CN1360057A - 一种基于重复序列识别的全基因组测序数据的拼接方法 - Google Patents
一种基于重复序列识别的全基因组测序数据的拼接方法 Download PDFInfo
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- CN1360057A CN1360057A CN 01134851 CN01134851A CN1360057A CN 1360057 A CN1360057 A CN 1360057A CN 01134851 CN01134851 CN 01134851 CN 01134851 A CN01134851 A CN 01134851A CN 1360057 A CN1360057 A CN 1360057A
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Abstract
Description
测序覆盖度 | 2X | 4X | 6X |
重复序列判断标 | 出现次数7以上 | 出现次数11以上 | 出现次数13以上 |
插入片段长度(kb) | 3 | 8 | 20 | 50 |
覆盖洞下限(kb) | 0.6 | 1.6 | 4 | 10 |
覆盖洞上限(kb) | 1.8 | 4.8 | 12 | 30 |
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Cited By (10)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010066116A1 (zh) * | 2008-12-12 | 2010-06-17 | 深圳华大基因研究院 | 一种片段连接支架的构建方法、系统和基因组测序设备 |
WO2010066114A1 (zh) * | 2008-12-12 | 2010-06-17 | 深圳华大基因研究院 | 一种测序序列纠错方法、系统及基因组装设备 |
CN102732598A (zh) * | 2011-04-11 | 2012-10-17 | 陈先锋 | 一种全基因组dna序列拼接测序方法 |
CN102789553A (zh) * | 2012-07-23 | 2012-11-21 | 中国水产科学研究院 | 利用长转录组测序结果装配基因组的方法及装置 |
CN102867134A (zh) * | 2012-08-16 | 2013-01-09 | 盛司潼 | 一种对基因序列片段进行拼接的系统和方法 |
WO2013078624A1 (zh) * | 2011-11-29 | 2013-06-06 | 深圳华大基因科技有限公司 | 基于核酸序列的重复特征识别的方法及其装置 |
CN101751517B (zh) * | 2008-12-12 | 2014-02-26 | 深圳华大基因科技服务有限公司 | 一种基因组短序列映射的快速处理方法及系统 |
CN104017883A (zh) * | 2014-06-18 | 2014-09-03 | 深圳华大基因科技服务有限公司 | 组装基因组序列的方法和系统 |
CN104794371A (zh) * | 2015-04-29 | 2015-07-22 | 深圳华大基因研究院 | 检测逆转座子插入多态性的方法和装置 |
CN105631242A (zh) * | 2015-12-25 | 2016-06-01 | 中国农业大学 | 一种利用全基因组测序数据鉴定转基因事件的方法 |
-
2001
- 2001-11-16 CN CNB011348518A patent/CN1169967C/zh not_active Expired - Lifetime
Cited By (18)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US8751165B2 (en) | 2008-12-12 | 2014-06-10 | Bgi Tech Solutions Co., Ltd. | Error correcting method of test sequence, corresponding system and gene assembly equipment |
WO2010066114A1 (zh) * | 2008-12-12 | 2010-06-17 | 深圳华大基因研究院 | 一种测序序列纠错方法、系统及基因组装设备 |
CN101457253B (zh) * | 2008-12-12 | 2011-08-31 | 深圳华大基因研究院 | 一种测序序列纠错方法、系统及设备 |
WO2010066116A1 (zh) * | 2008-12-12 | 2010-06-17 | 深圳华大基因研究院 | 一种片段连接支架的构建方法、系统和基因组测序设备 |
CN101751517B (zh) * | 2008-12-12 | 2014-02-26 | 深圳华大基因科技服务有限公司 | 一种基因组短序列映射的快速处理方法及系统 |
CN102732598A (zh) * | 2011-04-11 | 2012-10-17 | 陈先锋 | 一种全基因组dna序列拼接测序方法 |
CN102732598B (zh) * | 2011-04-11 | 2017-03-01 | 陈先锋 | 一种全基因组dna序列拼接测序方法 |
WO2013078624A1 (zh) * | 2011-11-29 | 2013-06-06 | 深圳华大基因科技有限公司 | 基于核酸序列的重复特征识别的方法及其装置 |
CN102789553A (zh) * | 2012-07-23 | 2012-11-21 | 中国水产科学研究院 | 利用长转录组测序结果装配基因组的方法及装置 |
CN102789553B (zh) * | 2012-07-23 | 2015-04-15 | 中国水产科学研究院 | 利用长转录组测序结果装配基因组的方法及装置 |
CN102867134B (zh) * | 2012-08-16 | 2016-05-18 | 盛司潼 | 一种对基因序列片段进行拼接的系统和方法 |
CN102867134A (zh) * | 2012-08-16 | 2013-01-09 | 盛司潼 | 一种对基因序列片段进行拼接的系统和方法 |
CN104017883A (zh) * | 2014-06-18 | 2014-09-03 | 深圳华大基因科技服务有限公司 | 组装基因组序列的方法和系统 |
CN104017883B (zh) * | 2014-06-18 | 2015-11-18 | 深圳华大基因科技服务有限公司 | 组装基因组序列的方法和系统 |
CN104794371A (zh) * | 2015-04-29 | 2015-07-22 | 深圳华大基因研究院 | 检测逆转座子插入多态性的方法和装置 |
CN104794371B (zh) * | 2015-04-29 | 2018-02-09 | 深圳华大生命科学研究院 | 检测逆转座子插入多态性的方法和装置 |
CN105631242A (zh) * | 2015-12-25 | 2016-06-01 | 中国农业大学 | 一种利用全基因组测序数据鉴定转基因事件的方法 |
CN105631242B (zh) * | 2015-12-25 | 2018-09-11 | 中国农业大学 | 一种利用全基因组测序数据鉴定转基因事件的方法 |
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CN1169967C (zh) | 2004-10-06 |
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