17/141—Discrete Fourier transforms
- G06F17/142—Fast Fourier transforms, e.g. using a Cooley-Tukey type algorithm
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
- G16B30/10—Sequence alignment; Homology search
Landscapes
- Physics & Mathematics (AREA)
- Engineering & Computer Science (AREA)
- Life Sciences & Earth Sciences (AREA)
- Health & Medical Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Theoretical Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Mathematical Physics (AREA)
- General Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Biotechnology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Analytical Chemistry (AREA)
- Genetics & Genomics (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Evolutionary Biology (AREA)
- Medical Informatics (AREA)
- Molecular Biology (AREA)
- Pure & Applied Mathematics (AREA)
- Data Mining & Analysis (AREA)
- Mathematical Optimization (AREA)
- Mathematical Analysis (AREA)
- Computational Mathematics (AREA)
- General Engineering & Computer Science (AREA)
- Organic Chemistry (AREA)
- Software Systems (AREA)
- Databases & Information Systems (AREA)
- Algebra (AREA)
- Biochemistry (AREA)
- Medicinal Chemistry (AREA)
- Discrete Mathematics (AREA)
- Zoology (AREA)
- Biomedical Technology (AREA)
- Wood Science & Technology (AREA)
- Microbiology (AREA)
- Plant Pathology (AREA)
- Crystallography & Structural Chemistry (AREA)
- Chemical Kinetics & Catalysis (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| EP15305552.0A EP3082056B2 (en) | 2015-04-14 | 2015-04-14 | Method and electronic system for predicting at least one fitness value of a protein, related computer program product |
| PCT/EP2016/058287 WO2016166253A1 (en) | 2015-04-14 | 2016-04-14 | Method and electronic system for predicting at least one fitness value of a protein, related computer program product |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| SG11201708457VA true SG11201708457VA (en) | 2017-11-29 |
Family
ID=52875643
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| SG11201708457VA SG11201708457VA (en) | 2015-04-14 | 2016-04-14 | Method and electronic system for predicting at least one fitness value of a protein, related computer program product |
Country Status (12)
| Country | Link |
|---|---|
| US (1) | US11749377B2 (en) |
| EP (1) | EP3082056B2 (en) |
| JP (1) | JP6744909B2 (en) |
| KR (1) | KR20170137106A (en) |
| CN (2) | CN107924429B (en) |
| AU (1) | AU2016247474B2 (en) |
| CA (1) | CA2982608C (en) |
| DK (1) | DK3082056T4 (en) |
| IL (1) | IL254976B (en) |
| MX (1) | MX2017013195A (en) |
| SG (1) | SG11201708457VA (en) |
| WO (1) | WO2016166253A1 (en) |
Families Citing this family (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050084907A1 (en) | 2002-03-01 | 2005-04-21 | Maxygen, Inc. | Methods, systems, and software for identifying functional biomolecules |
| WO2019178056A1 (en) * | 2018-03-12 | 2019-09-19 | Massachusetts Institute Of Technology | Computational platform for in silico combinatorial sequence space exploration and artificial evolution of peptides |
| DK3598327T3 (en) * | 2018-07-20 | 2021-07-05 | Peaccel | Method and electronic system for predicting at least one fitness value of a protein via an extended numerical sequence, related computer software product |
| CN115240763B (en) * | 2022-07-06 | 2024-06-11 | 上海人工智能创新中心 | Protein thermodynamic stability prediction method based on unbiased course learning |
| EP4446411A1 (en) | 2023-04-14 | 2024-10-16 | Peaccel | Variant subtilisin proteases |
| CN117116336B (en) * | 2023-10-18 | 2024-01-23 | 深圳新锐基因科技有限公司 | Method and device for improving flexibility weakness of protein structure based on internal atomic fluctuation |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6017693A (en) * | 1994-03-14 | 2000-01-25 | University Of Washington | Identification of nucleotides, amino acids, or carbohydrates by mass spectrometry |
| DE10021689A1 (en) | 2000-05-05 | 2001-12-06 | Biotechnolog Forschung Gmbh | Procedure for the study of macromolecules |
| US6728642B2 (en) * | 2001-03-29 | 2004-04-27 | E. I. Du Pont De Nemours And Company | Method of non-linear analysis of biological sequence data |
| JP2008076406A (en) * | 2002-04-26 | 2008-04-03 | Ajinomoto Co Inc | Method for protein structure analysis, protein structure analyzer, program, and recording medium |
| WO2006001397A1 (en) * | 2004-06-25 | 2006-01-05 | National Institute Of Advanced Industrial Science And Technology | Cell network analysis system |
| CN101124581A (en) * | 2005-03-03 | 2008-02-13 | 伊利诺斯大学理事会 | Identification and characterization of proteins using new database search modes |
| US8285666B2 (en) * | 2006-11-30 | 2012-10-09 | Tibotec Pharmaceuticals Ltd | Phenotype prediction method |
| WO2008129458A1 (en) | 2007-04-18 | 2008-10-30 | Koninklijke Philips Electronics N.V. | A method for data mining dna frequency based spectra |
| US20120285829A1 (en) * | 2009-12-09 | 2012-11-15 | Iti Scotland Limited | Detecting analytes |
| CN103473483A (en) * | 2013-10-07 | 2013-12-25 | 谢华林 | Online predicting method for structure and function of protein |
| DK3598327T3 (en) * | 2018-07-20 | 2021-07-05 | Peaccel | Method and electronic system for predicting at least one fitness value of a protein via an extended numerical sequence, related computer software product |
-
2015
- 2015-04-14 DK DK15305552.0T patent/DK3082056T4/en active
- 2015-04-14 EP EP15305552.0A patent/EP3082056B2/en active Active
-
2016
- 2016-04-14 JP JP2018505535A patent/JP6744909B2/en active Active
- 2016-04-14 MX MX2017013195A patent/MX2017013195A/en unknown
- 2016-04-14 CN CN201680027558.6A patent/CN107924429B/en active Active
- 2016-04-14 SG SG11201708457VA patent/SG11201708457VA/en unknown
- 2016-04-14 KR KR1020177029593A patent/KR20170137106A/en active IP Right Grant
- 2016-04-14 AU AU2016247474A patent/AU2016247474B2/en active Active
- 2016-04-14 CA CA2982608A patent/CA2982608C/en active Active
- 2016-04-14 US US15/565,893 patent/US11749377B2/en active Active
- 2016-04-14 CN CN202210595983.2A patent/CN114882947A/en active Pending
- 2016-04-14 WO PCT/EP2016/058287 patent/WO2016166253A1/en active Application Filing
-
2017
- 2017-10-10 IL IL254976A patent/IL254976B/en unknown
Also Published As
| Publication number | Publication date |
|---|---|
| CA2982608C (en) | 2023-12-05 |
| AU2016247474B2 (en) | 2020-07-30 |
| EP3082056B2 (en) | 2022-02-09 |
| AU2016247474A1 (en) | 2017-11-02 |
| MX2017013195A (en) | 2018-05-22 |
| KR20170137106A (en) | 2017-12-12 |
| US20180096099A1 (en) | 2018-04-05 |
| WO2016166253A1 (en) | 2016-10-20 |
| CN114882947A (en) | 2022-08-09 |
| JP2018517219A (en) | 2018-06-28 |
| DK3082056T3 (en) | 2019-07-01 |
| US11749377B2 (en) | 2023-09-05 |
| JP6744909B2 (en) | 2020-08-19 |
| CN107924429B (en) | 2022-12-09 |
| IL254976A0 (en) | 2017-12-31 |
| BR112017022196A2 (en) | 2019-04-16 |
| EP3082056A1 (en) | 2016-10-19 |
| CN107924429A (en) | 2018-04-17 |
| EP3082056B1 (en) | 2019-03-27 |
| IL254976B (en) | 2021-10-31 |
| DK3082056T4 (en) | 2022-05-02 |
| CA2982608A1 (en) | 2016-10-20 |
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