DK1664345T3 - OLA-baserede fremgangsmåder til detektion af target-nukleinsyresekvenser - Google Patents
OLA-baserede fremgangsmåder til detektion af target-nukleinsyresekvenserInfo
- Publication number
- DK1664345T3 DK1664345T3 DK04774910.6T DK04774910T DK1664345T3 DK 1664345 T3 DK1664345 T3 DK 1664345T3 DK 04774910 T DK04774910 T DK 04774910T DK 1664345 T3 DK1664345 T3 DK 1664345T3
- Authority
- DK
- Denmark
- Prior art keywords
- ola
- nucleic acid
- acid sequences
- target nucleic
- based methods
- Prior art date
Links
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6813—Hybridisation assays
- C12Q1/6827—Hybridisation assays for detection of mutation or polymorphism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6862—Ligase chain reaction [LCR]
Landscapes
- Chemical & Material Sciences (AREA)
- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Microbiology (AREA)
- Biochemistry (AREA)
- Physics & Mathematics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Immunology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Applications Claiming Priority (4)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| NL0300613 | 2003-09-02 | ||
| EP04076618A EP1602733A1 (en) | 2004-06-02 | 2004-06-02 | Detection of target nucleotide sequences using an asymmetric oligonucleotide ligation assay |
| US58271604P | 2004-06-25 | 2004-06-25 | |
| PCT/NL2004/000604 WO2005021794A2 (en) | 2003-09-02 | 2004-08-31 | Ola-based methods for the detection of target nucleic acid sequences |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| DK1664345T3 true DK1664345T3 (da) | 2015-06-22 |
Family
ID=34279337
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| DK04774910.6T DK1664345T3 (da) | 2003-09-02 | 2004-08-31 | OLA-baserede fremgangsmåder til detektion af target-nukleinsyresekvenser |
Country Status (7)
| Country | Link |
|---|---|
| US (1) | US8808991B2 (da) |
| EP (1) | EP1664345B1 (da) |
| JP (1) | JP5117722B2 (da) |
| CA (1) | CA2537134C (da) |
| DK (1) | DK1664345T3 (da) |
| ES (1) | ES2539784T3 (da) |
| WO (1) | WO2005021794A2 (da) |
Families Citing this family (64)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| JP5237126B2 (ja) * | 2006-03-01 | 2013-07-17 | キージーン ナムローゼ フェンノートシャップ | ライゲーションアッセイを用いてハイスループットシークエンスに基づき遺伝子関連配列を検出する方法 |
| US8999634B2 (en) * | 2007-04-27 | 2015-04-07 | Quest Diagnostics Investments Incorporated | Nucleic acid detection combining amplification with fragmentation |
| US9085798B2 (en) | 2009-04-30 | 2015-07-21 | Prognosys Biosciences, Inc. | Nucleic acid constructs and methods of use |
| US9631227B2 (en) | 2009-07-06 | 2017-04-25 | Trilink Biotechnologies, Inc. | Chemically modified ligase cofactors, donors and acceptors |
| CA2767408C (en) * | 2009-07-06 | 2018-01-23 | Trilink Biotechnologies | Chemically modified ligase cofactors, donors and acceptors |
| US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
| PL2556171T3 (pl) | 2010-04-05 | 2016-04-29 | Prognosys Biosciences Inc | Oznaczenia biologiczne kodowane przestrzennie |
| US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
| US20120034603A1 (en) * | 2010-08-06 | 2012-02-09 | Tandem Diagnostics, Inc. | Ligation-based detection of genetic variants |
| US20130040375A1 (en) * | 2011-08-08 | 2013-02-14 | Tandem Diagnotics, Inc. | Assay systems for genetic analysis |
| KR101322880B1 (ko) * | 2011-03-04 | 2013-10-29 | 한국과학기술원 | Ｓｄｌ－ｐｃｒ을 이용한 유전자 분석방법 |
| GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
| US9476095B2 (en) * | 2011-04-15 | 2016-10-25 | The Johns Hopkins University | Safe sequencing system |
| DK2729580T3 (da) | 2011-07-08 | 2015-12-14 | Keygene Nv | Sekvensbaseret genotypebestemmelse baseret på oligonukleotidligeringsassays |
| WO2013106807A1 (en) | 2012-01-13 | 2013-07-18 | Curry John D | Scalable characterization of nucleic acids by parallel sequencing |
| EP3447495B2 (en) | 2012-10-29 | 2024-03-13 | The Johns Hopkins University | Papanicolaou test for ovarian and endometrial cancers |
| CN118240918A (zh) | 2013-06-25 | 2024-06-25 | 普罗格诺西斯生物科学公司 | 采用微流控装置的空间编码生物分析 |
| US20150141257A1 (en) * | 2013-08-02 | 2015-05-21 | Roche Nimblegen, Inc. | Sequence capture method using specialized capture probes (heatseq) |
| EP4119677B1 (en) | 2015-04-10 | 2023-06-28 | Spatial Transcriptomics AB | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
| US11286531B2 (en) | 2015-08-11 | 2022-03-29 | The Johns Hopkins University | Assaying ovarian cyst fluid |
| US11118216B2 (en) | 2015-09-08 | 2021-09-14 | Affymetrix, Inc. | Nucleic acid analysis by joining barcoded polynucleotide probes |
| WO2017046192A1 (de) * | 2015-09-18 | 2017-03-23 | Biotype Diagnostic Gmbh | Bestätigungstest für primäre nukleinsäure-amplifikate in einem kontinuierlichen reaktionsansatz und unmittelbare auswertung mittels elektrophoretischer verfahren |
| EP3347497A4 (en) * | 2016-01-31 | 2019-01-23 | Affymetrix, Inc. | NUCLEIC ACID ANALYSIS BY ASSEMBLING POLYNUCLEOTIDE BARCODE PROBES |
| WO2019121603A1 (en) | 2017-12-18 | 2019-06-27 | Keygene N.V. | Chemical mutagenesis of cassava |
| AU2019207910A1 (en) * | 2018-01-12 | 2019-11-21 | Stem Arts Projects, Llc | Reaction condition composition for circularizing oligonucleotide probes |
| US11639928B2 (en) | 2018-02-22 | 2023-05-02 | 10X Genomics, Inc. | Methods and systems for characterizing analytes from individual cells or cell populations |
| EP3755812A1 (en) * | 2018-02-22 | 2020-12-30 | 10X Genomics, Inc. | Ligation mediated analysis of nucleic acids |
| CN112292460A (zh) | 2018-06-12 | 2021-01-29 | 主基因有限公司 | 核酸扩增方法 |
| US11519033B2 (en) | 2018-08-28 | 2022-12-06 | 10X Genomics, Inc. | Method for transposase-mediated spatial tagging and analyzing genomic DNA in a biological sample |
| US11649485B2 (en) | 2019-01-06 | 2023-05-16 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| US11926867B2 (en) | 2019-01-06 | 2024-03-12 | 10X Genomics, Inc. | Generating capture probes for spatial analysis |
| AU2020225760A1 (en) | 2019-02-21 | 2021-08-19 | Keygene N.V. | Genotyping of polyploids |
| JP2022535029A (ja) | 2019-05-30 | 2022-08-04 | ラピッド ゲノミクス エルエルシー | 標的遺伝子領域の柔軟かつハイスループット配列決定 |
| EP3976820A1 (en) | 2019-05-30 | 2022-04-06 | 10X Genomics, Inc. | Methods of detecting spatial heterogeneity of a biological sample |
| EP4025711A2 (en) | 2019-11-08 | 2022-07-13 | 10X Genomics, Inc. | Enhancing specificity of analyte binding |
| WO2021091611A1 (en) | 2019-11-08 | 2021-05-14 | 10X Genomics, Inc. | Spatially-tagged analyte capture agents for analyte multiplexing |
| ES2946357T3 (es) | 2019-12-23 | 2023-07-17 | 10X Genomics Inc | Métodos para el análisis espacial usando ligación con molde de ARN |
| US11732299B2 (en) | 2020-01-21 | 2023-08-22 | 10X Genomics, Inc. | Spatial assays with perturbed cells |
| US11702693B2 (en) | 2020-01-21 | 2023-07-18 | 10X Genomics, Inc. | Methods for printing cells and generating arrays of barcoded cells |
| US11821035B1 (en) | 2020-01-29 | 2023-11-21 | 10X Genomics, Inc. | Compositions and methods of making gene expression libraries |
| US11898205B2 (en) | 2020-02-03 | 2024-02-13 | 10X Genomics, Inc. | Increasing capture efficiency of spatial assays |
| US11732300B2 (en) | 2020-02-05 | 2023-08-22 | 10X Genomics, Inc. | Increasing efficiency of spatial analysis in a biological sample |
| US11835462B2 (en) | 2020-02-11 | 2023-12-05 | 10X Genomics, Inc. | Methods and compositions for partitioning a biological sample |
| US11891654B2 (en) | 2020-02-24 | 2024-02-06 | 10X Genomics, Inc. | Methods of making gene expression libraries |
| US11926863B1 (en) | 2020-02-27 | 2024-03-12 | 10X Genomics, Inc. | Solid state single cell method for analyzing fixed biological cells |
| US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
| ES2965354T3 (es) | 2020-04-22 | 2024-04-12 | 10X Genomics Inc | Métodos para análisis espacial que usan eliminación de ARN elegido como diana |
| WO2021237087A1 (en) | 2020-05-22 | 2021-11-25 | 10X Genomics, Inc. | Spatial analysis to detect sequence variants |
| EP4153775A1 (en) | 2020-05-22 | 2023-03-29 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
| WO2021242834A1 (en) | 2020-05-26 | 2021-12-02 | 10X Genomics, Inc. | Method for resetting an array |
| WO2021247568A1 (en) | 2020-06-02 | 2021-12-09 | 10X Genomics, Inc. | Spatial trancriptomics for antigen-receptors |
| WO2021247543A2 (en) | 2020-06-02 | 2021-12-09 | 10X Genomics, Inc. | Nucleic acid library methods |
| WO2021252499A1 (en) | 2020-06-08 | 2021-12-16 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
| WO2021252591A1 (en) | 2020-06-10 | 2021-12-16 | 10X Genomics, Inc. | Methods for determining a location of an analyte in a biological sample |
| WO2021263111A1 (en) | 2020-06-25 | 2021-12-30 | 10X Genomics, Inc. | Spatial analysis of dna methylation |
| US11981960B1 (en) | 2020-07-06 | 2024-05-14 | 10X Genomics, Inc. | Spatial analysis utilizing degradable hydrogels |
| US11761038B1 (en) | 2020-07-06 | 2023-09-19 | 10X Genomics, Inc. | Methods for identifying a location of an RNA in a biological sample |
| US11981958B1 (en) | 2020-08-20 | 2024-05-14 | 10X Genomics, Inc. | Methods for spatial analysis using DNA capture |
| US11926822B1 (en) | 2020-09-23 | 2024-03-12 | 10X Genomics, Inc. | Three-dimensional spatial analysis |
| US11827935B1 (en) | 2020-11-19 | 2023-11-28 | 10X Genomics, Inc. | Methods for spatial analysis using rolling circle amplification and detection probes |
| WO2022140028A1 (en) | 2020-12-21 | 2022-06-30 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
| EP4298244A1 (en) | 2021-02-23 | 2024-01-03 | 10X Genomics, Inc. | Probe-based analysis of nucleic acids and proteins |
| EP4301870A1 (en) | 2021-03-18 | 2024-01-10 | 10X Genomics, Inc. | Multiplex capture of gene and protein expression from a biological sample |
| EP4196605A1 (en) | 2021-09-01 | 2023-06-21 | 10X Genomics, Inc. | Methods, compositions, and kits for blocking a capture probe on a spatial array |
Family Cites Families (11)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US5424413A (en) * | 1992-01-22 | 1995-06-13 | Gen-Probe Incorporated | Branched nucleic acid probes |
| US5473060A (en) * | 1993-07-02 | 1995-12-05 | Lynx Therapeutics, Inc. | Oligonucleotide clamps having diagnostic applications |
| WO1996015271A1 (en) | 1994-11-16 | 1996-05-23 | Abbott Laboratories | Multiplex ligations-dependent amplification |
| EP1736554B1 (en) | 1996-05-29 | 2013-10-09 | Cornell Research Foundation, Inc. | Detection of nucleic acid sequence differences using coupled ligase detection and polymerase chain reactions |
| CA2379132C (en) * | 1999-07-14 | 2011-05-31 | Packard Bioscience Company | Method for multiplexed analysis of a plurality of target nucleic acid sequences in a sample |
| US6221603B1 (en) | 2000-02-04 | 2001-04-24 | Molecular Dynamics, Inc. | Rolling circle amplification assay for nucleic acid analysis |
| EP1130113A1 (en) | 2000-02-15 | 2001-09-05 | Johannes Petrus Schouten | Multiplex ligation dependent amplification assay |
| CA2426824A1 (en) * | 2000-10-24 | 2002-07-25 | The Board Of Trustees Of The Leland Stanford Junior University | Direct multiplex characterization of genomic dna |
| GB0029617D0 (en) | 2000-12-05 | 2001-01-17 | Norchip As | Ligand detection method |
| EP1319718A1 (en) | 2001-12-14 | 2003-06-18 | Keygene N.V. | High throughput analysis and detection of multiple target sequences |
| WO2003060163A2 (en) | 2001-12-28 | 2003-07-24 | Keygene N.V. | Discrimination and detection of target nucleotide sequences using mass spectrometry |
-
2004
- 2004-08-31 US US10/570,249 patent/US8808991B2/en not_active Expired - Fee Related
- 2004-08-31 WO PCT/NL2004/000604 patent/WO2005021794A2/en active Application Filing
- 2004-08-31 EP EP04774910.6A patent/EP1664345B1/en not_active Expired - Fee Related
- 2004-08-31 ES ES04774910.6T patent/ES2539784T3/es active Active
- 2004-08-31 CA CA2537134A patent/CA2537134C/en not_active Expired - Fee Related
- 2004-08-31 JP JP2006525286A patent/JP5117722B2/ja not_active Expired - Fee Related
- 2004-08-31 DK DK04774910.6T patent/DK1664345T3/da active
Also Published As
| Publication number | Publication date |
|---|---|
| JP2007517497A (ja) | 2007-07-05 |
| JP5117722B2 (ja) | 2013-01-16 |
| ES2539784T3 (es) | 2015-07-06 |
| CA2537134C (en) | 2014-08-19 |
| US8808991B2 (en) | 2014-08-19 |
| EP1664345B1 (en) | 2015-04-01 |
| US20070269805A1 (en) | 2007-11-22 |
| EP1664345A2 (en) | 2006-06-07 |
| CA2537134A1 (en) | 2005-03-10 |
| WO2005021794A3 (en) | 2005-05-19 |
| WO2005021794A2 (en) | 2005-03-10 |
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