CN115322257B - BCMA targeting antibody, chimeric antigen receptor and application thereof - Google Patents

BCMA targeting antibody, chimeric antigen receptor and application thereof Download PDF

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CN115322257B
CN115322257B CN202210605705.0A CN202210605705A CN115322257B CN 115322257 B CN115322257 B CN 115322257B CN 202210605705 A CN202210605705 A CN 202210605705A CN 115322257 B CN115322257 B CN 115322257B
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antibody
binding fragment
antigen
bcma
cell
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CN115322257A (en
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赵阳兵
潘伟
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Shanghai Youtijisheng Biomedical Co ltd
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    • C07K16/2878Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the NGF-receptor/TNF-receptor superfamily, e.g. CD27, CD30, CD40, CD95
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Abstract

The present invention discloses anti-BCMA antibodies and antigen binding fragments, chimeric antigen receptors ("CARs") having these anti-BCMA antibodies and antigen binding fragments ("BCMA CARs") and genetically engineered immune effector cells having these BCMA CARs. The invention also provides polynucleotides encoding anti-BCMA antibodies and antigen binding fragments, as well as BCMA CARs. The invention also provides compositions comprising anti-BCMA antibodies and antigen binding fragments, as well as BCMA CARs. The invention also relates to the use of said anti-BCMA antibodies and antigen binding fragments, and genetically engineered immune effector cells having such BCMA CARs in the treatment of cancer.

Description

BCMA targeting antibody, chimeric antigen receptor and application thereof
1. Technical field
The present invention relates to molecular biology, cell biology and immunooncology. Specifically, the invention provides genetically engineered immune effector cells comprising anti-BCMA antibodies, chimeric antigen receptors ("BCMA CARs") comprising the anti-BCMA antibodies, expressing the BCMA CARs, and their use in treating tumors or cancers.
2. Background art
B Cell Maturation Antigen (BCMA) is a transmembrane glycoprotein expressed on mature B lymphocytes. BCMA expression is associated with a variety of diseases including cancer and infectious diseases. However, current therapies for BCMA, including BCMA binding Chimeric Antigen Receptors (CARs) and cells expressing such CARs, have met with limited success. Thus, the selection of other BCMA targeted therapies represents an unmet need. The compositions and methods provided herein meet these needs and have other related advantages.
3. Summary of the invention
The present invention provides antibodies or antigen binding fragments thereof capable of specifically binding BCMA (e.g., human BCMA), comprising: (a) A light chain variable region (VL) comprising a light chain CDR1 (VL CDR 1), a light chain CDR2 (VL CDR 2), and a light chain CDR3 (VL CDR 3) having the amino acid sequences shown in SEQ ID NOs 8, 18, and 28, respectively; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VL CDRs; and/or (b) a heavy chain variable region (VH) comprising a heavy chain CDR1 (VH CDR 1), a heavy chain CDR2 (VH CDR 2), and a heavy chain CDR3 (VH CDR 3) having the amino acid sequences set forth in SEQ ID NOs 39, 51, and 63, respectively; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the antibodies and antigen-binding fragments provided herein include VL CDR1, VL CDR2, VL CDR3, VH CDR1, VH CDR2, and VH CDR3, wherein (a) the VL CDR1, CDR2, and CDR3 have the amino acid sequences shown in SEQ ID NOs 8, 18, and 28, respectively; and (b) said VH CDR1, CDR2 and CDR3 have the amino acid sequences of SEQ ID NOS 39, 51 and 63, respectively.
The invention provides antibodies, or antigen binding fragments thereof, capable of specifically binding BCMA (e.g., human BCMA), comprising: (a) VL having at least 85%, at least 90%, at least 95%, at least 98% or 100% sequence identity to the amino acid sequence set forth in SEQ ID No. 75; and/or (b) a VH having at least 85%, at least 90%, at least 95%, at least 98% or 100% sequence identity to the amino acid sequence set forth in SEQ ID No. 87.
In some embodiments, antibodies and antigen-binding fragments provided herein include a VL and a VH, wherein the VL and VH have the amino acid sequences set forth in SEQ ID NOs 75 and 87, respectively.
The invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA) comprising (a) a VL comprising VL CDR1, CDR2, and CDR3, said VL CDR1, CDR2, and CDR3 being derived from a VL having the amino acid sequence set forth in SEQ ID No. 75, and/or (b) a VH comprising VH CDR1, CDR2, and CDR3, said VH CDR1, CDR2, and CDR3 being derived from a VH having the amino acid sequence set forth in SEQ ID No. 87.
In some embodiments, the invention provides antibodies or antigen binding fragments that compete with the antibodies or antigen binding fragments described herein for binding to BCMA.
In some embodiments, the antibodies or antigen-binding fragments provided herein are monoclonal antibodies or antigen-binding fragments. In some embodiments, the antibodies or antigen binding fragments provided herein are bispecific or multispecific antibodies. In some embodiments, the antibodies provided herein are bispecific T cell engagers (bites). In some embodiments, the antibodies provided herein are selected from the group consisting of IgG1 antibodies, igG2 antibodies, igG3 antibodies, and IgG4 antibodies. In some embodiments, the antibodies or antigen binding fragments provided herein are selected from the group consisting of Fab, fab ', F (ab') 2 、Fv、scFv、(scFv) 2 A single domain antibody (sdAb) and a heavy chain antibody (HCAb). In some embodiments, the antibodies or antigen binding fragments provided herein are scFv.
In some embodiments, the antibodies or antigen-binding fragments provided herein are chimeric antibodies or antigen-binding fragments, humanized antibodies or antigen-binding fragments, or human antibodies or antigen-binding fragments. In some embodiments, the antibodies or antigen-binding fragments provided herein are human antibodies or antigen-binding fragments.
The invention also provides polynucleotides encoding the antibodies or antigen binding fragments of the invention. In some embodiments, the polynucleotide is messenger RNA (mRNA). In some embodiments, the invention provides vectors comprising the polynucleotides of the invention. In some embodiments, the invention provides a host cell comprising a polynucleotide of the invention or a vector of the invention.
The invention also provides a Chimeric Antigen Receptor (CAR) that specifically binds BCMA comprising, from N-terminus to C-terminus: (a) BCMA binding domains comprising an antibody or antigen binding fragment of the invention; (b) a transmembrane domain; and (c) a cytoplasmic domain. In some embodiments, the transmembrane domain is derived from CD8, CD28, CD3ζ, CD4, 4-1BB, OX40, ICOS, CTLA-4, PD-1, LAG-3, 2B4, BTLA, TCR alpha chain, TCR beta chain, or TCR zeta chain, CD3 ε, CD45, CD5, CD8, CD9, CD16, CD22, CD33, CD37, CD64, CD80, CD86, CD134, or CD154.
In some embodiments of the CARs provided herein, the transmembrane domain comprises a CD8 transmembrane region or a CD28 transmembrane region. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from cd3ζ, fcrγ, fcγriia, fcrβ, cd3γ, cd3δ, cd3ε, CD5, CD22, CD79a, CD79b, DAP10, DAP12, or any combination thereof. In some embodiments, the cytoplasmic domain further comprises a costimulatory domain derived from CD28, 4-1BB (CD 137), OX40, ICOS, DAP10, 2B4, CD27, CD30, CD40, CD2, CD7, LIGHT, GITR, TLR, DR3, CD43, or any combination thereof, in some embodiments, the cytoplasmic domain comprises a CD3 zeta signaling domain and a 4-1BB costimulatory domain. In some embodiments, the cytoplasmic domain comprises a CD3 zeta signaling domain and a CD28 costimulatory domain.
In some embodiments, the CARs provided herein further comprise a CD8 hinge, the CD8 hinge being located between the antibody or antigen binding fragment and the transmembrane domain.
In some embodiments, the invention provides a CAR that specifically binds BCMA comprising the amino acid sequence shown by SEQ ID No. 138.
The invention also provides polynucleotides encoding the CARs of the invention. In some embodiments, the polynucleotide is mRNA. The invention also provides a vector comprising the polynucleotide of the invention or the vector of the invention.
In some embodiments, the cells provided herein are immune effector cells. In some embodiments, the cells are derived from cells isolated from peripheral blood or bone marrow. In some embodiments, the cells are derived from cells differentiated in vitro from stem or progenitor cells selected from the group consisting of T cell progenitor cells, hematopoietic stem/progenitor cells, hematopoietic multipotent progenitor cells, embryonic stem cells, and induced multipotent cells. In some embodiments, the cell is a T cell or NK cell. In some embodiments, the cell is a cytotoxic T cell, helper T cell, γδ T cell, cd4+/cd8+ double positive T cell, cd4+ T cell, cd8+ T cell, CD4/CD8 double negative T cell, cd3+ T cell, naive T cell, effector T cell, helper T cell, memory T cell, regulatory T cell, th0 cell, th1 cell, th2 cell, th3 (Treg) cell, th9 cell, th17 cell, thαβ helper cell, tfh cell, stem cell memory TSCM cell, central memory TCM cell, effector memory TEM cell, or effector memory TEMRA cell. In some embodiments, the cell is a cytotoxic T cell.
In some embodiments, the invention provides a population of cells according to the invention, wherein the population of cells is derived from Peripheral Blood Mononuclear Cells (PBMCs), peripheral Blood Lymphocytes (PBLs), tumor-infiltrating lymphocytes (TILs), cytokine-induced killer Cells (CIKs), lymphokine-activated killer cells (LAKs), or bone marrow-infiltrating lymphocytes (MILs).
In some embodiments, the invention provides a pharmaceutical composition comprising a therapeutically effective amount of an antibody or antigen-binding fragment of the invention, and a pharmaceutically acceptable carrier. In some embodiments, the invention provides a pharmaceutical composition comprising a therapeutically effective amount of a cell or cell population described herein, and a pharmaceutically acceptable carrier.
In some embodiments, the invention provides the use of an antibody or antigen binding fragment of the invention, a cell or population of cells of the invention, or a pharmaceutical composition of the invention in the treatment of cancer. In some embodiments, the invention provides the use of an antibody or antigen binding fragment of the invention, a cell or population of cells of the invention, or a pharmaceutical composition of the invention in the manufacture of a medicament for the treatment of cancer. In some embodiments, the cell, cell population, or pharmaceutical composition is used in combination with an additional therapy.
In some embodiments, the invention provides a method of treating cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of an antibody or antigen binding fragment of the invention, or a pharmaceutical composition of the invention.
In some embodiments, the invention provides methods of treating cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of a cell or population of cells described herein. In some embodiments, the cell population is a cell population of the subject's own. In some embodiments, the methods provided herein further comprise obtaining T cells from the subject. In some embodiments, the methods provided herein further comprise administering an additional treatment to the subject.
In some embodiments, the subject is a human.
In some embodiments of the use or method provided herein, the cancer is a BCMA-expressing cancer. In some embodiments, the cancer is a solid tumor or a hematological cancer. In some embodiments, the cancer is a B cell malignancy. In some embodiments, the cancer is a lymphoma, leukemia, or plasma cell malignancy. In some embodiments, the cancer is Multiple Myeloma (MM), fahrenheit macroglobulinemia, hodgkin's lymphoma or non-hodgkin's lymphoma. In some embodiments, the cancer is MM. In some embodiments, the MM is non-secretory multiple myeloma, or smoldering multiple myeloma.
The invention also provides a method of making a cell capable of expressing a CAR that specifically binds BCMA, comprising transferring a polynucleotide of the invention into the cell. In some embodiments, the cell is selected from the group consisting of a T cell, NK cell, NKT cell, macrophage, neutrophil, and granulocyte. In some embodiments, the polynucleotide is transferred by electroporation. In some embodiments, the polynucleotide is transferred by viral transduction. In some embodiments, the invention provides methods comprising using lentiviruses, retroviruses, adenoviruses, or adeno-associated viruses for viral transduction. In some embodiments, the polynucleotide is transferred by a transposon system. In some embodiments, the transposon system is Sleeping Beauty (Sleeping Beauty) or PiggyBac. In some embodiments, the polynucleotide is transferred by gene editing. In some embodiments, the polynucleotide is transferred by a CRISPR-Cas system, ZFN system, or TALEN system.
4. Description of the drawings
FIGS. 1A-1B provide flow cytometry data for anti-BCMA CAR-T cells stained with CD19-Fc (FIG. 1A) or BCMA-Fc (FIG. 1B).
Fig. 2A provides the frequency of car+ cells in T cells transduced with the specified BCMA CARs.
Figure 2B provides the Mean Fluorescence Intensity (MFI) of CAR expression in T cells transduced with the specified BCMA CARs.
Figure 3 provides the frequency of car+cd8 cells in T cells transduced with the specified BCMA CARs.
FIG. 4 provides phenotypes of designated CART cells characterized by CCR7 expression and CD45RO expression.
FIGS. 5A-5B provide expression of BCMA in tumor cell lines. Fig. 5A provides FACS results. Fig. 5B provides relative expression levels compared to a549 cells.
FIGS. 6A-6B provide ELISA results showing the production of INF-gamma and IL-2 by designated CART cells. FIG. 6A shows the production of INF-gamma. FIG. 6B shows IL-2 production.
FIGS. 7A-7D provide the results of tumor killing assays showing cytolytic activity of designated CART cells against Jeko-1 cells at different E (T cells): T (tumor cells) ratios. Fig. 7A: e: t=0.1: 1, a step of; fig. 7B: e: t=0.5: 1, a step of; fig. 7C: e: t=2: 1, a step of; fig. 7D: e: t=2: 1 (enlarged view).
FIGS. 8A-8E provide tumor killing assay results showing cytolytic activity of designated CART cells against RPMI-8226 cells. Fig. 8a: e: t=0.1:1; fig. 8b, e: t=0.5:1; fig. 8c: e: t=2:1 (enlarged view); fig. 8d: e: t=2:1; fig. 8e: t=0.5:1 (enlarged view).
5. Detailed description of the preferred embodiments
Before the present invention is further described, it is to be understood that this invention is not limited to particular embodiments described herein, and that this invention is not limited to particular examples, which are intended as such.
B-cell maturation antigen (BCMA), also known as tumor necrosis factor receptor superfamily member 17 (TNFRSF 17), is a member of the TNF-receptor superfamily. BCMA is preferentially expressed in mature B lymphocytes and plays an important role in B cell development and autoimmune response. BCMA has been shown to specifically bind to tumor necrosis factor (ligand) superfamily member 13B (TNFSF 13B/tal-1/BAFF) and result in activation of NF- κb and MAPK 8/JNK. BCMA has also been shown to bind to a variety of TRAF family members and switch signals for cell survival and proliferation.
Excessive expression and activation of BCMA is associated with human tumors such as Multiple Myeloma (MM), shah et al, leukemia,34:985-1005 (2020), MM is a hematological malignancy characterized by uncontrolled proliferation of plasma cells in the bone marrow. There are about 16 ten thousand new diagnosed cases annually worldwide, and 11 ten thousand patients die. This disease is incurable, although survival is increasing with the development of new treatments.
The present invention provides novel antibodies, including antigen binding fragments that specifically bind BCMA (e.g., human BCMA). Furthermore, the present invention provides Chimeric Antigen Receptors (CARs) comprising such antibodies or antigen binding fragments that specifically bind BCMA (e.g., human BCMA), as well as genetically engineered immune effector cells (e.g., T cells) and cell populations whose cells are cells (e.g., CART) that recombinantly express CARs that specifically bind BCMA (e.g., human BCMA). Also disclosed are pharmaceutical compositions comprising a therapeutically effective amount of such antibodies or antigen binding fragments, as well as pharmaceutical compositions comprising a therapeutically effective amount of cells or cell populations. The invention also discloses the use of such pharmaceutical compositions in the treatment of diseases and conditions associated with BCMA expression (e.g., BCMA expressing cancers) and related methods of treatment.
5.1 definition
Unless defined otherwise herein, scientific and technical terms used herein shall have the meanings commonly understood by one of ordinary skill in the art. Furthermore, unless the context requires otherwise, singular terms shall include the plural and plural terms shall include the singular. Generally, the terms and techniques used in connection with cell and tissue culture, molecular biology, immunology, microbiology, genetics, and protein and nucleic acid chemistry and hybridization are well known and commonly used in the art.
The present invention provides novel antibodies comprising antigen binding fragments that specifically bind BCMA (e.g., human BCMA). The term "BCMA" includes any variant or subtype of BCMA that is naturally expressed by cells. Thus, the antibodies of the invention are capable of cross-reacting with BCMA of a species other than human (e.g., cynomolgus BCMA). Alternatively, the antibody can be specific for human BCMA and not have any cross-reactivity with other species. BCMA or any variant or subtype thereof may be isolated from cells or tissues that naturally express them or recombinantly produced using techniques well known in the art and/or techniques described herein.
The term "antibody" and grammatical equivalents thereof as used herein refers to an immunoglobulin molecule that recognizes and specifically binds a target, such as a protein, polypeptide, peptide, carbohydrate, polynucleotide, lipid, or a combination of any of the foregoing, through at least one antigen binding site, typically within the variable region of the immunoglobulin molecule. As used herein, the term includes intact polyclonal antibodies, intact monoclonal antibodies, single domain antibodies (sdabs, e.g., camelid antibodies, alpaca antibodies), single chain Fv (scFv) antibodies, heavy chain antibodies (HCAbs), light chain antibodies (LCAbs), multispecific antibodies, bispecific antibodies, monospecific antibodies, monovalent antibodies, and any other modified immunoglobulin molecule comprising an antigen binding site (e.g., a double variable region immunoglobulin molecule), so long as the antibody exhibits the desired biological activity. The antibodies also include, but are not limited to, mouse antibodies, camelid antibodies, chimeric antibodies, humanized antibodies, and humanized antibodies. Antibodies can be any of five major immunoglobulins: igA, igD, igE, igG and IgM or subclasses (isotypes) thereof (e.g., igG1, igG2, igG3, igG4, igA1, and IgA 2) based on the identity of their heavy chain constant regions (referred to as α, δ, ε, γ, and μ, respectively). The term "antibody" as used herein includes "antigen binding fragments" of whole antibodies, unless explicitly stated otherwise. The term "antigen-binding fragment" as used herein refers to an epitope that is part or fragment of an intact antibody, i.e., an epitope variable region of an intact antibody. Examples of antigen binding fragments include, but are not limited to, fab ', F (ab') 2, fv, linear antibodies, single chain antibody molecules (e.g., scFv), heavy chain antibodies (HCAbs), light chain antibodies (LCAbs), disulfide-linked scFv (dsscFv), diabodies, triabodies, tetrabodies, minibodies, diabody (DVD), single variable region antibodies (sdAb, e.g., camelid, alpaca) and single variable region (VHH) of heavy chain antibodies, and bispecific or multispecific antibodies formed from antibody fragments.
The term "humanized antibody" as used herein refers to a form of non-human (e.g., mouse) antibody that is a specific immunoglobulin chain, chimeric immunoglobulin or fragment thereof that contains minimal non-human sequences. Typically, the humanized antibody is a human immunoglobulin. In some cases, fv framework region residues of the human immunoglobulin are replaced by corresponding residues in antibodies from non-human species. In certain instances, CDR residues are replaced with CDR residues from a non-human species (e.g., mouse, rat, hamster, camel) that have the desired specificity, affinity, and/or binding capacity. The humanized antibodies can be further modified by substitution of additional residues in the Fv framework region and/or substituted non-human residues to refine and optimize antibody specificity, affinity, and/or binding capacity. The term "human antibody" as used herein refers to an antibody produced by a human or an antibody having an amino acid sequence corresponding to an antibody produced by a human, wherein the antibody produced by a human can be made using any technique known in the art.
When used in reference to an antibody, the term "heavy chain" refers to a polypeptide chain of about 50-70kDa, wherein the amino-terminal portion includes a variable region of about 120-130 or more amino acids and the carboxy-terminal portion includes a constant region. Depending on the amino acid sequence of the heavy chain constant region, the constant region may be one of five different types, called alpha (a), delta (delta), epsilon (epsilon), gamma (gamma), and mu (mu). Different heavy chains vary in size: alpha, delta and gamma comprise about 450 amino acids, while mu and epsilon comprise about 550 amino acids. When combined with light chains, these different types of heavy chains produce five well known classes of antibodies, igA, igD, igE, igG and IgM, respectively, including four subclasses of IgG, called IgGl, igG2, igG3 and IgG4. The heavy chain may be a human heavy chain.
When used in reference to an antibody, the term "light chain" refers to a polypeptide chain of about 25kDa, wherein the amino-terminal portion includes a variable region of about 100 to about 110 or more amino acids and the carboxy-terminal portion includes a constant region. The length of the light chain is about 211 to 217 amino acids. Depending on the amino acid sequence of the constant region, there are two different types of light chains, known as kappa (kappa) and lambda (lambda). The amino acid sequence of the light chain is well known in the art. The light chain may be a human light chain.
The term "variable domain" or "variable region" refers to a portion of the light or heavy chain of an antibody that is typically at the amino terminus of the light or heavy chain and has a length of about 120 to 130 amino acids in the heavy chain and about 100 to 110 amino acids in the light chain for binding and specificity of each particular antibody for its particular antigen. The variable domains vary greatly in sequence between different antibodies. The variability of the sequence is concentrated in the CDRs, while the less variable parts of the variable domains are called Framework Regions (FR). The CDRs of the light and heavy chains are primarily responsible for the interaction between the antibody and antigen. Amino acid position numbers used in the present invention are according to EU index, kabat et al (1991) Sequences of proteins of immunological intermediate (u.s.device of Health and Human Services, washington, d.c.) 5 the. The variable region may be a human variable region.
One CDR refers to one of the three hypervariable regions (H1, H2 or H3) in the non-framework region of the β -sheet framework in an immunoglobulin (Ig or antibody) VH, or one of the three hypervariable regions (L1, L2 or L3) in the non-framework region of the β -sheet framework of an antibody VL. Thus, CDRs are variable region sequences interspersed with framework region sequences. CDR regions are well known to those skilled in the art and have been defined by a variety of methods/systems. These systems and/or definitions have evolved and perfected over many years, including Kabat, chothia, IMGT, abM and contacts. For example, kabat defines the region of highest variability within the variable (V) domain of an antibody ((Kabat et Al, J. Biol. Chem.252:6609-6616 (1977); in addition, the IMGT system is based on sequence variability and positions within the variable region structure AbM definition is a compromise between Kabat and Chothia.Contact definition is based on analysis of variable antibody crystal structure software programs for analyzing antibody sequences and determining CDRs (e.g., abYsis) are available and known to those skilled in the art to be able to accommodate different conformations (Chothia and Lesk, J. Mol. Biol.196:901-917 (1987)). Both terms are well known in the art. Furthermore, the IMGT system is based on sequence variability and positions within the variable region structure AbM definition is a compromise between Kabat and Chothia.Contact definition is based on analysis of variable antibody crystal structure software programs for analyzing antibody sequences and determining CDRs (e.g., abYsis) the positions of CDRs within a standard antibody variable structure have been determined by comparison of a number of structures (Al-Laziani et Al, J. Mol. Biol. 273-1997) and J. Mol. Biol. 273-8 (1997) the same numbering scheme is carried out for residues within the same domain as that of the standard antibody variable structure (see also well known in the art, amino acid sequence numbering scheme for amino acid residues in the variable region sequence numbers of amino acid residues in the variable region sequence).
For example, CDRs defined according to Kabat (high variability) or Chothia (structure) nomenclature are listed in the table below.
Kabat 1 Chothia 2 Loop Location
VH CDRl 31-35 26-32 linking B and C strands
VH CDR2 50-65 53-55 linking C’and C”strands
VH CDR3 95-102 96-101 linking F and G strands
VL CDRl 24-34 26-32 linking B and C strands
VL CDR2 50-56 50-52 linking C’and C”strands
VL CDR3 89-97 91-96 linking F and G strands
1 Residue numbering follows the nomenclature of Kabat et al, supra
2 Residue numbering follows the nomenclature of Chothia et al, supra
One or more CDRs may also be covalently or non-covalently incorporated into a molecule making it an immunoadhesin. Immunoadhesins can have a CDR as part of a larger polypeptide chain, can covalently link the CDR to another polypeptide chain, or can non-covalently bind the CDR. CDRs enable immunoadhesins to bind to specific antigens. CDR regions can be obtained, for example, via the abysis website @, for examplehttp:// abysis.org/) Analysis was performed.
Thus, unless otherwise specified, a CDR or a separately specified CDR (e.g., VL CDR1, VL CDR2, VL CDR 3) of a given antibody or region thereof, e.g., a variable region thereof, is understood to comprise any one (or a particular) complementarity determining region of the above schemes or other known schemes. For example, where a particular CDR (e.g., VH CDR 3) is stated to contain the amino acid sequence of the corresponding CDR in a given VH or VL region, it is to be understood that such CDR has the sequence of the corresponding CDR (e.g., CDR-H3) within the variable region as defined in any one of the schemes described above or other known schemes. In some embodiments, although specific CDR sequences are specified, it is to be understood that the provided antibodies may include CDRs according to the above or other numbering schemes known to those of skill in the art. Likewise, unless otherwise specified, reference to an FR or individually specified FR (e.g., VH FRl, VH FR2, VH FR3, VH FR 4) for a given antibody or region thereof (e.g., variable region thereof) should be understood to include a (or specific) framework region defined by any known scheme.
The terms "epitope" and "antigenic determinant" are used interchangeably herein to refer to a site on the surface of a target molecule to which an antibody or antigen binding fragment binds, e.g., a localized region on the surface of an antigen. The target molecule may comprise a protein, peptide, nucleic acid, carbohydrate or lipid. An immunologically active epitope is part of a target molecule that induces an immune response in an animal. An epitope of a target molecule that has antigenic activity is part of an antibody-bound target molecule, as determined by any method known in the art, including, for example, by immunoassay. Epitopes are not necessarily immunogenic. Epitopes are generally composed of chemically active surface groups of molecules such as amino acids or sugar side chains, and have specific three-dimensional structural features as well as specific charge characteristics. The term "epitope" includes both linear and conformational epitopes. One region of the target molecule (e.g., a polypeptide) that may serve as an epitope may be contiguous amino acids of the polypeptide, or may result from aggregation of two or more non-contiguous regions of the target molecule. The epitope may or may not be a three-dimensional surface feature of the target molecule. Epitopes formed by consecutive amino acids (also referred to as linear epitopes) are typically retained upon protein denaturation, whereas epitopes formed by tertiary folding (also referred to as conformational epitopes) are typically lost upon protein denaturation. An epitope in a unique spatial conformation typically comprises at least 3, more typically at least 5, 6, 7 or 8-10 amino acids.
The term "specific binding" as used herein refers to a polypeptide or molecule that interacts more frequently and more rapidly with an epitope, protein, or target molecule than other substances (including related and unrelated proteins) with longer duration, greater affinity, or binding as described above. Binding moieties (e.g., antibodies) that specifically bind to a target molecule (e.g., antigen) can be determined, for example, by immunoassay, ELISA, SPR (e.g., biacore), or other techniques known to those of skill in the art. Typically, the specified response is at least twice the background signal or noise, and may be more than 10 times the background. See, e.g., paul, ed.,1989,Fundamental Immunology Second Editionraven Press, new York at pages 332-336, discussion of antibody specificity. Binding moieties that specifically bind to a target molecule can have a higher affinity for the target molecule than for other molecules. In some embodiments, the binding moiety that specifically binds to a target molecule may have an affinity for the target molecule that is at least 20-fold, at least 30-fold, at least 40-fold, at least 50-fold, at least 60-fold, at least 70-fold, at least 80-fold, at least 90-fold, or at least 100-fold higher than its affinity for other molecules. In some embodiments, the binding moiety that specifically binds to a particular target molecule, among others The affinity of the binding of the molecule is so low that the binding cannot be detected by assays described in the present invention or known in the art. In some embodiments, "specifically binds" means, for example, that the binding moiety is at about 0.1mM or less K D Values bind to molecular targets. In some embodiments, "specifically binds" means that the polypeptide or molecule has a K of about 10. Mu.M or less, or about 1. Mu.M or less D Values bind the target. In some embodiments, "specifically binds" means that the polypeptide or molecule binds at a K of about 0.1. Mu.M or less, about 0.01. Mu.M or less, or about 1nM or less D Values bind the target. Due to sequence identity between homologous proteins in different species, specific binding may include a polypeptide or molecule that recognizes a protein or target in multiple species. Also, due to homology within certain regions of polypeptide sequences of different proteins, specific binding may include polypeptides or molecules that recognize multiple proteins or targets. It will be appreciated that in some embodiments, a binding moiety (e.g., an antibody) that specifically binds a first target molecule may or may not bind a second target. As such, "specific binding" is not necessarily (although it may include) binding alone, i.e., binding to a single target. Thus, in some embodiments, a binding moiety (e.g., an antibody) can specifically bind to multiple targets. For example, in some cases, an antibody may comprise two identical antigen binding sites, each site specifically binding to the same epitope on two or more proteins. In certain alternative embodiments, the antibody may be bispecific and include at least two antigen binding sites with different specificities.
The term "binding affinity" as used herein generally refers to the strength of the sum of non-covalent interactions between a binding moiety and a target molecule (e.g., antigen). Binding of the binding moiety to the target molecule is a reversible process, and the affinity of the binding is generally reported as the equilibrium dissociation constant (K D )。K D Is the dissociation rate (k) off Or k d ) And binding rate (k) on Or k a ) Is a ratio of (2). K of binding pair D The lower the affinity, the higher. A variety of methods for measuring binding affinity are known in the art, any of which may be used in the present inventionThe invention is characterized in that. Specific illustrative embodiments include the following. In some embodiments, "K D "or" K D The value "may be determined by assays known in the art, for example by binding assays. K (K) D Can be measured in a radiolabeled antigen binding assay (RIA) (Chen, et al, (1999) J.mol Biol 293:865-881). The K is D Or K D Values may also be analyzed by surface plasmon resonance using Biacore, for example using BIacore TM-2000 or BIacore TM-3000 (Biacore, inc., piscataway, N.J.), or using biological layer interferometry, for example the OctetQK384 system (ForteBio, menlo Park, calif.).
The term "variant" as used herein relates to a protein or polypeptide having a particular sequence characteristic (a "reference protein" or "reference polypeptide") and refers to a different protein or polypeptide having one or more (e.g., about 1 to about 25, about 1 to about 20, about 1 to about 15, about 1 to about 10, or about 1 to about 5) amino acid substitutions, deletions, and/or additions as compared to the reference protein or reference polypeptide. The change in amino acid sequence may be an amino acid substitution. The amino acid sequence changes may be conservative amino acid substitutions. Functional fragments or functional variants of a protein or polypeptide retain the basic structural and functional properties of the reference protein or polypeptide.
The terms "polypeptide", "peptide", "protein" and grammatical equivalents thereof used interchangeably herein refer to polymers of amino acids of any length, which may be linear or branched. It may include unnatural or modified amino acids, or be interrupted by non-amino acids. The polypeptide, peptide or protein may also be modified, for example by disulfide bond formation, glycosylation, lipidation, acetylation, phosphorylation or any other manipulation or modification.
The terms "polynucleotide", "nucleic acid" and grammatical equivalents thereof used interchangeably herein refer to polymers of nucleotides of any length, including DNA and RNA. The nucleotide may be a deoxyribonucleotide, a ribonucleotide, a modified nucleotide or base, and/or an analogue thereof, or may be any substrate that can be incorporated into a polymer by a DNA or RNA polymerase.
In the context of two or more polynucleotides or polypeptides, the term "identity", percent "identity" and grammatical equivalents thereof, refers to two or more sequences or subsequences that are the same or have a specified percentage of the same nucleotide or amino acid residues, regardless of any conservative amino acid substitution, as part of sequence identity, when compared and aligned (introducing gaps, if necessary) to obtain maximum correspondence. The percentage of sequence may be measured using sequence comparison software or algorithms or by visual inspection. Various algorithms and software are well known in the art that can be used to obtain amino acid or nucleotide sequence alignments. Such algorithms or software include, but are not limited to BLAST, ALIGN, megalign, bestFit, GCG Wisconsin Package and variants thereof. In some embodiments, the two polynucleotides or polypeptides provided herein are substantially identical, meaning that they have at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, and in some embodiments at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% nucleotide or amino acid residue identity when compared and aligned using a sequence comparison algorithm or by visual inspection to obtain maximum correspondence. In some embodiments, identity exists over a region of the amino acid sequence that is at least about 10 residues in length, at least about 20 residues, at least about 40-60 residues, at least about 60-80 residues, or any integer value in between. In some embodiments, the identity exists over a region longer than 60-80 residues, such as at least about 80-100 residues, and in some embodiments, the sequences are substantially identical over the entire length of the compared sequences, such as the coding region of a protein or antibody of interest. In some embodiments, identity exists over a region of the nucleotide sequence that is at least about 10 bases in length, at least about 20 bases, at least about 40-60 bases, at least about 60-80 bases, or any integer value in between. In some embodiments, identity exists over a region longer than 60-80 bases, such as at least about 80-1000 bases or more, and in some embodiments, these sequences are substantially identical over the entire length of the sequences being compared (e.g., nucleotide sequences encoding the protein of interest).
The term "vector" and grammatical equivalents thereof as used herein refers to a vector for carrying genetic material (e.g., polynucleotide sequences) that can be introduced into a host cell where it can be replicated and/or expressed. Vectors that may be used include, for example, expression vectors, plasmids, phage vectors, viral vectors, episomes, and artificial chromosomes, which may include selection sequences or markers operable for stable integration into a host cell chromosome. In addition, the vector may include one or more selectable marker genes and appropriate expression control sequences. The selectable marker gene that may be included can, for example, provide resistance to antibiotics or toxins, supplement auxotrophs, or provide critical nutrients not present in the medium. The expression control sequences may include constitutive and inducible promoters, transcriptional enhancers, transcriptional terminators, and the like, as are known in the art. When two or more polynucleotides are to be co-expressed, both polynucleotides may be inserted, for example in a single expression vector or in separate expression vectors. For single vector expression, the encoded polynucleotides may be operably linked to a common expression control sequence, or may be linked to different expression control sequences, such as an inducible promoter and a constitutive promoter. The introduction of the polynucleotide into the host cell may be confirmed using methods well known in the art. Those of skill in the art understand that polynucleotides are expressed in sufficient amounts to produce the desired product (e.g., the invention described herein includes anti-CD 40BCMA antibodies or antigen binding fragments thereof), and further understand that expression levels can be optimized to obtain sufficient expression using methods well known in the art.
The term "chimeric antigen receptor" or "CAR" as used herein refers to an artificially constructed hybrid protein or polypeptide that contains a binding moiety (e.g., an antibody) linked to an immune cell (e.g., T cell) signaling or activation domain. In some embodiments, the CAR is a synthetic receptor capable of re-targeting T cells to tumor surface antigens (Sadelain et al, nat. Rev. Cancer.3 (1): 35-45 (2003); sadelain et al, cancer Discovery 3 (4): 388-398 (2013)). The CAR can provide antigen binding and immune cell activation functions to immune cells (e.g., T cells). CARs are able to utilize the antigen binding properties of monoclonal antibodies to redirect T cell specificity and reactivity to a selected target in a non-MHC-restricted manner. non-MHC-restricted antigen recognition can provide CAR-expressing T cells with antigen recognition capability independent of antigen processing, thereby avoiding tumor escape mechanisms.
The term "genetic engineering" or grammatical equivalents thereof, when used in reference to a cell, means a change in the genetic material of the cell that is not normally present in a naturally occurring cell. Genetic alterations include, for example, modifications that introduce expressible polynucleotides, other additions, mutations/alterations, deletions, and/or other functional disruptions of cellular genes. Such modifications may be made, for example, in the coding region of the gene and functional fragments thereof. Additional modifications may be made, for example, in non-coding regulatory regions, wherein the modifications alter the expression of the gene.
The terms "transfer," "transduction," "transfection," and grammatical equivalents thereof, as used herein, refer to the process of introducing an exogenous polynucleotide into a host cell. A "transferred," "transfected" or "transduced" cell refers to a cell that has been transferred, transduced or transfected with an exogenous polynucleotide. The cells include primary receptor cells and their progeny. The polynucleotide may be "transferred" into the host cell using any type of method known in the art, including chemical, physical, or biological methods. Polynucleotides are typically "transduced" into host cells using viruses. In contrast, polynucleotides are typically "transfected" into host cells using non-viral methods. These terms are sometimes used interchangeably and, when used in context, the meaning will be readily understood by one of ordinary skill in the art.
As used herein, the term "encoding" and grammatical equivalents thereof refers to the inherent nature of a particular nucleotide sequence in a polynucleotide or nucleic acid, such as a gene, cDNA or mRNA, that serves as a template for the synthesis of other polymers and macromolecules having the particular nucleotide sequence (i.e., rRNA, tRNA and mRNA) or a particular amino acid sequence, and the biological properties resulting therefrom, in a biological process. Thus, if transcription and translation of mRNA corresponding to the gene produces a protein, the gene encodes the protein. Unless otherwise indicated, a "nucleotide sequence encoding an amino acid sequence" includes all nucleotide sequences that are degenerate to each other or encode the same amino acid sequence. Nucleotide sequences encoding proteins and RNAs may include introns.
An "isolated" polypeptide, peptide, protein, antibody, polynucleotide, vector, cell, or composition is one that is not found in nature. Isolated polypeptides, proteins, antibodies, polynucleotides, vectors, cells or compositions include those that have been purified to such an extent that they are no longer in the form found in nature. In some embodiments, the isolated polypeptide, peptide, protein, antibody, polynucleotide, vector, cell, or composition is substantially purified.
As used herein and as understood in the art, an "immune effector cell" refers to a cell that has hematopoietic origin and plays a direct role in an immune response against a target (e.g., a pathogen, cancer cell, or foreign substance). Immune effector cells include T cells, B cells, natural Killer (NK) cells, NKT cells, macrophages, granulocytes, neutrophils, eosinophils, mast cells, and basophils.
The term "treatment" and grammatical equivalents thereof as used herein relates to a disease or disorder, or a subject suffering from a disease or disorder, that refers to an act of inhibiting, eliminating, alleviating, and/or ameliorating symptoms, severity of symptoms, and/or frequency of symptoms associated with the disease or disorder being treated. For example, when referring to a cancer or tumor, the term "treat" and grammatical equivalents thereof refers to the act of reducing the severity of the cancer or tumor, or slowing the progression of the cancer or tumor, including (a) inhibiting the growth or arresting the progression of the cancer or tumor, (b) causing regression of the cancer or tumor, or (c) slowing, ameliorating, or minimizing one or more symptoms associated with the presence of the cancer or tumor.
The term "administration" and grammatical equivalents thereof as used herein refers to the act of delivering or causing the delivery of a therapeutic agent or pharmaceutical composition to the body of a subject by methods described herein or other methods known in the art. The therapeutic agent may be a compound, polypeptide, cell, or cell population. Administering a therapeutic agent or pharmaceutical composition comprises prescribing delivery of a therapeutic agent or pharmaceutical composition into a subject. Typical forms of administration include oral dosage forms such as tablets, capsules, syrups, suspensions; injectable dosage forms such as Intravenous (IV), intramuscular (IM) or Intraperitoneal (IP); transdermal dosage forms, including creams, gels, powders or patches; oral dosage forms; inhalation powders, sprays, suspensions, and rectal suppositories.
The terms "effective amount," "therapeutically effective amount," and grammatical equivalents thereof, as used herein, refer to an amount of an agent administered to a subject, alone or as part of a pharmaceutical composition, in a single dose, or as part of a series of doses, that is capable of producing any detectable positive effect on any symptom, aspect, or feature of a disease, disorder, or condition upon administration. The therapeutically effective amount can be determined by measuring the relevant physiological effects. The exact amount required will vary from subject to subject, depending on the age, weight and general condition of the subject, the severity of the symptoms being treated, the judgment of the clinician, and the like. In any individual case, an appropriate "effective amount" can be determined by one of ordinary skill in the art using routine experimentation.
The term "pharmaceutically acceptable carrier" or "pharmaceutically acceptable excipient" refers to a material suitable for administration to an individual with an active agent without causing adverse biological effects or interacting in a deleterious manner with any of the other components of the pharmaceutical composition.
The term "subject" as used herein refers to any animal (e.g., mammal), including but not limited to humans, non-human primates, dogs, felines, rodents, etc., which is an animal to be treated specifically. The subject may be a human. The subject may be a patient suffering from a particular disease or disorder.
The term "autologous" as used herein refers to any material that is derived from the same individual and subsequently reintroduced into that individual.
The term "variant" as used herein refers to grafts derived from different individuals of the same species.
The range is as follows: throughout this disclosure, various aspects of the invention may be presented in a range format. It should be understood that the description of the range format is merely for convenience and brevity and should not be construed as an inflexible limitation on the scope of the invention.
Accordingly, the description of a range should be considered to have specifically disclosed all possible sub-ranges as well as individual values within that range. For example, a description of a range from 1 to 6 should be considered to have disclosed subranges such as from 1 to 3, 1 to 4, 1 to 5, 2 to 4, 2 to 6, 3 to 6, etc., as well as individual numbers within the range, e.g., 1, 2, 2.7, 3, 4, 5, 5.3, and 6. Regardless of the breadth of the range, is applicable thereto.
Exemplary genes and polypeptides are described herein with reference to GenBank accession numbers, GI accession numbers, and/or SEQ ID NOs. It will be appreciated that homologous sequences can be readily identified by those skilled in the art by reference to sequence sources including, but not limited to, genBank (ncbi.lm.nih.gov/GenBank /) and EMBL (EMBL org /).
5.2 anti-BCMA antibodies and antigen binding fragments
The present invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA). In some embodiments, the invention provides anti-BCMA antibodies. In some embodiments, the antibody is a IgA, igD, igE, igG or IgM antibody. In some embodiments, the antibody is an IgA antibody. In some embodiments, the antibody is an IgD antibody. In some embodiments, the antibody is an IgE antibody. In some embodiments, the antibody is an IgG antibody. In some embodiments, the antibody is an IgM antibody. In some embodiments, the antibodies provided herein can be IgG1 antibodies, igG2 antibodies, igG3 antibodies, or IgG4 antibodies. In some embodiments, the antibody is an IgG1 antibody. In some embodiments, the antibody is an IgG2 antibody. In some embodiments, the antibody is an IgG3 antibody. In some embodiments, the antibody is an IgG4 antibody.
In some embodiments, the invention provides antigen binding fragments of anti-BCMA antibodies. In some embodiments, the antigen binding fragments provided herein can be single domain antibodies (sdabs), heavy chain antibodies (hcabs), fab ', F (ab') 2 Fv, single chain variable fragment (scFv) or (scFv) 2 . In some embodiments, the antigen binding fragment of the anti-BCMA antibody is a single domain antibody (sdAb). In some embodiments, the antigen binding fragment of the anti-BCMA antibody is a heavy chain antibody (HCAb). In some embodiments, the antigen binding fragment of the anti-BCMA antibody is a Fab. In some embodiments, the antigen binding fragment of the anti-BCMA antibody is Fab'. In some embodiments, the antigen binding fragment of the anti-BCMA antibody is F (ab') 2 . In some embodiments, the antigen binding fragment of the anti-BCMA antibody is an Fv. In some embodiments, the antigen binding fragment of the anti-BCMA antibody is an scFv. In some embodiments, the antigen binding fragment of the anti-BCMA antibody is a disulfide-linked scFv [ (scFv) 2 ]. In some embodiments, the antigen binding fragment of the anti-BCMA antibody is a bispecific antibody (dAb).
In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include recombinant antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include monoclonal antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include polyclonal antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include camelidae (e.g., camel, dromedary, and llama) antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include chimeric antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include humanized antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein comprise human antibodies or antigen binding fragments. In some embodiments, the invention provides a human scFv against BCMA.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein are isolated antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein are substantially purified.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include multispecific antibodies or antigen binding fragments. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include bispecific antibodies or antigen binding fragments. In some embodiments, the invention provides a bispecific T cell engager (BiTE). BiTE is a bispecific antibody that binds to T cell antigens (e.g., CD 3) and tumor antigens. BiTE has been demonstrated to induce directed lysis of targeted tumor cells, providing a tremendous potential therapy for cancer and other diseases. In some embodiments, the invention provides BiTE that specifically binds CD3 and BCMA. In some embodiments, the BiTE comprises an anti-BCMA antibody or antigen binding fragment provided herein. In some embodiments, the BiTE comprises an scFv against BCMA provided herein.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein comprise a monovalent antigen binding site. In some embodiments, the anti-BCMA antibody or antigen binding fragment comprises a monospecific binding site. In some embodiments, the anti-BCMA antibody or antigen binding fragment comprises a bivalent binding site.
In some embodiments, the anti-BCMA antibody or antigen binding fragment is a monoclonal antibody or antigen binding fragment. Monoclonal antibodies may be prepared by any method known to those skilled in the art. One exemplary method is to screen a protein expression library, such as a phage or ribosome display library. Phage display is described, for example, in Ladner et al, U.S. Pat. nos. 5,223,409; smith (1985) Science 228:1315-1317; and WO 92/18619. In some embodiments, the recombinant monoclonal antibodies are isolated from phage display libraries capable of expressing variable regions or CDRs of the desired species. Screening of phage libraries can be accomplished by a variety of techniques known in the art.
In some embodiments, monoclonal antibodies are prepared using hybridoma methods known to those skilled in the art. For example, mice, rats, rabbits, hamsters or other suitable host animals are immunized as described above using a hybridoma method. In some embodiments, the lymphocyte is immunized in vitro. In some embodiments, the immune antigen is a human protein or fragment thereof. In some embodiments, the immune antigen is a human protein or fragment thereof.
Following immunization, lymphocytes are isolated and fused with a suitable myeloma cell line using, for example, polyethylene glycol. Hybridoma cells were selected using a dedicated medium known in the art, unfused lymphocytes and myeloma cells being unable to survive the selection process. Hybridomas producing monoclonal antibodies to the selected antigen can be identified by a variety of methods, including, but not limited to, immunoprecipitation, immunoblotting, and in vitro binding assays (e.g., flow cytometry, FACS, ELISA, SPR (e.g., biacore), and radioimmunoassay). Once hybridoma cells that produce antibodies of the desired specificity, affinity, and/or activity are identified, the clones can be subcloned by limiting dilution or other techniques. Hybridomas can be propagated in vitro culture using standard methods, and can also be propagated in vivo as animal ascites tumors. The monoclonal antibodies may be purified from the culture medium or ascites fluid according to methods standard in the art, including but not limited to, affinity chromatography, ion exchange chromatography, gel electrophoresis, and dialysis.
In some embodiments, monoclonal antibodies are prepared using recombinant DNA techniques known to those skilled in the art. For example, polynucleotides encoding antibodies are isolated from mature B cells or hybridoma cells, and the genes encoding the heavy and light chains of the antibodies are specifically amplified by, for example, RT-PCR using oligonucleotide primers and their sequences are determined using standard techniques. The isolated polynucleotides encoding the heavy and light chains are then cloned into suitable expression vectors that produce monoclonal antibodies when transfected into host cells such as e.coli, simian COS cells, chinese Hamster Ovary (CHO) cells, or myeloma cells, which otherwise do not produce immunoglobulins.
In some embodiments, the monoclonal antibody is modified by using recombinant DNA techniques to produce an alternative antibody. In some embodiments, the light and heavy chain constant regions of the mouse monoclonal antibody are replaced with the constant regions of the human antibody to generate a chimeric antibody. In some embodiments, the constant region is truncated or removed to generate an antibody fragment of the desired monoclonal antibody. In some embodiments, site-directed or high-density mutations in the variable regions are used to optimize the specificity and/or affinity of the monoclonal antibody.
In some embodiments, the anti-BCMA antibody or antigen binding fragment is a humanized antibody or antigen binding fragment. Various methods of preparing humanized antibodies are known in the art. Methods for achieving high affinity binding to humanized antibodies are known in the art. One non-limiting example of such a method is the hypermutation of the variable region and the selection of cells expressing such high affinity antibodies (affinity maturation). In addition to using a display library, specific antigens (e.g., recombinant BCMA or epitopes thereof) can be used to immunize non-human animals, such as rodents. In certain embodiments, rodent antigen-binding fragments (e.g., mouse antigen-binding fragments) can be prepared and isolated using methods known in the art and/or disclosed herein. In some embodiments, the mice can be immunized with an antigen (e.g., recombinant BCMA or an epitope thereof).
In some embodiments, the anti-BCMA antibody or antigen binding fragment is a human antibody or antigen binding fragment. Human antibodies can be prepared using a variety of techniques known in the art. In some embodiments, the human antibody is produced by an immortalized human B lymphocyte immunized in vitro. In some embodiments, the human antibody is produced by lymphocytes isolated from an immunized individual. In any case, antibody-producing cells can be prepared and isolated, the antibody being directed against the target antigen. In some embodiments, the human antibody is selected from a phage library, wherein the phage library expresses the human antibody. Alternatively, phage display technology can be used to produce human antibodies and antibody fragments in vitro, from immunoglobulin variable region gene libraries of non-immunized donors. Techniques for generating and using antibody phage libraries are well known in the art. Once the antibodies are identified, affinity maturation techniques known in the art can be used to generate higher affinity human antibodies, including but not limited to chain replacement and site-directed mutagenesis. In some embodiments, the human antibodies are produced in transgenic mice containing human immunoglobulin loci. After immunization, these mice were able to produce fully human antibodies without endogenous immunoglobulin production.
The specific CDR sequences defined in the present invention are generally based on a combination of Kabat and Chothia definitions. However, it is understood that references to one or more heavy chain CDRs, and/or one or more light chain CDRs, of a specific antibody include all CDR definitions known to those of skill in the art.
The anti-BCMA antibodies or antigen binding fragments provided by the invention include the following clones: BCMA31. The sequence features are as follows.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein comprise one, two, three, four, five, and/or six CDRs in any one of the antibodies described herein. In some embodiments, an anti-BCMA antibody or antigen binding fragment provided by the present invention includes a VL comprising one, two, and/or three VL CDRs in table 1. In some embodiments, an anti-BCMA antibody or antigen binding fragment provided by the present invention comprises a VH comprising one, two, and/or three VH CDRs in table 2. In some embodiments, the anti-BCMA antibodies or antigen binding fragments provided herein include one, two, and/or three VL CDRs from table 1 and one, two, and/or three VH CDRs from table 2.
TABLE 1 amino acid sequence of the light chain variable region CDR (VL CDR) of BCMA31
Figure BDA0003670489370000171
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TABLE 2 amino acid sequence of heavy chain variable region CDRs (VH CDRs) of BCMA31
Figure BDA0003670489370000172
In some embodiments, the anti-BCMA antibody or antigen binding fragment thereof comprises a humanized antibody or antigen binding fragment. In some embodiments, an anti-BCMA antibody or antigen binding fragment thereof comprises a VL CDR1, a VL CDR2, a VL CDR3, a VH CDR1, a VH CDR2, and/or a VH CDR3 of an antibody or antigen binding fragment of the invention. In some embodiments, an anti-BCMA antibody or antigen binding fragment thereof comprises variants of the antibodies or antigen binding fragments described herein. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 30 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 25 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 20 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 15 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 10 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 5 conserved amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the variants of the anti-BCMA antibody or antigen binding fragment include substitutions, additions, and/or deletions of 1 to 3 amino acids in the anti-BCMA antibody or antigen binding fragment. In some embodiments, the amino acid substitutions, additions and/or deletions are conservative amino acid substitutions. In some embodiments, the conservative amino acid substitutions are located in CDRs of the antibody or antigen binding fragment. In some embodiments, the conservative amino acid substitutions are not in the CDRs of the antibody or antigen binding fragment. In some embodiments, the conservative amino acid substitutions are located in the framework region of the antibody or antigen binding fragment.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA), comprising a light chain variable region (VL) comprising (1) a light chain CDR1 (VL CDR 1) having the amino acid sequence shown by SEQ ID NO: 8; (2) Light chain CDR2 (VL CDR 2) having the amino acid sequence shown by SEQ ID NO. 18; or (3) a light chain CDR3 (VL CDR 3) having the amino acid sequence shown by SEQ ID NO. 28; or a variant thereof having up to about 3, about 5, about 8, about 10, about 12, or about 15 amino acid substitutions, additions and/or deletions in the VL CDRs. In some embodiments, the variants have about 5 amino acid substitutions, additions and/or deletions in the VL CDRs.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA), comprising VL comprising (1) VL CDR1 having the amino acid sequence shown by SEQ ID No. 8; (2) VL CDR2 having the amino acid sequence shown by SEQ ID NO. 18; and (3) VL CDR3 having the amino acid sequence set forth in SEQ ID NO. 28; or a variant thereof having up to about 3, about 5, about 8, about 10, about 12, or about 15 amino acid substitutions, additions and/or deletions in the VL CDRs. In some embodiments, the variants have up to about 5 amino acid substitutions, additions and/or deletions in the VL CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) comprising a heavy chain variable region (VH) comprising (1) a heavy chain CDR1 (VH CDR 1) having the amino acid sequence shown by SEQ ID NO: 39; (2) Heavy chain CDR2 (VH CDR 2) having the amino acid sequence shown by SEQ ID NO. 51; or (3) a heavy chain CDR3 (VH CDR 3) having the amino acid sequence shown by SEQ ID NO. 63; or a variant thereof having up to about 3, about 5, about 8, about 10, about 12, or about 15 amino acid substitutions, additions, and/or deletions in the VH CDRs. In some embodiments, the variants have up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) comprising a VH comprising (1) VH CDR1 having the amino acid sequence shown by SEQ ID No. 39; (2) A VH CDR2 having the amino acid sequence shown by SEQ ID NO. 51; and (3) a VH CDR3 having the amino acid sequence shown by SEQ ID NO. 63; or a variant thereof having up to about 3, about 5, about 8, about 10, about 12, or about 15 amino acid substitutions, additions and/or deletions in the VH CDRs. In some embodiments, the variants have up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) comprising (a) a VL comprising (1) a VL CDR1 having the amino acid sequence shown by SEQ ID No. 8; (2) VL CDR2 having the amino acid sequence shown by SEQ ID NO. 18; and (3) VL CDR3 having the amino acid sequence set forth in SEQ ID NO. 28; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions; and (b) a VH comprising (1) a VH CDR1 having the amino acid sequence shown by SEQ ID No. 39; (2) A VH CDR2 having an amino acid sequence consisting of SEQ ID NO: 51; and (3) a VH CDR3 having the amino acid sequence shown by SEQ ID NO. 63; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) having a VL, wherein said VL comprises VL CDR1, CDR2, and CDR3, wherein said VL CDR1, CDR2, and CDR3 have the amino acid sequences shown in SEQ ID NOs 8, 18, and 28, respectively; or a variant thereof having up to about 3, 5, 8, 10, 12, or 15 amino acid substitutions, additions, and/or deletions in the VL CDRs. In some embodiments, the variants have up to about 5 amino acid substitutions, additions and/or deletions in the VL CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) having a VH, wherein said VH comprises VH CDR1, CDR2, and CDR3, said VH CDR1, CDR2, and CDR3 having the amino acid sequences set forth in SEQ ID NOs 39, 51, and 63, respectively; or a variant thereof having up to about 3, 5, 8, 10, 12 or 15 amino acid substitutions, additions and/or deletions in the VH CDRs. In some embodiments, the variants have up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA) having VL and VH. In some embodiments, the VL and VH are linked by a linker. The connector may be a flexible connector or a rigid connector. In some embodiments, the linker has an amino acid sequence of (GGGGS) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 155). In some embodiments, the linker has an amino acid sequence of (EAAAK) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 156). In some embodiments, the linker has an amino acid sequence of (PA) nP, n=1, 2, 3, 4, or 5 (SEQ ID NO: 157). In some embodiments, the linker has the amino acid sequence of GGGGSGGGGSGGGGS (SEQ ID NO: 158).
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) having VL and VH, wherein (a) the VL comprises VL CDR1, CDR2, and CDR3, the VL CDR1, CDR2, and CDR3 having the amino acid sequences shown in SEQ ID NOs 8, 18, and 28, respectively; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VL CDRs; and (b) the VH comprises VH CDR1, CDR2 and CDR3, the VH CDR1, CDR2 and CDR3 having the amino acid sequences shown in SEQ ID NOs 39, 51 and 63, respectively; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA) having VL and VH, wherein the VL comprises VL CDR1, CDR2, and CDR3, and the VH comprises VH CDR1, CDR2, and CDR3, wherein the VL CDR1, VL CDR2, VL CDR3, VH CDR1, VH CDR2, and VH CDR3 have the amino acid sequences set forth in SEQ ID NOs 8, 18, 28, 39, 51, and 63, respectively; or variants thereof having up to about 5 amino acid substitutions, additions and/or deletions in these CDRs.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) having a VL comprising (1) a VL CDR1 having the amino acid sequence shown in SEQ ID No. 8, (2) a VL CDR2 having the amino acid sequence shown in SEQ ID No. 18, or (3) a VL CDR3 having the amino acid sequence shown in SEQ ID No. 28. The VL may have a VL CDR1, a VL CDR2 and a VL CDR3, the VL CDR1, the VL CDR2 and the VL CDR3 having the amino acid sequences shown in SEQ ID NOS 8, 18 and 28, respectively. In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) having a VH comprising (1) a VH CDR1 having the amino acid sequence shown in SEQ ID No. 39; (2) A VH CDR2 having the amino acid sequence shown in SEQ ID NO. 51; or (3) a VH CDR3 having the amino acid sequence shown in SEQ ID NO. 63. The VH may have a VH CDR1, a VH CDR2 and a VH CDR3, the VH CDR1, VH CDR2 and VH CDR3 having the amino acid sequences shown in SEQ ID NO 39, 51 and 63 respectively. In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA), comprising (a) a VL comprising VL CDR1, VL CDR2, and VL CDR3, the VL CDR1, VL CDR2, and VL CDR3 having the amino acid sequences shown in SEQ ID NOs 8, 18, and 28, respectively; and (b) a VH comprising a VH CDR1, a VH CDR2 and a VH CDR3, said VH CDR1, VH CDR2 and VH CDR3 having the amino acid sequences shown in SEQ ID NOs 39, 51 and 63, respectively.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA), comprising a VL having at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to the amino acid sequence set forth by SEQ ID No. 75. In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA), comprising a VH having at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% sequence identity to the amino acid sequence shown by SEQ ID NO: 87.
TABLE 3 amino acid sequences of the light chain variable region (VLs) and heavy chain variable region (VHs) of BCMA31
Figure BDA0003670489370000211
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA), comprising: (a) VL having at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to the sequence set forth in SEQ ID No. 75; and (b) a VH having at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to the amino acid sequence set forth in SEQ ID No. 87.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA) comprising VL wherein said VL has at least 80%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to the sequence set forth in SEQ ID No. 75. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VL that has at least 85% sequence identity to the sequence set forth in SEQ ID NO. 75. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VL that has at least 90% sequence identity to the sequence set forth in SEQ ID NO. 75. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VL that has at least 95% sequence identity to the sequence set forth in SEQ ID NO. 75. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VL that has at least 98% sequence identity to the sequence set forth in SEQ ID NO. 75. In some embodiments, an anti-BCMA (e.g., human BCMA) antibody or antigen binding fragment thereof provided herein includes a VL having an amino acid sequence shown in SEQ ID No. 75.
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA) comprising a VH wherein said VH has at least 80%, at least 85%, at least 86%, at least 87%, at least 88%, at least 89%, at least 90%, at least 91%, at least 92%, at least 93%, at least 94%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to the sequence set forth in SEQ ID No. 87. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VH that has at least 85% sequence identity to the sequence set forth in SEQ ID NO. 87. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VH that has at least 90% sequence identity to the sequence set forth in SEQ ID NO. 87. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VH that has at least 95% sequence identity to the sequence set forth in SEQ ID NO. 87. In some embodiments, the anti-BCMA antibody, or antigen binding fragment thereof, includes a VH that has at least 98% sequence identity to the sequence set forth in SEQ ID NO. 87. In some embodiments, an anti-BCMA (e.g., human BCMA) antibody or antigen binding fragment thereof provided herein includes a VH having the amino acid sequence shown in SEQ ID No. 87.
The anti-BCMA antibody or antigen binding fragment thereof may comprise a combination of any VL disclosed herein and any VH disclosed herein. In some embodiments, the VL and VH are linked by a linker. The connector may be a flexible connector or a rigid connector. In some embodiments, the linker has an amino acid sequence of (GGGGS) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 155). In some embodiments, the linker has an amino acid sequence of (EAAAK) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 156). In some embodiments, the linker has an amino acid sequence of (PA) nP, n=1, 2, 3, 4, or 5 (SEQ ID NO: 157). In some embodiments, the linker has the amino acid sequence of GGGGSGGGGSGGGGS (SEQ ID NO: 158).
In some embodiments, the invention provides antibodies or antigen-binding fragments thereof that specifically bind BCMA (e.g., human BCMA), comprising VL and VH, wherein the VL and VH have the amino acid sequences shown in SEQ ID NOs 75 and 87, respectively.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA), comprising (a) a VL comprising VL CDRs 1, 2 and 3, said VL CDRs 1, 2 and 3 being derived from a VL having the amino acid sequence shown by SEQ ID No. 75; and/or (b) a VH comprising VH CDRs 1, 2 and 3, said VH CDRs 1, 2 and 3 being derived from a VH having the amino acid sequence shown by SEQ ID No. 87. In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) comprising VL, wherein said VL comprises VL CDRs 1, 2 and 3, wherein said VL CDRs 1, 2 and 3 are derived from a VL having the amino acid sequence set forth in SEQ ID No. 75. In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA) comprising a VH, wherein said VH comprises VH CDRs 1, 2 and 3, said VH CDRs 1, 2 and 3 being derived from a VH having the amino acid sequence shown in SEQ ID No. 87.
In some embodiments, the invention provides an antibody or antigen-binding fragment thereof that specifically binds BCMA (e.g., human BCMA), comprising VL and VH, wherein the VL comprises VL CDR1, CDR2, and CDR3, the VL CDR1, CDR2, and CDR3 are derived from a VL having the amino acid sequence set forth in SEQ ID No. 75, and the VH comprises VH CDR1, CDR2, and CDR3, the VH CDR1, CDR2, and CDR3 are derived from a VH having the amino acid sequence set forth in SEQ ID No. 87.
In some embodiments, the anti-BCMA antibodies, or antigen-binding fragments thereof, provided herein are scFv labeled BCMA31 (SEQ ID NO: 123). In some embodiments, the anti-BCMA antibodies, or antigen binding fragments thereof, provided herein have at least about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, or about 99% sequence identity to the sequence shown as SEQ ID NO. 123. In some embodiments, the anti-BCMA antibodies, or antigen-binding fragments thereof, provided herein, have a VL (SEQ ID NO: 75) derived from BCMA 31. In some embodiments, the anti-BCMA antibodies, or antigen-binding fragments thereof, provided herein, have a VH (SEQ ID NO: 87) derived from BCMA 31. The anti-BCMA antibodies or antigen binding fragments thereof provided herein may have both VL and VH derived from BCMA 31. In some embodiments, the anti-BCMA antibodies or antigen binding fragments thereof provided herein have a VL comprising VL CDRs 1, 2, and 3, the VL CDRs 1, 2, and 3 being derived from a VL from BCMA31 (SEQ ID NO: 75). In some embodiments, the anti-BCMA antibodies or antigen binding fragments thereof provided herein have a VH comprising VH CDRs 1, 2, and 3, the VH CDRs 1, 2, and 3 being derived from VH from BCMA31 (SEQ ID NO: 87). The anti-BCMA antibodies or antigen-binding fragments thereof provided herein have a VL comprising VL CDRs 1, 2 and 3 and a VH comprising VH CDRs 1, 2 and 3, wherein the VL CDRs 1, 2 and 3, and VH CDRs 1, 2 and 3 can be derived from VL and VH, respectively, from BCMA 31. In some embodiments, an anti-BCMA antibody or antigen binding fragment thereof provided herein is a variant of BCMA 31. The BCMA31 variant may have a VL that is a variant of BCMA31 VL having up to about 5 amino acid substitutions, additions and/or deletions in the sequence shown in SEQ ID No. 75. The BCMA31 variant may have a VH which is a variant of BCMA31 VH having up to about 5 amino acid substitutions, additions and/or deletions in the sequence shown in SEQ ID No. 87. The amino acid substitutions, additions and/or deletions may occur in the VH CDRs or VL CDRs. In some embodiments, the amino acid substitutions, additions and/or deletions are not in the CDRs. In some embodiments, variants of BCMA31 have up to about 5 conservative amino acid substitutions. In some embodiments, variants of BCMA31 have up to about 3 conservative amino acid substitutions.
In some embodiments, the invention also provides antibodies or antigen-binding fragments that compete with the antibodies or antigen-binding fragments provided above for binding to BCMA (e.g., human BCMA). An antibody that "competes with another antibody for binding to a target" refers to an antibody that inhibits (partially or fully) the binding of another antibody to the target. Whether or not two antibodies compete with each other to bind to a target, i.e., whether or not and to what extent one antibody inhibits binding of the other antibody to the target, known competition assays (e.g.,
Figure BDA0003670489370000241
surface Plasmon Resonance (SPR) analysis). In some embodiments, an anti-BCMA antibody or antigen binding fragment competes at least 50%, 60%, 70%, 80%, 90% or 100% with another antibody or antigen binding fragment and inhibits binding of the other antibody or antigen binding fragment to BCMA. Competition assays may be performed as described, for example, in Ed Harlow and David Lane, cold Spring Harb Protoc;2006; doi.l0.H0l/pdb.prot4277 or "Using Antibodies" Chapter 11,Cold Spring Harbor Laboratory Press,Cold Spring Harbor,NY,USA 1999 written by Ed Harlow and David Lane.
In some embodiments, the invention provides antibodies or antigen binding fragments that compete with BCMA31 for binding to BCMA.
The invention further contemplates other variants and equivalents substantially homologous to the recombinant, monoclonal, chimeric, humanized and human antibodies or antibody fragments thereof described herein. In some embodiments, it is desirable to increase the binding affinity of the antibody. In some embodiments, it is desirable to modulate biological properties of antibodies, including but not limited to specificity, thermostability, expression levels, effector function, glycosylation, immunogenicity, and/or solubility. Those skilled in the art will appreciate that amino acid changes may alter the post-translational processes of the antibody, e.g., alter the number or position of glycosylation sites or alter membrane anchoring properties.
A variant may be a substitution, deletion, or insertion of one or more nucleotides encoding an antibody or polypeptide that results in a change in the amino acid sequence relative to the native antibody or polypeptide sequence. In some embodiments, the amino acid substitution is a result of substituting one amino acid for another amino acid having similar structure and/or chemical properties, such as substituting serine for leucine, e.g., a conservative amino acid substitution. Insertions or deletions may be in the range of about 1 to 5 amino acids. In some embodiments, substitutions, deletions, or insertions include fewer than 25 amino acid substitutions, fewer than 20 amino acid substitutions, fewer than 15 amino acid substitutions, fewer than 10 amino acid substitutions, fewer than 5 amino acid substitutions, fewer than 4 amino acid substitutions, fewer than 3 amino acid substitutions, or fewer than 2 amino acid substitutions relative to the parent molecule. In some embodiments, variations in biologically useful and/or related amino acid sequences can be determined by systematically making insertions, deletions, or substitutions in the sequence, and detecting the activity of the resulting variant protein as compared to the parent protein.
The constant regions of antibodies are known in the art to mediate a number of effector functions, and these effector functions may vary depending on the isotype of the antibody. For example, the C1 region of complement binds to the Fc region of an IgG or IgM antibody (binds to an antigen) to activate the complement system. Activation of complement plays an important role in the opsonization and lysis of cellular pathogens. Activation of the complement also stimulates inflammatory responses and is involved in autoimmune hypersensitivity reactions. Furthermore, the Fc region of an antibody may bind to cells expressing Fc receptors (FcR). There are many Fc receptors specific for different classes of antibodies, including IgG (gamma receptor), igE (epsilon receptor), igA (alpha receptor), and IgM (mu receptor). Binding of antibodies to cell surface Fc receptors initiates a number of important and diverse biological responses including phagocytosis and destruction of antibody-coated particles, clearance of immune complexes, killing of cytolytic antibody-coated target cells (known as antibody-dependent cellular cytotoxicity or ADCC), release of inflammatory mediators, placental transfer, and control of immunoglobulin production. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgA antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgD antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgE antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgG antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgM antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgG1 antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgG2 antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgG3 antibody. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises at least one constant region of a human IgG4 antibody.
In some embodiments, at least one or more constant regions in an anti-BCMA antibody or antigen binding fragment of the invention have been modified or deleted. In some embodiments, the antibody comprises modifications to one or more of the three heavy chain constant regions (CH 1, CH2, or CH 3), and/or modifications to the light chain constant region (CL). In some embodiments, the heavy chain constant region of the modified antibody comprises at least one human constant region. In some embodiments, the heavy chain constant region of the modified antibody comprises more than one human constant region. In some embodiments, the modification to the constant region comprises the addition, deletion, or substitution of one or more amino acids in one or more domains. In some embodiments, one or more domains are partially or completely deleted from the constant region of the modified antibody. In some embodiments, the entire CH2 domain (Δch2 construct) is removed from the antibody. In some embodiments, the deleted constant regions are replaced with short amino acid spacers to provide some of the molecular flexibility normally afforded by deleted constant regions. In some embodiments, the modified antibody comprises a CH3 domain fused directly to the antibody hinge region. In some embodiments, the modified antibodies include a peptide spacer interposed between the hinge region and the modified CH2 and/or CH3 domains.
In some embodiments, the anti-BCMA antibody or antigen binding fragment comprises one Fc region. In some embodiments, the Fc region is fused by a hinge. The hinge may be an IgG1 hinge, an IgG2 hinge or an IgG3 hinge. The amino acid sequences of the Fc regions of human IgG1, igG2, igG3, and IgG4 are known to those of ordinary skill in the art. In some cases, fc regions with amino acid variations are found in natural antibodies. In some embodiments, modified antibodies (e.g., modified Fc regions) provide altered effector functions, which in turn affect the biological properties of the antibodies. For example, in some embodiments, deletion or inactivation of the constant region (by point mutation or other means) reduces binding of the modified antibody to the Fc receptor upon circulation. In some embodiments, the constant region modification reduces the immunogenicity of the antibody. In some embodiments, the constant region modification increases the serum half-life of the antibody. In some embodiments, the constant region modification reduces the serum half-life of the antibody. In some embodiments, the constant region modification reduces or eliminates ADCC and/or Complement Dependent Cytotoxicity (CDC) of the antibody. In some embodiments, substitution of a particular amino acid in the human IgG1 Fc region with a corresponding IgG2 or IgG4 residue reduces effector functions (e.g., ADCC and CDC) in the modified antibody. In some embodiments, the antibody does not have one or more effector functions (e.g., a null-response antibody). In some embodiments, the antibody has no ADCC activity and/or no CDC activity. In some embodiments, the antibody does not bind to Fc receptors and/or complement factors. In some embodiments, the antibody lacks effector function. In some embodiments, the constant region modification increases or enhances ADCC and/or CDC of the antibody. In some embodiments, the constant region is modified to eliminate disulfide bonds or oligosaccharide moieties. In some embodiments, the constant region is modified to add/replace one or more amino acids, thereby providing one or more cytotoxin, oligosaccharide, or carbohydrate attachment sites. In some embodiments, an anti-BCMA antibody or antigen binding fragment comprises a variant Fc region that is genetically engineered by substitution at a particular amino acid position as compared to the native Fc region. In some embodiments, an anti-BCMA antibody or antigen binding fragment of the invention comprises an IgG1 heavy chain constant region comprising one or more amino acid substitutions selected from the group consisting of K214R, L234A, L235E, G237A, D356E and L358M (EU numbering). In some embodiments, the IgG1 heavy chain constant region comprises one or more amino acid substitutions selected from the group consisting of K214R, L234A, L235E, G237A, A S, P331S, D356E and L358M (EU numbering). In some embodiments, the IgG1 heavy chain constant region comprises one or more amino acid substitutions selected from the group consisting of K214R, C226S, C S and P238S (EU numbering). In some embodiments, the IgG1 heavy chain constant region comprises one or more amino acid substitutions selected from the group consisting of K214R, D356E and L358M (EU numbering). In some embodiments, the IgG1 heavy chain constant region comprises one or more amino acid substitutions selected from the group consisting of S131C, K133R, G137E, G S, Q196K, I199T, N203D, K214R, C226S, C229S and P238S (EU numbering).
In some embodiments, variants may include the addition of amino acid residues at the amino and/or carboxy terminus of an antibody or polypeptide. The length of the added amino acid residues may range from one to one hundred or more residues. In some embodiments, the variant comprises an N-terminal methionyl residue. In some embodiments, the variants comprise other polypeptides/proteins (e.g., fc regions) to produce fusion proteins. In some embodiments, the variants are designed to be detectable and may include a detectable label and/or protein (e.g., a fluorescent label or enzyme).
The variant antibodies or antigen binding fragments of the invention may be produced using methods known in the art, including, but not limited to, site-directed mutagenesis, alanine-scanning mutagenesis, and PCR mutagenesis.
In some embodiments, variants of the disclosed anti-BCMA antibodies or antigen binding fragments can retain BCMA binding ability to a similar degree, the same degree, or a higher degree than the parent antibody or antigen binding fragment. In some embodiments, the variant may have at least about 80%, about 85%, about 90%, about 91%, about 92%, about 93%, about 94%, about 95%, about 96%, about 97%, about 98%, about 99% or more identity in amino acid sequence to the parent antibody or antigen binding fragment. In some embodiments, variants of an anti-BCMA antibody or antigen binding fragment include amino acid sequences of a parent anti-BCMA antibody or antigen binding fragment having one or more conservative amino acid substitutions. Conservative amino acid substitutions are known in the art, and include those in which one amino acid having a particular physical and/or chemical property is replaced with another amino acid having the same or similar chemical or physical property.
In some embodiments, variants of an anti-BCMA antibody or antigen binding fragment include the amino acid sequence of a parent antibody or antigen binding fragment having one or more non-conservative amino acid substitutions. In some embodiments, variants of an anti-BCMA antibody or antigen binding fragment include an amino acid sequence of a parent binding antibody or antigen binding fragment having one or more non-conservative amino acid substitutions, wherein the one or more non-conservative amino acid substitutions do not interfere with or inhibit one or more biological activities (e.g., BCMA binding) of the variant. In certain embodiments, the one or more conservative amino acid substitutions, and/or the one or more non-conservative amino acid substitutions, may enhance the biological activity of the variant, such that the biological activity of the functional variant is increased as compared to the parental binding moiety.
In some embodiments, the variants can have 1, 2, 3, 4, or 5 amino acid substitutions in the binding portion of the CDRs (e.g., VH CDR1, VH CDR2, VH CDR3, VL CDR1, VL CDR2, and VL CDR 3).
In some embodiments, an anti-BCMA antibody or antigen binding fragment of the present invention is chemically modified naturally or by intervention. In some embodiments, the anti-BCMA antibody or antigen binding fragment is chemically modified by glycosylation, acetylation, pegylation, phosphorylation, amidation, derivatization by known protecting/blocking groups, proteolytic cleavage, and/or attachment to a cellular ligand or other protein. Any of a number of chemical modifications may be made by known techniques. The anti-BCMA antibody or antigen binding fragment may include one or more amino acid analogs (including, for example, unnatural amino acids), as well as other modifying groups known in the art.
In some embodiments, an anti-BCMA antibody or antigen binding fragment (e.g., an antibody) is administered at a dissociation constant (K) of about 1 μm or less, about 100nM or less, about 40nM or less, about 20nM or less, about 10nM or less, about 1nM or less, about 0.1nM or less, about 50pM or less, about 10pM or less, or about 1pM or less D ) BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 20nM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 10nM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 1nM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 0.5nM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 0.1nM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, an anti-BCMA antibody or anti-BCMA antibodyThe pro-binding fragment has a K of about 50pM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 25pM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 10pM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the anti-BCMA antibody or antigen binding fragment has a K of about 1pM or less D BCMA (e.g., human BCMA) is bound. In some embodiments, the dissociation constant of the binding agent (e.g., antibody) for BCMA is the dissociation constant determined using BCMA protein immobilized on a Biacore chip and the binding agent flowing through the chip. In some embodiments, the dissociation constant of the binding agent (e.g., antibody) for BCMA is the dissociation constant determined using the binding agent captured with anti-human IgG antibodies on the Biacore chip and the soluble BCMA flowing through the chip.
The anti-BCMA antibodies or antigen binding fragments of the invention may be analyzed for their physical, chemical, and/or biological properties by various methods known in the art. In some embodiments, an anti-BCMA antibody is tested for its ability to bind BCMA (e.g., human BCMA). Binding assays include, but are not limited to, SPR (e.g., biacore), ELISA, and FACS. Furthermore, antibodies can be evaluated in terms of solubility, stability, thermostability, viscosity, expression level, expression quality, and/or purification efficiency.
Epitope identification is a method of recognizing a binding site, region or epitope on a target protein to which an antibody binds. Various methods are known in the art for mapping epitopes to target proteins. These methods include mutations including, but not limited to, shotgun mutations, site-directed mutagenesis, and alanine scanning; these methods also include domain or fragment scanning; peptide scanning (e.g., pepscan technology); display methods (e.g., phage display, microbial display, and ribosome/mRNA display); methods involving proteolysis and mass spectrometry; structural measurements (e.g., X-ray crystallography and NMR). In some embodiments, the anti-BCMA antibodies or antigen binding fragments of the present invention are characterized by assays including, but not limited to, N-terminal sequencing, amino acid analysis, HPLC, mass spectrometry, ion exchange chromatography, and papain digestion.
In some embodiments, the anti-BCMA antibody or antigen binding fragment binds to a cytotoxic agent or cytotoxic moiety. In some embodiments, an anti-BCMA antibody or antigen binding fragment is conjugated to a cytotoxic agent to form an ADC (antibody-drug conjugate). In some embodiments, the cytotoxic moiety is a chemotherapeutic agent, including but not limited to methotrexate, doxorubicin (adriamycin/doxorubicin), melphalan, mitomycin C, chlorambucil, duocarmycin (duocarmycin), daunomycin, pyrrolobenzodiazepines (PBDs), or other intercalating agents. In some embodiments, the cytotoxic moiety is a microtubule inhibitor, including, but not limited to, auristatins, maytansinoids (e.g., DM1 and DM 4), and tubulin (tubulysins). In some embodiments, the cytotoxic moiety is an enzymatically active toxin of bacterial, fungal, plant, or animal origin, or a fragment thereof, including but not limited to diphtheria chain, non-binding active fragments of diphtheria toxin, exotoxin a chain, ricin a chain, abrin a chain, pristina root toxin a chain, α -sarcins, aleurone, carnosine, pokeweed protein (PAPI, PAPII, and PAP-S), balsam pear inhibitors, curcin (curcin), crotin (crotin), soapbark (Sapaonaria officinalis) inhibitors, gelonin, mitomycin, restrictocin, phenomycin, ionomycin, and trichothecenes. In some embodiments, the antibodies bind to one or more small molecule toxins, such as card Li Jimei, maytansinoids, trichothenes, and CC1065.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments of the present invention are conjugated to a detectable substance or molecule that enables the agent to be used for diagnosis and/or detection. The detectable substance may include, but is not limited to, enzymes such as horseradish peroxidase, alkaline phosphatase, beta-galactosidase, and acetylcholinesterase; also included are prosthetic groups such as biotin and flavins; fluorescent substances, such as umbelliferone, fluorescein Isothiocyanate (FITC), rhodamine, tetramethylrhodamine isothiocyanate (TRI)TC), dichlorotriazinamine fluorescein, dansyl chloride, anthocyanin (Cy 3) and phycoerythrin; bioluminescent materials such as luciferase; radioactive materials, e.g. 212 Bi、 14 C、 57 Co、 51 Cr、 67 Cu、 18 F、 68 Ga、 67 Ga、 153 Gd、 159 Gd、 68 Ge、 3 H、 166 Ho、 131 I、 125 I、 123 I、 121 I、 115 In、 113 In、 112 In、 111 In、 140 La、 177 Lu、 54 Mn、 99 Mo、 32 P、 103 Pd、 149 Pm、 142 Pr、 186 Re、 188 Re、 105 Rh、 97 Ru、 35 S、 47 Sc、 75 Se、 153 Sm、 113 Sn、 117 Sn、 85 Sr、 99m Tc、 201 Ti、 133 XE、 90 Y、 69 Yb、 175 Yb、 65 Zn; a positron emitting metal; and a magnetic metal ion positron emitting metal; and magnetic metal ions.
The anti-BCMA antibodies or antigen binding fragments of the present invention may be attached to a solid support. Such solid supports include, but are not limited to, glass, cellulose, polyacrylamide, nylon, polystyrene, polyvinyl chloride or polypropylene. In some embodiments, the immobilized anti-BCMA antibody or antigen binding fragment is used in an immunoassay. In some embodiments, the immobilized anti-BCMA antibody or antigen binding fragment is used to purify an antigen of interest (e.g., human BCMA).
5.3CAR, TCR and genetically engineered immune effector cells
The anti-BCMA antibodies or antigen binding fragments of the invention can be used as part of a Chimeric Antigen Receptor (CAR) or T Cell Receptor (TCR), which can be expressed in immune effector cells for the treatment of cancer. As such, the invention also provides CARs and TCRs that specifically bind BCMA (e.g., human BCMA), immune effector cells expressing such CARs or TCRs, and uses of such cells.
5.3.1TCRs
The present invention provides T Cell Receptors (TCRs) that specifically bind BCMA ("BCMA TCRs"). TCRs are antigen-specific molecules responsible for recognizing antigenic peptides that occur in the context of MHC products on the surface of APCs or any nucleated cells. The system confers to T cells, through their TCR, the potential ability to recognize an array of whole intracellular antigens (including viral proteins) expressed by the cells, which are processed into short peptides, bound to intracellular MHC molecules, and delivered to the surface as peptide-MHC complexes. This system allows foreign proteins (such as mutated cancer antigens or viral proteins) or aberrantly expressed proteins to serve as targets for T cells (e.g., davis and Bjorkman (1988) Nature,334,395-402; davis et al (1998) Annu Rev Immunol,16, 523-544).
The interaction of TCR and peptide-MHC complexes can drive T cells into different activation states, depending on the affinity (or dissociation rate) of the binding. TCR recognition processes allow T cells to distinguish between normal and healthy cells and cells transformed, for example, by viruses or malignancies, by providing a diverse library of TCRs, where there is a high probability that one or more TCRs will be present with binding affinity to foreign peptides bound to MHC molecules above the threshold for stimulating T cell activity (Manning and Kranz (1999) Immunology Today,20, 417-422).
Wild-type TCRs isolated from human or mouse T cell clones identified by in vitro culture have been shown to have relatively low binding affinities (K D =1-300 μΜ) (Davis et al (1998) Annu Rev Immunol,16, 523-544). This is due in part to the negative selection of self peptide-MHC ligands by T cells developing within the thymus (tolerance induction), thus allowing T cells with too high an affinity to be cleared (Starr et al (2003) Annu Rev Immunol,21,139-76). To compensate for these relatively low affinities, T cells evolved a co-receptor system in which cell surface molecules CD4 and CD8 bind to MHC molecules (class II and class I, respectively) and mediate signaling activity in concert with TCRs. CD8 is particularly effective in this process, allowing TCRs with very low affinity (e.g., K D =300 μm) mediate strong antigen-specific activity.
Directed evolution can be used to generate TCRs with higher affinity for specific peptide-MHC complexes. Methods that may be used include yeast display (Holler et al (2003) Nat Immunol,4,55-62; holler et al (2000) Proc Natl Acad Sci U S A,97,5387-92). Phage display (Li et al (2005) Nat Biotechnol,23,349-54), and T cell display ((Chervin et al (2008) J Immunol Methods,339,175-84)) all three methods involve engineering or modifying a common, low affinity TCR that exhibits a wild-type TCR to increase affinity to the cognate peptide-MHC complex (T cell specific original antigen).
Also, in some embodiments, the TCRs provided herein include an anti-BCMA antibody or antigen binding fragment of the invention. The anti-BCMA antibody or antigen binding fragment may be any anti-BCMA antibody or antigen binding fragment described herein. For illustrative purposes, in some embodiments, the TCRs provided herein include anti-BCMA antibodies or antigen binding fragments that can have a VL and a VH, wherein the VL includes VL CDR1, CDR2, and CDR3, and the VH includes VH CDR1, CDR2, and CDR3, and wherein the VL CDR1, VL CDR2, VL CDR3, VH CDR1, VH CDR2, and VH CDR3 have the amino acid sequences set forth in SEQ ID NOs 8, 18, 28, 39, 51, and 63, respectively.
In some embodiments, TCRs provided herein may include an anti-BCMA antibody or antigen binding fragment that is an scFv labeled BCMA 31.
In some embodiments, the TCRs provided herein include an alpha chain and a beta chain. The constant regions of the TCR alpha and beta chains are encoded by TRAC and TRBC, respectively. Human TRAC may have a number corresponding to UniProtKB/Swiss-Prot: p01848.2 (accession number: P01848.2 GI: 1431906459). Human TRBC may have an amino acid sequence corresponding to the GenBank sequence (accession number: ALC78509.1 GI: 924924895). In some embodiments, the TCRs provided herein include a TCR a chain comprising an anti-BCMA antibody or antigen binding fragment provided herein. In some embodiments, the TCRs provided herein include a TCR β chain comprising an anti-BCMA antibody or antigen binding fragment provided herein. In some embodiments, the TCR comprises a gamma chain and a delta chain. The constant regions of the TCR gamma and delta chains are encoded by TRGC and TRDC, respectively. Human TRGC can have a sequence corresponding to UniProtKB/Swiss-Prot: P0CF51.1 (accession number: P0CF51.1 GI: 294863156), or corresponds to UniProtKB/Swiss-Prot: p03986.2 (accession number: P03986.2 GI: 1531253869). Human TRDC may have a sequence corresponding to UniProtKB/Swiss-Prot: B7Z8K6.2 (accession number: B7Z8K6.2 GI: 294863191). In some embodiments, the TCRs provided herein include a TCR gamma chain comprising an anti-BCMA antibody or antigen binding fragment provided herein. In some embodiments, the TCRs provided herein include a TCR delta chain comprising an anti-BCMA antibody or antigen binding fragment provided herein.
5.3.2CARs
CARs are engineered receptors that provide antigen binding and immune effector cell activation functions. The CAR can be used to specifically transplant an antibody (e.g., a monoclonal antibody) onto an immune effector cell (e.g., a T cell, NK cell, or macrophage). The CARs re-target immune effector cells (e.g., T cells) to tumor surface antigens in an HLA-independent manner (Sadelain et al, nat. Rev. Cancer.3 (1): 35-45 (2003); sadelain et al, cancer Discovery 3 (4): 388-398 (2013); rafiq and Brentjens (2016). Nat Rev Clin Oncol (6): 370-383). Typical structures of CAR molecules include extracellular antigen binding domains (e.g., scFv), transmembrane domains (TM), and intracellular signaling domains. The extracellular antigen binding domain of a CAR is typically derived from a monoclonal antibody (mAb) or receptor or ligand thereof. Binding of the CAR to the antigen can trigger phosphorylation of immune receptor tyrosine activation motifs (ITAMs) in the intracellular domain, thereby initiating the signaling cascade required for cytolytic induction, cytokine secretion and proliferation. T Cells (CART) expressing CARs can be divided into three generations, depending on the presence of intracellular co-stimulatory signals.
In some embodiments, the invention provides a CAR that specifically binds BCMA ("BCMA CAR"). In some embodiments, the CAR may be a "first generation", "second generation" or "third generation" CAR (see, e.g., sadelain et al, cancer Discov.3 (4): 388-398 (2013); jensen et al, immunol. Rev.257:127-133 (2014); sharpe et al, dis. Model Mech.8 (4): 337-350 (2015); june et al (2018), science 359 (6382): 1361-1365).
"first generation" CARs typically consist of an extracellular antigen-binding domain, e.g., a single chain variable region fragment (scFv), fused to a transmembrane domain, which is fused to the cytoplasmic/intracellular domain of a T cell receptor chain. "first generation" CARs typically have an intracellular domain from the cd3ζ -chain, which is the primary transmitter of endogenous T Cell Receptor (TCRs) signals. "first generation" CARs can provide de novo antigen recognition and elicit CD4 through the CD3 zeta chain signaling domain in a single fusion molecule + T cells and CD8 + Activation of T cells is independent of HLA-mediated antigen presentation. A "second generation" CAR comprises a Cancer antigen binding domain fused to an intracellular signaling domain capable of activating an immune effector cell (e.g., a T cell) and a co-stimulatory domain intended to enhance the efficacy and persistence of the immune effector cell (e.g., a T cell) (Sadelain et al, cancer discovery.3:388-398 (2013)). 3:388-398 (2013)). Thus, CAR design can combine antigen recognition and signal transduction, both functions being physiologically assumed by two independent complexes (TCR heterodimer and CD3 complex). The "second generation" CARs include intracellular domains from various co-stimulatory receptors, such as CD28, 4-1BB, ICOS, OX, etc., located at the cytoplasmic tail of the CAR to provide additional signals to the cell. The "second generation" CAR provides both costimulatory (e.g., through the CD28 or 4-1BB domain) and activation (e.g., through the CD3 zeta signaling domain) functions. Studies have shown that "second generation" CARs can increase the anti-tumor activity of T cells. In 2017, the FDA approved two anti-CD 19 CAR T cell products for the treatment of relapsed B cell precursor acute lymphoblastic leukemia (B-ALL) and B cell non-hodgkin lymphoma. The "third generation" CARs provide a variety of co-stimulatory (e.g., by comprising domains of both CD28 and 4-1 BB) and activating (e.g., by comprising a cd3δ activating domain) functions.
Thus, provided by the present invention is a CAR that specifically binds BCMA, comprising, from N-terminus to C-terminus: (a) a BCMA binding domain comprising an anti-BCMA antibody or antigen binding fragment provided by the invention, (b) a transmembrane domain, and (c) a cytoplasmic domain. The anti-BCMA antibody or antigen binding fragment may be any anti-BCMA antibody or antigen binding fragment described herein. For illustrative purposes, in some embodiments, the CARs provided by the invention include a CAR that can include an anti-BCMA antibody or antigen binding fragment that can have a VL and a VH, wherein the VL includes a VL CDR1, a CDR2, and a CDR3, and the VH includes a VH CDR1, a CDR2, and a CDR3, and wherein the VL CDR1, VL CDR2, VL CDR3, VH CDR1, VH CDR2, and VH CDR3 have the amino acid sequences set forth in SEQ ID NOs: 8, 18, 28, 39, 51, and 63, respectively.
In some embodiments, the CARs provided herein can include an anti-BCMA antibody or antigen binding fragment that is an scFv labeled BCMA 31.
The transmembrane domain of the CAR provided herein includes a hydrophobic alpha helix that spans at least a portion of the membrane. Different transmembrane domains lead to different receptor stabilities. Following antigen recognition, the receptor aggregates and transmits a signal to the cell. In one embodiment, the transmembrane domain of a CAR provided herein can be derived from a protein or polypeptide naturally expressed in immune effector cells. By a transmembrane domain derived from a protein or polypeptide is meant that the transmembrane domain includes the entire transmembrane region of the protein or polypeptide or a fragment thereof. In some embodiments, the invention provides a CAR having a transmembrane domain that can be from CD8, CD28, CD3 zeta, CD4, 4-1BB, OX40, ICOS, CTLA-4, PD-1, LAG-3, 2B4, BTLA, T Cell Receptor (TCR) alpha chain, TCR beta chain, TCR zeta chain, CD3 epsilon, CD45, CD5, CD8, CD9, CD16, CD22, CD33, CD37, CD64, CD80, CD86, CD134, CD154, or other polypeptide expressed in an immune effector cell. In some embodiments, the transmembrane domain of a CAR provided herein includes a transmembrane region that is the transmembrane region of CD8, CD28, CD3 ζ, CD4, 4-1BB, OX40, ICOS, CTLA-4, PD-1, LAG-3, 2B4, BTLA, T Cell Receptor (TCR) alpha chain, TCR beta chain, TCR zeta chain, CD3 epsilon, CD45, CD5, CD8, CD9, CD16, CD22, CD33, CD37, CD64, CD80, CD86, CD134, CD154, or other polypeptide expressed in an immune effector cell.
In some embodiments, the transmembrane domain of a CAR provided herein is derived from CD8. In some embodiments, the transmembrane domain comprises the transmembrane region of CD8. In some embodiments, the transmembrane domain is derived from CD28. In some embodiments, the transmembrane domain comprises the transmembrane region of CD28. In some embodiments, the transmembrane domain is derived from cd3ζ. In some embodiments, the transmembrane domain comprises a transmembrane region of cd3ζ. In some embodiments, the transmembrane domain is derived from CD4. In some embodiments, the transmembrane domain comprises the transmembrane region of CD4. In some embodiments, the transmembrane domain is derived from 4-1BB. In some embodiments, the transmembrane domain includes a transmembrane region of 4-1BB. In some embodiments, the transmembrane domain is derived from OX40. In some embodiments, the transmembrane domain comprises a transmembrane region of OX40. In some embodiments, the transmembrane domain is derived from ICOS. In some embodiments, the transmembrane domain comprises a transmembrane region of ICOS. In some embodiments, the transmembrane domain is derived from CTLA-4. In some embodiments, the transmembrane domain comprises a transmembrane region of CTLA-4. In some embodiments, the transmembrane domain is derived from PD-1. In some embodiments, the transmembrane domain comprises a transmembrane region of PD-1. In some embodiments, the transmembrane domain is derived from LAG-3. In some embodiments, the transmembrane domain comprises a transmembrane region of LAG-3. In some embodiments, the transmembrane domain is derived from 2B4. In some embodiments, the transmembrane domain comprises a transmembrane region of 2B4. In some embodiments, the transmembrane domain is derived from BTLA. In some embodiments, the transmembrane domain comprises a transmembrane region of BTLA. In some embodiments, the transmembrane domain is derived from a TCR a chain. In some embodiments, the transmembrane domain comprises a transmembrane region of a TCR a chain. In some embodiments, the transmembrane domain is derived from a TCR β chain. In some embodiments, the transmembrane domain comprises a transmembrane region of a TCR β chain. In some embodiments, the transmembrane domain is derived from a tcrζ chain. In some embodiments, the transmembrane domain comprises the transmembrane region of the TCR ζ chain. In some embodiments, the transmembrane domain is derived from CD3 epsilon. In some embodiments, the transmembrane domain comprises a transmembrane region of CD3 epsilon. In some embodiments, the transmembrane domain is derived from CD45. In some embodiments, the transmembrane domain comprises the transmembrane region of CD45. In some embodiments, the transmembrane domain is derived from CD5. In some embodiments, the transmembrane domain comprises the transmembrane region of CD5. In some embodiments, the transmembrane domain is derived from CD8. In some embodiments, the transmembrane domain comprises the transmembrane region of CD8. In some embodiments, the transmembrane domain is derived from CD9. In some embodiments, the transmembrane domain comprises the transmembrane region of CD9. In some embodiments, the transmembrane domain is derived from CD16. In some embodiments, the transmembrane domain comprises the transmembrane region of CD16. In some embodiments, the transmembrane domain is derived from CD22. In some embodiments, the transmembrane domain comprises the transmembrane region of CD22. In some embodiments, the transmembrane domain is derived from CD33. In some embodiments, the transmembrane domain comprises the transmembrane region of CD33. In some embodiments, the transmembrane domain is derived from CD37. In some embodiments, the transmembrane domain comprises the transmembrane region of CD37. In some embodiments, the transmembrane domain is derived from CD64. In some embodiments, the transmembrane domain comprises the transmembrane region of CD64. In some embodiments, the transmembrane domain is derived from CD80. In some embodiments, the transmembrane domain comprises a transmembrane region of CD80. In some embodiments, the transmembrane domain is derived from CD86. In some embodiments, the transmembrane domain comprises the transmembrane region of CD86. In some embodiments, the transmembrane domain is derived from CD134. In some embodiments, the transmembrane domain comprises the transmembrane region of CD134. In some embodiments, the transmembrane domain is derived from CD154. In some embodiments, the transmembrane domain comprises a transmembrane region of CD154. Exemplary transmembrane domains are described in more detail below.
In some embodiments, the transmembrane domain may be synthetic, in which case it comprises predominantly hydrophobic residues, such as leucine and valine. Optionally, the transmembrane domain may be derived from a polypeptide that is not naturally expressed in an immune effector cell, provided that the transmembrane domain is capable of transducing a signal from an antigen bound to the CAR to an intracellular signaling domain and/or a co-stimulatory domain. In some embodiments, the transmembrane domain may include a triplet of phenylalanine, tryptophan, and valine at each end. Optionally, a short oligonucleotide or polypeptide linker, preferably between 2 and 10 amino acids in length, can form a linkage between the transmembrane domain and cytoplasmic signaling domain of the CAR. Glycine-serine conjugates provide a very suitable linker.
As described above, the cytoplasmic domain of a CAR provided by the invention can contain a signaling domain that functions in an immune effector cell expressing the CAR. Such signaling domains may be derived, for example, from cd3ζ, fc receptor γ, fcγriia, fcrβ (fcεr1b), cd3γ, cd3δ, cd3ε, CD79a, CD79b, DAP10, or DAP12. The signaling domain may also be a combination of signaling domains derived from cd3ζ, fc receptor γ, fcγriia, fcrβ (fcεr1b), cd3γ, cd3δ, cd3ε, CD79a, CD79b, DAP10, or DAP12. A signaling domain derived from a protein or polypeptide refers to a domain of a protein or polypeptide responsible for activating immune effector cells (e.g., T cells), or a fragment thereof that retains its activating function. In general, the signaling domain induces persistence, transport and/or effector functions in transduced immune effector cells, such as T cells (Sharpe et al, dis. Model Mech.8:337-350 (2015); finney et al, J. Immunol.161:2791-2797 (1998); krause et al, J. Exp. Med.188:619-626 (1998)). The signaling domain of a protein or polypeptide may be an intracellular domain of the protein or polypeptide. In some embodiments, the signaling domain comprises an intracellular domain of cd3ζ, fcrγ, fcγriia, fcrβ, cd3γ, cd3δ, cd3ε, CD5, CD22, CD79a, CD79b, DAP10, DAP12, or any combination thereof.
In some embodiments, the cytoplasmic domain of the CARs provided herein comprises a signaling domain derived from cd3ζ. In some embodiments, the signaling domain comprises an intracellular domain of cd3ζ. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from fcrγ. In some embodiments, the signaling domain comprises an intracellular domain of fcrγ. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from fcyriia. In some embodiments, the signaling domain comprises an intracellular domain of fcyriia. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from fcrβ. In some embodiments, the signaling domain comprises an intracellular domain of fcrβ. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from cd3γ. In some embodiments, the signaling domain comprises an intracellular domain of cd3γ. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from cd3δ. In some embodiments, the signaling domain comprises an intracellular domain of cd3δ. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from CD3 epsilon. In some embodiments, the signaling domain comprises an intracellular domain of CD3 epsilon. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from CD 5. In some embodiments, the signaling domain comprises an intracellular domain of CD 5. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from CD 22. In some embodiments, the signaling domain comprises an intracellular domain of CD 22. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from CD79 a. In some embodiments, the signaling domain comprises an intracellular domain of CD79 a. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from CD79 b. In some embodiments, the signaling domain comprises an intracellular domain of CD79 b. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from DAP 10. In some embodiments, the signaling domain comprises an intracellular domain of DAP 10. In some embodiments, the cytoplasmic domain comprises a signaling domain derived from DAP 12. In some embodiments, the signaling domain comprises an intracellular domain of DAP 12. Exemplary signaling domains are described in more detail below.
In some embodiments, the cytoplasmic domain of the CARs provided herein further comprises a costimulatory domain. In some embodiments, the cytoplasmic domain of the CARs provided herein further comprises two co-stimulatory domains. Such co-stimulatory domains may provide for enhanced activation of immune effector cells (e.g., T cells). The costimulatory signaling domain can be derived, for example, from CD28, 4-1BB (CD 137), OX40, ICOS, DAP10, 2B4, CD27, CD30, CD40, CD2, CD7, LIGHT, TIGIT, GITR, TLR, DR3, or CD43. Costimulatory domains derived from proteins or polypeptides refer to domains of proteins or polypeptides that are responsible for providing enhanced activation of immune effector cells (e.g., T cells), or fragments that retain their activation function. In some embodiments, the CAR co-stimulatory domains provided herein include the intracellular domains of CD28, 4-1BB (CD 137), OX40, ICOS, DAP10, 2B4, CD27, CD30, CD40, CD2, CD7, LIGHT, TIGIT, GITR, TLR, DR3, or CD43. In some embodiments, the invention provides a CAR cytoplasmic domain comprising a co-stimulatory domain derived from CD 28. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 28. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from 4-1 BB. In some embodiments, the costimulatory domain comprises the intracellular domain of 4-1 BB. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from OX 40. In some embodiments, the co-stimulatory domain comprises an intracellular domain of OX 40. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from ICOS. In some embodiments, the co-stimulatory domain comprises an intracellular domain of ICOS. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from DAP 10. In some embodiments, the co-stimulatory domain comprises an intracellular domain of DAP 10. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from 2B 4. In some embodiments, the co-stimulatory domain comprises an intracellular domain of 2B 4. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD 27. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 27. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD 30. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 30. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD 40. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 40. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD 2. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 2. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD 7. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD 7. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from LIGHT. In some embodiments, the co-stimulatory domain comprises an intracellular domain of LIGHT. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from TIGIT. In some embodiments, the co-stimulatory domain comprises an intracellular domain of TIGIT. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from GITR. In some embodiments, the co-stimulatory domain comprises an intracellular domain of GITR. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from a TLR. In some embodiments, the co-stimulatory domain comprises an intracellular domain of a TLR. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from DR 3. In some embodiments, the co-stimulatory domain comprises an intracellular domain of DR 3. In some embodiments, the cytoplasmic domain comprises a co-stimulatory domain derived from CD43. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD43. Exemplary co-stimulatory domains are described in more detail below.
CARs comprising an intracellular domain comprising a costimulatory domain derived from 4-1BB, ICOS, or DAP-10 have been described (see U.S.7,446,190, which is incorporated herein by reference, which also describes representative sequences of 4-1BB, ICOS, and DAP-10). In some embodiments, the cytoplasmic domain of the CAR can include two co-stimulatory domains derived from two co-stimulatory receptors, e.g., CD28 and 4-1BB (see Sadelain et al, cancer discover.3 (4): 388-398 (2013)), or CD28 and OX40, or a combination of other co-stimulatory ligands disclosed herein.
The extracellular domain of the CAR may be fused to a leader peptide or signal peptide that directs the nascent protein into the endoplasmic reticulum and subsequently transported to the cell surface. It will be appreciated that once a polypeptide containing a signal peptide is expressed on the cell surface, the signal peptide has typically been proteolytically removed during processing and transport of the polypeptide to the cell surface in the endoplasmic reticulum. Thus, a polypeptide, such as a CAR, is typically expressed on the cell surface as a mature protein lacking the signal peptide, whereas a precursor form of the polypeptide includes the signal peptide. If the CAR is to be glycosylated and/or anchored to the cell membrane, a signal peptide or leader peptide may be necessary. The signal or leader sequence is a peptide sequence, typically present at the N-terminus of the newly synthesized protein, that directs the protein into the secretory pathway. The signal peptide is covalently linked to the N-terminus of the extracellular antigen-binding domain of the CAR, forming a fusion protein. Any suitable signal peptide, as is well known in the art, can be used in the CAR to provide cell surface expression in immune cells (see, gierasch, biochem.28:923-930 (1989); von Heijne, J. Mol. Biol.184 (1): 99-105 (1985)). Particularly useful signal peptides may be derived from any signal peptide provided herein that is naturally expressed in immune cells, including polypeptides disclosed herein. Thus, any suitable signal peptide may be utilized to direct expression of the CAR at the cell surface of an immune effector cell provided by the present invention.
In some embodiments, the CAR may further comprise a spacer or sequence that interconnects the domains of the CAR. For example, a spacer may be included between the signal peptide and the antigen binding domain, between the antigen binding domain and the transmembrane domain, between the transmembrane domain and the intracellular domain, and/or between domains within the intracellular domain, such as between the stimulation domain and the co-stimulation domain. The spacer may be flexible enough to allow interaction of the various domains with other polypeptides, e.g., to allow flexibility in the orientation of the antigen binding domain to facilitate antigen recognition. The spacer may be, for example, a hinge region from an IgG, CH of an immunoglobulin 2 CH 3 (constant) regions, and/or portions of CD3 (cluster 3) or some other sequence suitable as a spacer. In some embodiments, the presently disclosed CARs include a hinge domain that connects the BCMA binding domain and the transmembrane domain. In some embodiments, the hinge domain comprises a CD8 hinge structure. In some embodiments, the hinge domain comprises a CD28 hinge structure.
Some of the exemplary molecules provided below, the domains of the CARs provided herein can be derived therefrom.
CD3ζCd3ζ comprises 3 immunoreceptor tyrosine-based activation motifs (ITAMs) and upon antigen binding, transmits activation signals to cells, e.g. cells of the lymphoid lineage, such as T cells. The CD3 zeta polypeptide may have an amino acid sequence corresponding to the sequence of GenBank accession NP-932170 (NP-932170.1, GI:37595565; shown below) or a fragment thereof. In some embodiments, the CD3 zeta signaling domain has the sequence of amino acids 52 to 164 of the CD3 zeta polypeptide sequence provided below, or a fragment thereof sufficient for signaling activity. See GenBank np_932170 for reference to domains within cd3ζ, such as the signal peptide of amino acids 1-21; an extracellular domain of amino acids 22-30; the transmembrane region of amino acids 31-51; an intracellular domain of amino acids 52-164. In some embodiments, the CAR canHas a transmembrane domain derived from cd3ζ. The transmembrane domain may comprise the transmembrane region of cd3ζ (e.g. amino acids 31 to 51 of the sequence below) or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can comprise a signaling domain derived from cd3ζ. In some embodiments, the signaling domain of cd3ζ may comprise an intracellular domain of cd3ζ (e.g., amino acids 52 to 164 of the following sequence) or fragment thereof. It will be appreciated that CD3 zeta sequences shorter or longer than the particular description domain may be included in the CAR if desired.
Figure BDA0003670489370000371
Figure BDA0003670489370000381
FcRγ,The activated class of IgG receptor fcγr forms a multimeric complex comprising an fcreceptor γ chain (fcrγ) containing an Intracellular Tyrosine Activation Motif (ITAM) whose activation triggers reactive oxygen species burst, cytokine release, phagocytosis, antibody dependent cell mediated cytotoxicity and degranulation. The FcRgamma polypeptide may have an amino acid sequence having the NCBI reference sequence NP-004097.1 (GI: 4758344) or a fragment thereof. See GenBank np_004097 for reference to domains within fcrγ, e.g., signal peptides such as amino acids 1-18; an extracellular domain of amino acids 19-23; a transmembrane domain of amino acids 24-44; an intracellular domain of amino acids 45-86. In some embodiments, the CAR may include a transmembrane domain derived from fcrγ. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of fcrγ or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from fcrγ. In some embodiments, the signaling domain comprises an intracellular domain of fcrγ or a fragment thereof. It will be appreciated that FcR gamma sequences shorter or longer than the particular description domain may be included in the CAR if desired.
FcγRiiaIs a cell surface receptor found on phagocytes such as macrophages, neutrophils, etc., which is involved in the phagocytosis and clearance process of immune complexes. By binding to IgG, it initiates a cellular response to pathogens and soluble antigens. Fcγriia also promotes phagocytosis of regulatory antigens. The fcyriia polypeptide may have an amino acid sequence corresponding to the sequence of NCBI reference sequence np_001129691.1 or a fragment thereof. See NCBI reference sequence np_001129691.1 to reference a domain within fcyriia, e.g., a signal peptide of amino acids 1-33; an extracellular domain of amino acids 34-217; a transmembrane domain of amino acids 218-240; 241-317. In some embodiments, the CAR can include a transmembrane domain derived from fcyriia. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of fcyriia or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can comprise a signaling domain derived from fcyriia. In some embodiments, the signaling domain comprises an intracellular domain of fcyriia or a fragment thereof. It will be appreciated that fcγriia sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
FcRβ(FcεR1b)Is a high affinity receptor that binds to the Fc region of immunoglobulin epsilon. Complete mast cell responses require aggregation of fcrβ by multivalent antigens, including de novo production by degranulation releasing preformed mediators (such as histamine) as well as lipid mediators and cytokines. Fcrβ also mediates secretion of important lymphokines. Binding of allergen to receptor-bound IgE results in cell activation and mediator release responsible for allergic manifestations. The fcrβ polypeptide may have an amino acid sequence corresponding to the amino acid sequence of NCBI reference sequence np_000130.1 or a fragment thereof. See NCBI reference sequence: np_000130.1 references domains within fcrβ, such as the intracellular domains of amino acids 1-59, 118-130 and 201-244; transmembrane domains of amino acids 60-79, 98-117, 131-150 and 181-200; extracellular domains of amino acids 80-97 and 151-180. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from fcrβ. In some embodimentsThe signaling domain comprises an intracellular domain of fcrβ or a fragment thereof. It will be appreciated that fcrβ sequences shorter or longer than the particular description domain may be included in the CAR if desired.
CD3 gamma (T cell surface glycoprotein CD3 gamma chain)Is part of the TCR-CD3 complex present on the surface of T lymphocytes and plays an important role in the adaptive immune response. The cytoplasmic domain of CD3 gamma contains the Immunoreceptor Tyrosine Activation Motifs (ITAMs). In addition to signal transduction in T cell activation, cd3γ plays an important role in the dynamic regulation of cell surface TCR expression. The CD3 gamma polypeptide may have an amino acid sequence corresponding to the sequence having the NCBI reference sequence: NP-004097.1 (GI: 4758344) or a fragment thereof. See GenBank np_004097 for reference to domains within CD3 gamma, such as the signal peptide of amino acids 1-22; an extracellular domain of amino acids 23-116; 117-137 amino acids; 138-182 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from cd3γ. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of cd3γ or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from cd3γ. In some embodiments, the signaling domain comprises an intracellular domain of cd3γ or fragment thereof. It will be appreciated that, if desired, a CD3 gamma sequence shorter or longer than the particular description domain may be included in the CAR.
CD3 delta (T cell surface glycoprotein CD3 delta chain)Is part of the TCR-CD3 complex on the surface of T lymphocytes and plays an important role in the adaptive immune response. The cytoplasmic domain of CD3δ contains the Immunoreceptor Tyrosine Activation Motif (ITAMs). In addition to signaling in T cell activation, cd3δ plays an important role in thymic cell differentiation and is involved in the correct assembly and surface expression of intracellular TCR-CD3 complex. The interaction of cd3δ with CD4 and CD8, thus serves to establish a functional link between TCR and CD4 and CD8 co-receptors, which is necessary for CD4 or CD 8T cell activation and positive selection. The amino acid sequence of the CD3 delta polypeptide may correspond to the amino acid sequence of NP-000723.1, which has the NCBI reference sequenceA base acid sequence or a fragment thereof. See BCBI reference sequence: np_000723.1 refers to domains within cd3δ, such as the signal peptide of amino acids 1-21; an extracellular domain of amino acids 22-105; a transmembrane region of amino acids 106-126; 127-171, and a pharmaceutically acceptable carrier. In some embodiments, the CAR can include a transmembrane domain derived from cd3δ. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of cd3δ or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from cd3δ. In some embodiments, the signaling domain comprises an intracellular domain of cd3δ or fragment thereof. It will be appreciated that CD3 delta sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD3 epsilon (T cell surface glycoprotein CD3 epsilon chain)Is part of the TCR-CD3 complex present on the surface of T lymphocytes and plays an important role in the adaptive immune response. The cytoplasmic domain of CD3 epsilon contains the Immunoreceptor Tyrosine Activation Motif (ITAMs). In addition to signal transduction in T cell activation, CD3 epsilon plays an important role in the proper development of T cells. CD3 epsilon 0 triggers the assembly of the TCR-CD3 complex by the formation of two heterodimers, cd3δ/cd3γ and cd3γ/cd3γ. The CD3 epsilon polypeptide may have an amino acid sequence corresponding to the amino acid sequence of NCBI reference sequence np_000724.1 or a fragment thereof. See BCBI reference sequence: NP-000724.1 is a signal peptide referencing a domain within CD3 epsilon, such as amino acids 1-22; an extracellular domain of amino acids 23-126; 127-152 amino acid transmembrane region; 153-207. In some embodiments, the CAR can include a transmembrane domain derived from CD3 epsilon. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD3 epsilon or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from CD3 epsilon. In some embodiments, the signaling domain comprises an intracellular domain of CD3 epsilon or a fragment thereof. It will be appreciated that CD3 epsilon sequences shorter or longer than the particular description domain can be included in the CAR, if desired.
CD79a (B-cell antigen receptor)Complex related protein alpha chainIs required for the following process: in conjunction with CD79B, initiates a signaling cascade that is activated by binding of antigen to the B-cell antigen receptor complex (BCR), which results in internalization of the complex, transport to secondary endosomes, and antigen presentation. CD79a stimulates SYK autophosphorylation and activation. CD79a also binds to BLNK, approaching BLNK to SYK and phosphorylating SYK to BLNK, and interacts with some Src family tyrosine kinases, enhancing its activity. The CD79a polypeptide may have an amino acid sequence corresponding to the amino acid sequence of NCBI reference sequence np_001774.1 or a fragment thereof. See NCBI reference sequence: np_001774.1 refers to domains within CD79a, such as the signal peptide of amino acids 1-32; an extracellular domain of amino acids 33-143; a transmembrane region of amino acids 144-165; 166-226 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from CD79 a. In some embodiments, the CAR transmembrane domain comprises the transmembrane region of CD79a or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can comprise a signaling domain derived from CD79 a. In some embodiments, the signaling domain comprises an intracellular domain of CD79a or a fragment thereof. It will be appreciated that CD79a sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD79B (B-cell antigen receptor complex related protein beta chain)Is required for the following process: in conjunction with CD79a, a signaling cascade is initiated that is activated by binding of antigen to the B-cell antigen receptor complex (BCR), which results in internalization of the complex, translocation to the secondary endosome, and antigen presentation. CD79b promotes phosphorylation of CD79 a. The CD79b polypeptide may have an amino acid sequence corresponding to the amino acid sequence of NCBI reference sequence np_000617.1 or a fragment thereof. See NCBI reference sequence: np_000617.1 refers to domains within CD79b, such as the signal peptide of amino acids 1-28; 29-159; a transmembrane region of amino acids 160-180; 181-229. In some embodiments, the CAR may comprise a transmembrane domain derived from CD79 b. In some embodiments, the CAR spans a membraneThe domain comprises the transmembrane region of CD79b or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a signaling domain derived from CD79 b. In some embodiments, the signaling domain comprises an intracellular domain of CD79b or a fragment thereof. It will be appreciated that CD79b sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
DAP10DAP10, also known as hematopoietic cell signaling transducer, is a signaling subunit associated with the large family of receptors in hematopoietic cells. DAP10 polypeptide can have an amino acid sequence corresponding to the sequence of GenBank No. NP-055081.1 (GI: 15826850) or a fragment thereof. See GenBank np_055081 for reference to domains within DAP10, such as signal peptides of amino acids 1-18; an extracellular domain of amino acids 19-48; a transmembrane region of amino acids 49-69; an intracellular domain of amino acids 70-93. In some embodiments, the CAR cytoplasmic domain can comprise a signaling domain derived from DAP 10. In some embodiments, the signaling domain comprises an intracellular domain of DAP10 or a fragment thereof. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from DAP 10. In some embodiments, the co-stimulatory domain comprises an intracellular domain of DAP10 or a fragment thereof. It is to be understood that DAP10 sequences shorter or longer than the particular description domain can be included in the CAR, if desired.
DAP12,DAP12 is present in myeloid cells, such as macrophages and granulocytes, where it is associated with, for example, trigger receptors expressed on myeloid cell members (TREM) and MDL1 (myeloid DAP 12-related lectin 1/CLEC 5A), both of which are involved in the inflammatory response against pathogens, such as viruses and bacteria. In lymphoid cells, DAP12 is expressed in NK cells and is associated with the activating receptor (e.g.the C-type lectin receptor NKG2C), the natural cytotoxic receptor NKp44, short tail type KIR3DS1 and KIR2DS1/2/5, respectively. In particular, NGK2C is the primary activating NK cell receptor for controlling CMV infection in humans and mice. It was found that DAP12 containing CARs cross-linked with their Ag produced sufficient activation signals in NK cells.
Figure BDA0003670489370000411
J Immunol 194:3201-12 (2015). The DAP12 polypeptide can have an amino acid sequence corresponding to the sequence of GenBank No. AAD09437.1 (GI: 2905996), or a fragment thereof. See GenBank No. aad09437.1 for reference to domains within DAP12, such as the signal peptide of amino acids 1-21; an extracellular domain of amino acids 22-40; the transmembrane region of amino acids 41-61; an intracellular domain of amino acids 62-113. In some embodiments, the CAR cytoplasmic domain can comprise a signaling domain derived from DAP 12. In some embodiments, the signaling domain comprises an intracellular domain of DAP12 or a fragment thereof. In some embodiments, the cytoplasmic domain comprises a costimulatory domain derived from DAP 12. In some embodiments, the co-stimulatory domain comprises an intracellular domain of DAP12 or a fragment thereof. It is to be understood that DAP12 sequences shorter or longer than the particular description domain can be included in the CAR, if desired.
CD28,Cluster of differentiation 28 (CD 28) is a protein expressed on T cells that provides a costimulatory signal for T cell activation and survival. CD28 is a receptor for CD80 (B7.1) and CD86 (B7.2) proteins. The CD28 polypeptide may have an amino acid sequence corresponding to a sequence having GenBank No. P10747 (P10747.1, GI: 115973) or NP-006130 (NP-006130.1, GI: 5453611) or a fragment thereof, as described below. See GenBank np_006130 to reference domains within CD28, e.g., signal peptides of amino acids 1 to 18; 19-152 amino acids; 153-179 amino acid transmembrane domain; an intracellular domain of amino acids 180-220. In some embodiments, the CAR can include a hinge domain derived from CD28 (e.g., amino acids 114 to 152 of the following sequence) or a fragment thereof. In some embodiments, the CAR can include a transmembrane domain derived from CD 28. In some embodiments, the CAR transmembrane domain comprises the transmembrane region of CD28 (e.g., amino acids 153 to 179 of the following sequence), or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from CD 28. In some embodiments The co-stimulatory domain includes the intracellular domain of CD28 (e.g., amino acids 180 to 220 of the following sequence) or a fragment thereof. In some embodiments, the CAR may include two domains derived from CD28, a costimulatory signaling domain, and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes the transmembrane domain and intracellular domain of CD28, and the CAR includes amino acids 153 to 220 of CD 28. In some embodiments, the CAR can include three domains derived from CD28, a transmembrane domain, a hinge domain, and a costimulatory signaling domain. In another embodiment, the CAR comprises amino acids 114 to 220 of CD 28. It will be appreciated that CD28 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
Figure BDA0003670489370000421
4-1BB,4-1BB is also known as a member 9 of the tumor necrosis factor receptor superfamily, and can be used as a ligand of Tumor Necrosis Factor (TNF) and has stimulatory activity. The 4-1BB polypeptide may have an amino acid sequence corresponding to a sequence having GenBank No. P41273 (P41273.1, GI: 728739) or NP-001552 (NP-001552.2, GI: 5730095), or a fragment thereof. See GenBank np_001552 for reference to domains within 4-1BB, e.g., signal peptides of amino acids 1-17; an extracellular domain of amino acids 18-186; a transmembrane domain of amino acids 187-213; 214-255 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from 4-1 BB. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of 4-1BB (e.g., amino acids 187 to 213 of the following sequence), or fragment thereof. In some embodiments, the CAR cytoplasmic domain can comprise a costimulatory domain derived from 4-1 BB. In some embodiments, the costimulatory domain comprises the intracellular domain of 4-1BB (e.g., amino acids 214 to 255 of the following sequence), or a fragment thereof. In some embodiments, the CAR may include two domains derived from 4-1BB, a costimulatory signaling domain, and a transmembrane domain. In some implementations In embodiments, the CAR has an amino acid sequence comprising a transmembrane domain and an intracellular domain of 4-1BB, and the CAR comprises amino acids 187 to 255 of 4-1 BB. It will be appreciated that 4-1BB sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
Figure BDA0003670489370000422
OX40,OX40, also known as a tumor necrosis factor receptor superfamily member 4 precursor or CD134, is a member of the TNFR-receptor superfamily. OX40 polypeptides may have an amino acid sequence corresponding to a sequence having GenBank No. P43489 (P43489.1, GI: 1171933) or np_003318 (np_003318.1, GI: 4507579) or a fragment thereof. See GenBank np_003318 for reference to domains in OX40, e.g., signal peptides of amino acids 1-28; an extracellular domain of amino acids 29-214; a transmembrane domain of amino acids 215-235; 236-277 amino acids. It is understood that OX40 sequences shorter or longer than the particular description domain may be included in the CAR, if desired. In some embodiments, the CAR can include a transmembrane domain derived from OX 40. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of OX40 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from OX 40. In some embodiments, the co-stimulatory domain comprises an intracellular domain of OX40 or a fragment thereof. In some embodiments, the CAR may include two domains derived from OX40, a costimulatory signaling domain, and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of OX40, and the CAR includes amino acids 215 to 277 of OX 40. It is understood that OX40 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
ICOS,An inducible T cell costimulatory precursor (ICOS), also known as CD278, is a CD28 superfamily costimulatory receptor expressed on activated T cells. ICOS polypeptides may have an amino acid sequence that is a pair of amino acid sequencesCorresponds to a sequence having GenBank No. NP-036224 (NP-036224.1, GI: 15029518) or a fragment thereof. See GenBank np_036224 for reference to domains within ICOS, such as signal peptides of amino acids 1-20; an extracellular domain of amino acids 21-140; 141-161 amino acids; 162-199 amino acids. In some embodiments, the CAR may include a transmembrane domain derived from ICOS. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of ICOS or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a costimulatory domain derived from ICOS. In some embodiments, the co-stimulatory domain comprises an intracellular domain of ICOS or a fragment thereof. In some embodiments, the CAR may include two domains derived from ICOS, a costimulatory signaling domain and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of ICOS, and the CAR includes amino acids 141 to 199 of ICOS. It will be appreciated that ICOS sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
2B42B4 (CD 244) is a co-stimulatory receptor expressed on both NK cells and CD8+ T cells. The target is hematopoietic cells (including B cells and T cells) and activates non-MHC-like molecules (CD 48) expressed on monocytes and granulocytes. 2B4 is activated by binding of its ligand to the target cell, resulting in NK (or T cell) activation and killing of the target cell. The 2B4 polypeptide may have an amino acid sequence corresponding to a sequence having accession number Q9BZW8.2 (NP-001160135.1; GI: 47605541) or a fragment thereof. See GenBank np_001160135.1 for reference to domains within 2B4, e.g., signal peptides of amino acids 1-21; an extracellular domain of amino acids 22-229; a transmembrane domain of amino acids 230-250; the intracellular domain of amino acids 251-370. In some embodiments, the CAR can include a transmembrane domain derived from 2B 4. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of 2B4 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a costimulatory domain derived from 2B 4. In some embodiments, the costimulatory domain comprises 2B4An intracellular domain or fragment thereof. In some embodiments, the CAR may include two domains derived from 2B4, a costimulatory signaling domain and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence comprising a transmembrane domain and an intracellular domain of 2B4, and the CAR comprises amino acids 230 to 370 of 2B 4. It will be appreciated that 2B4 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD27: CD27 (TNFRSF 7) is a transmembrane receptor expressed in human cd8+, cd4+ T cell subsets, NKT cells, NK cell subsets and hematopoietic progenitor cells, and induced expression in foxp3+ CD4T cells and B cell subsets. Previous studies have found that CD27 can actively provide co-stimulatory signals in vivo, increasing human T cell survival and antitumor activity. (see Song and Powell; oncominium 1, no.4 (2012): 547-549). The CD27 polypeptide may have an amino acid sequence corresponding to a sequence having the sequence UniProtKB/Swiss-Prot No. P26842.2 (GenBank NP-001233.1; GI: 269849646) or a fragment thereof. See GenBank np_001233 for reference to domains within CD27, e.g., signal peptides of amino acids 1-19; an extracellular domain of amino acids 20-191; 192-212 amino acids; 213-260 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from CD 27. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD27 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from CD 27. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD27 or a fragment thereof. In some embodiments, the CAR may include two domains derived from CD27, a costimulatory signaling domain, and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of CD27, and the CAR includes amino acids 192 to 260 of CD 27. It will be appreciated that CD27 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD30: CD30 and its ligand (CD 30L) belong to Tumor Necrosis Factor Receptor (TNFR)) And members of the Tumor Necrosis Factor (TNF) superfamily. CD30 behaves in many ways like Ox40 and enhances proliferation and cytokine production induced by TCR stimulation (Goronzy and Weyand, arthritis, research)&treatment 10, no. S1 (2008): S3). The CD30 polypeptide may have an amino acid sequence corresponding to the sequence of GenBank No. AAA51947.1 (GenBank NP-001234.3; GI: 180096) or a fragment thereof. See GenBank np_001234.3 for reference to domains within CD30, e.g., signal peptides of amino acids 1-18; 19-385 amino acid; a transmembrane domain of amino acids 386-406; 407-595. In some embodiments, the CAR can include a transmembrane domain derived from CD 30. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD30 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from CD 30. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD30 or a fragment thereof. In some embodiments, the CAR may include two domains derived from CD30, a costimulatory signaling domain, and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes the transmembrane domain and intracellular domain of CD30, and the CAR includes amino acids 386 to 595 of CD 30. It will be appreciated that CD30 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD40: CD40 is a 48kD transmembrane glycoprotein surface receptor, one of the members of the Tumor Necrosis Factor Receptor Superfamily (TNFRSF). For exemplary amino acid sequences of human CD40 see, e.g., accession numbers: ALQ33424.1, genBank np_001241.1, gi:957949089.CD40 was originally thought to be a co-stimulatory receptor expressed on APC and plays a central role in B-cell and T-cell activation. CD40 ligand CD154 (also known as TRAP, T-BAM, CD40 ligand or CD 40L) is a type II integral membrane protein. See GenBank np_001241.1 for reference to domains within CD40, e.g., signal peptides of amino acids 1-20; an extracellular domain of amino acids 21-193; a transmembrane domain of amino acids 194-215; an intracellular domain of amino acids 216-277. In some embodiments, the CAR can include a sourceThe transmembrane domain in CD 40. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD40 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can comprise a co-stimulatory domain derived from CD 40. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD40 or a fragment thereof. In some embodiments, the CAR may include two domains derived from CD40, a costimulatory signaling domain, and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes the transmembrane domain and intracellular domain of CD40, and the CAR includes amino acids 194 to 277 of CD 40. It will be appreciated that CD40 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD2Binding of the CD2 molecule to its ligand CD58 co-stimulates proliferation, cytokine production and effector function of the T cells, especially of a CD 28-deficient T cell subset. CD58 is widely expressed on APCs including dendritic cells. Binding of CD2 to CD28 - CD8 + TCR signals were amplified in T cells, indicating that CD2-CD58 interactions have a true costimulatory effect. CD2 signal promotes CD28 - CD8 + Control of viral infection by T cells, but also promotes CD28 - CD8 + Sustained expansion of T cells under sustained Ag chronic stimulation (Judith Leitner Jet al, immunol,2015, 195 (2) 477-487). The CD2 polypeptide may have an amino acid sequence corresponding to seq id no: np_001758.2gi:156071472 sequence or fragment thereof. See GenBank np_001758.2 for reference to domains within CD2, e.g., signal peptides of amino acids 1-24; an extracellular domain of amino acids 25-209; a transmembrane domain of amino acids 210-235; 236-351 amino acid. In some embodiments, the CAR can include a transmembrane domain derived from CD 2. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD2 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from CD 2. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD2 or a fragment thereof. In some embodiments, the CAR may comprise a polypeptide derived from C Two domains of D2, a co-stimulatory conduction domain and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of CD2, and the CAR includes amino acids 210 to 351 of CD 2. It will be appreciated that CD2 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
LIGHTTNF superfamily member 14 (also known as LTg, CD258, HVEML, and LIGHT) is a co-stimulatory receptor involved in cellular immune responses. LIGHT can act as a co-stimulatory factor to activate lymphoid cells and as a block of herpes virus infection. LIGHT has been demonstrated to stimulate proliferation of T cells, triggering apoptosis of a variety of tumor cells. LIGHT is present in T cells and stromal cells. LIGHT is expressed on immature Dendritic Cells (DCs) produced by human PBMCs. LIGHT is involved in co-stimulating human T cell proliferation, amplifying NF- κb signaling pathways, and preferentially inducing IFN- γ (rather than IL-4) production in the presence of antigen signaling. (Tamada Ket al., J Immunol,2000,164 (8) 4105-4110). The LIGHT polypeptide may have a sequence corresponding to accession number: np_001363816.1GI:1777376047 or a fragment thereof. See GenBank np_001363816.1 for reference to domains within LIGHT, such as the intracellular domains of amino acids 1-37; a transmembrane domain of amino acids 38-58; an extracellular domain of amino acids 59-240. In some embodiments, the CAR cytoplasmic domain can include a costimulatory domain derived from LIGHT. In some embodiments, the co-stimulatory domain comprises an intracellular domain of LIGHT or a fragment thereof. It is understood that LIGHT sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
GITR,TNF receptor superfamily member 18 (also known as TNFRSF18, AITR, GITR; CD357; GITR-D; ENERGEN) is expressed in increased expression upon T cell activation. Stimulation of T cells by GITR can enhance immunity to tumor and viral pathogens and exacerbate autoimmune diseases. The effect of stimulation by GITR is generally thought to be due to reduced effector activity of immunosuppressive cd4+cd25+ regulatory T (TReg) cells. (Shevach, E. And Stephens, G.Nat Rev Immunol 6,613-618 (2006)). The LIGHT polypeptide hasThere is a code associated with the accession number: AAI52382.1, genBank np_004186.1, gi:158931986 or a fragment thereof. See GenBank np_004186.1 for reference to domains within GITR, e.g., signal peptides of amino acids 1-25; an extracellular domain of amino acids 26-162; 163-183 th amino acid transmembrane domain; an intracellular domain of amino acids 184-241. In some embodiments, the CAR can include a transmembrane domain derived from GITR. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of GITR or a fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a costimulatory domain derived from GITR. In some embodiments, the co-stimulatory domain comprises an intracellular domain of GITR or a fragment thereof. In some embodiments, the CAR can include two domains derived from GITR, a costimulatory signaling domain and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of GITR, and the CAR includes amino acids 163 to 241 of GITR. It is understood that GITR sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
DR3TNF receptor superfamily member 25 (also known as DR3, TR3, DDR3, LARD, APO-3, TRAMP, WSL-1, GEF720, WSL-LR, PLEKHG5, or TNFRSF 12) is preferentially expressed in lymphocyte-enriched tissues and plays a role in regulating lymphocyte homeostasis. This receptor stimulates NF- κB activation and regulates apoptosis. The signal transduction of this receptor is mediated by various death domains containing adaptor proteins. This gene has been reported to encode multiple alternative splice transcriptional variants of different subtypes, most of which are potential secretory molecules. Selective cleavage of this gene in B cells and T cells, which predominantly produces full-length membrane-bound subtypes and is involved in controlling T cell activation-induced lymphocyte proliferation, encounters procedural changes upon T cell activation. DR3 polypeptides can have accession numbers: AAI17190.1, genBank np_003781.1gi:109658976, or a fragment thereof. See GenBank np_003781.1 for reference to domains within DR3, e.g., signal peptides of amino acids 1-24; an extracellular domain of amino acids 25-199; 200-220 bitsA transmembrane domain of an amino acid; 221-417 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from DR 3. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of DR3 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from DR 3. In some embodiments, the co-stimulatory domain comprises an intracellular domain of DR3 or a fragment thereof. In some embodiments, the CAR may include two domains derived from DR3, a costimulatory signaling domain and a transmembrane domain. In one embodiment, the CAR has an amino acid sequence comprising a transmembrane domain and an intracellular domain of DR3, and the CAR comprises amino acids 200 to 417 of DR 3. It will be appreciated that DR3 sequences shorter or longer than the particular description domain can be included in the CAR, if desired.
CD43,CD43 (also known as SPN-carried sialic acid protein, LSN, GALGP, GPL) is a highly sialylated glycoprotein with the function of antigen-specifically activating T cells, present on the surface of thymocytes, T lymphocytes, monocytes, granulocytes and certain B lymphocytes. Comprising a mucin-like extracellular domain, a transmembrane region and a carboxy-terminal intracellular region. In stimulated immune effector cells, proteolytic cleavage of the extracellular domain of certain cell types occurs, releasing soluble extracellular fragments. CD43 polypeptide may have the same accession number as GenBank np_ 003114.1: EAW80016.1 GI:119600422 or a fragment thereof. See GenBank np_003114.1 for reference to domains within CD43, such as the signal peptide of amino acids 1-19; an extracellular domain of amino acids 20-253; 254-276 amino acid transmembrane domain; 277-400 amino acids. In some embodiments, the CAR can include a transmembrane domain derived from CD 43. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD43 or fragment thereof. In some embodiments, the CAR cytoplasmic domain can include a co-stimulatory domain derived from CD 43. In some embodiments, the co-stimulatory domain comprises an intracellular domain of CD43 or a fragment thereof. In some embodiments, the CAR may comprise a source derived from Two domains of CD43, a costimulatory signaling domain and a transmembrane domain. In some embodiments, the CAR has an amino acid sequence that includes a transmembrane domain and an intracellular domain of CD43, and the CAR includes amino acids 254 to 400 of CD 43. It will be appreciated that CD43 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD4,Cluster of differentiation 4 (CD 4), also known as the T cell surface glycoprotein CD4, is a glycoprotein that is present on the surface of immune cells such as helper T cells, monocytes, macrophages and dendritic cells. In some embodiments, the CAR can include a transmembrane domain derived from CD 4. CD4 exists in a variety of isomers. It will be appreciated that any isomer may be selected to achieve the desired function. Exemplary isomers include isomer 1 (NP-000607.1, GI: 10835167), isomer 2 (NP-001181943.1, GI: 303522479), isomer 3 (NP-001181944.1, GI:303522485; or NP-001181945.1, GI:303522491; or NP-001181946.1, GI: 303522569), and the like. See GenBank np_000607.1 for reference to domains within CD4, e.g., signal peptides such as amino acids 1-25; an extracellular domain of amino acids 26-396; a transmembrane domain of amino acids 397-418; 419-458 amino acid. In some embodiments, the CAR can include a transmembrane domain derived from CD 4. In some embodiments, the CAR transmembrane domain comprises a transmembrane region of CD4 or fragment thereof. It will be appreciated that additional sequences of CD4 outside the transmembrane domain of amino acids 397 to 418 may be included in the CAR if desired. It is further understood that CD4 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
CD8,Cluster 8 (CD 8) is a transmembrane glycoprotein that acts as a co-receptor for the T Cell Receptor (TCR). CD8 binds to Major Histocompatibility Complex (MHC) molecules and is specific for MHC class I proteins. In some embodiments, the CAR can include a transmembrane domain derived from CD 8. The CD8 polypeptide may have an amino acid sequence corresponding to the sequence provided below with GenBank No. NP-001139345.1 (GI: 225007536) or a fragment thereof. See GenBank NP-001139345.1 for reference in CD8Domains, such as signal peptides like amino acids 1-21; an extracellular domain of amino acids 22-182; 183-203 amino acid transmembrane domain; an intracellular domain of amino acids 204-235. In some embodiments, the CAR can include a hinge domain derived from CD 8. In some embodiments, the hinge domain may include amino acids 137-182 of a CD8 polypeptide provided below. In some embodiments, the CAR can include a transmembrane domain derived from CD 8. In some embodiments, the CAR transmembrane domain comprises the transmembrane region of CD8 (e.g., amino acids 183 to 203 of the following sequence) or a fragment thereof. In another embodiment, the CAR may comprise amino acids 137-203 of the CD8 polypeptide provided below. In yet another embodiment, the CAR may comprise amino acids 137-209 of the CD8 polypeptide provided below. It will be appreciated that additional CD8 sequences, in addition to the hinge domain of amino acids 137 to 182 and the transmembrane domain of amino acids 183 to 203, can be included in the CAR, if desired. It is further understood that CD8 sequences shorter or longer than the particular description domain may be included in the CAR, if desired.
Figure BDA0003670489370000481
Thus, for exemplary purposes, a CAR of the present disclosure can include, from N-terminus to C-terminus, an anti-BCMA antibody or antigen binding fragment (e.g., an scFv of the present disclosure), a hinge (e.g., a CD8 hinge or a CD28 hinge), a transmembrane region (e.g., a CD8 transmembrane region or a CD28 transmembrane region), a costimulatory domain (e.g., the intracellular region of 4-1BB, CD28, or both), and a signaling domain (e.g., the T cell signaling domain of cd3ζ).
5.4 Polynucleotide and vector
The invention also provides polynucleotides encoding polypeptides described herein (e.g., anti-BCMA antibodies or antigen binding fragments or CARs that specifically bind BCMA). The term "polynucleotide encoding a polypeptide" encompasses: a polynucleotide comprising only the coding sequence of said polypeptide; and polynucleotides comprising additional coding and/or non-coding sequences. The polynucleotides of the invention may be in the form of RNA or in the form of DNA. The DNA may be cDNA, genomic DNA, or synthetic DNA, and may be double-stranded or single-stranded. The single-stranded DNA may be the coding strand or the non-coding (antisense) strand. The polynucleotides disclosed in the present invention may be mRNA.
The present invention expressly contemplates polynucleotides encoding any of the anti-BCMA antibodies or antigen binding fragments disclosed herein. For illustrative purposes, in some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment comprising (a) VL comprising (1) VL CDR1 having the amino acid sequence shown by SEQ ID No. 8; (2) VL CDR2 having the amino acid sequence shown by SEQ ID NO. 18; and (3) VL CDR3 having the amino acid sequence set forth in SEQ ID NO. 28; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VL CDRs; and/or, (b) a VH comprising (1) a VH CDR1 having the amino acid sequence shown by SEQ ID No. 39; (2) A VH CDR2 having the amino acid sequence shown by SEQ ID NO. 51; and (3) a VH CDR3 having the amino acid sequence shown by SEQ ID NO. 63; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the VH CDRs. In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment comprising (a) VL having at least 85%, at least 90%, at least 95%, at least 98%, or 100% sequence identity to the amino acid sequence shown by SEQ ID No. 75; and/or, (b) a VH having at least 85%, at least 90%, at least 95%, at least 98% or 100% sequence identity to the amino acid sequence set forth in SEQ ID No. 87. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising VL and VH, wherein the VL comprises VL CDR1, CDR2, and CDR3, the VH comprises VH CDR1, CDR2, and CDR3, and wherein the VL CDR1, VL CDR2, VL CDR3, VH CDR1, VH CDR2, and VH CDR3 have the amino acid sequences set forth in SEQ ID NOs 8, 18, 28, 39, 51, and 63, respectively; or a variant thereof having up to about 5 amino acid substitutions, additions and/or deletions in the CDRs. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising VL and VH, wherein the VL and VH have the amino acid sequences set forth in SEQ ID NOs 75 and 87, respectively. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
In some embodiments, the VL and VH are linked by a linker. The connector may be a flexible connector or a rigid connector. In some embodiments, the linker has an amino acid sequence of (GGGGS) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 155). In some embodiments, the linker has an amino acid sequence of (EAAAK) n, n=1, 2, 3, 4, or 5 (SEQ ID NO: 156). In some embodiments, the linker has an amino acid sequence of (PA) nP, n=1, 2, 3, 4, or 5 (SEQ ID NO: 157). In some embodiments, the linker has the amino acid sequence of GGGGSGGGGSGGGGS (SEQ ID NO: 158).
In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising a VL having at least 85%, at least 90%, at least 95%, at least 98%, or 100% sequence identity to the amino acid sequence shown by SEQ ID No. 75. In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising a VL having an amino acid sequence shown by SEQ ID No. 75.
In some embodiments, polynucleotides provided herein have a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical to the sequence set forth in SEQ ID NO 99. The present invention also provides a polynucleotide which hybridizes to a polynucleotide having the nucleotide sequence set forth in SEQ ID NO. 99. In some embodiments, hybridization is performed under high stringency conditions known to those of skill in the art. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising a VH having at least 85%, at least 90%, at least 95%, at least 98%, or 100% sequence identity to the amino acid sequence shown by SEQ ID No. 87. In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment disclosed herein comprising a VH having the amino acid sequence shown by SEQ ID No. 87.
In some embodiments, polynucleotides provided herein have a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical to the sequence set forth in SEQ ID NO. 111. The present invention also provides a polynucleotide which hybridizes to a polynucleotide having a nucleotide sequence represented by SEQ ID NO. 111. In some embodiments, the hybridization is performed under highly stringent conditions known to those skilled in the art. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
The invention also provides variants of the polynucleotides of the invention, wherein the variants encode, for example, fragments, analogs and/or derivatives of the anti-BCMA antibodies or antigen binding fragments of the invention. In some embodiments, the invention provides a polynucleotide having at least about 80% identity, at least about 85% identity, at least about 90% identity, at least about 95% identity, at least about 96% identity, at least about 97% identity, at least about 98% identity, or at least about 99% identity to a polynucleotide sequence encoding an anti-BCMA antibody or antigen binding fragment of the invention.
In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment that is an scFv labeled BCMA 31. In some embodiments, the polynucleotides provided herein encode an anti-BCMA antibody or antigen binding fragment having the amino acid sequence shown by SEQ ID No. 123.
The invention also provides polynucleotides encoding the disclosed TCRs. In some embodiments, the invention provides polynucleotides encoding TCR a chains comprising an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides polynucleotides encoding TCR β chains comprising an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides polynucleotides encoding TCR gamma chains comprising an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides polynucleotides encoding TCR delta chains comprising an anti-BCMA antibody or antigen binding fragment of the invention. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
The invention also provides polynucleotides encoding the disclosed CARs of the invention. In some embodiments, the invention provides a polynucleotide encoding a CAR that specifically binds BCMA, the CAR comprising, from N-terminus to C-terminus: (a) a BCMA binding domain comprising an anti-BCMA antibody or antigen binding fragment provided by the invention, (b) a transmembrane domain, and (c) a cytoplasmic domain. The transmembrane and cytoplasmic domains can be any transmembrane and cytoplasmic domain disclosed herein. For illustrative purposes, provided herein is, for example, a polynucleotide encoding a CAR that specifically binds BCMA, the CAR comprising, from N-terminus to C-terminus: (a) a BCMA binding domain comprising an scFv against BCMA provided by the invention, (b) a transmembrane domain comprising a CD28 transmembrane region, and (c) a cytoplasmic domain comprising a CD3 zeta signaling domain and a 4-1BB costimulatory domain. The polynucleotide may be in the form of DNA. The polynucleotide may be in the form of an mRNA.
In some embodiments, the polynucleotides provided herein encode an anti-BCMA CAR having at least 85%, at least 90%, at least 95%, at least 98%, or 100% sequence identity to the amino acid sequence shown by SEQ ID No. 138. In some embodiments, the polynucleotides provided herein encode an anti-BCMA CAR having an amino acid sequence in the group consisting of SEQ ID No. 138.
In some embodiments, polynucleotides provided herein have a nucleotide sequence that is at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99%, or 100% identical to the sequence set forth in SEQ ID NO. 150. The present invention also provides a polynucleotide that hybridizes to a polynucleotide having the nucleotide sequence set forth by SEQ ID NO. 150. In some embodiments, the hybridization is performed under highly stringent conditions known to those skilled in the art.
As used herein, the phrase "a polynucleotide having a nucleotide sequence at least about 95% identical to a polynucleotide sequence" refers to a polynucleotide whose nucleotide sequence is identical to a reference sequence except that a maximum of 5 point mutations can be included in every 100 nucleotides of the reference sequence. In other words, to obtain a polynucleotide having a sequence at least 95% identical to a reference nucleotide sequence, up to 5% of the nucleotides in the reference sequence may be deleted or replaced with other nucleotides, or up to 5% of the nucleotides in the reference sequence may be inserted into the reference sequence. These mutations of the reference sequence may occur at the 5 'or 3' end positions of the reference nucleotide sequence or anywhere in between these end positions, interspersed individually between nucleotides in the reference sequence or in one or more consecutive groups in the reference sequence.
The polynucleotide variants may comprise alterations at the coding region, the non-coding region, or both. In some embodiments, the polynucleotide variant comprises an alteration that produces a silent substitution, addition, or deletion, but does not alter the nature or activity of the encoded polypeptide. In some embodiments, the polynucleotide variant comprises silent substitutions (due to degeneracy of the genetic code) that result in no change in the amino acid sequence of the polypeptide. The generation of polynucleotide variants may be for a variety of reasons, such as optimizing the codon expression of a particular host (e.g., to change codons in human mRNA to codons preferred by bacteria such as E.coli). In some embodiments, the polynucleotide variant comprises at least one silent mutation in a non-coding region or coding region of the sequence.
In some embodiments, polynucleotide variants are prepared to modulate or alter expression (or expression levels) of the encoded polypeptide. In some embodiments, polynucleotide variants are prepared to increase expression of the encoded polypeptide. In some embodiments, polynucleotide variants are prepared to reduce expression of the encoded polypeptide. In some embodiments, the polynucleotide variant increases expression of the encoded polypeptide as compared to the parent polynucleotide sequence. In some embodiments, the polynucleotide variant reduces expression of the encoded polypeptide as compared to the parent polynucleotide sequence.
In some embodiments, the polynucleotide comprises a coding sequence for a polypeptide (e.g., CAR or antibody) fused in the same reading frame to a polynucleotide that facilitates expression and secretion of the polypeptide from the host cell (e.g., as a leader sequence for a secretion sequence that controls transport of the polypeptide). The polypeptide may have a leader sequence that is cleaved by the host cell to form the "mature" polypeptide form.
In some embodiments, the polynucleotide comprises a coding sequence for a polypeptide (e.g., CAR or antibody) fused in the same reading frame to a tag or label sequence. For example, in some embodiments, the tag sequence is a hexa-histidine tag (HIS-tag), which allows efficient purification of the polypeptide fused to the tag. In some embodiments, when a mammalian host (e.g., COS-7 cells) is used, the tag sequence is a Hemagglutinin (HA) tag derived from influenza hemagglutinin protein. In some embodiments, the tag sequence is a flag tag. In some embodiments, the label may be used in combination with other labels or tags.
In some embodiments, the polynucleotide is isolated. In some embodiments, the polynucleotide is substantially purified.
The invention also provides vectors and cells comprising the polynucleotides of the invention. In some embodiments, vectors comprising the polynucleotides provided herein are provided. The vector may be an expression vector. In some embodiments, the invention provides vectors comprising polynucleotides encoding the anti-BCMA antibodies or antigen binding fragments of the invention. In some embodiments, the invention provides vectors comprising polynucleotides encoding a polypeptide that is part of an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides a vector comprising a polynucleotide encoding a CAR or TCR of the invention. In some embodiments, the invention provides a vector comprising a polynucleotide encoding a polypeptide that is part of a CAR or TCR of the invention.
In some embodiments, the invention provides recombinant expression vectors useful for amplifying and expressing polynucleotides encoding the CARs/TCRs of the invention or the anti-BCMA antibodies or antigen binding fragments that specifically bind BCMA. For example, the recombinant expression vector may be a replicable DNA construct comprising a synthetic or cDNA-derived DNA fragment encoding the polypeptide chain of a CAR/TCR or anti-BCMA antibody operably linked to appropriate transcriptional and/or translational regulatory elements derived from mammalian, microbial, viral or insect genes. In some embodiments, viral vectors are used. DNA regions are "operably linked" when they are functionally related to each other. For example, if the promoter controls transcription of a sequence, it is operably linked to a coding sequence; or operably linked to a coding sequence if the ribosome binding site is positioned so as to permit translation. In some embodiments, structural elements intended for use in certain expression systems include a leader sequence that may enable the host cell to extracellularly secrete the translated protein. In some embodiments, the polypeptide may include an N-terminal methionine residue in the absence of leader or transport sequences for expression of the recombinant protein.
A variety of expression host/vector combinations may be used. Expression vectors useful for eukaryotic hosts include, for example, vectors comprising expression control sequences from SV40, bovine papilloma virus, adenovirus and cytomegalovirus. Expression vectors useful for bacterial hosts include known bacterial plasmids, such as those from E.coli, including pCR1, pBR322, pMB9 and derivatives thereof, as well as plasmids of a broader host range, such as M13 and other filamentous single-stranded DNA phages.
In some embodiments, the CAR/TCR of the invention or the anti-BCMA antibody or antigen binding fragment is expressed in one or more vectors. Host cells suitable for expression include prokaryotes, yeast cells, insect cells, or higher eukaryotic cells under the control of appropriate promoters. Suitable cloning and expression vectors for bacterial, fungal, yeast and mammalian cell hosts, as well as protein production methods, including antibody production methods, are well known in the art.
Examples of suitable mammalian host cell lines include, but are not limited to, COS-7 (derived from monkey kidney), L-929 (derived from murine fibroblasts), C127 (derived from murine mammary tumors), 3T3 (derived from murine fibroblasts), CHO (derived from Chinese hamster ovary), heLa (derived from human cervical cancer), BHK (derived from hamster kidney fibroblasts), HEK-293 (derived from human embryonic kidney) cell lines, and variants thereof. Mammalian expression vectors may include non-transcriptional elements (e.g., origins of replication), suitable promoters and enhancers linked to the gene to be expressed, and other 5 'or 3' flanking non-transcribed and 5 'or 3' untranslated sequences (e.g., the necessary ribosome binding sites, polyadenylation sites, splice donor and acceptor sites, and transcription termination sequences). Expression of recombinant proteins in insect cell culture systems (e.g., baculoviruses) also provides a powerful method for producing correctly folded and biologically functional proteins. Baculovirus systems for producing heterologous proteins in insect cells are well known to those skilled in the art.
The invention also provides host cells comprising the polypeptides of the invention, polynucleotides encoding the polypeptides of the invention, or vectors comprising such polynucleotides. In some embodiments, the invention also provides a host cell comprising a vector comprising a polynucleotide disclosed herein. In some embodiments, the invention provides a host cell comprising a vector comprising a polynucleotide encoding an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides a host cell comprising a vector comprising a polynucleotide encoding a polypeptide that is part of an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides host cells comprising polynucleotides encoding the anti-BCMA antibodies or antigen binding fragments of the invention. In some embodiments, the cell produces an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides a host cell comprising a vector comprising a polynucleotide encoding a CAR or TCR of the invention. In some embodiments, the invention provides a host cell comprising a vector comprising a polynucleotide molecule encoding a polypeptide that is part of a CAR or TCR described herein. In some embodiments, the invention provides a host cell comprising a polynucleotide encoding a CAR or TCR of the invention. In some embodiments, the host cell produces a BCMA CAR or TCR of the invention.
5.5 cells
The present invention provides cells comprising the polynucleotides disclosed herein. In some embodiments, the invention provides cells comprising polynucleotides encoding the polypeptides disclosed herein. In some embodiments, the invention provides a cell comprising a vector comprising a polynucleotide disclosed herein. In some embodiments, the invention provides cells capable of recombinant expression of the disclosed polypeptides of the invention. The polypeptide may be an anti-BCMA antibody or antigen binding fragment. The polypeptide may be a BCMA CAR. The polypeptide may be a BCMA TCR.
In some embodiments, the cells provided herein are immune effector cells. In some embodiments, the immune effector cell is selected from the group consisting of a T cell, a B cell, a Natural Killer (NK) cell, a NKT cell, a macrophage, a granulocyte, a neutrophil, an eosinophil, a mast cell, and a basophil. In some embodiments, the immune effector cells provided herein are selected from the group consisting of T cells, NK cells, NKT cells, macrophages, neutrophils, and granulocytes. In some embodiments, the immune effector cells provided herein are T cells. In some embodiments, the immune effector cells provided herein are NK cells. In some embodiments, the immune effector cells provided herein are NKT cells. In some embodiments, the immune effector cells provided herein are macrophages. In some embodiments, the immune effector cells provided herein are neutrophils. In some embodiments, the immune effector cells provided herein are granulocytes.
In some embodiments, the immune effector cells provided herein may be genetically engineered. In some embodiments, the genetically engineered immune effector cells provided herein are isolated. In some embodiments, the genetically engineered immune effector cells provided herein are substantially purified.
Thus, in some embodiments, the invention provides immune effector cells capable of recombinantly expressing a polypeptide (e.g., an antibody or CAR) disclosed herein. The invention also provides an immune effector cell (e.g., a T cell) comprising a polynucleotide encoding a polypeptide (e.g., an antibody or CAR) disclosed herein or a vector comprising a polynucleotide disclosed herein. In some embodiments, the invention provides an immune effector cell (e.g., T cell) comprising a polynucleotide encoding an anti-BCMA antibody or antigen binding fragment disclosed herein. In some embodiments, the invention provides immune effector cells (e.g., T cells) capable of recombinantly expressing an anti-BCMA antibody or antigen binding fragment of the invention. In some embodiments, the invention provides an immune effector cell comprising a polynucleotide encoding a BCMA CAR disclosed herein. In some embodiments, the invention provides an immune effector cell (e.g., T cell) capable of recombinantly expressing a BCMA CAR disclosed herein (e.g., BCMA CART cell). In some embodiments, the invention provides an immune effector cell comprising a polynucleotide encoding a BCMA TCR disclosed herein. In some embodiments, the invention provides an immune effector cell (e.g., T cell; e.g., BCMA TCRT cell) capable of recombinantly expressing a BCMA TCR disclosed herein.
In some embodiments, the immune effector cells provided herein are T cells. The T cell may be a cytotoxic T cell, helper T cell, or γδ T, cd4+/cd8+ double positive T cell, cd4+ T cell, cd8+ T cell, CD4/CD8 double negative T cell, cd3+ T cell, naive T cell, effector T cell, cytotoxic T cell, helper T cell, memory T cell, regulatory T cell, th0 cell, th1 cell, th2 cell, th3 (Treg) cell, th9 cell, th17 cell, thαβ helper cell, tfh cell, stem cell-like central memory TSCM cell, central memory TCM cell, effector memory TEM cell, effector memory TEMRA cell, or γδ T cell. In some embodiments, the T cell is a cytotoxic T cell. In some embodiments, the T cells are genetically engineered. In some embodiments, the T cells provided herein are isolated. In some embodiments, the T cells provided herein are substantially purified.
In some embodiments, the genetically engineered cells provided herein are derived from cells isolated from a subject. As used herein, a genetically engineered cell "derived from" a source cell refers to a genetically engineered cell obtained by obtaining a source cell and performing genetic manipulation on the source cell. The source cells may be from natural sources. For example, the source cell may be a primary cell isolated from a subject. The subject may be an animal or a human. The source cell may also be a cell that has been passaged or genetically manipulated in vitro.
In some embodiments, the genetically engineered cells provided herein are derived from cells isolated from a human body. Immune effector cells (e.g., T cells) may be obtained from a number of sources, including peripheral blood mononuclear cells, bone marrow, lymph node tissue, cord blood, thymus tissue, tissue at the site of infection, ascites, pleural effusion, spleen tissue, and tumors. In certain embodiments, T cell lines available in the art may be used. In some embodiments, the genetically engineered cells provided herein are derived from cells isolated from peripheral blood. In some embodiments, the genetically engineered cells provided herein are derived from cells isolated from bone marrow. In some embodiments, the genetically engineered cells provided herein are derived from cells isolated from Peripheral Blood Mononuclear Cells (PBMCs).
In some embodiments, the genetically engineered cells provided herein are derived from cells differentiated in vitro from stem cells or progenitor cells. In some embodiments, the stem or progenitor cells are selected from the group consisting of T cell progenitor cells, hematopoietic stem/progenitor cells, hematopoietic multipotent progenitor cells, embryonic stem cells, and induced multipotent cells. In some embodiments, the genetically engineered cells provided herein are derived from cells differentiated in vitro from T cell progenitors. In some embodiments, the genetically engineered cells provided herein are derived from cells differentiated in vitro from hematopoietic stem/progenitor cells. In some embodiments, the genetically engineered cells provided herein are derived from cells differentiated in vitro from hematopoietic multipotent progenitor cells. In some embodiments, the genetically engineered cells provided herein are derived from cells differentiated in vitro from embryonic stem cells. In some embodiments, the genetically engineered cells provided herein are derived from cells that induce differentiation of pluripotent cells in vitro.
In some embodiments, the invention provides a population of cells comprising the disclosed cells. The cells disclosed herein may comprise a polynucleotide encoding a polypeptide disclosed herein, or recombinantly express a polypeptide disclosed herein. The polypeptide may be an anti-BCMA antibody or antigen binding fragment, BCMA CAR or BCMA TCR. The cell population may be a homogenous cell population. The cell population may be a heterogeneous cell population. In some embodiments, the cell population can be a heterogeneous cell population comprising any combination of the cells disclosed herein. In some embodiments, the population of cells is derived from Peripheral Blood Mononuclear Cells (PBMCs), peripheral Blood Lymphocytes (PBLs), tumor-infiltrating lymphocytes (TILs), cytokine-induced killer Cells (CIKs), lymphokine-activated killer cells (LAKs), or bone marrow-infiltrating lymphocytes (MILs). In some embodiments, the cell populations provided herein are derived from PBMCs. In some embodiments, the cell populations provided herein are derived from PBLs. In some embodiments, the cell populations provided herein are derived from TIL. In some embodiments, the cell populations provided herein are derived from CIK. In some embodiments, the cell populations provided herein are derived from LAK. In some embodiments, the cell populations provided herein are derived from MILs. The cell population can be genetically engineered to recombinantly express a polypeptide (e.g., an antibody or CAR) disclosed herein. In some embodiments, the invention provides a population of cells comprising a polynucleotide encoding a polypeptide (e.g., an antibody or CAR) disclosed herein or a vector having a polynucleotide disclosed herein. In some embodiments, the invention provides a population of cells comprising a polynucleotide encoding an anti-BCMA antibody or antigen binding fragment disclosed herein. In some embodiments, the invention provides a population of cells recombinantly expressing an anti-BCMA antibody or antigen binding fragment disclosed herein. In some embodiments, the invention provides a population of cells comprising a polynucleotide encoding a BCMA CAR disclosed herein. In some embodiments, the invention provides a population of cells (e.g., BCMA CART cells) capable of recombinantly expressing a BCMA CAR disclosed herein. In some embodiments, the invention provides a population of cells comprising a polynucleotide encoding a BCMA TCR disclosed herein. In some embodiments, the invention provides a population of cells (e.g., BCMA TCRT cells) capable of recombinantly expressing a BCMA TCR disclosed herein.
5.6 pharmaceutical compositions
The invention also provides pharmaceutical compositions comprising the anti-BCMA antibodies or antigen binding fragments disclosed herein. The invention also provides a pharmaceutical composition comprising the genetically engineered immune effector cells disclosed by the invention. In some embodiments, the pharmaceutical composition comprises a therapeutically effective amount of an anti-BCMA antibody or antigen binding fragment thereof disclosed herein, further comprising a pharmaceutically acceptable carrier. In some embodiments, the pharmaceutical composition comprises a pharmaceutically effective amount of the genetically engineered cells disclosed herein and a pharmaceutically acceptable carrier. In some embodiments, the pharmaceutical composition is useful in immunotherapy. In some embodiments, the pharmaceutical composition is useful in immunooncology (immunology). In some embodiments, the pharmaceutical composition is useful in inhibiting tumor growth in a subject (e.g., a human patient). In some embodiments, the pharmaceutical compositions are useful in treating cancer in a subject (e.g., a human patient).
In some embodiments, the invention provides a pharmaceutical composition comprising an anti-BCMA antibody or antigen binding fragment provided herein. The anti-BCMA antibody or antigen binding fragment may be present at different concentrations. In some embodiments, the invention provides a pharmaceutical composition comprising 1-1000mg/ml of a soluble anti-BCMA antibody or antigen binding fragment provided herein. In some embodiments, the pharmaceutical composition comprises the soluble anti-BCMA antibody or antigen binding fragment provided herein in an amount of 10-500mg/ml, 10-400mg/ml, 10-300mg/ml, 10-200mg/ml, 10-100mg/ml, 20-100mg/ml, or 50-100mg/ml. In some embodiments, the invention provides pharmaceutical compositions comprising an anti-BCMA antibody or antigen binding fragment provided herein in an amount of about 10mg/ml, about 20mg/ml, about 30mg/ml, about 40mg/ml, about 50mg/ml, about 60mg/ml, about 70mg/ml, about 80mg/ml, about 90mg/ml, about 100mg/ml, about 120mg/ml, about 150mg/ml, about 180mg/ml, about 200mg/ml, about 300mg/ml, about 500mg/ml, about 800mg/ml, or about 1000mg/ml.
Pharmaceutical compositions comprising genetically engineered immune effector cells (e.g., T cells) as disclosed herein may comprise purified cell populations. The percentage of cells in a population of cells, as described herein, can be readily determined by one of ordinary skill in the art using a variety of well known methods. The purity of a cell population comprising genetically engineered cells provided herein can range from about 20% to about 25%, from about 25% to about 30%, from about 30% to about 35%, from about 35% to about 40%, from about 40% to about 45%, from about 45% to about 50%, from about 55% to about 60%, from about 65% to about 70%, from about 70% to about 75%, from about 75% to about 80%, from about 80% to about 85%, from about 85% to about 90%, from about 90% to about 95%, from about 95% to about 100%. In some embodiments, the purity of a population of cells comprising immune effector cells provided herein can range from about 20% to about 30%, from about 20% to about 50%, from about 20% to about 80%, from about 20% to about 100%, from about 50% to about 80%, or from about 50% to about 100%. The dosage can be conveniently adjusted by those skilled in the art; for example, a decrease in purity may require an increase in dosage.
The present invention also provides a kit for preparing a pharmaceutical composition comprising the anti-BCMA antibody or antigen binding fragment of the present disclosure. In some embodiments, the kit comprises an anti-BCMA antibody or antigen binding fragment of the present disclosure in one or more containers, and a pharmaceutically acceptable carrier. In another embodiment, the kit may comprise an anti-BCMA antibody or antigen binding fragment disclosed herein for administration to a subject. In particular embodiments, the kit includes instructions for the preparation and/or administration of an anti-BCMA antibody or antigen binding fragment.
The invention also provides kits for preparing the immune effector cells (e.g., T cells) disclosed herein. In one embodiment, the kit comprises one or more vectors for producing genetically engineered cells (e.g., T cells) that express an anti-BCMA antibody or antigen binding fragment thereof disclosed herein. In certain embodiments, the kits comprise an immune effector cell of the present disclosure in one or more containers.
In some embodiments, the invention provides a pharmaceutical composition comprising an anti-BCMA antibody or antigen binding fragment provided herein, wherein the composition is suitable for topical administration. In some embodiments, topical administration includes intratumoral injection, peritumoral injection, paraneoplastic injection (juxtatumoral injection), intralesional injection and/or injection into a tumor draining lymph node, or essentially any tumor targeting injection wherein the antineoplastic agent is expected to leak into a primary lymph node adjacent to the targeted solid tumor.
Pharmaceutically acceptable carriers that can be used in the compositions provided herein include any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents, and the like, that are physiologically compatible. In some embodiments, the carrier is suitable for intravenous, intramuscular, subcutaneous, parenteral, spinal, or epidermal administration (e.g., by injection or infusion). Depending on the route of administration, the active ingredient (i.e., the anti-BCMA antibody or antigen binding fragment provided by the present invention, or immune effector cells) may be coated in a material to protect the active ingredient from acids and other natural conditions that may inactivate the active ingredient.
The present invention also provides pharmaceutical compositions or formulations that improve the stability of an anti-BCMA antibody or antigen binding fragment to allow for long term storage thereof. In some embodiments, the disclosed pharmaceutical compositions or formulations comprise: (a) The invention discloses an anti-BCMA antibody or antigen binding fragment; (b) a buffer; (c) a stabilizer; (d) a salt; (e) a filler; and/or (f) a surfactant. In some embodiments, the pharmaceutical composition or formulation is capable of being stable for at least 1 month, at least 2 months, at least 3 months, at least 6 months, at least 1 year, at least 2 years, at least 3 years, at least 5 years, or more. In some embodiments, the pharmaceutical composition or formulation is stable when stored at 4 ℃, 25 ℃, or 40 ℃.
Buffers useful in the pharmaceutical compositions or formulations disclosed herein may be weak acids or weak bases for maintaining the acidity (pH) of the solution near a selected value after addition of another acid or base. Suitable buffers can maximize the stability of the formulation by maintaining control over the pH of the formulation. Suitable buffers may also ensure physiological compatibility or optimize solubility. Rheology, viscosity and other properties also depend on the pH of the formulation. Common buffers include, but are not limited to, histidine, citrate, succinate, acetate and phosphate. In some embodiments, the buffer comprises histidine (e.g., L-histidine) with the isotonic agent, and may be pH adjusted with acids or bases known in the art. In certain embodiments, the buffer is L-histidine. In certain embodiments, the pH of the formulation is maintained between about 2 to about 10, or about 4 to about 8.
Stabilizers are added to pharmaceutical products to stabilize the product. Such agents may stabilize proteins in different ways. Common stabilizers include, but are not limited to, amino acids (such as glycine, alanine, lysine, arginine, or threonine), carbohydrates (such as glucose, sucrose, trehalose, raffinose, or maltose), polyols (such as glycerol, mannitol, sorbitol, cyclodextrin, or any kind and molecular weight of dealkylated species), or PEG. In some embodiments, the stabilizing agent is to maximize stability of the FIX polypeptide in the lyophilized formulation. In certain embodiments, the stabilizing agent is sucrose and/or arginine.
Fillers may be added to the pharmaceutical composition or formulation to increase the volume and mass of the product, thereby facilitating its precise metering and handling. Common fillers include, but are not limited to, lactose, sucrose, glucose, mannitol, sorbitol, calcium carbonate, or magnesium stearate.
The surfactant is an amphoteric substance having a hydrophilic group and a hydrophobic group. The surfactant may be anionic, cationic, zwitterionic or nonionic. Nonionic surfactants include, but are not limited to, alkyl ethoxylates, nonylphenol ethers, ethoxylates, polyethylene oxides, polypropylene oxides, fatty alcohols (such as cetyl or oleyl alcohol), cocamide MEA, cocamide DEA, polysorbate, or dodecyldimethylamine oxide. In some embodiments, the surfactant is polysorbate 20 or polysorbate 80.
The pharmaceutical compositions disclosed herein may further comprise one or more of a buffer system, a preservative, a tonicity agent, a chelating agent, a stabilizer, and/or a surfactant, as well as various combinations thereof. The use of preservatives, isotonic agents, chelating agents, stabilizers and surfactants in pharmaceutical compositions is well known to those skilled in the art. Can be referred to Remington:The Science and Practice of Pharmacy,19 th edition,1995。
In some embodiments, the pharmaceutical composition is an aqueous formulation. Such formulations are typically solutions or suspensions, but may also include colloids, dispersions, emulsions and multiphase materials. The term "aqueous formulation" is defined as a formulation containing at least 50% w/w water. Likewise, the term "aqueous solution" is defined as a solution comprising at least 50% w/w water and the term "aqueous suspension" is defined as a suspension comprising at least 50% w/w water.
In some embodiments, the presently disclosed pharmaceutical compositions are lyophilized, to which the physician or patient adds solvents and/or diluents prior to use.
The pharmaceutical compositions disclosed herein may also include a pharmaceutically acceptable antioxidant. Examples of pharmaceutically acceptable antioxidants include: examples of pharmaceutically acceptable antioxidants include: (1) Water-soluble antioxidants such as ascorbic acid, cysteine hydrochloride, sodium bisulfate, sodium metabisulfite, sodium sulfite, and the like; (2) Oil-soluble antioxidants such as ascorbyl palmitate, butyl Hydroxy Anisole (BHA), 2, 6-di-t-butyl-p-cresol (BHT), lecithin, propyl gallate, alpha-tocopherol, and the like; and (3) metal chelators such as citric acid, ethylenediamine tetraacetic acid (EDTA), sorbitol, tartaric acid, phosphoric acid, and the like.
Examples of suitable aqueous and nonaqueous carriers that may be used in the pharmaceutical compositions or formulations of the present invention include water, ethanol, polyols (e.g., glycerol, propylene glycol, polyethylene glycol, and the like) and suitable mixtures thereof, vegetable oils (e.g., olive oil), and injectable organic esters (e.g., ethyl oleate). By using a coating material (e.g., lecithin), by maintaining the desired particle size in the case of dispersions, and by using surfactants, proper fluidity is maintained.
These compositions may also contain adjuvants such as preserving, wetting, emulsifying and dispersing agents. Prevention of the presence of microorganisms can be ensured by the sterilization procedure described above and the addition of various antibacterial and antifungal agents (e.g., parabens, chlorobutanol, phenol sorbic acid, and the like). It may also be desirable to include isotonic agents, for example, sugars, sodium chloride, and the like in the compositions. In addition, prolonged absorption of the injectable pharmaceutical form can be brought about by the addition of agents which delay absorption such as aluminum monostearate and gelatin.
Pharmaceutically acceptable carriers include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersions. Such media and medicaments for pharmaceutically active substances are known in the art. Except insofar as any conventional medium or agent is incompatible with the active compound, its use in the pharmaceutical compositions of the present invention is contemplated. The pharmaceutical composition or formulation may or may not contain a preservative. Supplementary active compounds may be incorporated into the compositions.
Pharmaceutical compositions or formulations must generally be sterile and stable under the conditions of manufacture and storage. The compositions may be formulated as solutions, microemulsions, liposomes, or other ordered structures suitable for high antibody concentrations. The carrier may be a solvent or dispersion medium comprising, for example, water, ethanol, polyols (e.g., glycerol, propylene glycol, and liquid polyethylene glycols, and the like), and suitable mixtures thereof. Proper fluidity is maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersions and by the use of surfactants. In many cases, the composition may include an isotonic agent, for example, sugars, polyalcohols (such as mannitol, sorbitol, or the composition) or sodium chloride in the composition. The absorption of the injectable composition may be prolonged by the addition of agents delaying absorption, such as monostearates and gelatins, to the composition.
If desired, one or more of the above ingredients may be added to the desired amount of active compound in a suitable solvent, followed by sterilization microfiltration to produce a sterile injectable solution. Typically, dispersions are prepared by incorporating the active compound into a sterile vehicle which contains a basic dispersion medium and the required other ingredients from those enumerated in accordance with the present invention. In the case of sterile powders for the preparation of sterile injectable solutions, some methods of preparation are vacuum drying and freeze-drying (lyophilization) which yield a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.
The amount of active ingredient that may be combined with the carrier material in the pharmaceutical compositions or formulations disclosed herein may vary. In some embodiments, the amount of active ingredient that can be combined with the carrier material is that amount that produces a therapeutic effect. Typically, the amount of active ingredient in combination with a pharmaceutically acceptable carrier will range from about 0.01% to about 99%, from about 0.1% to about 70%, or from about 1% to about 30% by percentage.
The pharmaceutical compositions disclosed herein may be prepared with carriers that protect the active ingredient from rapid release, such as controlled release formulations, including implants, transdermal patches, and microencapsulated delivery systems. Biodegradable, biocompatible polymers such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters and polylactic acid may be used. Many methods for preparing such formulations are patented or generally known to those skilled in the art. See, for example,Sustained and Controlled Release Drug Delivery Systems,J.R.Robinson,ed.,Marcel Dekker,Inc.,New York,1978。
in some embodiments, the anti-BCMA antibodies or antigen binding fragments of the present invention, or immune effector cells (e.g., T cells), can be formulated to ensure proper distribution in vivo. For example, the Blood Brain Barrier (BBB) excludes many highly hydrophilic compounds. To ensure that the activating components of the invention cross the BBB (if desired, e.g., for brain cancer), they can be formulated in liposomes, for example. For a method of manufacturing liposomes, see U.S. Pat. nos. 4,522,811;5,374,548; and 5,399,331. Liposomes can include one or more groups that selectively transport to specific cells or organs, thereby enhancing targeted drug delivery (see, e.g., v.ranade (1989) j.clin.pharmacol.29:685). Examples of Ranade (1989) j.clin.pharmacol.29:685) targeting groups include folic acid or biotin (see, e.g., U.S. patent 5,416,016to Low et al), mannosides (Umezawa et al, (1988) biochem.biophys.res.Commun.153:1038), antibodies (p.g. bloeman et al (1995) FEBS lett.357:140; M.Owais et al (1995) Antimicrob. Agents chemther.39:180), surface active protein A receptor (Briscoe et al (1995) am. J. Physiol. 1233:134), pl20 (Schreier et al (1994) J. Biol. Chem. 269:9090), see also K.Keinanen; M.L.Laukkanen (1994) FEBS Lett.346:123; j. killion; fidler (1994) Immunomethods 4:273.
5.7 methods and uses
The invention also provides that the invention discloses: an anti-BCMA antibody or antigen binding fragment; BCMA CAR; BCMA TCR; polynucleotides encoding such anti-BCMA antibodies or antigen binding fragments, and BCMA CARs/TCRs; vectors comprising such polynucleotides; cells expressing the BCMA CAR/TCR; and methods of using pharmaceutical compositions having such cells in the treatment of cancer. Without being bound by theory, the anti-BCMA antibodies or antigen binding fragments, and BCMA CAR/TCR-expressing cells disclosed herein are capable of specifically targeting BCMA-expressing cancer cells in vivo, thereby achieving therapeutic effects of eliminating, lysing, and/or killing the cancer cells. In some embodiments, the methods comprise administering to a subject in need thereof a therapeutically effective amount of an anti-BCMA antibody or antigen binding fragment disclosed herein. In some embodiments, the method comprises administering to a subject in need thereof a therapeutically effective amount of an immune effector cell of the disclosed BCMA CAR. In one embodiment, the method may comprise administering to a subject in need thereof a therapeutically effective amount of BCMA CART disclosed herein.
In some embodiments, the invention provides a method of treating a tumor or cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of an anti-BCMA antibody or antigen binding fragment disclosed herein. In some embodiments, the invention provides the use of an anti-BCMA antibody or antigen binding fragment disclosed herein in the treatment of a tumor or cancer. In some embodiments, the invention provides the use of an anti-BCMA antibody or antigen binding fragment disclosed herein in the manufacture of a medicament for treating a tumor or cancer.
In some embodiments, the invention provides methods of treating a tumor or cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of an immune effector cell (e.g., BCMA CART) disclosed herein. In some embodiments, the invention provides the use of the presently disclosed immune effector cells in the treatment of tumors or cancers. In some embodiments, the invention provides the use of an immune effector cell provided by the invention in the manufacture of a medicament for treating a tumor or cancer. In some embodiments, the presently disclosed cell populations comprising immune effector cells are used in therapy. The population of cells may be homogenous. The population of cells may be heterologous.
In some embodiments, the invention provides a method of treating a tumor or cancer in a subject in need thereof, comprising administering to the subject a therapeutically effective amount of a pharmaceutical composition disclosed herein. In some embodiments, the invention provides the use of the disclosed pharmaceutical compositions in the treatment of tumors or cancers. In some embodiments, the invention provides the use of a pharmaceutical composition provided herein in the manufacture of a medicament for treating a tumor or cancer.
The actual dosage level of the active ingredient (i.e., the anti-BCMA antibody or antigen binding fragment provided herein, or immune effector cells) in the pharmaceutical compositions of the present invention can be varied to achieve levels, compositions, and modes of administration of the active ingredient that are effective to achieve the desired therapeutic response for a particular patient without toxicity to the patient. The dosage level selected will depend on a variety of pharmacokinetic factors including the activity of the particular compositions of the present invention, the route of administration, the time of administration, the rate of excretion, the duration of the treatment, other drugs, compounds and/or materials used in combination with the particular composition being used, the age, sex, weight, condition, general health and prior medical history of the patient being treated, and like factors well known in the medical arts.
The anti-BCMA antibody or antigen binding fragment may be administered as a slow release formulation, in which case frequent administration is not required. The dosage and frequency will vary depending on the half-life of the anti-BCMA antibody or antigen binding fragment thereof in the patient. In therapeutic applications, it is sometimes desirable to administer relatively high doses over relatively short time intervals until the progression of the disease is reduced or terminated, and until the patient exhibits a partial or complete improvement in the symptoms of the disease.
In some embodiments, provided herein are immune effector cells capable of recombinantly expressing a BCMA CAR or TCR disclosed herein useful in the methods of treatment disclosed herein. When using cell therapy, the cells provided by the present invention can be administered at a dose per kilogram of cells (cells/kg) based on the body weight of the subject to which the cells are administered. The cell dose may range from about 10 4 To 10 10 Individual cells/kg body weight, e.g. about 10 5 To about 10 9 About 10 5 To about 10 8 About 10 5 To about 10 7 Or about 10 5 To about 10 6 Individual cells/kg body weight, depending on the mode and location of administration. Generally, in the case of systemic administration, a higher dose is used than in regional administration (administration of the immune effector cells in the tumor region). As described above, the precise determination of what is an effective dose may be based on the personal factors of each subject, including their body type, age, sex, weight, and condition of the particular subject. Dosages can be readily determined by one of ordinary skill in the art based on the disclosure of the present invention and prior knowledge in the art.
The anti-BCMA antibodies or antigen binding fragments thereof, immune effector cells, and pharmaceutical compositions provided herein may be administered to a subject by any method known in the art, including, but not limited to, intrathoracic, intravenous, subcutaneous, intranodal (intranodal administration), intratumoral, intramuscular, intradermal, intrathecal, intrapleural, intraperitoneal, intracranial, spinal, or other parenteral routes of administration, such as by injection or infusion, or direct thymus administration. The phrase "parenteral administration" as used herein refers to modes of administration other than enteral and topical administration, typically by injection, and includes, but is not limited to, intravenous, intramuscular, intraarterial, intrathecal, intracapsular, intraorbital, intracardiac, intradermal, intraperitoneal, transtracheal, subcutaneous, subcuticular, intraarticular, subcapsular, subarachnoid, intraspinal, epidural and intraperitoneal injection and infusion. In some embodiments, subcutaneous administration is employed. In some embodiments, intravenous administration is employed. In some embodiments, oral administration is employed. In one embodiment, the cells provided herein may be delivered locally to a tumor using well known methods, including but not limited to liver or aortic pumps; limb, lung or liver perfusion; in the portal vein; by venous shunt; in a lumen or vessel in the vicinity of a tumor, etc. In another embodiment, the cells provided herein may be administered systemically. In a preferred embodiment, the cells are administered locally at the tumor site. The cells may also be administered intratumorally, for example, by direct injection of the cells at the tumor site and/or into the tumor vasculature. For example, in the case of malignant pleural disease, mesothelioma or lung cancer, it is preferable to administer it intrapleually (see Adusumilli et al Science Translational Medicine (261): 261ra151 (2014)). One skilled in the art can select an appropriate mode of administration based on the type and/or location of the tumor to be treated. The cells may be introduced by injection or by catheter. In one embodiment, intrapleural administration is performed to a subject in need thereof, e.g., using an intrapleural catheter. Optionally, the subject may be optionally administered an expansion and/or differentiation agent prior to, during, or after administration of the cells to increase in vivo cytogenesis provided by the present invention.
Proliferation of cells provided by the present invention is typically performed in vitro, and it is also desirable to perform in vivo after administration to a subject (see Kaiser et al Cancer Gene Therapy 22:72-78 (2015)). Proliferation of cells should be accompanied by survival of the cells to allow for expansion and persistence of the cells (e.g., T cells).
Diseases treatable using the anti-BCMA antibodies or antigen binding fragments, immune effector cells, or pharmaceutical compositions provided herein include any disease or disorder associated with BCMA, as well as any disease or disorder for which BCMA specific expression and/or BCMA is a therapeutic target (collectively, "BCMA-related disease or disorder"). Cancers associated with BCMA expression include hematological malignancies such as multiple myeloma, fahrenheit macroglobulinemia, and hodgkin's lymphoma and non-hodgkin's lymphoma. See review of BCMA, coquery et al, crit Rev immunol.,2012,32 (4): 287-305.
In some embodiments, the BCMA-related disease or disorder is a B-cell related disorder. In some embodiments, the BCMA-related disease or disorder is glioblastoma, lymphomatoid granuloma, post-transplant lymphoproliferative disorder, immunomodulatory disease, heavy chain disease (havy-chain disease), primary or immune cell-related amyloidosis, or an undefined monoclonal gammaglobulosis.
Under certain diseases and conditions BCMA is expressed on malignant cells and cancers. In some embodiments, the cancer is a solid tumor. In some embodiments, the cancer is a hematologic cancer. In some embodiments, the cancer is a B cell malignancy. In some embodiments, the cancer is a lymphoma, leukemia, or plasma cell malignancy. Lymphomas according to the present invention include, but are not limited to, burkitt's lymphoma (e.g., endemic burkitt's lymphoma or sporadic burkitt's lymphoma), non-hodgkin's lymphoma (NHL), hodgkin's lymphoma, fahrenheit macroglobulinemia, follicular lymphoma, small anaplastic lymphoma, mucosa-associated lymphoid tissue lymphoma (MALT), marginal zone lymphoma, spleen lymphoma, lymph node monocytic B cell lymphoma, immunoblastic lymphoma, large cell lymphoma, diffuse mixed cell lymphoma (diffuse mixed cell lymphoma), pulmonary B cell vascular central lymphoma (pulmonary B cell angiocentric lymphoma), small lymphocytic lymphoma, primary mediastinal B cell lymphoma, lymphoplasmacytic lymphoma (LPL), or Mantle Cell Lymphoma (MCL). The leukemias described herein include, but are not limited to, chronic Lymphocytic Leukemia (CLL), plasma cell leukemia, or Acute Lymphocytic Leukemia (ALL).
The plasma cell malignancies described herein include, but are not limited to, multiple Myeloma (MM) and plasmacytoma.
In some embodiments, the anti-BCMA antibodies or antigen binding fragments, immune effector cells, or pharmaceutical compositions provided herein are useful for treating MM. In some embodiments, the MM to be treated is a non-secretory MM. In some embodiments, the MM is a smoky (smoldering) MM. In some embodiments, the disease or disorder is relapsed and/or refractory multiple myeloma (R/R MM).
Among these diseases, BCMA-related disorders or conditions (e.g., BCMA-expressing cancers) that may be treated include, but are not limited to, neuroblastoma, renal cell carcinoma, colon cancer, colorectal cancer, breast cancer, epithelial squamous cell carcinoma, melanoma, myeloma (e.g., multiple myeloma), gastric cancer, brain cancer, lung cancer, pancreatic cancer, cervical cancer, ovarian cancer, liver cancer, bladder cancer, prostate cancer, testicular cancer, thyroid cancer, uterine cancer, adrenal cancer, and head and neck cancer.
In some embodiments, the method comprises: a subject having, suspected of having, or at risk of having a BCMA-related disease or disorder is identified. Accordingly, the present invention provides a method for identifying a subject suffering from a disease or disorder associated with increased BCMA expression and selecting it for treatment using an anti-BCMA antibody or antigen binding fragment, immune effector cell, or pharmaceutical composition provided herein.
In some embodiments, the subject may be screened for the presence of a disease or disorder associated with increased BCMA expression, e.g., a BCMA expressing cancer. In some embodiments, the method comprises: screening for or detecting the presence of BCMA related diseases (e.g., tumors). Thus, in some embodiments, a sample may be obtained from a patient suspected of having a disease or disorder associated with elevated BCMA expression, and analyzed for expression levels of BCMA. In some embodiments, a subject positive for detection of a BCMA-related disease or disorder may be selected for treatment by the methods of the invention, and a therapeutically effective amount of an anti-BCMA antibody or antigen binding fragment, immune effector cell, or pharmaceutical composition provided herein may be administered.
In cancer treatment, cancer or tumor cells of a subject may be eliminated, but any clinical improvement is beneficial. The anti-tumor effect can be manifested by a decrease in tumor volume, a decrease in the number of tumor cells, a decrease in the number of metastases, an increase in life expectancy, or an improvement in various physiological symptoms associated with the cancer condition. Antitumor effects can also be manifested by the ability of the cells or pharmaceutical compositions provided herein to prevent tumorigenesis at a first time. In some embodiments, an "anti-tumor effect" may be manifested by a reduction in cancer-induced immunosuppression. Clinical improvement includes a reduced risk or rate of progression of cancer or tumor or a reduction in pathological consequences. It is also understood that the method of treating cancer may include any effect that ameliorates a sign or symptom associated with the cancer. Such signs or symptoms include, but are not limited to, reducing tumor burden, including inhibiting tumor growth, slowing tumor growth rate, reducing tumor size, reducing tumor number, eliminating tumors, all of which can be measured using conventional tumor imaging techniques well known in the art. Other signs or symptoms associated with cancer include, but are not limited to, fatigue, pain, weight loss, and other signs or symptoms associated with various cancers.
In some embodiments, the methods or uses provided herein can reduce tumor burden. Thus, administration of an anti-BCMA antibody or antigen binding fragment, cell, or pharmaceutical composition of the present disclosure can reduce the number of tumor cells, reduce tumor size, and/or eradicate a tumor in a subject. Methods for monitoring a patient's response to administration of the presently disclosed pharmaceutical compositions are known in the art and may be used in accordance with the presently disclosed methods. In some embodiments, methods known in the art can be used to monitor a patient's response to administration of the disclosed methods of treatment.
In the presently disclosed methods, a therapeutically effective amount of an anti-BCMA antibody or antigen binding fragment, cell, or pharmaceutical composition of the present disclosure is administered to a subject in need of cancer treatment. The subject may be a mammal. In some embodiments, the subject is a human. In some embodiments, the individuals are free of clinically measurable tumors. However, they are suspected of being at risk of disease progression, either near the original tumor site or by metastasis. This group can be further subdivided into high risk and low risk individuals. Subdivision is based on features observed before or after the initial processing. These features are known in the clinic and are appropriately defined for different types of cancer. A typical feature of the high risk subgroup is that the tumor invades adjacent tissue, or shows lymph node metastasis.
In some embodiments, the subject suffers from persistent or recurrent disease following the use of another BCMA specific antibody and/or BCMA-CART and/or other therapies, including chemotherapy, radiation therapy, and/or Hematopoietic Stem Cell Transplantation (HSCT), e.g., allogeneic HSCT or autologous HSCT. In some embodiments, the administration of the BCMA inhibitor is effective in treating a subject despite the subject having developed resistance to another BCMA targeted therapy. In some embodiments, the subject is determined to be at risk of relapse, e.g., high risk of relapse, although not relapse, and thus the compound or composition is administered prophylactically, e.g., to reduce the likelihood of relapse or prevent relapse.
In some embodiments, the subject is a subject that meets transplantation conditions, e.g., meets conditions for Hematopoietic Stem Cell Transplantation (HSCT), e.g., allogeneic HSCT or autologous HSCT. In some embodiments, the subject has not previously received a transplant, although eligible, prior to administration of the BCMA binding molecule (including an anti-BCMA antibody or antigen binding fragment, immune effector cell, or pharmaceutical composition provided herein). In some embodiments, the subject is a subject that does not meet transplantation conditions, e.g., does not meet Hematopoietic Stem Cell Transplantation (HSCT), e.g., allogeneic HSCT or autologous HSCT.
In some embodiments, the invention provides methods comprising adoptive cell therapies by administering to a subject genetically engineered immune effector cells expressing a provided recombinant receptor, wherein the recombinant receptor contains a BCMA-binding molecule (e.g., a BCMA CAR provided herein). Such administration can promote activation of cells (e.g., T cell activation) in a manner that targets BCMA, thereby enabling targeted destruction of cells of a disease or disorder. Thus, the methods and uses provided include methods and uses of adoptive cell therapy. In some embodiments, the method comprises administering the cell or a composition comprising the cell to a subject, e.g., a subject having, at risk of having, or suspected of having the disease, condition, or disorder. In some embodiments, the cells, cell populations, and compositions are administered to a subject having a particular disease or disorder to be treated by adoptive cell therapy (e.g., adoptive T cell therapy). In some embodiments, the cells or compositions are administered to the subject, e.g., a subject suffering from or at risk of likely to suffer from the disease or disorder. In some aspects, the methods thus treat, e.g., ameliorate, one or more symptoms of the disease or disorder, e.g., by reducing tumor burden in BCMA-expressing cancers.
Methods of cell administration for adoptive cell therapy are known in the art and may be used in conjunction with the provided methods and compositions. For example, adoptive T cell therapy methods have been described, for example, in U.S. patent application No.2003/0170238 to grenberg et al; U.S. Pat. No.4,690,915 to Rosenberg; rosenberg (2011) Nat Rev Clin Oncol.8 (10): 577-85). See, e.g., themeli et al (2013) Nat Biotechnol.31 (10): 928-933; tsukahara et al (2013) Biochem Biophys Res Commun 438 (1): 84-9; davila et al (2013) PLoS ONE 8 (4): e61338.
In some embodiments, the cell therapy, e.g., adoptive cell therapy (e.g., adoptive T cell therapy), is performed by autologous transplantation, wherein the cells are isolated and/or prepared by isolation from the subject that will receive the cell therapy, or from a sample from such subject. Thus, in some embodiments, the cells are derived from a subject (e.g., patient) in need of treatment, and the cells are administered to the same subject after isolation and treatment.
In some embodiments, the cell therapy, e.g., adoptive cell therapy (e.g., adoptive T cell therapy), is performed by allogeneic transplantation, wherein the cells are isolated and/or prepared from another subject, which refers to a subject other than the subject (e.g., the first subject) that will receive or ultimately receive the cell therapy. In these embodiments, the cells are then administered to a different individual of the same species, e.g., a second subject. In some embodiments, the first and second subjects are genetically identical. In some embodiments, the first and second subjects are genetically similar. In some embodiments, the second subject expresses the same HLA class or supertype as the first subject.
The anti-BCMA antibodies or antigen binding fragments, cells, or pharmaceutical compositions provided herein may be administered in combination with medical devices known in the art. For example, in some embodiments, a needleless hypodermic injection device can be used, such as that described in U.S. Pat. nos.5,399,163;5,383,851;5,312,335;5,064,413;4,941,880;4,790,824; or 4,596,556. Examples of the use of well known implants and modules described herein include: U.S. patent No.4,487,603, which discloses an implantable miniature infusion pump for dispensing a medicament at a controlled rate; U.S. patent No.4,486,194, which discloses a therapeutic device for transdermal drug delivery; U.S. Pat. No.4,447,233, which discloses a medication infusion pump for delivering medication at a precise infusion rate; U.S. Pat. No.4,447,224, which discloses a variable flow implantable infusion device for continuous administration; U.S. Pat. No.4,439,196, which discloses an osmotic drug delivery system having multiple chambers; and U.S. patent No.4,475,196 discloses an osmotic drug delivery system. These patents are incorporated by reference into the present invention. Many other such implants, delivery systems and modules are known to those skilled in the art.
Combination therapy with agents of different mechanisms of action may produce additive or synergistic effects. Combination therapy may allow for lower doses of each agent than those used in monotherapy, thereby reducing toxic side effects and/or increasing the therapeutic index of the presently disclosed agents. Combination therapy may reduce the likelihood of drug resistant cancer cell production. In some embodiments, the additional treatment results in an increase in the therapeutic index of the cells or pharmaceutical compositions described herein. In some embodiments, the additional treatment results in a reduction in toxicity and/or side effects of the cells or pharmaceutical compositions described herein. In some embodiments, an anti-BCMA antibody or antigen binding fragment, cell, or pharmaceutical composition of the invention can be administered in combination with additional therapy. In some embodiments, the additional treatment may be surgical resection, radiation therapy, or chemotherapy.
The additional treatment may be administered prior to, concurrently with, or after administration of the anti-BCMA antibodies or antigen binding fragments, cells, or pharmaceutical compositions thereof described herein. The co-administration may include co-administration, either in a single pharmaceutical formulation or using separate formulations, or sequentially in either order, but is typically performed over a period of time so that all of the active agents may exert their biological activities simultaneously. One skilled in the art can readily determine an appropriate regimen for administration of the pharmaceutical compositions of the invention and the combination additional treatment, including the timing and dosage of the additional agents used in the combination treatment, based on the needs of the subject being treated.
5.8 preparation method
5.8.1 polynucleotides, polypeptides and antibodies
Polynucleotides provided herein may be prepared, manipulated and/or expressed using any of the mature techniques known and available in the art. A number of carriers may be used. Examples of vectors are plasmids, autonomously replicating sequences and transposable elements.Typical transposon systems such as Sleeping Beauty (Sleeping beautyy) and PiggyBac may be used, which may be stably integrated into the genome (e.g., ivics et al, cell,91 (4): 501-510 (1997);
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other exemplary vectors include, but are not limited to, plasmids, phages, cosmids, artificial chromosomes (e.g., yeast Artificial Chromosome (YAC), bacterial Artificial Chromosome (BAC) or P1-derived artificial chromosome (PAC)), phages (e.g., lambda phage or M13 phage), and animal viruses. Examples of animal virus species that can be used as vectors include, but are not limited to, retroviruses (including lentiviruses), adenoviruses, adeno-associated viruses, herpesviruses (e.g., herpes simplex viruses), poxviruses, baculoviruses, papillomaviruses, and papovaviruses (e.g., SV 40). Examples of expression vectors are the pClneo vector (Promega) for expression in mammalian cells; plenti4/V5-Dest for lentiviral mediated gene transduction and expression in mammalian cells TM 、Plenti6/V5-Dest TM And Plenti6.2/V5-GW/Lacz (Invitrogen).
In some embodiments, the vector is an episomal vector (episomal vector) or a vector maintained extrachromosomally. As used herein, the term "episomal" refers to a vector that is capable of replication without integration into the chromosomal DNA of the host and without gradual loss from dividing host cells, and also means that the vector replicates extrachromosomally or in episomal form. The vector is engineered to contain sequences encoding a DNA origin of replication or "ori" from lymphotrophic or gamma herpes viruses, adenoviruses, SV40, bovine papilloma viruses or yeasts, in particular an origin of replication of lymphoherpesviruses or gamma herpesviruses corresponding to oriP of EBV. In some embodiments, the lymphoherpesvirus may be Epstein Barr Virus (EBV), kaposi's Sarcoma Herpesvirus (KSHV), cynomolgus monkey Herpesvirus (HS), or Marek's Disease Virus (MDV). Epstein Barr Virus (EBV) and Kaposi's Sarcoma Herpes Virus (KSHV) are also examples of gamma herpes viruses. Typically, the host cell includes viral replication transactivators that activate replication.
"expression control sequences", "control elements" or "regulatory sequences" present in an expression vector refer to the untranslated regions of the vector (e.g., origins of replication, selection agents, promoters, enhancers, introns of the translation initiation signal (Shine Dalgarno sequence or Kozak sequence), polyadenylation sequences, 5 'and 3' untranslated regions) that interact with host cell proteins for transcription and translation. The strength and specificity of these elements vary. Any number of suitable transcription and translation elements may be used, including ubiquitous promoters and inducible promoters, depending on the vector system and host used.
Illustrative common expression control sequences useful in the present invention include, but are not limited to, the Cytomegalovirus (CMV) immediate early promoter, the viral monkey virus (SV 40) promoter (e.g., early or late), the Moloney murine leukemia virus (MoMLV) LTR promoter, the Rous Sarcoma Virus (RSV) LTR, the Herpes Simplex Virus (HSV) (thymidine kinase) promoter, the H5, P7.5 and P11 promoters from vaccinia virus, the elongation factor 1-alpha (EF 1 a) promoter, the early growth response factor 1 (EGR 1), ferritin H (FerH), ferritin L (FerL), 3-phosphoglyceraldehyde dehydrogenase (GAPDH), eukaryotic translation initiation factor 4A1 (EIF 4A 1), heat shock 70kDa protein 5 (HSPA 5), heat shock protein 90kDa beta-member 1 (HSP 90B 1), heat shock protein 70kDa (HSP-kinesin), human SA 26 gene sites (Irons et al, 3779), chicken UBC 35, and the PGK promoter (PbK) protein promoter.
Illustrative inducible promoters/systems include, but are not limited to, steroid inducible promoters (e.g., gene promoters encoding glucocorticoids or estrogen receptors (induced by treatment with the corresponding hormone), metallothionein promoters (induced by treatment with various heavy metals), MX-1 promoters (induced by interferon), "gene-switched" mifepristone-regulatory systems (Sirin et al, 2003, gene,323: 67), cumate-induced gene-switching (WO 2002/088346), tetracycline-dependent regulatory systems, and the like. The anti-BCMA antibodies or antigen binding fragments thereof of the present invention can be prepared by any method known in the art, including chemical synthesis and recombinant expression techniques. The practice of the present invention employs, unless otherwise indicated, molecular biology, microbiology, genetic analysis, recombinant DNA, organic chemistry, biochemistry, PCR, oligonucleotide synthesis and modification, nucleic acid hybridization, and related conventional techniques in the art. These techniques are described in the references cited herein and are fully explained in the literature. See, e.g., maniatis et al (1982) MOLECULAR CLONING: A LABORATORY MANUAL, cold Spring Harbor Laboratory Press; sambrook et al (1989), MOLECULAR CLONING: A LABORATORY MANUAL, second Edition, cold Spring Harbor Laboratory Press; sambrook et al (2001) MOLECULAR CLONING: A LABORATORY MANUAL, cold Spring Harbor Laboratory Press, cold Spring Harbor, NY; ausubel et al CURRENT PROTOCOLS IN MOLECULAR BIOLOGY, john Wiley & Sons (1987 and annual updates); CURRENT PROTOCOLS IN IMMUNOLOGY, john Wiley & Sons (1987 and annual updates) Gait (ed.) (1984) OLIGONUCLEOTIDE SYNTHESIS: A PRACTICAL APPROACH, IRL Press; eckstein (ed.) (1991) OLIGONUCLEOTIDES AND ANALOGUES: A PRACTICAL APPROACH, IRL Press; birren et al (eds.) (1999) geme ANALYSIS: A LABORATORY MANUAL, cold Spring Harbor Laboratory Press; borrebaeck (ed.) (1995) ANTIBODY ENGINEERING, second Edition, oxford University Press; lo (ed.) (2006) ANTIBODY ENGINEERING: METHODS AND PROTOCOLS (METHODS IN MOLECULAR BIOLOGY); vol.248, humana Press, inc; each of which is incorporated by reference in its entirety.
The polypeptides of the invention (e.g., the anti-BCMA antibodies or antigen binding fragments) can be produced and isolated using methods well known in the art. Peptides can be synthesized in whole or in part using chemical methods (see, e.g., caruthers (1980), nucleic Acids Res. Symp. Ser.215; horn (1980); and Banga, A.K., THERAPEUTIC PEPTIDES AND PROTEINS, FORMULATION, PROCESSING AND DELIVERY SYSTEMS (1995) Technomic Publishing Co., lancaster, pa.). Peptide synthesis can be performed using a variety of solid phase techniques (see, e.g., roberge Science 269:202 (1995); merrifield, methods. Enzymol.289:3 (1997)) and automated synthesis can be achieved, e.g., using an ABI 431A peptide synthesizer (Perkin Elmer) according to manufacturer's instructions. Peptides can also be synthesized using combinatorial methods. The artificially synthesized residues and polypeptides may be synthesized using various procedures and methods known in the art (see, e.g., ORGANIC SYNTHESES COLLECTIVE VOLUMES, gilman, et al (Eds) John Wiley & Sons, inc., NY). The modified polypeptides may be produced by chemical modification (see, e.g., belosus, nucleic Acids Res.25:3440 (1997); frenkel, free radio. Biol. Med.19:373 (1995); and Blommers Biochemistry 33:7886 (1994)). Peptide sequence variations, derivatives, substitutions and modifications can also be made using oligonucleotide-mediated (site-directed) mutagenesis, alanine scanning, and PCR-based mutagenesis. Site-directed mutagenesis (Carter et al, nucleic acids Res.,13:4331 (1986)), zoller et al, nucleic acids Res., 10:6487 (1987)), cassette mutagenesis (Wells et al, gene 34:315 (1985)), restriction-selective mutagenesis (Wells et al, philos. Trans. R. Soc. London serA 317:415 (1986)), and other techniques can be performed on cloned DNA to produce peptide sequences, variants, fusions and chimeras of the invention, as well as variants, derivatives, substitutions and modifications thereof.
The polypeptides of the invention may be prepared using a variety of techniques known in the art, including using hybridoma and recombinant techniques, or combinations thereof. In some embodiments, recombinant expression vectors are used to express polynucleotides encoding the polypeptides of the invention. For example, the recombinant expression vector may be a replicable DNA construct comprising a synthetic or cDNA derived DNA fragment encoding a polypeptide operably linked to appropriate transcriptional and/or translational regulatory elements derived from mammalian, microbial, viral, or insect genes. In some embodiments, the coding sequences for the polypeptides disclosed herein may be ligated into such expression vectors for expression in mammalian cells. In some embodiments, viral vectors are used. DNA regions are "operably linked" when they are functionally related to each other. For example, if the promoter controls transcription of a sequence, it is operably linked to a coding sequence; or operably linked to a coding sequence if the ribosome binding site is positioned so as to permit translation. In some embodiments, structural elements intended for use in yeast expression systems include a leader sequence that may enable the host cell to secrete the translated protein extracellularly. In some embodiments, the polypeptide may include an N-terminal methionine residue in the absence of leader or transport sequences for expression of the recombinant protein.
A variety of expression host/vector combinations may be used. Host cells suitable for expression include prokaryotes, yeast cells, insect cells, or higher eukaryotic cells under the control of appropriate promoters. Suitable cloning and expression vectors for bacterial, fungal, yeast and mammalian cell hosts, as well as protein production methods, including antibody production methods, are well known in the art. Expression vectors useful for bacterial hosts include known bacterial plasmids, such as those from E.coli, including pCR1, pBR322, pMB9 and derivatives thereof, as well as plasmids of a broader host range, such as M13 and other filamentous single-stranded DNA phages.
Expression vectors useful for eukaryotic hosts include, for example, vectors comprising expression control sequences from SV40, bovine papilloma virus, adenovirus and cytomegalovirus. Examples of suitable mammalian host cell lines include, but are not limited to, COS-7 (derived from monkey kidney), L-929 (derived from murine fibroblasts), C127 (derived from murine mammary tumors), 3T3 (derived from murine fibroblasts), CHO (derived from Chinese hamster ovary), heLa (derived from human cervical cancer), BHK (derived from hamster kidney fibroblasts), HEK-293 (derived from human embryonic kidney) cell lines, and variants thereof. Mammalian expression vectors may include non-transcriptional elements (e.g., origins of replication), suitable promoters and enhancers linked to the gene to be expressed, and other 5 'or 3' flanking non-transcribed and 5 'or 3' untranslated sequences (e.g., the necessary ribosome binding sites, polyadenylation sites, splice donor and acceptor sites, and transcription termination sequences). Expression of recombinant proteins in insect cell culture systems (e.g., baculoviruses) also provides a powerful method for producing correctly folded and biologically functional proteins. Baculovirus systems for producing heterologous proteins in insect cells are well known to those skilled in the art.
Antibodies and antigen binding fragments thereof provided herein include, but are not limited to, monoclonal antibodies, polyclonal antibodies, synthetic antibodies, human antibodies, humanized antibodies, and antigen binding fragments thereof.
Methods of antibody preparation are well known in the art. See, e.g., harlow et al, ANTIBODIES: A LABORATORY MANUAL, (Cold Spring Harbor Laboratory Press,2nd ed.1988); hammerling et al, in MONOCLONAL ANTIBODIES AND T-CELL HYBRIDOMAS 563 681 (Elsevier, N.Y., 1981), each of which is incorporated herein by reference in its entirety. For antibodies used in the human body, it may be preferable to use human antibodies. Fully human antibodies are particularly desirable for therapeutic treatment of human subjects. Human antibodies can be prepared by a variety of methods known in the art, including phage display methods using libraries of antibodies derived from human immunoglobulin sequences, including improvements to these techniques. See also, U.S. Pat. nos. 4,444,887and 4,716,111; and PCT publications WO 98/46645, WO 98/50433, WO 98/24893, WO98/16654, WO 96/34096, WO 96/33735, and WO 91/10741; each of which is incorporated by reference in its entirety. A human antibody may also be an antibody in which the heavy and light chains are encoded by nucleotide sequences derived from one or more human DNA sources.
Human antibodies can also be produced using transgenic mice that are incapable of expressing functional endogenous immunoglobulins, but are capable of expressing human immunoglobulin genes. For example, human heavy and light chain immunoglobulin gene complexes may be introduced into mouse embryonic stem cells randomly or by homologous recombination. In addition, human variable, constant and diversity regions may be introduced into mouse embryonic stem cells in addition to human heavy and light chain genes. The mouse heavy chain and light chain immunoglobulin genes can be introduced into human immunoglobulin gene loci singly or simultaneously by homologous recombination so as to make the human immunoglobulin gene loci nonfunctional. For example, homozygous deletion of the antibody heavy chain Junction (JH) gene in chimeric and germ-line mutant mice is described as resulting in complete inhibition of endogenous antibody production. The modified embryonic stem cells are expanded and microinjected into blasts to generate chimeric mice. The chimeric mice are then incubated to produce homozygous offspring expressing the human antibodies. Transgenic mice are immunized in a normal manner with a selected antigen (e.g., all or part of a polypeptide of the invention). For example, anti-BCMA antibodies against human BCMA antigen can be obtained from immunized transgenic mice using conventional hybridoma technology. The human immunoglobulin transgenes carried by transgenic mice rearrange during B cell differentiation, followed by class switching and somatic mutation. Thus, using such techniques, therapeutically useful IgG, igA, igM and IgE antibodies, including but not limited to IgG1 (γ1) and IgG3, can be produced. For a brief description of this technology for the production of human antibodies, see Lonberg and Huszar (int. Rev. Immunol.,13:65-93 (1995)). For a detailed discussion of the techniques for producing human antibodies and human monoclonal antibodies, and protocols for producing such antibodies see, for example, PCT publication Nos. WO 98/24893, WO 96/34096, and WO 96/33735; and U.S. Pat. nos.5,413,923;5,625,126;5,633,425;5,569,825;5,661,016;5,545,806;5,814,318; and 5,939,598, each of which is incorporated by reference in its entirety. In addition, abgenix, inc (Freemont, calif.) and Genpharm (Jose, calif.) can provide human antibodies to selected antigens using techniques similar to those described above. For a specific discussion of transduction of human germline immunoglobulin gene arrays in germline mutant mice see, e.g., jakobovits et al, proc.Natl.Acad.Sci.USA,90:2551 (1993); jakobovits et al, nature,362:255-258 (1993); bruggermann et al, year in immunol.,7:33 (1993); and Duchoal et al, nature,355:258 (1992), the gene array will result in the production of human antibodies upon antigen challenge.
Human antibodies can also be obtained from phage display libraries (Hoogenboom et al, J. Mol. Biol.,227:381 (1991); marks et al, J. Mol. Biol.,222:581-597 (1991); vaughan et al, nature Biotech.,14:309 (1996)). Phage display technology (McCafferty et al, nature,348:552-553 (1990)) can be used to produce human antibodies and antibody fragments in vitro from the immunoglobulin variable (V) region gene library of a non-immunized donor. According to this technique, the antibody V region genes are cloned into the framework of the major or minor coat protein genes of filamentous phage, such as M13 or fd, and displayed as functional antibody fragments on the phage particle surface. Since the filamentous particle contains copies of single-stranded DNA of the phage genome, selection based on antibody functionality will also result in selection of genes encoding antibodies with these properties. Thus, phages mimic certain properties of B cells. Phage display can be performed in a variety of forms; for a review, see, e.g., johnson and Chiswell, current Opinion in Structural Biology 3:564-571 (1993). Several sources of V gene fragments are available for phage display. A collection of different anti-oxazolone antibodies was isolated from a small random combinatorial library of V genes derived from the spleen of non-immunized mice, nature,352:624628 (1991). The V gene bank can be constructed from an immunized human donor and antibodies to a variety of antigens, including autoantigens, can be isolated by the methods described in Marks et al, j.mol. Biol.,222:581-597 (1991), or Griffith et al, EMBO j.,12:725-734 (1993). Reference is also made to U.S. Pat. Nos.5,565,332 and 5,573,905, each of which is incorporated herein by reference in its entirety.
Human antibodies may also be produced by in vitro activated B cells (see, U.S. Pat. nos.5,567,610 and 5,229,275, each of which is incorporated herein by reference in its entirety). Human antibodies can also be produced in vitro using hybridoma techniques such as, but not limited to, those described by Roder et al methods enzymol.121:140-167 (1986)).
Alternatively, in some embodiments, the non-human antibody is humanized wherein specific sequences or regions of the antibody are modified to increase similarity to antibodies naturally occurring in humans. In some embodiments, the antigen binding domain portion is humanized.
Humanized antibodies can be produced using a variety of techniques known in the art, including, but not limited to, CDR-grafting (see, e.g., european Patent No. EP 239,400; international publication No. WO 91/09967; and U.S. Pat. nos.5,225,539,5,530,101,and 5,585,089, each of which is incorporated herein by reference in its entirety), trim (veneering) or surface remodeling (resurfacing) (see, e.g., european Patent nos. EP 592,106and EP 519,596;Padlan,1991,Molecular Immunology,28 (4/5): 489-498;Studnicka et al, 1994,Protein Engineering,7 (6): 805-814;and Roguska et al, 1994, PNAS,91:969-973, each of which is incorporated by reference in its entirety), chain shuffling (see, e.g., U.S. Pat.No.5,565,332, each of which is incorporated by reference in its entirety), and U.S. Pat Application Publication No. US2005/0042664,U.S.Patent Application Publication No.US2005/0048617,U.S.Pat.No.6,407,213,U.S.Pat.No.5,766,886,International Publication No.WO 9317105,Tan et al, J.Immunol, 169:1119-25 (2002), caldas et al, protein en, 13 (5): 353-60 (2000), morea et al, methods,20 (3): 267-79 (2000), baca et al, J.Biol.Chem, 272 (16 10678-84 (1997), roguska et al, protein en, 9 (10): 895-904 (1996), coco et al, 55, sangusta et al, 1995-55, and 1995) and 1995 (35), and 35, 35 (35) and 35, and 55. 235 (3) the techniques disclosed in 959-73 (1994), each of which is incorporated by reference in its entirety. In general, framework residues in the framework regions can be replaced with corresponding residues from a CDR donor antibody to alter, preferably improve, antigen binding. These framework substitutions are identified by methods well known in the art, for example, by modeling the interactions of CDRs with framework residues to identify framework residues important for antigen binding, and sequence comparisons to identify aberrant framework residues at specific positions. ( See, e.g., queen et al, u.s.pat.no.5,585,089; and Riechmann et al, 1988, nature,332:323, each of which is incorporated herein by reference in its entirety. )
Humanized antibodies have one or more amino acid residues introduced from a non-humanized source. These non-human amino acid residues are often referred to as "import" residues, which are typically taken from an "import" variable region. Thus, a humanized antibody comprises one or more CDRs from a non-human immunoglobulin molecule and a framework region from a human. Humanization of antibodies is well known in the art and can be performed essentially as described by Winter and coworkers (Jones et al, nature,321:522-525 (1986); riechmann et al, nature,332:323-327 (1988); verhoeyen et al, science,239:1534-1536 (1988)), with rodent CDR or CDR sequences replacing the corresponding sequences of human antibodies, namely CDR-grafting (EP 239,400;PCT Publication No.WO 91/09967;and U.S.Pat.Nos.4,816,567;6,331,415;5,225,539;5,530,101;5,585,089;6,548,640, the contents of which are incorporated herein by reference in their entirety). In such humanized chimeric antibodies, significantly less than the entire human variable domain is replaced by the corresponding sequence from a non-human species. In practice, humanized antibodies are typically human antibodies in which some CDR residues and possibly some FR residues are replaced by residues at similar sites in rodent antibodies. Humanization of the antibodies may also be achieved by veneering or resurfacing (EP 592,106;EP 519,596;Padlan,1991,Molecular Immunology,28 (4/5): 489-498;Studnicka et al, protein Engineering,7 (6): 805-814 (1994) and Roguska et al, PNAS,91:969-973 (1994)) or chain shuffling (U.S. Pat. No.5,565,332), the contents of which are incorporated herein by reference in their entirety.
In the preparation of humanized antibodies, human variable domains (including light and heavy chains) are selected to reduce antigenicity. The variable domain sequences of rodent antibodies were screened against the entire library of known human variable region sequences according to the so-called "best match" method. The human sequence closest to the rodent sequence was then used as the human Framework (FR) for the humanized antibody (Sims et al, J.Immunol.,151:2296 (1993); chothia et al, J.mol. Biol.,196:901 (1987), the contents of which are incorporated herein by reference in their entirety). Another approach uses a specific framework of all human antibody consensus sequences derived from a specific light chain or heavy chain subgroup. The same framework can be used for several different humanized antibodies (Carter et al, proc. Natl. Acad. Sci. USA,89:4285 (1992); presta et al, J. Immunol, 151:2623 (1993), the contents of which are incorporated herein by reference in their entirety).
Antibodies can be humanized and retain high affinity for the antigen of interest and other favorable biological properties. For example, humanized antibodies can be prepared by analyzing a parent sequence and various conceptual humanized products using three-dimensional models of the parent sequence and the humanized sequence. Three-dimensional immunoglobulin models are generally available and familiar to those skilled in the art. The computer program may illustrate and display the possible three-dimensional conformational structures of the selected candidate immunoglobulin sequences. Examining these displays allows for analysis of the likely role of residues in the function of the candidate immunoglobulin sequence, i.e., analysis of residues that affect the ability of the candidate immunoglobulin to bind its antigen. In this way, FR residues can be selected and combined from the receptor and input sequences such that the desired antibody characteristics, e.g., enhanced affinity for the target antigen, are achieved. Generally, CDR residues are directly and most essentially involved in the effect of antigen binding.
"humanized antibodies retain antigen specificity similar to the original antibody, e.g., the ability to bind human BCMA antigen. However, using certain humanization methods, the affinity and/or specificity of antibodies for binding to a particular antigen can be improved using a "directed evolution" method, which is described in Wu et al, j.mol.biol.,294:151 (1999), the contents of which are incorporated herein by reference in their entirety.
5.8.2 genetically engineered immune effector cells
In some embodiments, the invention provides genetically engineered immune effector cells comprising a polynucleotide encoding a BCMA CAR or TCR disclosed herein. In some embodiments, the invention provides genetically engineered immune effector cells capable of recombinantly expressing the disclosed BCMA CARs or TCRs of the invention. In some embodiments, the invention provides a genetically engineered immune effector cell comprising a vector comprising a polynucleotide encoding a BCMA CAR or TCR disclosed herein. In some embodiments, the immune effector cell is a T cell.
5.8.2.1 genetic engineering method
With respect to producing cells capable of recombinantly expressing the BCMA CARs or TCRs disclosed herein, one or more polynucleotides encoding the BCMA CARs or TCRs are introduced into a target cell using a suitable expression vector. One or more BCMA CAR or TCR-encoding polynucleotides are transferred to a target immune effector cell (e.g., T cell). The genetically engineered cells may also express an anti-BCMA antibody or antigen binding fragment disclosed herein.
In some embodiments, the invention provides methods of genetically engineering immune effector cells by transferring polynucleotides provided herein to immune effector cells using a non-viral delivery system. The BCMA CAR or TCR-encoding polynucleotide may be mRNA, which allows for transient expression and self-elimination of immune effector cells expressing such BCMA CAR or TCR. Physical methods for introducing polynucleotides into host cells include calcium phosphate precipitation, liposome transfection, particle bombardment, microinjection, electroporation, and the like. In some embodiments, RNA electroporation may be used (Van Driessche et al Folia histochemica et cytobiologica 43:4:213-216 (2005)). The method may further comprise preparing mRNA by in vitro transcription of the polynucleotide of the invention. In some embodiments, the invention provides methods of genetically engineering immune effector cells by transferring into the cells a polynucleotide encoding an anti-BCMA antibody or antigen binding fragment provided herein using electroporation. In some embodiments, the invention provides methods of genetically engineering immune effector cells by transferring a polynucleotide encoding a BCMA CAR or TCR provided herein into the cells using electroporation.
In some embodiments, DNA transfection and transposons may be used. In some embodiments, a sleep Beauty system or a PiggyBac system is used (e.g., ivics et al, cell,91 (4): 501-510 (1997);
Figure BDA0003670489370000751
et al (2007) Nucleic Acids research.35 (12): e 87). Chemical methods for introducing polynucleotides into host cells include colloidal dispersion systems, such as macromolecular complexes, nanocapsules, microspheres, microbeads, and lipid systemsSystems include oil-in-water emulsions, micelles, mixed micelles, and liposomes. An exemplary colloidal system for use as an in vitro and in vivo delivery vehicle is a liposome (e.g., an artificial membrane vesicle).
For example, the disclosed BCMA CAR or TCR-encoding polynucleotides can be cloned into suitable vectors and introduced into target cells using well-known molecular biology techniques (see Ausubel et al CURRENT PROTOCOLS IN MOLECULAR BIOLOGY, john Wiley and Sons, baltimore, MD (1999)). Any vector suitable for expression in a cell, in particular in a human cell, may be used. The vector contains suitable expression elements, such as promoters that provide expression of the encoding nucleic acid in the target cell.
Expression in T cells or other immune effector cells (including engineered T cells) using retroviral vectors has been described (see Scholler et al, sci. Transl. Med.4:132-153 (2012; parente-Pereira et al, J. Biol. Methods 1 (2): e7 (1-9) (2014); blood 117 (1): 72-82 (2011); revier et al, proc.Natl. Acad.Sci.USA 92:6733-6737 (1995)). In some embodiments, the vector is a gamma retroviral vector, in one embodiment, an SGF retroviral vector, e.g., SGFgamma-retroviral vector, which is a Moloney murine leukemia-based retroviral vector.SGF vector has been described previously (see, e.g., wang et al., gene Therapy 15:1454-1459 (2008)), cells can be selectively activated to increase transduction efficiency (see ParentePereira et et al., J.biol.Methods 1 (2) e7 (doi 10.14440/jbm.2014.30) (2014); movasag et al., hum.11811:2000); rev. 1200 (1998) and/v.E.10:35; see also GeneTherO6:10-1459 (1998)), and methods such as those described previously (see, e.g., wang et al., geneTherThe et al 15:1454-1459 (2008)), and methods of improving transduction efficiency (see ParentePereira et et al, J.Biol.Biol.Meter 1 (2) e.7 (2014); hui.110:2014); hu.gene-1998, yu.Gene25: TM Human T cell activator product, thermo Fisher Scientific, waltham, MA). It should be understood that any suitable viral vector or non-viral delivery system may be used. Combinations of retroviral vectors and suitable packaging cell lines, wherein capsid proteins are also suitableWill act on infected human cells. Various cell lines that produce the facultative virus (amphotropic virus) are known, including but not limited to PA12 (Miller et al, mol. Cell. Biol.5:431-437 (1985)); PA317 (Miller et al, mol.cell.biol.6:2895-2902 (1986)); and CRIP (Danos et al, proc.Natl. Acad. Sci. USA 85:6460-6464 (1988)). Non-isotropic particles are also suitable, for example, enveloped with VSVG, RD114 or GALV and any other pseudotyped particles known in the art (Relander et al, mol. Therapeutic. 11:452-459 (2005)). Possible transduction methods also include direct co-culture of cells with producer cells (e.g., bregni et al, blood 80:1418-1422 (1992)) or culture alone with viral supernatants or concentrated carrier stock (with or without appropriate growth factors or polycations) (see, e.g., xu et al, exp. Hemat.22:223-230 (1994); hughes, et al J. Clin. Invest.89:1817-1824 (1992)).
Other viral vectors that may be used include, for example, adenovirus, lentiviral and adeno-associated viral vectors, vaccinia virus, bovine papilloma virus derived vectors, or herpes viruses, such as Epstein-Barr virus (see, e.g., miller, hum. Gene Ther.1 (1): 5-14 (1990), friedman, science 244:1275-1281 (1989), eglitis et al, bioTechniques 6:608-614 (1988), tolstoshaev et al, current options. Biotechnol.1:55-61 (1990), sharp, lancet 337:1277-1278 (1991), cornetta et al, prog. Nucleic Acid Res. Mol. 36:311-322 (1989), anderson, science 226:401-409 (1984), moen, blood 17:407-416 (1991), bioTechniques 6: 608-614), tolshaev et al, current operations (1997: 1277-61 (1990), sharp, lancet 337:1277-1278 (1999), prog. Nuchemical Acid injection.36: 311-322 (1989). Retroviral vectors have evolved well and have been used clinically (Rosenberg et al, N.Engl. J. Med.323:370 (1990); anderson et al, U.S. Pat. No.5,399,346). In general, the vectors selected exhibit high infection efficiency and stable integration and expression (see, e.g., cayouete et al Human Gene Therapy 8:423-430 (1997); kido et al Current Eye Research 15:833844 (1996); bloom et al J. Virol.71:6641-6649 (1997); naldini et al Science 272:263-267 (1996); and Miyoshi et al Proc. Natl. Acad. Sci. U.S.A.94:10319-10323 (1997)).
The vectors used in the present invention are expressed in a particular host cell using a suitable promoter. The promoter may be an inducible promoter or a constitutive promoter. In some embodiments, the promoter of the expression vector provides expression in a stem cell (e.g., a hematopoietic stem cell). In some embodiments, the promoter of the expression vector provides expression in immune effector cells (e.g., T cells). Non-viral vectors may also be used, provided that the vector contains expression elements suitable for expression in the target cell. Some vectors, such as retroviral vectors, may be integrated into the host genome.
In some embodiments, the invention provides methods of genetically engineering immune effector cells by transferring a polynucleotide provided by the invention into immune effector cells using gene editing. If desired, site-directed integration can be achieved using techniques such as nucleases, transcription activator-like effector nucleases (TALENs), zinc Finger Nucleases (ZFNs), regularly clustered short palindromic repeats (CRISPRs), homologous recombination, non-homologous end joining, microhomologous mediated end joining, homologous mediated end joining, and the like (Gersbach et al, nucleic acids Res.39:7868-7878 (2011); vaselivava, et al cell Death Dis.6:e1831 (Jul 23 2015); sontheimer, hum. Gene Ther.26 (7): 413 (2015); yao et al cell Research 27:801-814 (2017)). In some embodiments, the methods provided herein use ZFN systems. Zinc finger nucleases consist of a DNA recognition domain and a non-specific endonuclease. The DNA recognition domain consists of a series of tandem Cys2-His2 zinc finger proteins, each zinc finger unit containing about 30 amino acids for specifically binding DNA. The nonspecific endonuclease is a FokI endonuclease that forms dimers to cleave DNA. In some embodiments, the methods provided herein use a TALEN system. TALENs are a type of transcriptional activator-like effector nucleases. The TALE protein is a core component of the DNA binding domain, and typically consists of a plurality of basic repeat units in tandem. The series of units designed and combined can specifically recognize a DNA sequence and cleave the specific DNA sequence by coupling a fokl endonuclease.
In some embodiments, the methods provided herein use a CRISPR-Cas system. The CRISPR-Cas system may be a CRISPR-Cas9 system. The CRISPR/Cas system is a nuclease system consisting of a regularly clustered short palindromic repeat (CRISPR) and a CRISPR binding protein (i.e., cas protein) that can cleave almost all genomic sequences adjacent to the Protospacer Adjacent Motif (PAM) in eukaryotic cells (Cong et al science 2013.339:819-823). "CRISPR/Cas system" is used to refer collectively to transcripts related to CRISPR-associated ("Cas") genes, as well as to other elements whose expression or directing their activity, including sequences encoding Cas genes, tracr (transactivated CRISPR) sequences (e.g., tracrRNA or active moiety tracrRNA), tracr mate sequences (in the context of endogenous CRISPR systems, covering "direct repeats" and processed moiety direct repeats), guide sequences, or other sequences from CRISPR sites and transcripts. In general, CRISPR systems are characterized by elements (also referred to as pre-spacers in endogenous CRISPR systems) that promote the formation of CRISPR complexes at the site of the target sequence. In general, CRISPR systems are characterized by elements (also referred to as pre-spacers in endogenous CRISPR systems) that promote the formation of CRISPR complexes at the site of the target sequence. Non-limiting examples of Cas proteins include Cas1, cas1B, cas2, cas3, cas4, cas5, cas6, cas7, cas8, cas9 (also known as Csn1 and Csx 12), cas10, csy1, csy2, csy3, cse1, cse2, csc1, csc2, csa5, csn2, csm3, csm4, csm5, csm6, cmr1, cmr3, cmr4, cmr5, cmr6, csb1, csb2, csb3, csx17, csx14, csx10, csx16, csaX, csx3, csx1, csx15, csf1, csf2, csf3, csf4 homologs, or modified versions thereof. In some embodiments, the Cas protein is a Cas9 protein (gasiuas, barrenu et al 2012; jink, chldinki et al 2012; deltcheva, chldinki et al 2011; makarova, grishin et al (2006)). The amino acid sequence of Cas9 proteins is known in the art. Example sequences can be found, for example, in the SwissProt database, accession number Q99ZW2, in the UniProt database, accession number A1IQ68, Q03LF7, or J7RUA5.
The vector and construct may alternatively be designed to include a reporter. For example, the vector may be designed to express a reporter protein that can be used to recognize cells comprising the vector or a polynucleotide provided on the vector (e.g., a polynucleotide that has been integrated into a host chromosome). In one embodiment, the reporter may be expressed with an anti-BCMA antibody or antigen binding fragment, or, BCMA CAR or TCR as a bicistronic or polycistronic construct. Exemplary reporter proteins include, but are not limited to, fluorescent proteins such as mCherry, green Fluorescent Protein (GFP), blue fluorescent proteins (e.g., EBFP2, azurite, and mKalama 1), cyan fluorescent proteins (e.g., ECFP, cerulean and CyPet), and yellow fluorescent proteins (e.g., YFP, citrine, venus and YPet).
Transduction efficiencies can be determined by testing using conventional molecular biology techniques. If a marker (e.g., fluorescent protein) is included in the construct, gene transfer efficiency can be monitored by FACS analysis to quantify the proportion of transduced (e.g., gfp+) immune effector cells (e.g., T cells), and/or by quantitative PCR. Using a mature co-culture system (gap et al, cancer Res.65:9080-9088 (2005); gong et al, neoplasia 1:123-127 (1999); latouch et al, nat. Biotechnol.18:405-409 (2000)), it was determined whether Cancer antigen-expressing fibroblast AAPCs (compared to controls) led to release of cytokines from transduced immune effector cells such as CAR-expressing T cells (IL-2, IL-4, IL-10, IFN-gamma, TNF-alpha and GM-CSF cell supernatant LUMINEX (Austin TX) assays), T cell proliferation (labeled by carboxyfluorescein succinimidyl ester (CFSE)) and T cell survival (stained by Annexin V). The effect of CD80 and/or 4-1BBL on T cell survival, proliferation and efficacy can be assessed. T cells can be exposed to repeated stimulation of cancer antigen positive target cells and it can be determined whether T cell proliferation and cytokine response remain similar or diminish with repeated stimulation. The cancer antigen CAR constructs can be compared side-by-side under equivalent assay conditions. Various E can be performed using the chromium release test: t ratio cytotoxicity assay.
Combinations and permutations of the various methods described herein or otherwise known in the art are expressly contemplated for preparing the genetically engineered cells disclosed herein.
5.8.2.2 manipulation of immune effector cells
The immune effector cells provided by the invention can be obtained from a subject. The immune effector cell sources provided by the present invention include, but are not limited to, hematopoietic cells of peripheral blood, umbilical cord blood, bone marrow, or other sources. Immune effector cells (e.g., T cells) may be obtained from a number of sources, including peripheral blood mononuclear cells, bone marrow, lymph node tissue, cord blood, thymus tissue, tissue at the site of infection, ascites, pleural effusion, spleen tissue, and tumors. In certain embodiments, cell lines useful in the art may be used. Immune effector cells provided by the present invention may be isolated by methods well known in the art, including commercially available isolation methods (see, e.g., rowland Jones et al, LYMPHOCYTES: A PRACTICAL APPROACH, oxford University Press, new York (1999)). Various methods for isolating immune effector cells have been previously described and can be used including, but not limited to, the use of peripheral donor lymphocytes (Sadelain et al, nat. Rev. Cancer 3:35-45 (2003); morgan et al, science 314:126-129 (2006)), and the selective use of antigen-specific peripheral Blood lymphocytes that are expanded in vitro using Artificial Antigen Presenting Cells (AAPCs) or dendritic cells (Dupont et al, cancer Res.65:5417-5427 (2005); papanicolaou et al 102, blood: 2498-2505 (2003)).
In certain embodiments, the presently disclosed immune effector cells (e.g., T cells) can be obtained using any technique known to those skilled in the art (e.g., ficoll TM Isolation) is obtained from blood units collected from the subject. In some embodiments, cells from the circulating blood of the individual are obtained by apheresis. The apheresis product typically contains lymphocytes, including T cells, monocytes, granulocytes, B cells, other nucleated leukocytes, erythrocytes, and platelets. In some embodiments, cells collected by apheresis may be washed to remove plasma fractions and the cells placed in an appropriate buffer or medium for subsequent processing steps. In some embodiments, the cells are washed with Phosphate Buffered Saline (PBS). In another embodiment, the wash solution lacks calcium,and may lack magnesium or may lack many, if not all, divalent cations. In the absence of calcium, the initial activation step results in amplification activation. As will be readily appreciated by those of ordinary skill in the art, the washing step may be accomplished by methods known to those of ordinary skill in the art, such as using a semi-automated "flow-through" centrifuge (e.g., cobe 2991 cell processor, baxter CytoMate, or autologous blood recovery machine 5) according to manufacturer's instructions. After washing, the cells can be resuspended in various biocompatible buffers, e.g., ca-free 2+ No Mg 2+ Is described herein as PBS, bowmember A (PlasmaLyte A), or other physiological saline solution with or without a buffer. Alternatively, the unwanted components of the apheresis sample may be removed and the cells resuspended directly in culture medium.
In another embodiment, the method is performed by lysing erythrocytes and depleting monocytes (e.g., by Percoll TM Gradient centrifugation or countercurrent centrifugation elution) to separate T cells from peripheral blood lymphocytes. A specific subset of T cells, such as CD3 + ,CD28 + ,CD4 + ,CD8 + ,CD45RA + And CD45RO + T cells can be further isolated by positive or negative selection techniques. For example, in one embodiment, the conjugate is formed by coupling microbeads (e.g., 3X 28)
Figure BDA0003670489370000791
M-450CD3/CD 28T) for a sufficient period of time for positive selection of the desired T cells. In one embodiment, the period of time is about 30 minutes. In another embodiment, the period of time ranges from 30 minutes to 36 hours or more, and all integer values included therebetween. In another embodiment, the period of time is at least 1, 2, 3, 4, 5, or 6 hours. In yet another preferred embodiment, the period of time is from 10 to 24 hours. In a preferred embodiment, the incubation period is 24 hours. For T cell isolation in leukemia patients, using longer incubation times (e.g., 24 hours) can increase cell yield. In any case where there are fewer T cells than other cell types Longer incubation times may be used to isolate T cells, such as Tumor Infiltrating Lymphocytes (TILs) from tumor tissue or immunocompromised individuals. In addition, the use of longer incubation times may increase the efficiency of cd8+ T cell capture. Thus, by simply shortening or extending the time for T cells to bind to CD3/CD28 microbeads and/or by increasing or decreasing the ratio of microbeads to T cells (as further described herein), T cell subsets can be preferentially selected or eliminated at the beginning of culture or at other points in the process. In addition, by increasing or decreasing the proportion of anti-CD 3 and/or anti-CD 28 antibodies on the microbeads or other surface, T cell subsets can be preferentially selected or eliminated at the beginning of culture or at other desired points in time. Those skilled in the art will recognize that multiple rounds of selection may also be used in the context of the present invention.
Various techniques can be used to isolate cells to enrich for desired immune effector cells. For example, negative selection methods can be used to remove cells that are not desired immune effector cells. In addition, positive selection methods may be used to isolate or enrich for desired immune effector cells or their precursors, or a combination of positive and negative selection methods may be used. Monoclonal antibodies (MAbs) are particularly useful for identifying markers associated with specific cell lineages and/or differentiation stages associated with positive and negative selections. If a particular type of CELL, e.g., a particular type of T CELL, is to be isolated, various CELL surface markers or combinations of markers can be used to isolate the CELL, including but not limited to CD3, CD4, CD8, CD34 (for hematopoietic stem/progenitor CELLs), etc., as is well known in the art (see, kearse, T CELL PROTOCOLS: DEVELOPMENT AND ACTIVATION, huma Press, totowa NJ (2000); de Libero, T CELL PROTOCOLS, vol.514of Methods in Molecular Biology, huma Press, totowa NJ (2009)). In some embodiments, enrichment of T cell populations by negative selection may be accomplished with antibody binding to a surface marker specific for the negative selection cells. One approach is cell sorting and/or selection by negative magnetic immunoadhesion or flow cytometry using a monoclonal antibody cocktail directed against cell surface markers present on negative selection cells And (3) a compound. For example, to enrich for CD4 by negative selection + The cell, monoclonal antibody mixture typically includes CD14, CD20, CD11b, CD16, HLA-DR, and CD8 antibodies. In certain embodiments, it may be desirable to enrich or positively select for regulatory T cells that normally express cd4+, cd25+, cd62Lhi, gitr+ and foxp3+. Alternatively, in certain embodiments, T regulatory cells are eliminated by anti-C25 coupled microbeads or other similar selection methods.
Isolation procedures for immune effector cells include, but are not limited to, density gradient centrifugation, coupling particles that modify cell density, magnetic separation with antibody-coated magnetic beads, affinity chromatography; cytotoxic agents used in conjunction or coupling with monoclonal antibodies (mabs) include, but are not limited to, complement and cytotoxins, as well as antibody panning attached to a solid substrate, such as a plate or chip, elution, flow cytometry, or any other convenient technique (see, e.g., recktenwald et al, CELL SEPARATION METHODS AND APPLICATIONS, marcel Dekker, inc., new York (1998)). It will be appreciated that the immune effector cells used in the methods provided herein may be substantially pure cells or may be polyclonal populations. In some embodiments, the polyclonal population can be enriched for desired immune effector cells. Such enrichment can be performed before or after the cells are genetically engineered to express the BCMA CAR or TCR provided by the invention, as desired.
The immune effector cells may be autologous or non-autologous to the subject to whom they are administered according to the disclosed methods of treatment. Autologous cells are isolated from the subject to whom the engineered cells have been administered. Alternatively, cells may be obtained by apheresis, wherein leukocytes are selectively removed from the extracted blood, made into recombinants, and then reinfused into the donor. Alternatively, allogeneic cells from a non-autologous donor that is not the subject may be used. In the case of non-autologous donors, cells are typed and matched to Human Leukocyte Antigens (HLA) to determine appropriate levels of compatibility, as is well known in the art. Cells may optionally be cryopreserved after isolation and/or genetic engineering and/or cell expansion after genetic engineering (see Kaiser et al, supra, 2015)). Methods OF cryopreserving cells are well known in the art (see, e.g., freshney, CULTURE OF ANIMAL CELLS: A MANUAL OF BASIC TECHNIQUES,4th ed., wiley-Lists, new York (2000); harrison and Rae, GENERAL TECHNIQUES OF CELL CULTURE, cambridge University Press (1997)).
In some embodiments, the isolated immune effector cells are genetically engineered in vitro for recombinant expression of a polypeptide (e.g., CAR or TCR). In some embodiments, the isolated immune effector cells are genetically engineered in vitro for recombinant expression of BCMA CARs or TCRs. In some embodiments, the immune effector cells provided herein are obtained by in vitro sensitization (sensitization), wherein the sensitization may occur before or after the immune effector cells are genetically engineered to recombinantly express the polypeptides disclosed herein. In one embodiment, sensitized immune effector cells (e.g., T cells) are isolated from an in vivo source, and it will be self-evident that sensitized immune effector cells have been genetically engineered.
It is also contemplated in the present invention to collect a blood sample or a apheresis product from a subject for a period of time prior to the time that genetically engineered cells as described herein may be required. Thus, the source of cells to be expanded can be collected at any necessary point in time and the desired cells (e.g., T cells) isolated and frozen for later use in T cell therapy for any number of diseases or conditions (e.g., those described herein) that would benefit from T cell therapy. In one embodiment, the blood sample or single is taken from a generally healthy subject. In certain embodiments, a blood sample or single sample is taken from a generally healthy subject at risk of developing but not yet developing, and the desired cells are isolated and frozen for later use. In certain embodiments, the T cells may be expanded, frozen, and used at a later time. In certain embodiments, samples are collected from the patient shortly after diagnosis of a particular disease as described herein, but prior to any treatment. In another embodiment, cells are isolated from a blood sample or single sample of a subject prior to employing any number of relevant therapeutic regimens including, but not limited to, treatment with a drug (e.g., natalizumab, efalizumab, antiviral), chemotherapy, radiation therapy, immunosuppressants (e.g., cyclosporine, azathioprine, methotrexate, mycophenolic acid, and FK 506), antibodies or other immunosuppressants (e.g., CAMPATH, anti-CD 3 antibodies, cyclophosphamide, fludarabine, cyclosporine, FK506, rapamycin, mycophenolic acid, steroids, FR 901228), and irradiation. These drugs inhibit the calcium-dependent phosphatase calcineurin (cyclosporin and FK 506) or inhibit p70S6 kinase (rapamycin) important for growth factor-induced signaling (Liu et al, cell 66:807-815,1991;Henderson et al, immun 73:316-321,1991;Bierer et al, curr. Opin. Immun.5:763-773, 1993). In further embodiments, cells are isolated and frozen for subsequent use in conjunction with bone marrow transplantation or stem cell transplantation (e.g., prior to, concurrent with, or subsequent to transplantation), T cell ablation therapy using a chemotherapeutic agent (e.g., fludarabine), external electron beam radiation therapy (XRT), cyclophosphamide, or an antibody (e.g., OKT3 or CAMPATH). In another embodiment, the cells are isolated prior to B cell ablation therapy and may be frozen for later use in a later therapy, such as a drug that reacts to CD20 (e.g., rituxan).
In a further embodiment, T cells are obtained directly from the patient after treatment. In this regard, it has been observed that after certain cancer treatments, particularly treatments with drugs that damage the immune system, patients often recover from the treatment shortly after the treatment, and the quality of the T cells obtained may be optimized or improved due to their ability to expand in vitro. Likewise, after in vitro manipulations using the methods described herein, these cells may be in a preferred state for enhanced transplantation and in vivo expansion. Thus, it is contemplated that blood cells, including T cells, NK cells, or other immune effector cells of the hematopoietic lineage, are collected during this recovery phase. Furthermore, in certain embodiments, mobilization (e.g., mobilization with GM-CSF) and pretreatment protocols can be used to create conditions in a subject that favor the re-proliferation, recycling, regeneration, and/or expansion of a particular cell type, particularly during a defined time window after treatment. Exemplary cell types include T cells, B cells, dendritic cells, and other cells of the immune system.
The immune effector cells disclosed herein may be subjected to conditions well known in the art that facilitate cell maintenance or expansion. (De Liberto, T Cell Protocols, vol.514 of Methods in Molecular Biology, humana Press, totowa N.J. (2009); parente-Pereira et al, J.biol.methods 1 (2) e7 (doi 10.14440/jbm.2014.30) (2014); movasmagh et al, hum.Gene Ther.11:11891200 (2000); rettig et al, mol.Ther.8:29-41 (2003); agarwal et al, J.Virol.72:3720-3728 (1998); polok et al, hum.Gene Ther.10:2221-2236 (1999); quinn et al, hum.Gene Ther.9:1457-1467 (1998)), and other commercially available methods, such as Dynab TM human T Cell activator products, thermo Fisher Scientific, waltham, MA). The immune effector cells (e.g., T cells) disclosed herein can optionally be expanded before or after in vitro genetic engineering. Expansion of cells is particularly useful for increasing the number of cells in a subject for administration. Such methods for cell expansion are well known in the art (see, e.g., kaiser et al, cancer Gene Therapy 22:72-78 (2015); wolfl et al, nat. Protocols 9:950-966 (2014)). In addition, the cells may optionally be cryopreserved after isolation and/or genetic engineering and/or expansion of the genetically engineered cells (see Kaiser et al, supra, 2015)). Methods for cryopreserving cells are well known in the art (see, e.g., freshney, CULTURE OF ANIMAL CELLS: A MANUAL OF BASIC TECHNIQUES,4th ed., wiley-Lists, new York (2000); harrison and Rae, GENERAL TECHNIQUES OF CELL CULTURE, cambridge University Press (1997)).
In general, T cells provided by the invention can be expanded by contact with a surface to which are attached reagents that stimulate a CD3/TCR complex-associated signal and ligands that stimulate co-stimulatory receptors on the surface of the T cells. In particular, the T cell population may be stimulated as described herein, for example by contacting with an anti-CD 3 antibody or antigen binding fragment thereof, or an anti-CD 2 antibody immobilized on a surface, or by contacting with a protein kinase C activator (e.g., bryostatin) that binds to a calcium ionophore. To co-stimulate the helper molecule on the surface of the T cell, a ligand that binds to the helper molecule is used. For example, a population of T cells may be contacted with an anti-CD 3 antibody and an anti-CD 28 antibody under conditions suitable to stimulate T cell proliferation. To stimulate proliferation of cd4+ T cells or cd8+ T cells, anti-CD 3 antibodies and anti-CD 28 antibodies. Examples of anti-CD 28 antibodies include 9.3, B-T3, XR-CD28 (diacetone, besancon, france), other methods common in the art can also be used (Berg et al, transplant Proc.30 (8): 39753977,1998;Haanen et al, J.exp. Med.190 (9): 13191328,1999;Garland et al, J.Immunol Meth.227 (1-2): 53-63,1999).
The invention is described herein in a number of embodiments using certain language. The invention also specifically includes embodiments that exclude particular subject-matter, such as matters or materials, method steps and conditions, protocols, procedures, assays or analyses, entirely or in part. Thus, even though the invention is not generally expressed in terms of what the invention does not include, aspects not explicitly included in the invention are still disclosed in the invention.
Specific embodiments of the invention are described herein, including the best mode known to the inventors for carrying out the invention. Variations of those disclosed embodiments may become apparent to those of ordinary skill in the art upon reading the foregoing description, and it is contemplated that such variations may be suitably employed by those of ordinary skill in the art. Accordingly, this invention is intended to be practiced otherwise than as specifically described and this invention includes all modifications and equivalents of the subject matter recited in the claims appended hereto as permitted by applicable law. Furthermore, any combination of the above-described elements in all possible variations thereof is encompassed by the invention unless otherwise indicated herein or otherwise clearly contradicted by context.
All publications, patent applications, accession numbers, and other references cited in this specification are herein incorporated by reference in their entirety to the same extent as if each individual publication or patent application was specifically and individually indicated to be incorporated by reference. The publications discussed herein are provided solely for their disclosure prior to the filing date of the present application. Citation or identification of any reference in the description of some embodiments of the invention shall not be construed as an admission that such reference is available as prior art to the present invention. Further, the dates of publication provided may be different from the actual publication dates, which may need to be independently confirmed.
Various embodiments of the present invention have been described. Nevertheless, it will be understood that various modifications may be made without departing from the spirit and scope of the invention. Accordingly, the description in the experiments is intended to illustrate but not limit the scope of the invention as described in the claims.
5.9 experiment
Twelve novel anti-BCMA scFv were generated and characterized as described below. T cells expressing CARs comprising these BCMA scFv were also generated and characterized. Cytotoxicity of these BCMA CART against BCMA expressing tumors was demonstrated.
5.9.1 materials and methods
Primary human lymphocytes. Primary human cd4+ T cells and cd8+ T cells were isolated from healthy volunteers. T cells were stimulated with anti-CD 3/CD28 Dynabeads magnetic beads (Life Technologies, grand Island, N.Y.) and cultured in R10 medium supplemented with 100IU/mL IL-2 (10% fetal bovine serum, 1% HEPES, 1% GuthaMAX, 1% penicillin and streptomycin, 1% MEM NEAA and 1% sodium pyruvate in RPMI-1640 medium).
Cell lines. The following cell lines were cultured in R10 medium and used for the relevant experiments: nalm6 (human leukemia cells), jeko1 (human lymphoma cells), RPMI-8226 (human myeloma cells), raji (human lymphoma cells), THP1 (human leukemia cells), HCC70 (human breast cancer cells), 786-O (human renal cell carcinoma cells), SH-SY5Y (human neuroblastoma cells), A549ESO (human lung cancer cells), SKOV3 (human ovarian cancer cells), PC3 (human prostate cancer cells), H226 (human lung cancer cells), ASPC1 (human pancreatic tumor cells), caski (human cervical cancer cells) and K562 (human leukemia cells).
Lentivirus production and transduction. Lentiviral vectors were generated from HEK293T cells transformed with transfer and packaging plasmids pRSV.REV, pMD2.G and pMDLg.pRREAnd (5) dyeing. Lentiviral vectors were harvested 24 and 48 hours later and concentrated by ultracentrifugation.
T cells (CD 4: cd8=1:1) were stimulated on day 0 by CD3/CD28 Dynabead magnetic beads. Lentiviruses were added to the medium on day 1. Cells were fed daily or every two days with R10 medium containing 100IU/ml IL-2.
BCMA31.BBz and LACO mRNA production. In vitro transcription of mRNA was performed using Ambion mMessage mMACHINE T Ultra kit (Life Technologies, carlsbad, calif.).
Electroporation of BCMA31.BBz and LACO mRNA. mRNA was added to 0.1ml T cells (1×)
10 8 Individual cells/ml), the T cells were washed twice and resuspended with OPTI-MEM. Electroporation was performed in a 0.2cm cuvette using BTX830 (Harvard Apparatus BTX) at 500V and 0.7 ms.
Tumor killing assays using an intucyte real-time cell analyzer. Tumor cells and T cells were washed twice with R10 medium and then resuspended in R10 medium. Tumor cells and car+ T cells were both seeded in 96-well plates at a concentration of 10000 cells/well. The total cumulative intensity was recorded every 4 hours.
ELISA.10 ten thousand CAR-T cells and 10 ten thousand tumor cells were co-cultured at 37℃for 24 hours, and then the supernatant was collected and assayed according to ELISA kit (R&D Systems) to measure secretion levels of IL-2 and ifnγ.
CD107a test. CAR-T cells and tumor cells were mixed in a 1:2 ratio. CD107 antibody was added to the medium. After 1 hour of co-cultivation, golgi stop solution was added. After 3 hours, cells were stained with CD3-BV421 and CD8-APC antibodies and analyzed by flow cytometry.
Preparation of 5.9.2 anti-BCMA antibodies
An anti-BCMA antibody was prepared using a fully human antibody phage display library according to the following procedure:
(1) Expression and purification of phage display libraries: infection of log-phase TG1 library cultures with freshly thawed M13K07 helper phage at a multiple infection rate of 20:1 (phage to cell ratio) and induction with IPTG overnight; phage libraries were purified by PEG/NaCl precipitation and phage titers were determined. Phage were stored at 4℃and later subjected to scFv selection.
(2) Selection of BCMA-specific scFv-phages: in the first round of selection, 20. Mu.g/ml BCMA-6His protein dissolved in 1 XPBS was coated on Maxisorp plates and incubated overnight at 4 ℃. (in the subsequent rounds of selection, lower protein concentrations were used for more stringent selection, including 2. Mu.g/ml in the second round of biological screening, 0.5. Mu.g/ml in the third round of biological screening.) and then after washing the plates three times with PBS, blocking buffer (5% milk and 1% BSA in 1 XPBS) was added to each well. After incubation for 2 hours at room temperature, the blocking buffer was discarded, phage solution was added, the plate was sealed with preservative film and incubated for 2 hours with gentle shaking. In the first round of selection, plates were then washed 10 times with PBST. (in the next few rounds, the stringency of the wash is increased by adding more wash cycles: 20 wash cycles for the second round and 30 wash cycles for the third round). Antigen-binding scFv-phage were then eluted using 1mL of acid wash buffer (pH 2.2), neutralized, inoculated into 15mL of log-phase TG1 culture (od600=0.5), left to stand at 37 ℃ for 30min and shake for 30min, inoculated onto 2xYT-GA agar plates, and incubated overnight at 30 ℃ for subsequent selection.
(3) mpELISA screening: after three rounds of screening, 480 phage-infected colony clones were selected for monoclonal phage ELISA (mpELISA) screening. Phage supernatants were generated from individual colony clones and tested for binding to BCMA-Fc protein. The supernatant was incubated with pre-blocked Maxisorp plates coated with 2. Mu.g/ml BCMA-6His protein. After three washes, 100 μl/well of HRP conjugated anti-M13 antibody was added, which was subjected to 1: diluted 5000 and then incubated at room temperature for 60min. After washing the plates 5 times with PBST, 100. Mu.l/well TMB matrix solution was added and incubated for 10-30 minutes until blue color appeared. The reaction was stopped by adding 50. Mu.l/well of stop solution (2N H2SO 4). In the microplate reader, the absorbance was read at 450 nm. Table 4 below provides three representative anti-human BCMA-Fc monoclonal phage ELISA 96-well plate readings. Clones with grey highlights were positive clones. In phage ELISA assays, 36 positive clones were selected in total, scFv fragments were amplified by PCR and sequenced.
Table 4: flat plate-1
Figure BDA0003670489370000861
Panel-2
Figure BDA0003670489370000862
Panel-3
Figure BDA0003670489370000863
(4) Cloning and sequence analysis: positive clones were selected according to ELISA results and used as templates for PCR cloning of scFv sequences (forward primer sequence: tgcagctggcacgacaggtttc, reverse primer sequence: cgtcagactgtagcacgtt). The PCR product was then sequenced by the sanger sequencing method (forward primer sequence: aacaattgaattcaggagga, reverse primer sequence: cctcctaagaagcgtagtc). CDR regions of scFv were analyzed by the abysis website (http:// abysis. Org /), see tables 1 and 2 above.
(5) Screening of functional anti-BCMA scFv in T cells: the anti-BCMA scFv was constructed into a bicistronic lentiviral CAR expression vector containing an IRES truncated EGFR (tgfr) expression cassette. Lentiviruses were produced by transient transfection of 293T cells, followed by purification and concentration by ultracentrifugation. T cells were transduced with CAR lentiviruses to generate CAR-T cells, and then cultured for an additional 10 days. 10 days after lentiviral transduction, CAR-T cells were collected and stained with 5 μg/ml CD19-Fc protein (Ctrl Fc protein) or BCMA-Fc recombinant protein at 4℃for 30 min. After washing, CAR-T cells were stained with anti-human IgG Fc and anti-EGFR mAb. The samples were analyzed using a flow cytometer. As shown, T cells expressing CAR (containing the following anti-BCMA scFv) showed binding to BCMA-Fc (fig. 1B) and were selected for further study: BCMA21, BCMA22, BCMA23, BCMA24, BCMA27, BCMA28, BCMA30, BCMA31, BCMA32, BCMA33, BCMA34, and BCMA35.
Preparation and characterization of 5.9.3BCMA-CART
We constructed 12 different anti-BCMA CARs using the anti-BCMA scFv described above. 3 other CART products were tested in parallel, including NBC10 (Novartis AG and University of Pennsylvania, BMCA10. BBz) (SEQ ID NO: 129), FHVH33 (National Institutes of Health, US) (SEQ ID NO: 128), and B38M (Nanjing legend biosciences) (SEQ ID NO: 130). All CARs tested had 41BBz coactivator domains.
Table 5: BCMA CART, CAR% and expression level
CART scFv CAR% MFI
1 NBC10 22% 1.2E+05
2 FHVH33 84% 3.2E+05
3 BCMA21 31% 1.6E+05
4 BCMA22 12% 7.5E+04
5 BCMA23 18% 2.2E+05
6 BCMA24 23% 9.4E+04
7 BCMA27 27% 1.7E+05
8 BCMA28 29% 6.5E+04
9 BCMA30 25% 4.6E+04
10 BCMA31 37% 2.5E+05
11 BCMA32 19% 5.6E+04
12 BCMA33 27% 2.6E+05
13 BCMA34 16% 9.5E+04
14 BCMA35 18% 1.1E+05
15 B38M 51% 5.8E+05
16 NTD
T cells were transduced by lentiviral vectors to express different BCMA CARs. Table 5 above shows the CART cells, the percentage of CAR expressing cells and their respective expression levels used in the studies disclosed herein. Figures 2A and 2B show the frequency of car+ T cells and their expression levels ("MFI" is the mean fluorescence intensity), respectively. Of the 12 scFvs produced in the present invention, BCMA31 (# 10; SEQ ID NO: 123) and BCMA33 (# 12) were expressed at higher levels than the other scFvs. Figure 3 shows comparable frequencies of car+cd8 cells in test CART (comparable frequencies). FIG. 4 shows the phenotype of CART cells. The frequency of naive T-cell populations (CD 45RO-; CCR7+) in BCMA27 (# 7), BCMA31 (# 10), and BCMA33 (# 12) T-cells was higher than in the other samples, indicating that these T-cells differentiated to a lesser extent.
Expression of 5.9.4BCMA in tumor cells
BCMA expression was detected for different tumor cell lines by FACS staining (fig. 5A) and RT-PCR (fig. 5B), as shown in fig. 5A and 5B. BCMA expression was detected in Jeko-1 (low level), raji (medium level) and RPMI-8226 cells (high level) by FACS staining. Although BCMA expression in Nalm6 was not detected by FACS, RT-PCR analysis showed BCMA expression in Nalm6, although the expression level was low.
5.9.5BCMA CART has cytotoxicity to tumor cells
The CART cells were co-cultured with Jeko-1 cells and RPMI-8226 tumor cells. INF-gamma and IL-2 production was detected. As shown in FIGS. 6A (INF-gamma) and 6B (IL-2), of the 12 CARTs produced by the present invention, BCMA23 (# 5), BCMA24 (# 6), BCMA27 (# 7), BCMA31 (# 10; SEQ ID NO: 138) and BCMA33 (# 12) were able to produce more cytokines than other CART cells (including NBC10 and B38M CAR T cells).
We also examined the cytolytic activity of CART cells on Jeko-1 (FIGS. 7A-7D) and RPMI-8226 cells (FIGS. 8A-8E), respectively. BCMA23 (# 5), BCMA24 (# 6), BCMA31 (# 10; SEQ ID NO: 138) and BCMA33 (# 12) CART cells exhibit different degrees of cytotoxicity to Jeko-1 cells, with BCMA31 (# 10) having the highest cytotoxicity, effectively eliminating Jeko-1. In addition, BCMA21 (# 3), BCMA22 (# 4), BCMA23 (# 5), BCMA24 (# 6), BCMA27 (# 7), BCMA31 (# 10), BCMA33 (# 12), BCMA4 (# 13), and BCMA35 (# 14) exhibit different levels of cytotoxicity to RPMI-8226 cells, with BCMA21 (# 3), BCMA23 (# 5), BCMA24 (# 6), BCMA27 (# 7), BCMA31 (# 10), and BCMA33 (# 12) effectively eliminating RPMI-8226 cells.
6. Electronically submitted sequence list references
The present application incorporates by reference the sequence listing of ASCII text file "313 a006cn02_st25" of size 27,861 bytes created with the present application at 2022, 5, 19.
SEQUENCE LISTING
<110> Shanghai Uteji biological medicine Co., ltd
<120> BCMA targeting antibodies, chimeric antigen receptors and uses thereof
<130> 613A006CN02
<150> PCT/CN2021/112798
<151> 2021-08-16
<150> CN 202180005555.3
<151> 2022-03-25
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Gln Ala Glu Asp Glu Ala Asp Tyr Tyr Cys Ser Ser Tyr Gly Gly Ser
85 90 95
Asn Asn Leu Val Phe Gly Gly Gly Thr Lys Val Thr Val Leu Gly Gly
100 105 110
Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Glu Val Gln
115 120 125
Leu Val Glu Ser Gly Gly Gly Leu Ile Gln Pro Gly Gly Ser Leu Arg
130 135 140
Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe Ser Ser Tyr Trp Met Ser
145 150 155 160
Trp Val Arg Gln Ser Pro Gly Lys Gly Leu Glu Trp Val Ala Asn Ile
165 170 175
Lys Pro Asp Gly Ser Asp Lys Tyr Tyr Val Asp Ser Val Lys Gly Arg
180 185 190
Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn Ser Leu Asp Leu Gln Met
195 200 205
Asn Ser Leu Arg Gly Glu Asp Thr Ala Ile Tyr Tyr Cys Ala Arg Gly
210 215 220
Ala Thr Thr Tyr Gly Ser Trp Gly Gln Gly Thr Leu Val Thr Val Ser
225 230 235 240
Ser
<210> 128
<211> 142
<212> PRT
<213> artificial sequence
<220>
<223> FHVH33
<400> 128
Met Ala Leu Pro Val Thr Ala Leu Leu Leu Pro Leu Ala Leu Leu Leu
1 5 10 15
His Ala Ala Arg Pro Glu Val Gln Leu Leu Glu Ser Gly Gly Gly Leu
20 25 30
Val Gln Pro Gly Gly Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe
35 40 45
Thr Phe Ser Ser Tyr Ala Met Ser Trp Val Arg Gln Ala Pro Gly Lys
50 55 60
Gly Leu Glu Trp Val Ser Ser Ile Ser Gly Ser Gly Asp Tyr Ile Tyr
65 70 75 80
Tyr Ala Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Ile Ser
85 90 95
Lys Asn Thr Leu Tyr Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr
100 105 110
Ala Val Tyr Tyr Cys Ala Lys Glu Gly Thr Gly Ala Asn Ser Ser Leu
115 120 125
Ala Asp Tyr Arg Gly Gln Gly Thr Leu Val Thr Val Ser Ser
130 135 140
<210> 129
<211> 260
<212> PRT
<213> artificial sequence
<220>
<223> NBC10 scFv
<400> 129
Met Ala Leu Pro Val Thr Ala Leu Leu Leu Pro Leu Ala Leu Leu Leu
1 5 10 15
His Ala Ala Arg Pro Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu
20 25 30
Val Gln Pro Gly Gly Ser Leu Arg Leu Ser Cys Ala Val Ser Gly Phe
35 40 45
Ala Leu Ser Asn His Gly Met Ser Trp Val Arg Arg Ala Pro Gly Lys
50 55 60
Gly Leu Glu Trp Val Ser Gly Ile Val Tyr Ser Gly Ser Thr Tyr Tyr
65 70 75 80
Ala Ala Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Arg
85 90 95
Asn Thr Leu Tyr Leu Gln Met Asn Ser Leu Arg Pro Glu Asp Thr Ala
100 105 110
Ile Tyr Tyr Cys Ser Ala His Gly Gly Glu Ser Asp Val Trp Gly Gln
115 120 125
Gly Thr Thr Val Thr Val Ser Ser Ala Ser Gly Gly Gly Gly Ser Gly
130 135 140
Gly Arg Ala Ser Gly Gly Gly Gly Ser Asp Ile Gln Leu Thr Gln Ser
145 150 155 160
Pro Ser Ser Leu Ser Ala Ser Val Gly Asp Arg Val Thr Ile Thr Cys
165 170 175
Arg Ala Ser Gln Ser Ile Ser Ser Tyr Leu Asn Trp Tyr Gln Gln Lys
180 185 190
Pro Gly Lys Ala Pro Lys Leu Leu Ile Tyr Ala Ala Ser Ser Leu Gln
195 200 205
Ser Gly Val Pro Ser Arg Phe Ser Gly Ser Gly Ser Gly Thr Asp Phe
210 215 220
Thr Leu Thr Ile Ser Ser Leu Gln Pro Glu Asp Phe Ala Thr Tyr Tyr
225 230 235 240
Cys Gln Gln Ser Tyr Ser Thr Pro Tyr Thr Phe Gly Gln Gly Thr Lys
245 250 255
Val Glu Ile Lys
260
<210> 130
<211> 244
<212> PRT
<213> artificial sequence
<220>
<223> B38M scFv
<400> 130
Gln Val Lys Leu Glu Glu Ser Gly Gly Gly Leu Val Gln Ala Gly Arg
1 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Glu His Thr Phe Ser Ser His
20 25 30
Val Met Gly Trp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Ser Val
35 40 45
Ala Val Ile Gly Trp Arg Asp Ile Ser Thr Ser Tyr Ala Asp Ser Val
50 55 60
Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Lys Thr Leu Tyr
65 70 75 80
Leu Gln Met Asn Ser Leu Lys Pro Glu Asp Thr Ala Val Tyr Tyr Cys
85 90 95
Ala Ala Arg Arg Ile Asp Ala Ala Asp Phe Asp Ser Trp Gly Gln Gly
100 105 110
Thr Gln Val Thr Val Ser Ser Gly Gly Gly Gly Ser Glu Val Gln Leu
115 120 125
Val Glu Ser Gly Gly Gly Leu Val Gln Ala Gly Gly Ser Leu Arg Leu
130 135 140
Ser Cys Ala Ala Ser Gly Arg Thr Phe Thr Met Gly Trp Phe Arg Gln
145 150 155 160
Ala Pro Gly Lys Glu Arg Glu Phe Val Ala Ala Ile Ser Leu Ser Pro
165 170 175
Thr Leu Ala Tyr Tyr Ala Glu Ser Val Lys Gly Arg Phe Thr Ile Ser
180 185 190
Arg Asp Asn Ala Lys Asn Thr Val Val Leu Gln Met Asn Ser Leu Lys
195 200 205
Pro Glu Asp Thr Ala Leu Tyr Tyr Cys Ala Ala Asp Arg Lys Ser Val
210 215 220
Met Ser Ile Arg Pro Asp Tyr Trp Gly Gln Gly Thr Gln Val Thr Val
225 230 235 240
Ser Ser Thr Ser
<210> 138
<211> 486
<212> PRT
<213> artificial sequence
<220>
<223> BCMA31.BBZ
<400> 138
Met Leu Leu Leu Val Thr Ser Leu Leu Leu Cys Glu Leu Pro His Pro
1 5 10 15
Ala Phe Leu Leu Ile Pro Gln Ser Ala Leu Thr Gln Pro Pro Ser Ala
20 25 30
Ser Gly Ser Pro Gly Gln Ser Val Thr Ile Ser Cys Thr Gly Thr Ser
35 40 45
Ser Asp Val Gly Thr Tyr Asn Tyr Val Ser Trp Tyr Gln Gln His Pro
50 55 60
Gly Lys Ala Pro Lys Leu Met Ile Tyr Asp Val Asn Gln Arg Pro Ser
65 70 75 80
Gly Val Pro Asp Arg Phe Ser Gly Ser Lys Ser Gly Asn Thr Ala Ser
85 90 95
Leu Thr Val Ser Gly Leu Gln Ala Glu Asp Glu Ala Asp Tyr Tyr Cys
100 105 110
Ser Ser Tyr Gly Gly Ser Asn Asn Leu Val Phe Gly Gly Gly Thr Lys
115 120 125
Val Thr Val Leu Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly
130 135 140
Gly Gly Ser Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Ile Gln
145 150 155 160
Pro Gly Gly Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Phe
165 170 175
Ser Ser Tyr Trp Met Ser Trp Val Arg Gln Ser Pro Gly Lys Gly Leu
180 185 190
Glu Trp Val Ala Asn Ile Lys Pro Asp Gly Ser Asp Lys Tyr Tyr Val
195 200 205
Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ala Lys Asn
210 215 220
Ser Leu Asp Leu Gln Met Asn Ser Leu Arg Gly Glu Asp Thr Ala Ile
225 230 235 240
Tyr Tyr Cys Ala Arg Gly Ala Thr Thr Tyr Gly Ser Trp Gly Gln Gly
245 250 255
Thr Leu Val Thr Val Ser Ser Thr Thr Thr Pro Ala Pro Arg Pro Pro
260 265 270
Thr Pro Ala Pro Thr Ile Ala Ser Gln Pro Leu Ser Leu Arg Pro Glu
275 280 285
Ala Cys Arg Pro Ala Ala Gly Gly Ala Val His Thr Arg Gly Leu Asp
290 295 300
Phe Ala Cys Asp Ile Tyr Ile Trp Ala Pro Leu Ala Gly Thr Cys Gly
305 310 315 320
Val Leu Leu Leu Ser Leu Val Ile Thr Leu Tyr Cys Lys Arg Gly Arg
325 330 335
Lys Lys Leu Leu Tyr Ile Phe Lys Gln Pro Phe Met Arg Pro Val Gln
340 345 350
Thr Thr Gln Glu Glu Asp Gly Cys Ser Cys Arg Phe Pro Glu Glu Glu
355 360 365
Glu Gly Gly Cys Glu Leu Arg Val Lys Phe Ser Arg Ser Ala Asp Ala
370 375 380
Pro Ala Tyr Gln Gln Gly Gln Asn Gln Leu Tyr Asn Glu Leu Asn Leu
385 390 395 400
Gly Arg Arg Glu Glu Tyr Asp Val Leu Asp Lys Arg Arg Gly Arg Asp
405 410 415
Pro Glu Met Gly Gly Lys Pro Arg Arg Lys Asn Pro Gln Glu Gly Leu
420 425 430
Tyr Asn Glu Leu Gln Lys Asp Lys Met Ala Glu Ala Tyr Ser Glu Ile
435 440 445
Gly Met Lys Gly Glu Arg Arg Arg Gly Lys Gly His Asp Gly Leu Tyr
450 455 460
Gln Gly Leu Ser Thr Ala Thr Lys Asp Thr Tyr Asp Ala Leu His Met
465 470 475 480
Gln Ala Leu Pro Pro Arg
485
<210> 150
<211> 1461
<212> DNA
<213> artificial sequence
<220>
<223> BCMA31.BBZ NT
<400> 150
atgctgctgc tggtgaccag cctgctgctg tgcgagctgc cccaccccgc ctttctgctg 60
atcccccaat ctgccctgac tcagcctccc tccgcgtccg ggtctcctgg acagtcagtc 120
accatctcct gcactggaac cagcagtgac gttggtactt ataattatgt ctcctggtac 180
caacaacacc caggcaaagc ccccaagctc atgatttatg acgtcaatca gcggccctca 240
ggggtccctg atcgcttctc tggctccaag tctggcaaca cggcctccct gaccgtctct 300
gggctccagg ctgaggatga ggctgattat tactgcagct catatggagg cagcaacaat 360
ttggtattcg gcggagggac caaggtcacc gtcctaggtg gtggtggttc tggcggcggc 420
ggctccggag gtggtggatc cgaagtgcaa ctggtggagt ctgggggagg cttgatccag 480
cctggggggt ccctgagact ctcctgtgca gcctctggat tcacctttag tagctattgg 540
atgagctggg tccgccaaag tccagggaag gggctggagt gggtggccaa cataaagcca 600
gatggaagtg acaaatacta tgtggactct gtgaagggcc gattcaccat ctccagagac 660
aacgccaaga actcactgga tctgcaaatg aacagcctga gaggcgaaga cacggctatt 720
tattactgcg cgagaggtgc caccacctat ggctcctggg gccagggaac cctggtcact 780
gtctcctcaa ccactacccc agcaccgcgg ccacccaccc cggctcctac catcgcctcc 840
cagcctctgt ccctgcgtcc ggaggcatgt agacccgcag ctggtggggc cgtgcatacc 900
cggggtcttg acttcgcctg cgatatctac atttgggccc ctctggctgg tacttgcggg 960
gtcctgctgc tttcactcgt gatcactctt tactgtaaac ggggcagaaa gaaactcctg 1020
tatatattca aacaaccatt tatgagacca gtacaaacta ctcaagagga agatggctgt 1080
agctgccgat ttccagaaga agaagaagga ggatgtgaac tgagagtgaa gttcagcagg 1140
agcgcagacg cccccgcgta ccagcagggc cagaaccagc tctataacga gctcaatcta 1200
ggacgaagag aggagtacga tgttttggac aagagacgtg gccgggaccc tgagatgggg 1260
ggaaagccga gaaggaagaa ccctcaggaa ggcctgtaca atgaactgca gaaagataag 1320
atggcggagg cctacagtga gattgggatg aaaggcgagc gccggagggg caaggggcac 1380
gatggccttt accagggtct cagtacagcc accaaggaca cctacgacgc ccttcacatg 1440
caggccctgc cccctcgcta a 1461
<210> 155
<211> 5
<212> PRT
<213> artificial sequence
<220>
<223> connector
<220>
<221> REPEAT
<222> (1)..(5)
<223> (GGGGS)n, n=1,2, 3, 4, or 5
<400> 155
Gly Gly Gly Gly Ser
1 5
<210> 156
<211> 5
<212> PRT
<213> artificial sequence
<220>
<223> connector
<220>
<221> REPEAT
<222> (1)..(5)
<223> (EAAAK)n, n=1,2, 3, 4, or 5
<400> 156
Glu Ala Ala Ala Lys
1 5
<210> 157
<211> 3
<212> PRT
<213> artificial sequence
<220>
<223> connector
<220>
<221> REPEAT
<222> (1)..(2)
<223> (PA)nP, n=1, 2, 3, 4,or 5
<400> 157
Pro Ala Pro
1
<210> 158
<211> 15
<212> PRT
<213> artificial sequence
<220>
<223> connector
<400> 158
Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser Gly Gly Gly Gly Ser
1 5 10 15
<210> 159
<211> 164
<212> PRT
<213> artificial sequence
<220>
<223> human CD3 zeta
<400> 159
Met Lys Trp Lys Ala Leu Phe Thr Ala Ala Ile Leu Gln Ala Gln Leu
1 5 10 15
Pro Ile Thr Glu Ala Gln Ser Phe Gly Leu Leu Asp Pro Lys Leu Cys
20 25 30
Tyr Leu Leu Asp Gly Ile Leu Phe Ile Tyr Gly Val Ile Leu Thr Ala
35 40 45
Leu Phe Leu Arg Val Lys Phe Ser Arg Ser Ala Asp Ala Pro Ala Tyr
50 55 60
Gln Gln Gly Gln Asn Gln Leu Tyr Asn Glu Leu Asn Leu Gly Arg Arg
65 70 75 80
Glu Glu Tyr Asp Val Leu Asp Lys Arg Arg Gly Arg Asp Pro Glu Met
85 90 95
Gly Gly Lys Pro Gln Arg Arg Lys Asn Pro Gln Glu Gly Leu Tyr Asn
100 105 110
Glu Leu Gln Lys Asp Lys Met Ala Glu Ala Tyr Ser Glu Ile Gly Met
115 120 125
Lys Gly Glu Arg Arg Arg Gly Lys Gly His Asp Gly Leu Tyr Gln Gly
130 135 140
Leu Ser Thr Ala Thr Lys Asp Thr Tyr Asp Ala Leu His Met Gln Ala
145 150 155 160
Leu Pro Pro Arg
<210> 170
<211> 220
<212> PRT
<213> artificial sequence
<220>
<223> human CD28
<400> 170
Met Leu Arg Leu Leu Leu Ala Leu Asn Leu Phe Pro Ser Ile Gln Val
1 5 10 15
Thr Gly Asn Lys Ile Leu Val Lys Gln Ser Pro Met Leu Val Ala Tyr
20 25 30
Asp Asn Ala Val Asn Leu Ser Cys Lys Tyr Ser Tyr Asn Leu Phe Ser
35 40 45
Arg Glu Phe Arg Ala Ser Leu His Lys Gly Leu Asp Ser Ala Val Glu
50 55 60
Val Cys Val Val Tyr Gly Asn Tyr Ser Gln Gln Leu Gln Val Tyr Ser
65 70 75 80
Lys Thr Gly Phe Asn Cys Asp Gly Lys Leu Gly Asn Glu Ser Val Thr
85 90 95
Phe Tyr Leu Gln Asn Leu Tyr Val Asn Gln Thr Asp Ile Tyr Phe Cys
100 105 110
Lys Ile Glu Val Met Tyr Pro Pro Pro Tyr Leu Asp Asn Glu Lys Ser
115 120 125
Asn Gly Thr Ile Ile His Val Lys Gly Lys His Leu Cys Pro Ser Pro
130 135 140
Leu Phe Pro Gly Pro Ser Lys Pro Phe Trp Val Leu Val Val Val Gly
145 150 155 160
Gly Val Leu Ala Cys Tyr Ser Leu Leu Val Thr Val Ala Phe Ile Ile
165 170 175
Phe Trp Val Arg Ser Lys Arg Ser Arg Leu Leu His Ser Asp Tyr Met
180 185 190
Asn Met Thr Pro Arg Arg Pro Gly Pro Thr Arg Lys His Tyr Gln Pro
195 200 205
Tyr Ala Pro Pro Arg Asp Phe Ala Ala Tyr Arg Ser
210 215 220
<210> 171
<211> 255
<212> PRT
<213> artificial sequence
<220>
<223> person 4-1BB
<400> 171
Met Gly Asn Ser Cys Tyr Asn Ile Val Ala Thr Leu Leu Leu Val Leu
1 5 10 15
Asn Phe Glu Arg Thr Arg Ser Leu Gln Asp Pro Cys Ser Asn Cys Pro
20 25 30
Ala Gly Thr Phe Cys Asp Asn Asn Arg Asn Gln Ile Cys Ser Pro Cys
35 40 45
Pro Pro Asn Ser Phe Ser Ser Ala Gly Gly Gln Arg Thr Cys Asp Ile
50 55 60
Cys Arg Gln Cys Lys Gly Val Phe Arg Thr Arg Lys Glu Cys Ser Ser
65 70 75 80
Thr Ser Asn Ala Glu Cys Asp Cys Thr Pro Gly Phe His Cys Leu Gly
85 90 95
Ala Gly Cys Ser Met Cys Glu Gln Asp Cys Lys Gln Gly Gln Glu Leu
100 105 110
Thr Lys Lys Gly Cys Lys Asp Cys Cys Phe Gly Thr Phe Asn Asp Gln
115 120 125
Lys Arg Gly Ile Cys Arg Pro Trp Thr Asn Cys Ser Leu Asp Gly Lys
130 135 140
Ser Val Leu Val Asn Gly Thr Lys Glu Arg Asp Val Val Cys Gly Pro
145 150 155 160
Ser Pro Ala Asp Leu Ser Pro Gly Ala Ser Ser Val Thr Pro Pro Ala
165 170 175
Pro Ala Arg Glu Pro Gly His Ser Pro Gln Ile Ile Ser Phe Phe Leu
180 185 190
Ala Leu Thr Ser Thr Ala Leu Leu Phe Leu Leu Phe Phe Leu Thr Leu
195 200 205
Arg Phe Ser Val Val Lys Arg Gly Arg Lys Lys Leu Leu Tyr Ile Phe
210 215 220
Lys Gln Pro Phe Met Arg Pro Val Gln Thr Thr Gln Glu Glu Asp Gly
225 230 235 240
Cys Ser Cys Arg Phe Pro Glu Glu Glu Glu Gly Gly Cys Glu Leu
245 250 255
<210> 184
<211> 235
<212> PRT
<213> artificial sequence
<220>
<223> human CD8
<400> 184
Met Ala Leu Pro Val Thr Ala Leu Leu Leu Pro Leu Ala Leu Leu Leu
1 5 10 15
His Ala Ala Arg Pro Ser Gln Phe Arg Val Ser Pro Leu Asp Arg Thr
20 25 30
Trp Asn Leu Gly Glu Thr Val Glu Leu Lys Cys Gln Val Leu Leu Ser
35 40 45
Asn Pro Thr Ser Gly Cys Ser Trp Leu Phe Gln Pro Arg Gly Ala Ala
50 55 60
Ala Ser Pro Thr Phe Leu Leu Tyr Leu Ser Gln Asn Lys Pro Lys Ala
65 70 75 80
Ala Glu Gly Leu Asp Thr Gln Arg Phe Ser Gly Lys Arg Leu Gly Asp
85 90 95
Thr Phe Val Leu Thr Leu Ser Asp Phe Arg Arg Glu Asn Glu Gly Tyr
100 105 110
Tyr Phe Cys Ser Ala Leu Ser Asn Ser Ile Met Tyr Phe Ser His Phe
115 120 125
Val Pro Val Phe Leu Pro Ala Lys Pro Thr Thr Thr Pro Ala Pro Arg
130 135 140
Pro Pro Thr Pro Ala Pro Thr Ile Ala Ser Gln Pro Leu Ser Leu Arg
145 150 155 160
Pro Glu Ala Cys Arg Pro Ala Ala Gly Gly Ala Val His Thr Arg Gly
165 170 175
Leu Asp Phe Ala Cys Asp Ile Tyr Ile Trp Ala Pro Leu Ala Gly Thr
180 185 190
Cys Gly Val Leu Leu Leu Ser Leu Val Ile Thr Leu Tyr Cys Asn His
195 200 205
Arg Asn Arg Arg Arg Val Cys Lys Cys Pro Arg Pro Val Val Lys Ser
210 215 220
Gly Asp Lys Pro Ser Leu Ser Ala Arg Tyr Val
225 230 235

Claims (69)

1. An antibody or antigen-binding fragment thereof that specifically binds BCMA, comprising:
(a) A light chain variable region (VL) comprising light chain CDR1 (VL CDR 1), light chain CDR2 (VL CDR 2), and light chain CDR3 (VL CDR 3) having amino acid sequences of SEQ ID NOs 8, 18, and 28, respectively; and
(b) A heavy chain variable region (VH) comprising a heavy chain CDR1 (VH CDR 1), a heavy chain CDR2 (VH CDR 2), and a heavy chain CDR3 (VH CDR 3) having the amino acid sequences SEQ ID NOS 39, 51 and 63, respectively.
2. The antibody or antigen-binding fragment of claim 1, comprising: (a) VL which has at least 85% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 85% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
3. The antibody or antigen-binding fragment of claim 1, comprising: (a) VL which has at least 90% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 90% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
4. The antibody or antigen-binding fragment of claim 1, comprising: (a) VL which has at least 95% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 95% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
5. The antibody or antigen-binding fragment of claim 1, comprising: (a) VL which has at least 98% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 98% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
6. The antibody or antigen-binding fragment of claim 2, comprising a VL and a VH, wherein the VL and VH have the amino acid sequences set forth in SEQ ID NOs 75 and 87, respectively.
7. An antibody or antigen-binding fragment thereof that specifically binds BCMA comprising
(a) A VL comprising VL CDR1, CDR2 and CDR3, said VL CDR1, CDR2 and CDR3 being derived from a VL having the amino acid sequence shown in SEQ ID No. 75; and
(b) A VH comprising VH CDR1, CDR2 and CDR3, said VH CDR1, CDR2 and CDR3 being derived from a VH having the amino acid sequence shown in SEQ ID No. 87; the CDRs of which are defined by Kabat, chothia, IMGT, abM or Contact.
8. The antibody or antigen-binding fragment of claim 7, comprising: (a) VL which has at least 85% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 85% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
9. The antibody or antigen-binding fragment of claim 7, comprising: (a) VL which has at least 90% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 90% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
10. The antibody or antigen-binding fragment of claim 7, comprising: (a) VL which has at least 95% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 95% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
11. The antibody or antigen-binding fragment of claim 7, comprising: (a) VL which has at least 98% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having at least 98% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
12. The antibody or antigen-binding fragment of claim 7, comprising: (a) VL which has 100% sequence identity to the amino acid sequence shown in SEQ ID NO. 75; and (b) a VH having 100% sequence identity to the amino acid sequence shown in SEQ ID NO. 87.
13. The antibody or antigen-binding fragment of claim 1, which is a monoclonal antibody or antigen-binding fragment.
14. The antibody or antigen binding fragment of claim 1, which is a bispecific antibody or a multispecific antibody.
15. The antibody or antigen binding fragment of claim 1, which is a bispecific T cell engager (BiTE).
16. The antibody or antigen binding fragment of claim 1, selected from the group consisting of an IgG1 antibody, an IgG2 antibody, an IgG3 antibody, and an IgG4 antibody.
17. The antibody or antigen binding fragment of claim 1 selected from the group consisting of Fab, fab ', F (ab') 2 Fv, scFv and (scFv) 2 A group of groups.
18. The antibody of claim 17, which is an scFv.
19. The antibody or antigen-binding fragment of claim 1, which is a chimeric antibody or antigen-binding fragment, a humanized antibody or antigen-binding fragment, or a human antibody or antigen-binding fragment.
20. The antibody or antigen-binding fragment of claim 19, which is a human antibody or antigen-binding fragment.
21. The antibody or antigen-binding fragment of claim 7, which is a monoclonal antibody or antigen-binding fragment.
22. The antibody or antigen binding fragment of claim 7, which is a bispecific antibody or a multispecific antibody.
23. The antibody or antigen binding fragment of claim 7, which is a bispecific T cell engager (BiTE).
24. The antibody or antigen binding fragment of claim 7, selected from the group consisting of an IgG1 antibody, an IgG2 antibody, an IgG3 antibody, and an IgG4 antibody.
25. The antibody or antigen binding fragment of claim 7 selected from the group consisting of Fab, fab ', F (ab') 2 Fv, scFv, and (scFv) 2 A group of groups.
26. The antibody of claim 7, which is an scFv.
27. The antibody or antigen-binding fragment of claim 7, which is a chimeric antibody or antigen-binding fragment, a humanized antibody or antigen-binding fragment, or a human antibody or antigen-binding fragment.
28. The antibody or antigen-binding fragment of claim 7, which is a human antibody or antigen-binding fragment.
29. A polynucleotide encoding the antibody or antigen-binding fragment of any one of claims 1-28.
30. The polynucleotide of claim 29, which is a messenger RNA (mRNA).
31. A vector comprising the polynucleotide of claim 29.
32. A host cell comprising the polynucleotide of claim 29.
33. A Chimeric Antigen Receptor (CAR) that specifically binds BCMA comprising, from N-terminus to C-terminus:
(a) A BCMA binding domain comprising the antibody or antigen binding fragment of claim 1;
(b) A transmembrane domain; and
(c) Cytoplasmic domains.
34. The CAR of claim 33, wherein the transmembrane domain is derived from CD8, CD28, CD3 ζ, CD4, 4-1BB, OX40, ICOS, CTLA-4, PD-1, LAG-3, 2B4, BTLA, TCR a chain, TCR β chain, or TCR ζ chain, CD3 epsilon, CD45, CD5, CD8, CD9, CD16, CD22, CD33, CD37, CD64, CD80, CD86, CD134, or CD154.
35. The CAR of claim 33, wherein the transmembrane domain comprises a CD8 transmembrane region or a CD28 transmembrane region.
36. The CAR of claim 33, wherein the cytoplasmic domain comprises a signaling domain derived from cd3ζ, fcrγ, fcγriia, fcrβ, cd3γ, cd3δ, cd3ε, CD5, CD22, CD79a, CD79b, DAP10, DAP12, or any combination thereof.
37. The CAR of claim 36, wherein the cytoplasmic domain further comprises a co-stimulatory domain derived from CD28, 4-1BB (CD 137), OX40, ICOS, DAP10, 2B4, CD27, CD30, CD40, CD2, CD7, LIGHT, GITR, TLR, DR3, CD43, or any combination thereof.
38. The CAR of claim 33, wherein the cytoplasmic domain comprises a CD3 zeta signaling domain and a 4-1BB co-stimulatory domain.
39. The CAR of claim 33, wherein the cytoplasmic domain comprises a CD3 zeta signaling domain and a CD28 co-stimulatory domain.
40. The CAR of claim 33, further comprising a CD8 hinge, the CD8 hinge being located between the antibody or antigen binding fragment and the transmembrane domain.
41. A Chimeric Antigen Receptor (CAR) that specifically binds BCMA comprising, from N-terminus to C-terminus:
(a) A BCMA binding domain comprising the antibody or antigen binding fragment of claim 7;
(b) A transmembrane domain; and
(c) Cytoplasmic domains.
42. The CAR of claim 41, wherein the transmembrane domain is derived from CD8, CD28, CD3 ζ, CD4, 4-1BB, OX40, ICOS, CTLA-4, PD-1, LAG-3, 2B4, BTLA, TCR a chain, TCR β chain, or TCR ζ chain, CD3 epsilon, CD45, CD5, CD8, CD9, CD16, CD22, CD33, CD37, CD64, CD80, CD86, CD134, or CD154.
43. The CAR of claim 41, wherein the transmembrane domain comprises a CD8 transmembrane region or a CD28 transmembrane region.
44. The CAR of claim 41, wherein the cytoplasmic domain comprises a signaling domain derived from cd3ζ, fcrγ, fcγriia, fcrβ, cd3γ, cd3δ, cd3ε, CD5, CD22, CD79a, CD79b, DAP10, DAP12, or any combination thereof.
45. The CAR of claim 44, wherein the cytoplasmic domain further comprises a co-stimulatory domain derived from CD28, 4-1BB (CD 137), OX40, ICOS, DAP10, 2B4, CD27, CD30, CD40, CD2, CD7, LIGHT, GITR, TLR, DR3, CD43, or any combination thereof.
46. The CAR of claim 41, wherein the cytoplasmic domain comprises a CD3 zeta signaling domain and a 4-1BB co-stimulatory domain.
47. The CAR of claim 41, wherein the cytoplasmic domain comprises a CD3 zeta signaling domain and a CD28 co-stimulatory domain.
48. The CAR of claim 41, further comprising a CD8 hinge, the CD8 hinge being located between the antibody or antigen binding fragment and the transmembrane domain.
49. A CAR that specifically binds BCMA comprising the amino acid sequence shown by SEQ ID No. 138.
50. A polynucleotide encoding the CAR of any one of claims 33-49.
51. The polynucleotide according to claim 50 which is mRNA.
52. A vector comprising the polynucleotide of claim 50.
53. A cell comprising the polynucleotide of claim 50.
54. The cell of claim 53, which is an immune effector cell.
55. The cell according to claim 54, which is derived from a cell isolated from peripheral blood or bone marrow.
56. The cell of claim 53, which is a T cell or NK cell.
57. A cell population comprising the cells of claim 53, wherein the cell population is derived from Peripheral Blood Mononuclear Cells (PBMC), peripheral Blood Lymphocytes (PBL), tumor-infiltrating lymphocytes (TIL), cytokine-induced killer Cells (CIK), lymphokine-activated killer cells (LAK), or bone marrow-infiltrating lymphocytes (MILs).
58. A pharmaceutical composition comprising a therapeutically effective amount of the antibody or antigen-binding fragment of any one of claims 1-28, and a pharmaceutically acceptable carrier.
59. A pharmaceutical composition comprising a therapeutically effective amount of the cell of any one of claims 53-56 or the population of cells of claim 57, and a pharmaceutically acceptable carrier.
60. Use of an antibody or antigen binding fragment according to any one of claims 1 to 28, or a cell according to any one of claims 53 to 56, or a cell population according to claim 57, in the manufacture of a medicament for the treatment of a B cell malignancy.
61. The use of claim 60, wherein the antibody or antigen-binding fragment, or cell or population of cells is used in combination with additional therapy.
62. The use of claim 60, wherein the B cell malignancy is multiple myeloma.
63. The use of claim 62, wherein the multiple myeloma is non-secretory multiple myeloma or smoldering multiple myeloma.
64. The use of claim 60, wherein the B cell malignancy is macroglobulinemia fahrenheit.
65. The use of claim 60, wherein the B cell malignancy is Hodgkin's lymphoma.
66. The use of claim 60, wherein the B cell malignancy is non-Hodgkin's lymphoma.
67. A method of making a cell capable of expressing a CAR that specifically binds BCMA, comprising transferring the polynucleotide of claim 50 to a cell.
68. The method of claim 67, wherein the polynucleotide is transferred by electroporation.
69. The method of claim 67, wherein the cells are selected from the group consisting of T cells, NK cells, NKT cells, macrophages and granulocytes.
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