CN115232793A - Gene editing system for constructing ALS model pig nuclear transplantation donor cells with SOD1 gene mutation and application thereof - Google Patents

Gene editing system for constructing ALS model pig nuclear transplantation donor cells with SOD1 gene mutation and application thereof Download PDF

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CN115232793A
CN115232793A CN202110555953.4A CN202110555953A CN115232793A CN 115232793 A CN115232793 A CN 115232793A CN 202110555953 A CN202110555953 A CN 202110555953A CN 115232793 A CN115232793 A CN 115232793A
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sod1
protein
lys
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glu
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牛冬
汪滔
马翔
陶裴裴
刘瑜
曾为俊
王磊
程锐
黄彩云
赵泽英
段星
刘璐
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Nanjing Qizhen Genetic Engineering Co Ltd
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Abstract

The invention discloses a gene for constructing ALS model pig nuclear transfer donor cells with SOD1 gene mutationThe editing system and the application thereof. The invention provides a method for preparing recombinant cells, which comprises the following steps: SOD1- g RNA1 (the binding region of the target sequence is shown as nucleotides 3-22 in SEQ ID NO: 18), SOD1- g RNA6 (the target sequence binding region is shown as 3-22 nucleotides in SEQ ID NO: 19), SOD1-mutant-ss160 (shown as SEQ ID NO: 20) and NCN protein (Cas 9 protein or fusion protein with Cas9 protein) are co-transfected into pig cells to obtain recombinant cells. The invention adopts CRISPR/Cas9 technology combined with ssoDN homologous recombination technology to edit point mutation gene of SOD1 gene, simulates natural morbidity genetic characteristic of ALS, obtains single cell clone of SOD1 gene with accurate point mutation, and lays a foundation for breeding ALS disease model pig by somatic cell nuclear transfer animal cloning technology in later period.

Description

Gene editing system for constructing ALS model pig nuclear transplantation donor cells with SOD1 gene mutation and application thereof
Technical Field
The invention belongs to the technical field of gene editing, and particularly relates to a gene editing system for constructing amyotrophic lateral sclerosis model pig nuclear transplantation donor cells with SOD1 gene mutation and application thereof.
Background
Amyotrophic Lateral Sclerosis, also known as Amyotrophic Lateral Sclerosis (ALS), is a major type of Motor Neuron Disease (MND), commonly known as "progressive personality disorder", and is characterized by progressive degeneration of Motor nerve cells (neurons) in the brain and spinal cord. The motor neurons control the muscle activity of human body during movement, speaking, swallowing and breathing, and the motor neurons are not stimulated by nerves, so that the muscles are gradually atrophied and degenerated, and the muscle is gradually weakened to paralysis, and the speaking, swallowing and breathing functions are reduced until the death due to respiratory failure. The disease does not invade the sensory nerve of the human body, so the intelligence, the memory or the sensation of the patient are not influenced. The disease generally progresses rapidly, beginning with the appearance of symptoms, with a mean life span of 3-5 years, but fluctuates greatly due to individual heterogeneity. "gradually frozen human disease" is listed as one of 5 major diseases in parallel with AIDS, cancer and the like by the world health organization, has the incidence rate of about three ten-thousandth, and belongs to rare diseases in the world.
The international union of the society of "people getting frozen" determines that 21 days in 6 months per year are the "people getting frozen in the world" in the international society of diseases and friends held in Denmark in 2000, and various activities related to motor neuron diseases are held in various places in the day, and people hope to attract attention and social care of patients suffering from the afraid diseases through the activities. At present, the pathophysiological mechanism of ALS is not completely clear, and no accurate epidemiological report on the incidence rate of ALS exists in China, but the influence of genetic factors related to ALS is widely accepted. More than about 90% of ALS cases are sporadic (SALS) and the rest are familial (falcial ALS), and more than 30 genes have been identified as being associated with FALS. Among the most common and most studied genes are ALS1 (SOD 1), ALS10 (TARDBP), ALS6 (FUS), FTDALS1 (C9 orf 72), etc., which are associated with certain specific clinical features of ALS including onset age, location and survival.
SOD1 (superoxide dismutase 1), the first gene associated with FALS found by the research team of the University of Mazhou Medical School (UMMS) in 1993, is associated with SOD1 gene mutation in about one fifth of FALS. At present, more than 180 mutations have been found in the human SOD1 gene to be associated with ALS, with almost all mutations being autosomal dominant inheritance. The gene mutation changes the configuration of SOD1 protein, and a large number of high-toxicity hydroxyl radicals are accumulated to cause mitochondrial disorder, RNA metabolic disorder and DNA damage. At present, it is generally believed that the neurotoxicity of the mutant SOD1 protein is caused by abnormal accumulation of the mutant SOD1 protein on the surfaces of mitochondria and other organelles, which affects the function of the organelles, or abnormal accumulation of the mutant SOD protein, but none of the mutant SOD1 protein is verified by experimental animal models.
Research on the occurrence and development mechanism of ALS caused by SOD1 mutation and research and development of corresponding drugs are carried out on the basis of animal models, and the currently common animal model is a mouse model, however, mice are greatly different from humans in body type, organ size, physiology, pathology and other aspects, and can not truly simulate normal physiological and pathological states of humans. The pig is a large animal, is a main meat food supply animal for human for a long time, is similar to human in body size and physiological function, is easy to breed and feed in a large scale, has low requirements on ethics, animal protection and the like, and is an ideal human disease model animal.
Gene editing is a biotechnology that has been greatly developed in recent years, and includes editing technologies from homologous recombination-based gene editing to nuclease-based ZFNs, TALENs, CRISPR/Cas9, and the like, wherein CRISPR/Cas9 technology is currently the most advanced gene editing technology. Currently, gene editing techniques are increasingly applied to the production of animal models.
Homologous recombination (HDR) is the exchange of DNA sequence information by sequence homology: that is, the repair template contains the desired insert, and the recombination arms with sequence homology near the insertion site are at both ends of the repair template. In the past, double-stranded DNA (dsDNA) was commonly used as a repair template, but recent studies have revealed the superiority of single-stranded oligodeoxynucleotides (ssodns) as HDR donor templates. First, ssODN is more site-specific as a donor template than dsDNA template, which is susceptible to random insertions. Second, the ssODN requires shorter length for homologous recombination arms than dsDNA templates, and 30-60 base-on-a-side recombination arm designs can achieve high efficiency and stable HDR, which provides higher insertion efficiency than similar dsDNA templates. Third, dsDNA is easily incorporated by the NHEJ repair pathway, resulting in duplication of the homology arms or partial integration of the dsDNA template, which is not easily produced by ssODN. In addition, dsDNAs are detrimental to cultured cells, transfection of linear or plasmid dsDNAs is inefficient, and causes adverse reactions in the cells, and the ssODN templates are more advantageous in these respects.
Disclosure of Invention
The invention aims to provide a gene editing system for constructing ALS model pig nuclear transfer donor cells with SOD1 gene mutation and application thereof.
The invention provides a method for preparing recombinant cells, which comprises the following steps: using the nucleotide sequence of SEQ ID NO:20 to substitute the DNA molecule shown in SEQ ID NO:21 to obtain the recombinant cell.
Using the nucleotide sequence of SEQ ID NO:20 to substitute the DNA molecule shown in SEQ ID NO:21 is as follows: co-transfecting the SOD1-gRNA1, the SOD1-gRNA6, the SOD1-mutant-ss160 and the NCN protein into a pig cell; the SOD1-gRNA1 is sgRNA, and a target sequence binding region is shown in SEQ ID NO:18, nucleotides 3 to 22; the SOD1-gRNA6 is sgRNA, and a target sequence binding region is shown in SEQ ID NO:19 at nucleotides 3 to 22; the SOD1-mutant-ss160 is SEQ ID NO:20, a single-stranded DNA molecule; the NCN protein is a Cas9 protein or a fusion protein with a Cas9 protein.
Specifically, the NCN protein is shown as SEQ ID NO:3, respectively.
Specifically, the SOD1-gRNA1 is shown as SEQ ID NO:18, respectively.
Specifically, the SOD1-gRNA6 is shown as SEQ ID NO:19, respectively.
Specifically, the SOD1-gRNA1 is shown as SEQ ID NO: shown at 10.
Specifically, the SOD1-gRNA6 is shown as SEQ ID NO: shown at 15.
The porcine cells are porcine fibroblasts.
The porcine cells are porcine primary fibroblasts.
The proportions of the pig cells, the SOD1-gRNA1, the SOD1-gRNA6, the SOD1-mutant-ss160 and the NCN protein are as follows in sequence: 10 ten thousand porcine primary fibroblasts: 0.8-1.2 μ g SOD1-gRNA1:0.8-1.2 μ g SOD1-gRNA6: 1.8-2.2. Mu.g SOD1-mutant-ss160: 3-5. Mu.g NCN protein.
The proportions of the pig cell, SOD1-gRNA1, SOD1-gRNA6, SOD1-mutant-ss160 and NCN protein are as follows in sequence: 10 ten thousand porcine primary fibroblasts: 1 μ g SOD1-gRNA1:1 μ g SOD1-gRNA6:2 μ g SOD1-mutant-ss160: mu.g NCN protein.
The co-transfection is specifically a shock transfection mode.
The parameter settings of the electroporation transfection can be specifically as follows: 1450V, 10ms, 3pulse.
The co-transfection may be specifically carried out using a mammalian nuclear transfection kit (Neon kit, thermofeisher) and a Neon TM transfection system electrotransfer apparatus.
The preparation method of the NCN protein comprises the following steps:
(1) Introducing the plasmid pKG-GE4 into escherichia coli BL21 (DE 3) to obtain a recombinant strain;
(2) Culturing the recombinant strain by adopting a liquid culture medium at 37 ℃, then adding IPTG (isopropyl-beta-thiogalactoside) and carrying out induced culture at 25 ℃, and then collecting thalli;
(3) Crushing the collected thalli, and collecting a crude protein solution;
(4) Purification of the crude protein solution with His by affinity chromatography 6 A fusion protein of the tag;
(5) Cleavage of enzymes with His by enterokinase 6 The fusion protein of the tag is removed by Ni-NTA resin, and the His with the tag cut by enzyme is 6 A tagged polypeptide, resulting in a purified NCN protein;
plasmid pKG-GE4 has the sequence shown in SEQ ID NO:1, nucleotide 5209-9852.
The preparation method of the NCN protein specifically comprises the following steps:
(1) The plasmid pKG-GE4 was introduced into E.coli BL21 (DE 3) to obtain a recombinant strain.
(2) Inoculating the recombinant bacteria obtained in the step (1) to a liquid LB culture medium containing ampicillin, and carrying out shake culture;
(3) Inoculating the bacterial liquid obtained in the step (2) to a liquid LB culture medium, and performing shaking culture at 37 ℃ and 230rpm to OD 600nm The value =1.0, then IPTG was added and allowed to stand in the systemThe concentration of the strain is 0.5mM, then the strain is cultured for 12 hours at 25 ℃ and 230rpm by oscillation, and then the strain is collected by centrifugation;
(4) Taking the thalli obtained in the step (3), and washing the thalli with a PBS (phosphate buffer solution);
(5) Adding the crude extraction buffer solution into the thalli obtained in the step (4), suspending the thalli, then crushing the thalli, then centrifugally collecting supernate, filtering by adopting a filter membrane with the aperture of 0.22 mu m, and collecting filtrate;
(6) Purifying the filtrate obtained in step (5) to give a purified product having His by affinity chromatography 6 A fusion protein of the tag (the fusion protein shown in SEQ ID NO: 2);
(7) Taking the post-column solution collected in the step (6), concentrating by using an ultrafiltration tube, and then diluting with 25mM Tris-HCl (pH8.0);
(8) Adding recombinant bovine enterokinase with His tag into the solution obtained in the step (7), and performing enzyme digestion;
(9) Mixing the solution obtained in the step (8) with Ni-NTA resin, incubating, centrifuging and collecting supernatant;
(10) And (4) concentrating the supernatant obtained in the step (9) by using an ultrafiltration tube, and then adding the concentrated supernatant into an enzyme stock solution to obtain the NCN protein solution.
Purifying the filtrate obtained in step (5) by affinity chromatography to obtain a purified product having His 6 The specific method of the labeled fusion protein is as follows:
firstly, balancing a Ni-NTA agarose column by using a balance solution with 5 column volumes (the flow rate is 1 ml/min); then, 50ml of the filtrate obtained in the step (5) is loaded (the flow rate is 0.5-1 ml/min); the column was then washed with 5 column volumes of equilibration solution (flow rate 1 ml/min); the column was then washed with 5 column volumes of buffer (flow rate 1 ml/min) to remove contaminating proteins; then eluting with 10 column volumes of eluent at a flow rate of 0.5-1ml/min, and collecting the solution (90-100 ml) after passing through the column.
The invention also provides a protein (NCN protein) such as SEQ ID NO:3, respectively.
The invention also provides a protein (PRONCN protein) which sequentially comprises the following components from upstream to downstream: signal peptide, molecular chaperone protein, protein tag, protease cleavage site, nuclear localization signal, cas9 protein, nuclear localization signal.
The signal peptide has the function of promoting protein secretion expression. The signal peptide may be selected from the group consisting of the escherichia coli alkaline phosphatase (phoA) signal peptide, the staphylococcus aureus protein a signal peptide, the escherichia coli outer membrane protein (ompa) signal peptide or the signal peptide of any other prokaryotic gene, preferably the alkaline phosphatase signal peptide (phoA signal peptide). The signal peptide of alkaline phosphatase is used to guide the secretory expression of the target protein into the bacterial periplasm cavity so as to be separated from the protein in the bacterial cell, and the target protein secreted into the bacterial periplasm cavity is soluble expression and can be cleaved by the signal peptidase in the bacterial periplasm cavity.
The chaperone protein functions to increase the solubility of the protein. The chaperone may be any protein that assists in the formation of disulfide bonds, preferably a thioredoxin (TrxA protein). The thioredoxin can be used as a molecular chaperone to help a co-expressed target protein (such as a Cas9 protein) to form a disulfide bond, so that the stability and the folding correctness of the protein are improved, and the solubility and the activity of the target protein are increased.
The protein tag functions for protein purification. The Tag can be His Tag (His-Tag, his) 6 Protein tag), GST tag, flag tag, HA tag, c-Myc tag, or any other protein tag, more preferably His tag. The His tag can be combined with a Ni column, and the target protein can be purified by one-step Ni column affinity chromatography, so that the purification process of the target protein can be greatly simplified.
The protease cleavage site functions to cleave non-functional segments after purification to release the native form of the Cas9 protein. The protease may be selected from Enterokinase (Enterokinase), factor Xa (Factor Xa), thrombin (thrombobin), TEV protease (TEV protease), HRV 3C protease (HRV 3C protease), WELQut protease or any other endoprotease, further preferably Enterokinase. EK is an enterokinase enzyme cutting site, so that fused TrxA-His segment can be conveniently cut by enterokinase to obtain the Cas9 protein in a natural form. After the commodity enterokinase enzyme digestion fusion protein with the His label is used, the TrxA-His section and the enterokinase with the His label can be removed through once affinity chromatography to obtain the Cas9 protein in a natural form, and the damage and the loss of the target protein caused by repeated purification and dialysis are avoided.
The nuclear localization signal may be any nuclear localization signal, preferably an SV40 nuclear localization signal and/or a nucleocapsin nuclear localization signal. NLS is a nuclear localization signal, and NLS sites are respectively designed at the N end and the C end of Cas9, so that Cas9 can more effectively enter a cell nucleus for gene editing.
The Cas9 protein may specifically be an spCas9 protein.
The PRONCN protein is specifically shown as SEQ ID NO:2, respectively.
The invention also protects a specific plasmid (plasmid pKG-GE 4) comprising the following elements in sequence from upstream to downstream: promoter, operator, ribosome binding site, PRONCN protein coding gene and terminator.
The promoter may specifically be a T7 promoter. The T7 promoter is a prokaryotic expression strong promoter and can efficiently drive the expression of exogenous genes.
The operon may specifically be a Lac operon. The Lac operon is a regulatory element for lactose induced expression, and after bacteria grow to a certain amount, IPTG is used for inducing the expression of the target protein at low temperature, so that the influence of the premature expression of the target protein on the growth of host bacteria can be avoided, and the solubility of the expressed target protein is also obviously improved by the induced expression at low temperature.
The ribosome binding site is a ribosome binding site for protein translation, and is essential for protein translation.
The terminator may specifically be a T7 terminator. The T7 terminator can effectively terminate gene transcription at the end of the target gene, and prevent other downstream sequences except the target gene from being transcribed and translated.
For the codon of the spCas9 protein, the codon is optimized, so that the codon preference of the escherichia coli high-efficiency expression strain E.coli BL21 (DE 3) selected by the application is completely adapted, and the expression level of the Cas9 protein is improved.
The T7 promoter is shown as SEQ ID NO:1 from nucleotide 5121 to nucleotide 5139.
The Lac operon is shown as SEQ ID NO:1 from nucleotide 5140 to nucleotide 5164.
The ribosome binding site is shown as SEQ ID NO:1, nucleotides 5178 to 5201.
The coding sequence of the alkaline phosphatase signal peptide is shown as SEQ ID NO:1, nucleotides 5209-5271.
The coding sequence of the TrxA protein is shown as SEQ ID NO:1, nucleotides 5272-5598.
The coding sequence of His-Tag is shown in SEQ ID NO:1, nucleotides 5620-5637.
The coding sequence of the enterokinase enzyme cutting site is shown as SEQ ID NO:1 from nucleotide 5638 to nucleotide 5652.
The coding sequence of the nuclear localization signal is shown as SEQ ID NO:1, nucleotides 5656-5670.
The coding sequence of the spCas9 protein is shown in SEQ ID NO:1, nucleotides 5701-9801.
The coding sequence of the nuclear localization signal is shown as SEQ ID NO:1 from nucleotide 9802 to nucleotide 9849.
The T7 terminator is shown as SEQ ID NO: nucleotides 9902-9949 of 1.
Specifically, plasmid pKG-GE4 has the sequence shown in SEQ ID NO:1, nucleotides 5121-9949.
Specifically, any one of the plasmids pKG-GE4 is shown as SEQ ID NO:1 is shown.
Compared with the commercial Cas9 protein, the activity of the NCN protein prepared by the plasmid pKG-GE4 is remarkably improved.
The invention also protects a kit which comprises any one of the SOD1-gRNA1, any one of the SOD1-gRNA6, any one of the SOD1-mutant-ss160 and any one of the NCN proteins.
The invention also provides a kit, which comprises any one of the SOD1-gRNA1, any one of the SOD1-gRNA6, any one of the SOD1-mutant-ss160 and any one of the plasmid pKG-GE4. The kit also comprises escherichia coli BL21 (DE 3).
Any of the kits above further comprising porcine cells.
The porcine cells are porcine fibroblasts.
The porcine cells are porcine primary fibroblasts.
The invention also protects the application of any one of the SOD1-gRNA1, any one of the SOD1-gRNA6, any one of the SOD1-mutant-ss160 and any one of the NCN proteins in the preparation of a kit.
The invention also protects the application of any one of the SOD1-gRNA1, any one of the SOD1-gRNA6, any one of the SOD1-mutant-ss160 and any one of the plasmid pKG-GE4 in the preparation of a kit.
The use of any one of the above kits is (a) or (b) or (c): (a) preparing a recombinant cell; (b) preparing model pigs of amyotrophic lateral sclerosis; (c) Preparing a cell model of amyotrophic lateral sclerosis or an organization model of the amyotrophic lateral sclerosis or an organ model of the amyotrophic lateral sclerosis.
The invention also protects the recombinant cell prepared by any one of the methods.
The invention also protects the application of the recombinant cell in preparing model pigs with amyotrophic lateral sclerosis.
The recombinant cell is used as a nuclear transplantation donor cell to clone somatic cells to obtain a cloned pig, namely the amyotrophic lateral sclerosis model pig.
The invention also protects the pig tissue or the pig organ with the recombinant cell.
The invention also protects the application of the recombinant cell, the pig tissue, the pig organ or the amyotrophic lateral sclerosis model pig prepared by the recombinant cell, wherein the application is as follows (d 1) or (d 2) or (d 3) or (d 4):
(d1) Screening a medicament for treating amyotrophic lateral sclerosis;
(d2) Evaluating the drug effect of the drug for amyotrophic lateral sclerosis;
(d3) Evaluating the curative effect of gene therapy and/or cell therapy of amyotrophic lateral sclerosis;
(d4) The pathogenesis of amyotrophic lateral sclerosis was studied.
Any one of the above pigs may be a fragrant pig from Yangjiang.
Compared with the prior art, the invention at least has the following beneficial effects:
(1) The subject of the invention (pig) has better applicability than other animals (rats, mice, primates).
Rodents such as rats and mice have great differences from humans in body types, organ sizes, physiology, pathology and the like, and cannot truly simulate normal physiological and pathological states of humans. Studies have shown that over 95% of drugs validated to be effective in large mice are not effective in human clinical trials. In large animals, primates are animals that have a close relationship with humans, but are small in size, late in sexual maturity (mating starts at age 6-7), and are single-birth animals, and the population propagation speed is extremely slow, and the raising cost is high. In addition, primate cloning efficiency is low, difficulty is high, and cost is high.
However, pigs, which are animals related to humans other than primates, do not have the above-mentioned disadvantages, and have body types, body weights, organ sizes, and the like similar to those of humans, and are very similar to those of humans in terms of anatomy, physiology, immunology, nutritional metabolism, disease pathogenesis, and the like. Meanwhile, the pigs have early sexual maturity (4-6 months), high reproductive capacity and multiple piglets, and can form a large group within 2-3 years. In addition, the cloning technology of the pig is very mature, and the cloning and feeding cost is much lower than that of a primate. Pigs are therefore very suitable animals as models for human diseases.
(2) The vector constructed by the invention uses a strong promoter T7-lac which can efficiently express the target protein to express the target protein, and uses a signal peptide of bacterial periplasmic protein alkaline phosphatase (phoA) to guide the secretion and expression of the target protein to a bacterial periplasm cavity, so that the target protein is separated from the bacterial intracellular protein and is expressed in a soluble way. Meanwhile, the thioredoxin TrxA and the Cas9 protein are fused and expressed, the TrxA can help the coexpressed target protein to form a disulfide bond, the stability and the folding correctness of the protein are improved, and the solubility and the activity of the target protein are increased. In order to facilitate the purification of the target protein, the His tag is designed, and the target protein can be purified through one-step Ni column affinity chromatography, so that the purification process of the target protein is greatly simplified. Meanwhile, an enterokinase enzyme cutting site is designed behind the His tag, so that the fused TrxA-His polypeptide fragment can be conveniently cut off, and the Cas9 protein in a natural form can be obtained. After the fusion protein is digested by using the enterokinase with the His tag, the TrxA-His polypeptide fragment and the enterokinase with the His tag can be removed through one-time affinity chromatography to obtain the Cas9 protein in a natural form, so that the damage and loss of the target protein caused by multiple times of purification dialysis are avoided. Meanwhile, the invention also designs an NLS site at the N end and the C end of the Cas9 respectively, so that the Cas9 can enter the cell nucleus more effectively for gene editing. In addition, the E.coli BL21 (DE 3) strain is selected as a target protein expression strain, and the strain can efficiently express and clone a foreign gene of an expression vector (such as pET-32 a) containing a bacteriophage T7 promoter. Meanwhile, as for the codon of the Cas9 protein, the codon optimization is carried out, so that the codon preference of the expression strain is completely adapted, and the expression level of the target protein is improved. In addition, after the bacteria grow to a certain amount, IPTG is used for inducing the expression of the target protein at low temperature, so that the influence of the premature expression of the target protein on the growth of host bacteria can be avoided, and the solubility of the expressed target protein is also obviously improved by inducing the expression at low temperature. Through the optimization design and experimental implementation, the activity of the obtained Cas9 protein is remarkably improved compared with that of a commercial Cas9 protein.
(3) The constructed and expressed Cas9 efficient protein is combined with the gRNA transcribed in vitro to carry out gene editing, the optimal dosage ratio of Cas9 and gRNA is optimized, and the synthesized ssODN is matched to be used as Donor DNA, so that the single cell cloning rate of the target site point mutation is up to 25 percent and is far higher than the conventional point mutation efficiency (less than 5 percent).
(4) The cloned pig containing target gene point mutation can be directly obtained by cloning somatic cell nuclear transfer animals by using the obtained target gene point mutation unicellular cloned strain, and the mutation can be stably inherited.
The method for embryo transplantation after injecting gene editing materials into fertilized eggs in the mouse model making is not suitable for making large animal (such as pig) models with longer gestation period because the probability of directly obtaining point mutation offspring is very low (less than 1 percent) and the offspring hybridization breeding is needed. Therefore, the invention adopts the methods of primary cell in-vitro editing with great technical difficulty and high challenge, ssODN homologous recombination and screening positive editing single cell clone, and directly obtains the corresponding disease model pig by somatic cell nuclear transfer animal cloning technology in the later period, thereby greatly shortening the manufacturing period of the model pig and saving manpower, material resources and financial resources.
The invention adopts CRISPR/Cas9 technology combined with ssoDN homologous recombination technology to edit point mutation gene of SOD1 gene, simulates the genetic characteristic of natural morbidity of ALS, obtains single cell clone of SOD1 gene with accurate point mutation, and lays a foundation for breeding ALS disease model pigs by somatic cell nuclear transfer animal cloning technology in the later period. The model pig provides a powerful experimental tool for researching pathogenesis of ALS and drug research and development.
The invention lays a solid foundation for obtaining ALS model pigs with SOD1 gene mutation by a gene editing means, is beneficial to research and disclose pathogenesis of ALS caused by SOD1 gene mutation, can also be used for research such as drug screening, drug effect detection, gene therapy, cell therapy and the like, can provide effective experimental data for further clinical application, and further provides a powerful experimental means for successfully treating human ALS. The invention has great application value for researching and developing ALS drugs and revealing pathogenesis of the ALS drugs.
Drawings
FIG. 1 is a schematic diagram of the structure of plasmid pX330.
FIG. 2 is a schematic diagram of the structure of plasmid pKG-GE3.
FIG. 3 is a schematic structural diagram of plasmid pKG-U6 gRNA.
FIG. 4 shows the insertion of a DNA molecule of about 20bp into the plasmid pKG-U6 gRNA.
FIG. 5 is a schematic diagram of the structure of plasmid pET-32 a.
FIG. 6 is a schematic diagram of the structure of plasmid pKG-GE4.
FIG. 7 is an electrophoretogram of the optimized dosage ratio of gRNA and NCN protein in example 3.
Fig. 8 is an electrophoretogram comparing gene editing efficiency of NCN protein and a commercial Cas9 protein in example 3.
FIG. 9 is an electrophoretogram of PCR amplification using different primer pairs using ear tissue-extracted genomes of swine designated as 1 as templates in example 4.
FIG. 10 is an electrophoretogram of PCR amplification in example 4 using the genomic DNA of 18 pigs as templates and a primer pair consisting of SOD1-E4g-JDF50 and SOD1-E4g-JDR540, respectively.
FIG. 11 is an electropherogram comparing the editing efficiency of different targets in example 4.
FIG. 12 is an electrophoretogram in example 5.
FIG. 13 shows the alignment of the reverse sequencing of clone SOD1-ss160-2 with the target site mutation sequence.
FIG. 14 shows the alignment of the reverse sequencing of clone No. SOD1-ss160-3 with the mutant sequence at the target site.
FIG. 15 shows the alignment of the reverse sequencing of clone number SOD1-ss160-21 with the target site mutation sequence.
FIG. 16 shows the alignment of the reverse sequencing of clone No. SOD1-ss160-10 with the mutant sequence at the target site.
FIG. 17 shows the alignment of the reverse sequencing of clone number SOD1-ss160-25 with the target site mutation sequence.
FIG. 18 shows the alignment of the reverse sequencing of clone No. SOD1-ss160-1 with the mutant sequence at the target site.
Detailed Description
The present invention is described in further detail below with reference to specific embodiments, which are given for the purpose of illustration only and are not intended to limit the scope of the invention. The examples provided below serve as a guide for further modifications by a person skilled in the art and do not constitute a limitation of the invention in any way.
The experimental procedures in the following examples, unless otherwise indicated, are conventional and are carried out according to the techniques or conditions described in the literature in the field or according to the instructions of the products.Materials, reagents and the like used in the following examples are commercially available unless otherwise specified. The recombinant plasmids constructed in the examples were all sequence verified. The commercial Cas9-a protein is a commercially available Cas9 protein with good effect. The commercial Cas9-B protein is a commercially available Cas9 protein with good effect. Complete culture broth (% by volume): 15% fetal bovine serum (Gibco) +83% DMEM medium (Gibco) +1% Penicilin-Streptomyces (Gibco) +1% HEPES (Solarbio). Cell culture conditions: 37 ℃ C., 5% CO 2 、5%O 2 The constant temperature incubator.
The porcine primary fibroblasts used in the examples were all prepared from porcine ear tissue, which was freshly obtained from Jiangxiang pigs. The method for preparing the primary pig fibroblast comprises the following steps: (1) taking 0.5g of pig ear tissue, removing hair and bone tissue, soaking in 75% alcohol for 30-40s, washing with PBS buffer containing 5% (by volume) Penicilin-Streptomycin (Gibco) for 5 times, and washing with PBS buffer once; (2) shearing the tissue with scissors, digesting with 5mL of 0.1% collagenase solution (Sigma) at 37 ℃ for 1h, centrifuging 500g for 5min, and removing the supernatant; (3) resuspending the precipitate with 1mL of complete culture solution, spreading into a 10cm diameter cell culture dish containing 10mL of complete culture solution and sealed with 0.2% gelatin (VWR), and culturing until the bottom of the dish is 60% full of cells; (4) after completion of step (3), the cells were digested with trypsin and collected, and then resuspended in complete medium. Used for carrying out subsequent electrotransfer experiments.
Example 1 construction of recombinant plasmid
1. Construction of eukaryotic Cas9 high-efficiency expression vector
The starting plasmid is pX330-U6-Chimeric _ BB-CBh-hSpCas9, which is called plasmid pX330 for short. The structure of plasmid pX330 is schematically shown in FIG. 1. Plasmid pX330 is a circular plasmid, as described in patent application 202010084343.6, SEQ ID NO:1 is shown.
Based on the plasmid pX330, construct plasmid pU6gRNA eEF1a-mNLS-hSpCas9-EGFP-PURO. Plasmid pU6gRNA eEF1a-mNLS-hSpCas9-EGFP-PURO, abbreviated as plasmid pKG-GE3, as described in patent application 202010084343.6 SEQ ID NO:2, respectively. The plasmid pKG-GE3 is a circular plasmid. The structure of plasmid pKG-GE3 is shown in FIG. 2. SEQ ID NO:2, nucleotides 395 to 680 form a CMV enhancer, nucleotides 682 to 890 form an EF1a promoter, nucleotides 986 to 1006 encode a Nuclear Localization Signal (NLS), nucleotides 1016 to 1036 encode a Nuclear Localization Signal (NLS), nucleotides 1037 to 5161 encode a Cas9 protein, nucleotides 5162 to 5209 encode a Nuclear Localization Signal (NLS), nucleotides 5219 to 5266 encode a Nuclear Localization Signal (NLS), nucleotides 5276 to 5332 encode a self-cleaving polypeptide P2A (the amino acid sequence from the cleaving polypeptide P2A is "ATNFSLLKQAGDVEENPGP", the cleavage site from the cleavage is between the first amino acid residue and the second amino acid residue from the C-terminus), nucleotides 5333 to 6046 encode an EGFP protein, nucleotides 6056 to 6109 encode a self-cleaving polypeptide T2A (the amino acid sequence from the cleaving polypeptide T2A is "EGRGSLLTCGDVEENPGP", the cleavage site from the cleavage site is between the first amino acid residue and the second amino acid residue from the C-terminus), nucleotides 6056 to 6109 encode a self-cleaving polypeptide T2A (the amino acid sequence from the cleavage site T2A is "EGRGSLLTCGDVEENPGP", nucleotides 677647 to 6773, nucleotides) constitute a Pu bug element, and nucleotides 677647, short. SEQ ID NO:2, the 911-6706 th nucleotides form fusion gene to express fusion protein. Due to the presence of the self-cleaving polypeptide P2A and the self-cleaving polypeptide T2A, the fusion protein spontaneously forms the following three proteins: proteins with Cas9 protein, proteins with EGFP protein and proteins with Puro protein.
Compared with plasmid pX330, plasmid pKG-GE3 was mainly modified as follows: (1) residual gRNA framework sequences (GTTTTAGAGCTAGAAATAGCAAGTTAAAATAAGGCTAGTCCGTTTT) are removed, and interference is reduced; (2) the original chicken beta-actin promoter is transformed into an EF1a promoter with higher expression activity, so that the protein expression capacity of the Cas9 gene is increased; (3) a nuclear localization signal coding gene (NLS) is added at the upstream and the downstream of the Cas9 gene, so that the nuclear localization capacity of the Cas9 protein is increased; (4) the original plasmid does not have any eukaryotic cell screening marker, is not beneficial to screening and enriching of positive transformed cells, and is sequentially inserted with a P2A-EGFP-T2A-PURO coding gene at the downstream of a Cas9 gene to endow a carrier with fluorescence and eukaryotic cell resistance screening capacity; (5) WPRE element and 3' LTR sequence element are inserted to enhance protein translation capability of Cas9 gene.
2. Construction of pKG-U6gRNA expression vector
pUC57 is used as a starting plasmid to construct a pKG-U6gRNA vector. The pKG-U6gRNA vector, plasmid pKG-U6gRNA, is schematically shown in FIG. 3, and is a circular plasmid, such as the plasmid shown in patent application 202010084343.6, SEQ ID NO:3, respectively. SEQ ID NO:3, the 2280 th to 2539 th nucleotides form the hU6 promoter, and the 2558 th to 2637 th nucleotides are used for transcription to form a gRNA framework. In use, a DNA molecule of about 20bp (the target sequence binding region for transcription to form a gRNA) is inserted into plasmid pKG-U6gRNA to form a recombinant plasmid, schematically shown in fig. 4, and the recombinant plasmid is transcribed in a cell to obtain a gRNA.
3. Construction of prokaryotic Cas9 high-efficiency expression vector
The structure of plasmid pET-32a is schematically shown in FIG. 5.
The plasmid pKG-GE4 is obtained by modifying a plasmid pET-32a serving as a starting plasmid. Plasmid pET32a-T7lac-phoA SP-TrxA-His-EK-NLS-spCas9-NLS-T7ter (plasmid pKG-GE4 for short) as shown in SEQ ID NO:1, is a circular plasmid, and the structure schematic diagram is shown in figure 6.
SEQ ID NO:1, the 5121-5139 th nucleotides form a T7 promoter, the 5140-5164 th nucleotides form a Lac operator, the 5178-5201 th nucleotides form a Ribosome Binding Site (RBS), the 5209-5271 th nucleotides form an alkaline phosphatase signal peptide (phoA signal peptide), the 5272-5598 th nucleotides form a TrxA protein, the 5620-567 th nucleotides form a His-Tag, the 565656568-5652 th nucleotides form an enterokinase cleavage site (EK cleavage site), the 5656-5670 th nucleotides form a nuclear localization signal, the 5701-9801 th nucleotides form a SPCas9 protein, the 9802-9849 th nucleotides form a nuclear localization signal, and the 9902-9949 th nucleotides form a T7 terminator. The nucleotides encoding the spCas9 protein have been codon optimized for the e.coli BL21 (DE 3) strain.
The main modifications of plasmid pKG-GE4 are as follows: (1) the encoding region of the TrxA protein is reserved, and the TrxA protein can help the expressed target protein to form a disulfide bond and increase the solubility and the activity of the target protein; adding a coding sequence of an alkaline phosphatase signal peptide before a coding region of the TrxA protein, wherein the alkaline phosphatase signal peptide can guide the expressed target protein to be secreted into the periplasmic cavity of the bacteria and can be cut by prokaryotic periplasmic signal peptidase; (2) adding a coding sequence of His-Tag after the coding sequence of the TrxA protein, wherein the His-Tag can be used for enriching the expressed target protein; (3) adding the coding sequence of an enterokinase enzyme cutting site DDDDK (Asp-Asp-Asp-Asp-Lys) at the downstream of the coding sequence of the His-Tag, and removing the His-Tag and the upstream fused TrxA protein by the purified protein under the action of enterokinase; (4) the Cas9 gene which is suitable for being expressed by an escherichia coli BL21 (DE 3) strain after codon optimization is inserted, and meanwhile, the nuclear localization signal coding sequence is added at the upstream and the downstream of the gene, so that the nuclear localization capability of the Cas9 protein purified at the later stage is improved.
The fusion gene in the plasmid pKG-GE4 is shown as SEQ ID NO:1, nucleotides 5209 to 9852 of SEQ ID NO:2 (PRONCN protein). Due to the existence of the alkaline phosphatase signal peptide and the enterokinase enzyme cutting site, the fusion protein is cut by enterokinase enzyme to form SEQ ID NO:3, the protein shown in SEQ ID NO:3 is designated as NCN protein.
Example 2 preparation and purification of NCN protein
1. Inducible expression
1. The plasmid pKG-GE4 was introduced into E.coli BL21 (DE 3) to obtain a recombinant strain.
2. The recombinant strain obtained in step 1 was inoculated into a liquid LB medium containing 100. Mu.g/ml ampicillin and cultured overnight at 37 ℃ with shaking at 200 rpm.
3. Inoculating the bacterial liquid obtained in the step 2 to a liquid LB culture medium, and carrying out shaking culture at 37 ℃ and 230rpm until the bacterial liquid is OD 600nm The value =1.0, isopropyl thiogalactoside (IPTG) was added to the system to give a concentration of 0.5mM, and the system was cultured at 25 ℃ for 12 hours with shaking at 230rpm, and then centrifuged at 4 ℃ for 15 minutes at 10000g, and the cells were collected.
4. The cells obtained in step 3 were washed with PBS buffer.
2. Purification of fusion protein TrxA-His-EK-NLS-spCas9-NLS
1. And (3) adding the crude extraction buffer solution into the thallus obtained in the step one, suspending the thallus, then crushing the thallus by using a homogenizer (1000 par circulation is carried out for three times), then centrifuging for 30min at 4 ℃ at 15000g, collecting supernatant, filtering the supernatant by using a filter membrane with the aperture of 0.22 mu m, and collecting filtrate. In the step, each g of wet-weight thallus is matched with 10ml of crude extraction buffer solution.
Crude extraction buffer: containing 20mM Tris-HCl (pH 8.0), 0.5M NaCl, 5mM Imidazole, 1mM PMSF, and the balance ddH 2 O。
2. The fusion protein was purified by affinity chromatography.
Firstly, balancing a Ni-NTA agarose column by using a balancing solution with 5 column volumes (the flow rate is 1 ml/min); then 50ml of the filtrate obtained in step 1 was loaded (flow rate 0.5-1 ml/min); the column was then washed with 5 column volumes of equilibration solution (flow rate 1 ml/min); the column was then washed with 5 column volumes of buffer (flow rate 1 ml/min) to remove contaminating proteins; then eluting with 10 column volumes of eluent at a flow rate of 0.5-1ml/min, and collecting the solution (90-100 ml) after passing through the column.
Ni-NTA agarose column: kisry, L00250/L00250-C, packing 10ml.
Balance liquid: containing 20mM Tris-HCl (pH 8.0), 0.5M NaCl, 5mM Imidazole, and the balance ddH 2 O。
Buffer solution: containing 20mM Tris-HCl (pH 8.0), 0.5M NaCl, 50mM Imidazole, and the balance ddH 2 O。
Eluent: containing 20mM Tris-HCl (pH 8.0), 0.5M NaCl, 500mM Imidazole, and the balance ddH 2 O。
3. Enzyme digestion of fusion protein TrxA-His-EK-NLS-spCas9-NLS and purification of NCN protein
1. 15ml of the post-column solution collected in step two was concentrated to 200. Mu.l using Amicon ultrafiltration tube (Sigma, UFC9100, capacity 15 ml) and then diluted to 1ml with 25mM Tris-HCl (pH 8.0). 6 ultrafiltration tubes were used to give a total of 6ml.
2. Commercial Recombinant Bovine Enterokinase with a His tag (biologies, C620031, recombinant Bovine Enterokinase Light Chain, his tag, recombinant Bovine Enterokinase Light Chain, his) was added to the solution (about 6 ml) obtained in step 1, and cleaved with an enzyme at 25 ℃ for 16 hours. 2 units of enterokinase are added in the amount of each 50 mug protein.
3. The solution (about 6 ml) that completed step 2 was mixed well with 480. Mu.l of Ni-NTA resin (Kinseri, L00250/L00250-C), spun well for 15min at room temperature, then 7000g was centrifuged for 3min, and the supernatant (4-5.5 ml) was collected.
4. And (3) taking the supernatant obtained in the step (3), concentrating the supernatant to 200 mu l by using an Amicon ultrafiltration tube (Sigma, UFC9100, the volume of which is 15 ml), adding the concentrated solution into an enzyme stock solution, and adjusting the protein concentration to be 5mg/ml to obtain the NCN protein solution.
And (3) sequencing the protein in the NCN protein solution, wherein the 15N-terminal amino acid residues are shown as SEQ ID NO:3, positions 1 to 15, i.e., the NCN protein.
The NCN proteins used in the subsequent examples were all provided by NCN protein solutions.
Enzyme stock solution (ph 7.4): containing 10mM Tris,300mM NaCl,0.1mM EDTA,1mM DTT,50% (by volume) glycerol, and the balance ddH 2 O。
Example 3 Performance of NCN protein
The 2 gRNA targets targeting the TTN gene were selected as follows:
TTN-gRNA1:AGAGCACAGTCAGCCTGGCG;
TTN-gRNA2:CTTCCAGAATTGGATCTCCG。
primers used to identify target fragments comprising grnas in the TTN gene were as follows:
TTN-F55:TACGGAATTGGGGAGCCAGCGGA;
TTN-R560:CAAAGTTAACTCTCTGTGTCT。
1. preparation of gRNA
1. Preparing TTN-T7-gRNA1 transcription template and TTN-T7-gRNA2 transcription template
The TTN-T7-gRNA1 transcription template is a double-stranded DNA molecule, and is shown as SEQ ID NO:4, respectively.
The TTN-T7-gRNA2 transcription template is a double-stranded DNA molecule, and is shown as SEQ ID NO:5, respectively.
2. In vitro transcription to obtain gRNA
Taking TTN-T7-gRNA1 transcription template, adopting Transcript Aid T7 HigIn vitro Transcription was performed with the Yield Transcription Kit (Fermentas, K0441), followed by MEGA clear TM The Transcription Clean-Up Kit (Thermo, AM 1908) was recovered and purified to obtain TTN-gRNA1.TTN-gRNA1 is single-stranded RNA, shown in SEQ ID NO: and 6, respectively.
Taking TTN-T7-gRNA2 Transcription template, adopting a Transcription Aid T7 High Yield Transcription Kit (Fermentas, K0441) to carry out in vitro Transcription, and then using MEGA clear TM The Transcription Clean-Up Kit (Thermo, AM 1908) was recovered and purified to obtain TTN-gRNA2.TTN-gRNA2 is a single-stranded RNA, as shown in SEQ ID NO: shown at 7.
2. gRNA and NCN protein dosage ratio optimization
1. Co-transfected primary porcine fibroblasts
A first group: co-transfecting primary pig fibroblasts with TTN-gRNA1, TTN-gRNA2 and NCN protein. Proportioning: about 10 million porcine primary fibroblasts: 0.5 μ g TTN-gRNA1:0.5 μ g TTN-gRNA2: mu.g NCN protein.
Second group: co-transfecting the porcine primary fibroblasts with TTN-gRNA1, TTN-gRNA2 and NCN proteins. Proportioning: about 10 ten thousand porcine primary fibroblasts: 0.75 μ g TTN-gRNA1:0.75 μ g TTN-gRNA2: mu.g NCN protein.
Third group: co-transfecting the porcine primary fibroblasts with TTN-gRNA1, TTN-gRNA2 and NCN proteins. Proportioning: about 10 million porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2: mu.g NCN protein.
And a fourth group: co-transfecting the porcine primary fibroblasts with TTN-gRNA1, TTN-gRNA2 and NCN proteins. Proportioning: about 10 million porcine primary fibroblasts: 1.25 μ g TTN-gRNA1:1.25 μ g TTN-gRNA2: mu.g NCN protein.
A fifth group: co-transfecting TTN-gRNA1 and TTN-gRNA2 to a porcine primary fibroblast. Proportioning: about 10 ten thousand porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2.
Co-transfection was performed by electroporation using a mammalian nuclear transfection kit (Neon kit, thermofeisher) and a Neon TM transfection system electrotransfer instrument (parameters set at 1450V, 10ms, 3 pulses).
2. After step 1, the culture is carried out for 12 to 18 hours by using the complete culture solution, and then the culture is carried out by replacing the complete culture solution with a new one. The total time of incubation after electroporation was 48 hours.
3. After completion of step 2, cells were digested with trypsin and collected, genomic DNA was extracted, PCR amplified using a primer pair consisting of TTN-F55 and TTN-R560, and then subjected to 1% agarose gel electrophoresis.
The electrophoretogram is shown in FIG. 7. The 505bp band is a wild-type band (WT), and the about 254bp band (the wild-type band is 505bp theoretically deleted by 251 bp) is a deletion mutant band (MT).
Gene deletion mutation efficiency = (MT grayscale/MT band bp number)/(WT grayscale/WT band bp number + MT grayscale/MT band bp number) × 100%. The deletion mutation efficiency of the first group of genes is 19.9 percent, the deletion mutation efficiency of the second group of genes is 39.9 percent, the deletion mutation efficiency of the third group of genes is 79.9 percent, and the deletion mutation efficiency of the fourth group of genes is 44.3 percent. The fifth group was not mutated.
The result shows that when the mass ratio of the two gRNAs to the NLS-spCas9-NLS protein is 1:1:4, the actual dosage is 1 mu g:1 μ g: the gene editing efficiency is highest at 4 mug. Thus, the optimal amount of two grnas and NCN proteins was determined to be 1 μ g:1 μ g:4 μ g.
3. Comparison of Gene editing efficiency of NCN protein with that of the commercial Cas9 protein
1. Co-transfected primary porcine fibroblasts
Cas9-a group: co-transfecting TTN-gRNA1, TTN-gRNA2 and a commercial Cas9-A protein to a porcine primary fibroblast. Proportioning: about 10 million porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2:4 μ g Cas9-A protein.
pKG-GE4 group: co-transfecting primary pig fibroblasts with TTN-gRNA1, TTN-gRNA2 and NCN protein. Proportioning: about 10 ten thousand porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2: mu.g NCN protein.
Cas9-B set: co-transfecting the TTN-gRNA1, the TTN-gRNA2 and a commercial Cas9-B protein into a pig primary fibroblast. Proportioning: about 10 ten thousand porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2:4 μ g Cas9-B protein.
Control group: co-transfecting the TTN-gRNA1 and the TTN-gRNA2 to the pig primary fibroblasts. Proportioning: about 10 million porcine primary fibroblasts: 1 μ g TTN-gRNA1:1 μ g TTN-gRNA2.
Co-transfection was performed by electroporation using a mammalian nuclear transfection kit (Neon kit, thermofeisher) and a Neon TM transfection system electrotransfer instrument (parameters set at 1450V, 10ms, 3 pulses).
2. After the completion of step 1, the culture is carried out for 12 to 18 hours by using the complete culture solution, and then the culture is carried out by replacing with a new complete culture solution. The total time of incubation after electroporation was 48 hours.
3. After completion of step 2, cells were digested with trypsin and collected, genomic DNA was extracted, PCR amplified using a primer pair consisting of TTN-F55 and TTN-R560, and then subjected to 1% agarose gel electrophoresis.
The electrophoretogram is shown in FIG. 8. The gene deletion mutation efficiency with the commercial Cas9-a protein was 28.5%, the gene deletion mutation efficiency with the NCN protein was 85.6%, and the gene deletion mutation efficiency with the commercial Cas9-B protein was 16.6%.
The result shows that compared with the Cas9 protein which adopts a commodity, the NCN protein prepared by the invention can obviously improve the gene editing efficiency.
Example 4 screening of high-efficiency gRNA target of SOD1 Gene
Pig SOD1 gene information: encoding superoxide dismutase 1; is located on chromosome 13; geneID is 393976 (Sus scrofa). The amino acid sequence coded by the pig SOD1 gene is shown as SEQ ID NO: shown in fig. 8. In the genome DNA, the pig SOD1 gene has 16 exons, and it is confirmed that G85R and G93A in SOD1 mutation research related to human ALS correspond to pig exon 4. In the pig genome DNA, the partial sequence (containing 3 rd exon, 3 rd intron, 4 th exon and partial 4 th intron) of the SOD1 gene is shown as SEQ ID NO: shown at 9.
1. Conservation analysis of preset point mutation site and adjacent genome sequence of SOD1 gene
18 newborn Jiangxiang pigs, 10 females (named 1, 2, 3, 4, 5, 6, 7, 8, 9 and 10 respectively) and 8 males (named A, B, C, D, E, F, G, H respectively).
SOD1-E4g-JDF50:TCAGAATGTTGCCGTTCTGGA;
SOD1-E4g-JDR540:CGCAGCAGAACAGTGTTCTTA;
SOD1-E4g-JDF121:TAGATTATCTGACTCAGTCCA;
SOD1-E4g-JDR505:CATTCTTCGCTACAATCATTC。
The porcine ear tissue designated 1 was used to extract the genome as a template, PCR amplified with different primer pairs, and then subjected to 1% agarose gel electrophoresis. The electrophoretogram is shown in FIG. 9. In fig. 9: group 1: SOD1-E4g-JDF50/SOD1-E4g-JDR505; group 2: SOD1-E4g-JDF50/SOD1-E4g-JDR540; group 3: SOD1-E4g-JDF121/SOD1-E4g-JDR505; group 4: SOD1-E4g-JDF121/SOD1-E4g-JDR540. As a result, it is preferable to amplify the target fragment using a primer pair consisting of SOD1-E4g-JDF50 and SOD1-E4g-JDR540.
The genomic DNA of 18 pigs was used as templates, and PCR amplification was performed using a primer pair consisting of SOD1-E4g-JDF50 and SOD1-E4g-JDR540, followed by 1% agarose gel electrophoresis. The electrophoretogram is shown in FIG. 10. And recovering PCR amplification products, sequencing, and comparing and analyzing the sequencing result with the SOD1 gene sequence in the public database. A common conserved region in 18 pigs is selected for designing a gRNA target.
2. Screening target spots
And (3) primarily screening a plurality of targets by screening NGG (avoiding possible mutation sites), and further screening 6 targets from the NGG through a preliminary experiment.
The 6 targets were as follows:
SOD1-E4-gRNA1:AGAATCTTCGATGTACACAG;
SOD1-E4-gRNA2:GACTGCTGGCAAAGATGGTG;
SOD1-E4-gRNA3:TGCCAGCAGTCACATTGCCC;
SOD1-E4-gRNA4:GACCTGGGCAATGTGACTGC;
SOD1-E4-gRNA5:TGATGGAATGGTCTCCCGAG;
SOD1-E4-gRNA6:GTTTTCACCGTCAGGCACGT。
3. preparation of recombinant plasmid
The plasmid pKG-U6gRNA was digested with the restriction enzyme BbsI, and the vector backbone (approximately 3kb linear large fragment) was recovered.
SOD1-E4-gRNA1-S and SOD1-E4-gRNA1-A are respectively synthesized, and then mixed and annealed to obtain double-stranded DNA molecules with sticky ends. A double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 1). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 1) expresses the nucleic acid sequence of SEQ ID NO:10 sgRNA SOD1-E4-gRNA1
sgRNA SOD1-E4-gRNA1 (SEQ ID NO:10):
AGAAUCUUCGAUGUACACAGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA2-S and SOD1-E4-gRNA2-A are respectively synthesized, and then are mixed and annealed to obtain double-stranded DNA molecules with sticky ends. The double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 2). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 2) expresses the nucleic acid sequence of SEQ ID NO:11 sgRNA SOD1-E4-gRNA2
sgRNA SOD1-E4-gRNA2 (SEQ ID NO:11):
GACUGCUGGCAAAGAUGGUGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA3-S and SOD1-E4-gRNA3-A are respectively synthesized, and then mixed and annealed to obtain double-stranded DNA molecules with sticky ends. The double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 3). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 3) expresses the nucleic acid sequence of SEQ ID NO:12 sgRNA SOD1-E4-gRNA3
sgRNA SOD1-E4-gRNA3 (SEQ ID NO:12):
UGCCAGCAGUCACAUUGCCCguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA4-S and SOD1-E4-gRNA4-A are respectively synthesized, and then mixed and annealed to obtain double-stranded DNA molecules with sticky ends. A double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 4). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 4) expresses SEQ ID NO:13 sgRNA SOD1-E4-gRNA4
sgRNA SOD1-E4-gRNA4 (SEQ ID NO:13):
GACCUGGGCAAUGUGACUGCguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA5-S and SOD1-E4-gRNA5-A are respectively synthesized, and then mixed and annealed to obtain double-stranded DNA molecules with sticky ends. A double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 5). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 5) expresses the nucleic acid sequence of SEQ ID NO:14 sgRNA SOD1-E4-gRNA5
sgRNA SOD1-E4-gRNA5 (SEQ ID NO:14):
UGAUGGAAUGGUCUCCCGAGguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA6-S and SOD1-E4-gRNA6-A are respectively synthesized, and then are mixed and annealed to obtain double-stranded DNA molecules with sticky ends. The double-stranded DNA molecule having a cohesive end was ligated to a vector backbone to obtain a plasmid pKG-U6gRNA (SOD 1-E4-gRNA 6). Plasmid pKG-U6gRNA (SOD 1-E4-gRNA 6) expresses the plasmid SEQ ID NO:15 sgRNA SOD1-E4-gRNA6
sgRNA SOD1-E4-gRNA6 (SEQ ID NO:15):
GUUUUCACCGUCAGGCACGUguuuuagagcuagaaauagcaaguuaaaauaaggcuaguccguuaucaacuugaaaaagu ggcaccgagucggugcuuuu。
SOD1-E4-gRNA1-S:caccgAGAATCTTCGATGTACACAG;
SOD1-E4-gRNA1-A:aaacCTGTGTACATCGAAGATTCTc。
SOD1-E4-gRNA2-S:caccGACTGCTGGCAAAGATGGTG;
SOD1-E4-gRNA2-A:aaacCACCATCTTTGCCAGCAGTC。
SOD1-E4-gRNA3-S:caccgTGCCAGCAGTCACATTGCCC;
SOD1-E4-gRNA3-A:aaacGGGCAATGTGACTGCTGGCAc。
SOD1-E4-gRNA4-S:caccGACCTGGGCAATGTGACTGC;
SOD1-E4-gRNA4-A:aaacGCAGTCACATTGCCCAGGTC。
SOD1-E4-gRNA5-S:caccgTGATGGAATGGTCTCCCGAG;
SOD1-E4-gRNA5-A:aaacCTCGGGAGACCATTCCATCAc。
SOD1-E4-gRNA6-S:caccGTTTTCACCGTCAGGCACGT;
SOD1-E4-gRNA6-A:aaacACGTGCCTGACGGTGAAAAC。
SOD1-E4-gRNA1-S, SOD1-E4-gRNA1-A, SOD1-E4-gRNA2-S, SOD-E4-gRNA 2-A, SOD1-E4-gRNA3-S, SOD1-E4-gRNA3-A, SOD1-E4-gRNA4-S, SOD1-E4-gRNA4-A, SOD-E4-gRNA 5-S, SOD1-E4-gRNA5-A, SOD-E4-gRNA 6-S, SOD-E4-gRNA 6-A are single-stranded DNA molecules.
4. Comparison of editing efficiency at different targets
1. Cotransfection
A first group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 1) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 million porcine primary fibroblasts: 0.92 μ g plasmid pKG-U6gRNA (SOD 1-E4-gRNA 1): 1.08. Mu.g of plasmid pKG-GE3.
Second group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 2) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 ten thousand porcine primary fibroblasts: 0.92 μ g plasmid pKG-U6gRNA (SOD 1-E4-gRNA 2): 1.08. Mu.g of plasmid pKG-GE3.
Third group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 3) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 million porcine primary fibroblasts: 0.92 μ g plasmid pKG-U6gRNA (SOD 1-E4-gRNA 3): 1.08. Mu.g of plasmid pKG-GE3.
And a fourth group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 4) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 million porcine primary fibroblasts: 0.92 μ g plasmid pKG-U6gRNA (SOD 1-E4-gRNA 4): 1.08. Mu.g of plasmid pKG-GE3.
And a fifth group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 5) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 million porcine primary fibroblasts: 0.92 μ g plasmid pKG-U6gRNA (SOD 1-E4-gRNA 5): 1.08. Mu.g of plasmid pKG-GE3.
A sixth group: the plasmid pKG-U6gRNA (SOD 1-E4-gRNA 6) and the plasmid pKG-GE3 were co-transfected into porcine primary fibroblasts. Proportioning: about 20 million porcine primary fibroblasts: 0.92. Mu.g of plasmid pKG-U6gRNA (SOD 1-E4-gRNA 6): 1.08. Mu.g of plasmid pKG-GE3.
A seventh group: carrying out electrotransformation operation on primary pig fibroblasts with the same electrotransformation parameters and without plasmids.
Co-transfection was performed by electroporation using a mammalian nuclear transfection kit (Neon kit, thermofeisher) and a Neon TM transfection system electrotransfer instrument (parameters set at 1450V, 10ms, 3 pulses).
2. After step 1, the culture is carried out for 12 to 18 hours by using the complete culture solution, and then the culture is carried out by replacing the complete culture solution with a new one. The total time of incubation after electroporation was 48 hours.
3. After step 2 was completed, cells were digested and collected with trypsin, lysed, genomic DNA was extracted, PCR amplified using a primer pair consisting of SOD1-E4g-JDF50 and SOD1-E4g-JDR540, and then subjected to 1% agarose gel electrophoresis. And detecting the mutation condition of the target gene of the cell, wherein the length of the target PCR product is 490bp. The electrophoretogram is shown in FIG. 11.
And cutting and recovering the target product, sending the target product to a sequencing company for sequencing, and analyzing a sequencing peak map by using a webpage version Synthego ICE tool to obtain the gene editing efficiency of different targets. The gene editing efficiencies of the first to sixth groups were 62%, 28%, 10%, 19%, 9%, and 59%, in this order. No gene editing occurred in group seven. The results show that the editing efficiency of SOD1-E4-gRNA1 and SOD1-E4-gRNA6 is higher.
Example 5 preparation of SOD1 Gene-editing monoclonal cells by somatic cloning
Two high-efficiency gRNA targets screened in example 4 were selected.
1. Preparation of gRNA
1. Preparing SOD1-T7-gRNA1 transcription template and SOD1-T7-gRNA6 transcription template
The SOD1-T7-gRNA1 transcription template is a double-stranded DNA molecule, and is shown as SEQ ID NO: shown at 16.
The SOD1-T7-gRNA6 transcription template is a double-stranded DNA molecule, and is shown as SEQ ID NO: shown at 17.
2. In vitro transcription to obtain gRNA
Taking SOD1-T7-gRNA1 Transcription template, adopting a Transcription Aid T7 High Yield Transcription Kit (Fermentas, K0441) to carry out in vitro Transcription, and then using MEGA clear TM SOD1-gRNA1 was obtained by recovering and purifying the Transcription Clean-Up Kit (Thermo, AM 1908). SOD1-gRNA1 is single-stranded RNA, and is shown in SEQ ID NO:18, respectively.
Taking SOD1-T7-gRNA6 Transcription template, adopting a Transcription Aid T7 High Yield Transcription Kit (Fermentas, K0441) to carry out in vitro Transcription, and then using MEGA clear TM SOD1-gRNA6 was obtained by recovering and purifying the Transcription Clean-Up Kit (Thermo, AM 1908). SOD1-gRNA6 is single-stranded RNA, and is shown in SEQ ID NO:19, respectively.
2. Synthesis of Single-stranded Donor DNA containing SOD1 mutation site
Synthesizing single-stranded DNA corresponding to the amino acid mutation of the human SOD 1G 85R and G93A as Donor DNA, wherein the single-stranded DNA also contains SOD1-E4-gRNA1 and SOD1-E4-gRNA6 target PAM or 3' end sequence synonymy mutation adjacent to the PAM besides the target site mutation. The single-stranded Donor DNA was named SOD1-mutant-ss160.
SOD1-mutant-ss160 is shown in SEQ ID NO: shown at 20.
3. Transfection of porcine primary fibroblasts
1. Co-transfecting the SOD1-gRNA1, the SOD1-gRNA6, the SOD1-mutant-ss160 and the NCN protein into primary pig fibroblasts. Proportioning: about 10 million porcine primary fibroblasts: 1 μ g SOD1-gRNA1:1 μ g SOD1-gRNA6: 2. Mu.g of SOD1-mutant-ss160: mu.g NCN protein. Co-transfection was performed by electroporation using a mammalian nuclear transfection kit (Neon kit, thermofeisher) and a Neon TM transfection system electrotransfer instrument (parameters set at 1450V, 10ms, 3 pulses).
2. After step 1, the culture is carried out for 16 to 18 hours by using the complete culture solution, and then the culture is carried out by replacing the complete culture solution with a new one. The total time of incubation after electroporation was 48 hours.
3. After completion of step 2, cells were trypsinized and collected, then washed with complete medium, then resuspended with complete medium, and then each individual monoclonal was picked up and transferred to a 96-well plate (1 cell per well with 100. Mu.l of complete medium per well) for 2 weeks (replacement of new complete medium every 2-3 days).
4. After completion of step 3, cells were trypsinized and harvested (approximately 2/3 of the resulting cells per well were plated into 6-well plates containing complete medium, and the remaining 1/3 were harvested in 1.5mL centrifuge tubes).
5. The 6-well plate of step 4 was taken, cultured until the cells grew to 80% confluency, trypsinized and collected, and the cells were cryopreserved using cell cryopreserving (90% complete medium +10% dmso by volume).
6. And (4) taking the centrifuge tube in the step (4), taking the cells, carrying out cell lysis and extracting genome DNA, carrying out PCR amplification by adopting a primer pair consisting of SOD1-E4g-JDF50 and SOD1-E4g-JDR540, and then carrying out electrophoresis. Porcine primary fibroblasts were used as wild type controls. The electrophoretogram is shown in FIG. 12. Lane numbers in fig. 12 are consistent with cell numbers in table 1.
7. After completion of step 6, the PCR amplification product was recovered and sequenced.
The sequencing result of the primary pig fibroblast is only one, and the genotype of the primary pig fibroblast is homozygous wild type. If the sequencing result of a certain monoclonal cell has two types, one type is consistent with the sequencing result of the pig primary fibroblast, and the other type has mutation (mutation comprises deletion, insertion or substitution of one or more nucleotides) compared with the sequencing result of the pig primary fibroblast, the genotype of the monoclonal cell is heterozygote; if the sequencing result of a certain monoclonal cell is two types, the two types of the sequencing results are mutated (the mutation comprises deletion, insertion or substitution of one or more nucleotides) compared with the sequencing result of the pig primary fibroblast, and the genotype of the monoclonal cell is a biallelic different mutant type; if the sequencing result of a certain monoclonal cell is one and mutation (mutation comprises deletion, insertion or substitution of one or more nucleotides) is generated compared with the sequencing result of the pig primary fibroblast, the genotype of the monoclonal cell is a biallelic gene identical mutant; if the sequencing result of a certain monoclonal cell is one and is consistent with the sequencing result of the pig primary fibroblast, the genotype of the monoclonal cell is a homozygous wild type.
The results are shown in Table 1. The genotypes of the single cell clones numbered 2, 14, 15, 22, 40 were homozygous wild-types. The genotypes of the single cell clones numbered 3, 8, 9, 11, 16, 17, 18, 23, 25, 28, 30, 32, 34, 37, 39 were heterozygous. The genotypes of the single cell clones numbered 4, 12, 21, 24, 26, 33, 36, 38 are biallelic different mutants. The genotypes of the single cell clones numbered 1, 5, 6, 7, 10, 13, 19, 20, 27, 29, 31, 35 are biallelic and identical mutants. Wherein, the single cell clones of 9, 16, 18, 25 and 39 are heterozygote type of target site point mutation (namely, one of the two homologous chromosomes completes the replacement of single-chain Donor DNA, and the other is wild type), and the single cell clones of 1, 6, 29, 31 and 35 are biallelic mutation type of target site point mutation (namely, both homologous chromosomes complete the replacement of single-chain Donor DNA). The ratio of single-cell clones with the SOD1 gene editing was 87.5%, and the ratio of single-cell clones with the target site point mutation was 25%.
Exemplary sequencing alignments are shown in figures 13 to 18. FIG. 13 shows the comparison of the reverse sequencing of clone No. SOD1-ss160-2 with the mutant sequence at the target site, which is wild type. FIG. 14 shows the result of comparing the reverse sequencing of clone No. SOD1-ss160-3 with the target site mutant sequence, which is a heterozygous mutant. FIG. 15 shows the results of comparison of the mutant sequences of SOD1-ss160-21 clone numbers with the target site mutation sequence, which are homozygous mutants of different biallelic variations. FIG. 16 shows the result of comparison between the reverse sequencing of clone No. SOD1-ss160-10 and the target site mutation sequence, which is a homozygous mutant with the same variation in both alleles. FIG. 17 shows the result of comparison of the reverse sequencing of clone No. SOD1-ss160-25 with the target site mutation sequence, which is a heterozygous mutant for the target site mutation. FIG. 18 shows the result of comparison between the reverse sequencing of clone No. SOD1-ss160-1 and the target site mutation sequence, which is a homozygous mutant for the target site point mutation.
TABLE 1 genotype determination of single cell clones with SOD1 gene point mutations
Figure BDA0003077178300000161
Figure BDA0003077178300000171
Figure BDA0003077178300000181
Note: target site mutation means that the replacement of single-stranded Donor DNA is completed; namely, the nucleotide sequence shown in SEQ ID NO:20 replaces the DNA molecule shown in SEQ ID NO: 21.
The present invention has been described in detail above. It will be apparent to those skilled in the art that the invention can be practiced in a wide range of equivalent parameters, concentrations, and conditions without departing from the spirit and scope of the invention and without undue experimentation. While the invention has been described with reference to specific embodiments, it will be appreciated that the invention can be further modified. In general, this application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure as come within known or customary practice within the art to which the invention pertains. The use of some of the essential features is possible within the scope of the claims attached below.
Sequence listing
<110> Nanjing King Gene engineering Co., ltd
<120> gene editing system for constructing ALS model pig nuclear transfer donor cell with SOD1 gene mutation and application thereof
<130> GNCYX210910
<160> 21
<170> SIPOSequenceListing 1.0
<210> 1
<211> 9974
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 1
tggcgaatgg gacgcgccct gtagcggcgc attaagcgcg gcgggtgtgg tggttacgcg 60
cagcgtgacc gctacacttg ccagcgccct agcgcccgct cctttcgctt tcttcccttc 120
ctttctcgcc acgttcgccg gctttccccg tcaagctcta aatcgggggc tccctttagg 180
gttccgattt agtgctttac ggcacctcga ccccaaaaaa cttgattagg gtgatggttc 240
acgtagtggg ccatcgccct gatagacggt ttttcgccct ttgacgttgg agtccacgtt 300
ctttaatagt ggactcttgt tccaaactgg aacaacactc aaccctatct cggtctattc 360
ttttgattta taagggattt tgccgatttc ggcctattgg ttaaaaaatg agctgattta 420
acaaaaattt aacgcgaatt ttaacaaaat attaacgttt acaatttcag gtggcacttt 480
tcggggaaat gtgcgcggaa cccctatttg tttatttttc taaatacatt caaatatgta 540
tccgctcatg agacaataac cctgataaat gcttcaataa tattgaaaaa ggaagagtat 600
gagtattcaa catttccgtg tcgcccttat tccctttttt gcggcatttt gccttcctgt 660
ttttgctcac ccagaaacgc tggtgaaagt aaaagatgct gaagatcagt tgggtgcacg 720
agtgggttac atcgaactgg atctcaacag cggtaagatc cttgagagtt ttcgccccga 780
agaacgtttt ccaatgatga gcacttttaa agttctgcta tgtggcgcgg tattatcccg 840
tattgacgcc gggcaagagc aactcggtcg ccgcatacac tattctcaga atgacttggt 900
tgagtactca ccagtcacag aaaagcatct tacggatggc atgacagtaa gagaattatg 960
cagtgctgcc ataaccatga gtgataacac tgcggccaac ttacttctga caacgatcgg 1020
aggaccgaag gagctaaccg cttttttgca caacatgggg gatcatgtaa ctcgccttga 1080
tcgttgggaa ccggagctga atgaagccat accaaacgac gagcgtgaca ccacgatgcc 1140
tgcagcaatg gcaacaacgt tgcgcaaact attaactggc gaactactta ctctagcttc 1200
ccggcaacaa ttaatagact ggatggaggc ggataaagtt gcaggaccac ttctgcgctc 1260
ggcccttccg gctggctggt ttattgctga taaatctgga gccggtgagc gtgggtctcg 1320
cggtatcatt gcagcactgg ggccagatgg taagccctcc cgtatcgtag ttatctacac 1380
gacggggagt caggcaacta tggatgaacg aaatagacag atcgctgaga taggtgcctc 1440
actgattaag cattggtaac tgtcagacca agtttactca tatatacttt agattgattt 1500
aaaacttcat ttttaattta aaaggatcta ggtgaagatc ctttttgata atctcatgac 1560
caaaatccct taacgtgagt tttcgttcca ctgagcgtca gaccccgtag aaaagatcaa 1620
aggatcttct tgagatcctt tttttctgcg cgtaatctgc tgcttgcaaa caaaaaaacc 1680
accgctacca gcggtggttt gtttgccgga tcaagagcta ccaactcttt ttccgaaggt 1740
aactggcttc agcagagcgc agataccaaa tactgtcctt ctagtgtagc cgtagttagg 1800
ccaccacttc aagaactctg tagcaccgcc tacatacctc gctctgctaa tcctgttacc 1860
agtggctgct gccagtggcg ataagtcgtg tcttaccggg ttggactcaa gacgatagtt 1920
accggataag gcgcagcggt cgggctgaac ggggggttcg tgcacacagc ccagcttgga 1980
gcgaacgacc tacaccgaac tgagatacct acagcgtgag ctatgagaaa gcgccacgct 2040
tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa caggagagcg 2100
cacgagggag cttccagggg gaaacgcctg gtatctttat agtcctgtcg ggtttcgcca 2160
cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc tatggaaaaa 2220
cgccagcaac gcggcctttt tacggttcct ggccttttgc tggccttttg ctcacatgtt 2280
ctttcctgcg ttatcccctg attctgtgga taaccgtatt accgcctttg agtgagctga 2340
taccgctcgc cgcagccgaa cgaccgagcg cagcgagtca gtgagcgagg aagcggaaga 2400
gcgcctgatg cggtattttc tccttacgca tctgtgcggt atttcacacc gcatatatgg 2460
tgcactctca gtacaatctg ctctgatgcc gcatagttaa gccagtatac actccgctat 2520
cgctacgtga ctgggtcatg gctgcgcccc gacacccgcc aacacccgct gacgcgccct 2580
gacgggcttg tctgctcccg gcatccgctt acagacaagc tgtgaccgtc tccgggagct 2640
gcatgtgtca gaggttttca ccgtcatcac cgaaacgcgc gaggcagctg cggtaaagct 2700
catcagcgtg gtcgtgaagc gattcacaga tgtctgcctg ttcatccgcg tccagctcgt 2760
tgagtttctc cagaagcgtt aatgtctggc ttctgataaa gcgggccatg ttaagggcgg 2820
ttttttcctg tttggtcact gatgcctccg tgtaaggggg atttctgttc atgggggtaa 2880
tgataccgat gaaacgagag aggatgctca cgatacgggt tactgatgat gaacatgccc 2940
ggttactgga acgttgtgag ggtaaacaac tggcggtatg gatgcggcgg gaccagagaa 3000
aaatcactca gggtcaatgc cagcgcttcg ttaatacaga tgtaggtgtt ccacagggta 3060
gccagcagca tcctgcgatg cagatccgga acataatggt gcagggcgct gacttccgcg 3120
tttccagact ttacgaaaca cggaaaccga agaccattca tgttgttgct caggtcgcag 3180
acgttttgca gcagcagtcg cttcacgttc gctcgcgtat cggtgattca ttctgctaac 3240
cagtaaggca accccgccag cctagccggg tcctcaacga caggagcacg atcatgcgca 3300
cccgtggggc cgccatgccg gcgataatgg cctgcttctc gccgaaacgt ttggtggcgg 3360
gaccagtgac gaaggcttga gcgagggcgt gcaagattcc gaataccgca agcgacaggc 3420
cgatcatcgt cgcgctccag cgaaagcggt cctcgccgaa aatgacccag agcgctgccg 3480
gcacctgtcc tacgagttgc atgataaaga agacagtcat aagtgcggcg acgatagtca 3540
tgccccgcgc ccaccggaag gagctgactg ggttgaaggc tctcaagggc atcggtcgag 3600
atcccggtgc ctaatgagtg agctaactta cattaattgc gttgcgctca ctgcccgctt 3660
tccagtcggg aaacctgtcg tgccagctgc attaatgaat cggccaacgc gcggggagag 3720
gcggtttgcg tattgggcgc cagggtggtt tttcttttca ccagtgagac gggcaacagc 3780
tgattgccct tcaccgcctg gccctgagag agttgcagca agcggtccac gctggtttgc 3840
cccagcaggc gaaaatcctg tttgatggtg gttaacggcg ggatataaca tgagctgtct 3900
tcggtatcgt cgtatcccac taccgagatg tccgcaccaa cgcgcagccc ggactcggta 3960
atggcgcgca ttgcgcccag cgccatctga tcgttggcaa ccagcatcgc agtgggaacg 4020
atgccctcat tcagcatttg catggtttgt tgaaaaccgg acatggcact ccagtcgcct 4080
tcccgttccg ctatcggctg aatttgattg cgagtgagat atttatgcca gccagccaga 4140
cgcagacgcg ccgagacaga acttaatggg cccgctaaca gcgcgatttg ctggtgaccc 4200
aatgcgacca gatgctccac gcccagtcgc gtaccgtctt catgggagaa aataatactg 4260
ttgatgggtg tctggtcaga gacatcaaga aataacgccg gaacattagt gcaggcagct 4320
tccacagcaa tggcatcctg gtcatccagc ggatagttaa tgatcagccc actgacgcgt 4380
tgcgcgagaa gattgtgcac cgccgcttta caggcttcga cgccgcttcg ttctaccatc 4440
gacaccacca cgctggcacc cagttgatcg gcgcgagatt taatcgccgc gacaatttgc 4500
gacggcgcgt gcagggccag actggaggtg gcaacgccaa tcagcaacga ctgtttgccc 4560
gccagttgtt gtgccacgcg gttgggaatg taattcagct ccgccatcgc cgcttccact 4620
ttttcccgcg ttttcgcaga aacgtggctg gcctggttca ccacgcggga aacggtctga 4680
taagagacac cggcatactc tgcgacatcg tataacgtta ctggtttcac attcaccacc 4740
ctgaattgac tctcttccgg gcgctatcat gccataccgc gaaaggtttt gcgccattcg 4800
atggtgtccg ggatctcgac gctctccctt atgcgactcc tgcattagga agcagcccag 4860
tagtaggttg aggccgttga gcaccgccgc cgcaaggaat ggtgcatgca aggagatggc 4920
gcccaacagt cccccggcca cggggcctgc caccataccc acgccgaaac aagcgctcat 4980
gagcccgaag tggcgagccc gatcttcccc atcggtgatg tcggcgatat aggcgccagc 5040
aaccgcacct gtggcgccgg tgatgccggc cacgatgcgt ccggcgtaga ggatcgagat 5100
cgatctcgat cccgcgaaat taatacgact cactataggg gaattgtgag cggataacaa 5160
ttcccctcta gaaataattt tgtttaactt taagaaggag atatacatat gaaacaaagc 5220
actattgcac tggcactctt accgttactg tttacccctg tgacaaaagc catgagcgat 5280
aaaattattc acctgactga cgacagtttt gacacggatg tactcaaagc ggacggggcg 5340
atcctcgtcg atttctgggc agagtggtgc ggtccgtgca aaatgatcgc cccgattctg 5400
gatgaaatcg ctgacgaata tcagggcaaa ctgaccgttg caaaactgaa catcgatcaa 5460
aaccctggca ctgcgccgaa atatggcatc cgtggtatcc cgactctgct gctgttcaaa 5520
aacggtgaag tggcggcaac caaagtgggt gcactgtcta aaggtcagtt gaaagagttc 5580
ctcgacgcta acctggccgg ttctggttct ggccatatgc accatcatca tcatcatgac 5640
gatgacgata agatgcccaa aaagaaacga aaggtgggta tccacggagt cccagcagcc 5700
gacaaaaaat atagcatcgg cctggacatc ggtaccaaca gcgttggctg ggcagtgatc 5760
actgatgaat acaaagttcc atccaaaaaa tttaaagtac tgggcaacac cgaccgtcac 5820
tctatcaaaa aaaacctgat tggtgctctg ctgtttgaca gcggcgaaac tgctgaggct 5880
acccgtctga aacgtacggc tcgccgtcgc tacactcgtc gtaaaaaccg catctgttat 5940
ctgcaggaaa ttttctctaa cgaaatggca aaagttgatg atagcttctt tcatcgtctg 6000
gaagagagct tcctggtgga agaagataaa aaacacgaac gtcacccgat tttcggtaac 6060
attgtggatg aggttgccta ccacgagaaa tatccgacca tctaccatct gcgtaaaaaa 6120
ctggttgata gcactgacaa agcggatctg cgtctgatct acctggctct ggcacacatg 6180
atcaaattcc gtggtcactt cctgatcgaa ggtgatctga accctgataa ctccgacgtg 6240
gacaaactgt tcattcagct ggttcagacc tataaccagc tgttcgaaga aaacccgatc 6300
aacgcgtccg gtgtagacgc taaggcaatt ctgtctgcgc gtctgtctaa gtctcgtcgt 6360
ctggaaaacc tgattgcgca actgccaggt gaaaagaaaa acggcctgtt cggcaatctg 6420
atcgccctgt ccctgggtct gactccgaac tttaaatcca actttgacct ggcggaagat 6480
gccaagctgc agctgagcaa agatacctat gacgatgacc tggataacct gctggcacag 6540
atcggtgatc agtatgccga tctgttcctg gccgcgaaaa acctgtctga tgcgattctg 6600
ctgtctgata tcctgcgcgt taacactgaa attactaaag cgccgctgag cgcatccatg 6660
attaaacgtt acgatgaaca ccaccaggat ctgaccctgc tgaaagcgct ggtgcgtcag 6720
cagctgccgg aaaaatacaa ggagatcttc ttcgaccaga gcaaaaacgg ttacgcgggc 6780
tacattgatg gtggtgcatc tcaggaggaa ttctacaaat tcattaaacc gatcctggaa 6840
aaaatggatg gtactgaaga gctgctggtt aaactgaatc gtgaagatct gctgcgcaaa 6900
cagcgtacct tcgataacgg ttccatcccg catcagattc atctgggcga actgcacgct 6960
atcctgcgcc gtcaggaaga cttttatccg ttcctgaaag acaaccgtga gaaaattgaa 7020
aaaatcctga ccttccgtat tccgtactat gtaggtccgc tggcgcgtgg taactcccgt 7080
ttcgcttgga tgacccgcaa aagcgaagaa accatcaccc cgtggaattt cgaagaagtc 7140
gttgacaaag gcgcgtccgc gcagtctttc atcgaacgca tgacgaactt cgacaaaaac 7200
ctgccgaacg agaaagtgct gccgaaacac tctctgctgt acgagtactt cactgtgtac 7260
aacgaactga ccaaagtgaa atacgtcacc gaaggtatgc gtaaaccggc attcctgtcc 7320
ggtgagcaaa aaaaagcaat cgtggatctg ctgttcaaaa ccaaccgtaa agtaaccgtg 7380
aaacagctga aggaagacta tttcaagaaa atcgaatgtt ttgattctgt tgaaatctcc 7440
ggcgtggaag atcgcttcaa tgcgtccctg ggtacgtatc acgacctgct gaaaattatc 7500
aaagacaaag attttctgga caacgaggaa aacgaagaca tcctggagga tattgtactg 7560
accctgaccc tgttcgaaga ccgtgagatg atcgaagaac gcctgaaaac ctacgcccac 7620
ctgttcgatg acaaggtaat gaagcagctg aaacgtcgtc gttataccgg ctggggtcgt 7680
ctgtcccgta aactgatcaa tggcatccgt gataaacagt ctggcaaaac catcctggac 7740
ttcctgaaat ccgacggttt cgcgaatcgt aacttcatgc aactgattca tgacgattct 7800
ctgactttca aagaagacat ccagaaagca caggtttccg gccagggtga ctctctgcac 7860
gagcacattg ccaatctggc tggttctccg gctattaaaa agggtattct gcagactgtg 7920
aaagtagttg atgagctggt caaagtaatg ggccgtcaca agccggaaaa cattgtgatc 7980
gaaatggcac gtgaaaacca gacgacccag aaaggtcaga aaaactctcg tgaacgcatg 8040
aaacgtatcg aagaaggcat caaagaactg ggctctcaga tcctgaagga acaccctgta 8100
gaaaataccc agctgcagaa cgaaaagctg tatctgtatt acctgcagaa cggccgcgat 8160
atgtatgtgg accaggaact ggatatcaac cgcctgtccg attacgatgt agatcacatc 8220
gtgccgcaaa gcttcctgaa agacgacagc attgacaaca aagtactgac ccgttctgat 8280
aagaaccgtg gcaaatccga taacgtcccg tctgaagaag ttgttaaaaa aatgaaaaac 8340
tattggcgtc agctgctgaa cgcgaaactg atcacccagc gtaagttcga caatctgact 8400
aaagctgagc gcggtggtct gtccgaactg gataaagcgg gttttatcaa acgccagctg 8460
gttgaaaccc gtcagatcac gaagcacgtt gcgcagattc tggactctcg tatgaacacc 8520
aaatacgacg aaaacgacaa actgatccgc gaggttaagg ttatcaccct gaaaagcaaa 8580
ctggtatccg attttcgtaa agactttcag ttctacaaag tgcgcgaaat taacaactat 8640
caccacgctc acgatgcata tctgaatgca gttgttggca cggcgctgat caaaaagtat 8700
ccgaaactgg aatctgaatt cgtatacggc gattacaaag tgtatgacgt tcgtaagatg 8760
atcgcaaaat ccgagcagga aattggtaag gcgacggcga aatacttctt ttattccaat 8820
attatgaact ttttcaaaac cgaaatcacc ctggcgaatg gtgaaattcg taaacgcccg 8880
ctgatcgaaa ccaacggtga aactggtgaa atcgtttggg acaaaggccg cgacttcgcg 8940
accgtgcgta aagttctgtc tatgccgcaa gtgaacatcg tcaagaagac cgaagtacaa 9000
accggcggtt ttagcaaaga gagcattctg ccaaaacgta actccgacaa actgatcgcg 9060
cgcaagaaag actgggatcc gaaaaaatac ggtggtttcg attctccaac cgttgcttat 9120
tccgttctgg tggtagccaa agttgagaaa ggtaaaagca aaaaactgaa atccgtaaag 9180
gaactgctgg gtattactat catggagcgt agctccttcg aaaaaaaccc gatcgatttt 9240
ctggaagcga aaggctataa agaagtcaaa aaggacctga tcatcaaact gccaaaatac 9300
agcctgttcg agctggaaaa cggccgtaaa cgtatgctgg catctgcggg cgaactgcag 9360
aaaggcaacg agctggctct gccgtccaaa tacgtgaact ttctgtacct ggcctctcac 9420
tacgaaaaac tgaaaggttc cccggaagac aacgaacaga aacagctgtt cgtagagcag 9480
cacaaacact acctggacga gatcatcgaa cagatttctg aattttctaa acgtgtgatt 9540
ctggctgatg cgaatctgga taaagttctg tctgcctata acaagcatcg tgacaaaccg 9600
atccgcgaac aggctgagaa catcatccac ctgttcactc tgactaacct gggcgcgcca 9660
gcggctttca agtactttga taccaccatt gaccgcaagc gttacacctc cactaaagaa 9720
gtgctggacg cgactctgat ccaccagtcc atcaccggtc tgtacgagac ccgtatcgat 9780
ctgagccagc tgggcggtga caaaaggccg gcggccacga aaaaggccgg ccaggcaaaa 9840
aagaaaaagt gacaaagccc gaaaggaagc tgagttggct gctgccaccg ctgagcaata 9900
actagcataa ccccttgggg cctctaaacg ggtcttgagg ggttttttgc tgaaaggagg 9960
aactatatcc ggat 9974
<210> 2
<211> 1547
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 2
Met Lys Gln Ser Thr Ile Ala Leu Ala Leu Leu Pro Leu Leu Phe Thr
1 5 10 15
Pro Val Thr Lys Ala Met Ser Asp Lys Ile Ile His Leu Thr Asp Asp
20 25 30
Ser Phe Asp Thr Asp Val Leu Lys Ala Asp Gly Ala Ile Leu Val Asp
35 40 45
Phe Trp Ala Glu Trp Cys Gly Pro Cys Lys Met Ile Ala Pro Ile Leu
50 55 60
Asp Glu Ile Ala Asp Glu Tyr Gln Gly Lys Leu Thr Val Ala Lys Leu
65 70 75 80
Asn Ile Asp Gln Asn Pro Gly Thr Ala Pro Lys Tyr Gly Ile Arg Gly
85 90 95
Ile Pro Thr Leu Leu Leu Phe Lys Asn Gly Glu Val Ala Ala Thr Lys
100 105 110
Val Gly Ala Leu Ser Lys Gly Gln Leu Lys Glu Phe Leu Asp Ala Asn
115 120 125
Leu Ala Gly Ser Gly Ser Gly His Met His His His His His His Asp
130 135 140
Asp Asp Asp Lys Met Pro Lys Lys Lys Arg Lys Val Gly Ile His Gly
145 150 155 160
Val Pro Ala Ala Asp Lys Lys Tyr Ser Ile Gly Leu Asp Ile Gly Thr
165 170 175
Asn Ser Val Gly Trp Ala Val Ile Thr Asp Glu Tyr Lys Val Pro Ser
180 185 190
Lys Lys Phe Lys Val Leu Gly Asn Thr Asp Arg His Ser Ile Lys Lys
195 200 205
Asn Leu Ile Gly Ala Leu Leu Phe Asp Ser Gly Glu Thr Ala Glu Ala
210 215 220
Thr Arg Leu Lys Arg Thr Ala Arg Arg Arg Tyr Thr Arg Arg Lys Asn
225 230 235 240
Arg Ile Cys Tyr Leu Gln Glu Ile Phe Ser Asn Glu Met Ala Lys Val
245 250 255
Asp Asp Ser Phe Phe His Arg Leu Glu Glu Ser Phe Leu Val Glu Glu
260 265 270
Asp Lys Lys His Glu Arg His Pro Ile Phe Gly Asn Ile Val Asp Glu
275 280 285
Val Ala Tyr His Glu Lys Tyr Pro Thr Ile Tyr His Leu Arg Lys Lys
290 295 300
Leu Val Asp Ser Thr Asp Lys Ala Asp Leu Arg Leu Ile Tyr Leu Ala
305 310 315 320
Leu Ala His Met Ile Lys Phe Arg Gly His Phe Leu Ile Glu Gly Asp
325 330 335
Leu Asn Pro Asp Asn Ser Asp Val Asp Lys Leu Phe Ile Gln Leu Val
340 345 350
Gln Thr Tyr Asn Gln Leu Phe Glu Glu Asn Pro Ile Asn Ala Ser Gly
355 360 365
Val Asp Ala Lys Ala Ile Leu Ser Ala Arg Leu Ser Lys Ser Arg Arg
370 375 380
Leu Glu Asn Leu Ile Ala Gln Leu Pro Gly Glu Lys Lys Asn Gly Leu
385 390 395 400
Phe Gly Asn Leu Ile Ala Leu Ser Leu Gly Leu Thr Pro Asn Phe Lys
405 410 415
Ser Asn Phe Asp Leu Ala Glu Asp Ala Lys Leu Gln Leu Ser Lys Asp
420 425 430
Thr Tyr Asp Asp Asp Leu Asp Asn Leu Leu Ala Gln Ile Gly Asp Gln
435 440 445
Tyr Ala Asp Leu Phe Leu Ala Ala Lys Asn Leu Ser Asp Ala Ile Leu
450 455 460
Leu Ser Asp Ile Leu Arg Val Asn Thr Glu Ile Thr Lys Ala Pro Leu
465 470 475 480
Ser Ala Ser Met Ile Lys Arg Tyr Asp Glu His His Gln Asp Leu Thr
485 490 495
Leu Leu Lys Ala Leu Val Arg Gln Gln Leu Pro Glu Lys Tyr Lys Glu
500 505 510
Ile Phe Phe Asp Gln Ser Lys Asn Gly Tyr Ala Gly Tyr Ile Asp Gly
515 520 525
Gly Ala Ser Gln Glu Glu Phe Tyr Lys Phe Ile Lys Pro Ile Leu Glu
530 535 540
Lys Met Asp Gly Thr Glu Glu Leu Leu Val Lys Leu Asn Arg Glu Asp
545 550 555 560
Leu Leu Arg Lys Gln Arg Thr Phe Asp Asn Gly Ser Ile Pro His Gln
565 570 575
Ile His Leu Gly Glu Leu His Ala Ile Leu Arg Arg Gln Glu Asp Phe
580 585 590
Tyr Pro Phe Leu Lys Asp Asn Arg Glu Lys Ile Glu Lys Ile Leu Thr
595 600 605
Phe Arg Ile Pro Tyr Tyr Val Gly Pro Leu Ala Arg Gly Asn Ser Arg
610 615 620
Phe Ala Trp Met Thr Arg Lys Ser Glu Glu Thr Ile Thr Pro Trp Asn
625 630 635 640
Phe Glu Glu Val Val Asp Lys Gly Ala Ser Ala Gln Ser Phe Ile Glu
645 650 655
Arg Met Thr Asn Phe Asp Lys Asn Leu Pro Asn Glu Lys Val Leu Pro
660 665 670
Lys His Ser Leu Leu Tyr Glu Tyr Phe Thr Val Tyr Asn Glu Leu Thr
675 680 685
Lys Val Lys Tyr Val Thr Glu Gly Met Arg Lys Pro Ala Phe Leu Ser
690 695 700
Gly Glu Gln Lys Lys Ala Ile Val Asp Leu Leu Phe Lys Thr Asn Arg
705 710 715 720
Lys Val Thr Val Lys Gln Leu Lys Glu Asp Tyr Phe Lys Lys Ile Glu
725 730 735
Cys Phe Asp Ser Val Glu Ile Ser Gly Val Glu Asp Arg Phe Asn Ala
740 745 750
Ser Leu Gly Thr Tyr His Asp Leu Leu Lys Ile Ile Lys Asp Lys Asp
755 760 765
Phe Leu Asp Asn Glu Glu Asn Glu Asp Ile Leu Glu Asp Ile Val Leu
770 775 780
Thr Leu Thr Leu Phe Glu Asp Arg Glu Met Ile Glu Glu Arg Leu Lys
785 790 795 800
Thr Tyr Ala His Leu Phe Asp Asp Lys Val Met Lys Gln Leu Lys Arg
805 810 815
Arg Arg Tyr Thr Gly Trp Gly Arg Leu Ser Arg Lys Leu Ile Asn Gly
820 825 830
Ile Arg Asp Lys Gln Ser Gly Lys Thr Ile Leu Asp Phe Leu Lys Ser
835 840 845
Asp Gly Phe Ala Asn Arg Asn Phe Met Gln Leu Ile His Asp Asp Ser
850 855 860
Leu Thr Phe Lys Glu Asp Ile Gln Lys Ala Gln Val Ser Gly Gln Gly
865 870 875 880
Asp Ser Leu His Glu His Ile Ala Asn Leu Ala Gly Ser Pro Ala Ile
885 890 895
Lys Lys Gly Ile Leu Gln Thr Val Lys Val Val Asp Glu Leu Val Lys
900 905 910
Val Met Gly Arg His Lys Pro Glu Asn Ile Val Ile Glu Met Ala Arg
915 920 925
Glu Asn Gln Thr Thr Gln Lys Gly Gln Lys Asn Ser Arg Glu Arg Met
930 935 940
Lys Arg Ile Glu Glu Gly Ile Lys Glu Leu Gly Ser Gln Ile Leu Lys
945 950 955 960
Glu His Pro Val Glu Asn Thr Gln Leu Gln Asn Glu Lys Leu Tyr Leu
965 970 975
Tyr Tyr Leu Gln Asn Gly Arg Asp Met Tyr Val Asp Gln Glu Leu Asp
980 985 990
Ile Asn Arg Leu Ser Asp Tyr Asp Val Asp His Ile Val Pro Gln Ser
995 1000 1005
Phe Leu Lys Asp Asp Ser Ile Asp Asn Lys Val Leu Thr Arg Ser Asp
1010 1015 1020
Lys Asn Arg Gly Lys Ser Asp Asn Val Pro Ser Glu Glu Val Val Lys
1025 1030 1035 1040
Lys Met Lys Asn Tyr Trp Arg Gln Leu Leu Asn Ala Lys Leu Ile Thr
1045 1050 1055
Gln Arg Lys Phe Asp Asn Leu Thr Lys Ala Glu Arg Gly Gly Leu Ser
1060 1065 1070
Glu Leu Asp Lys Ala Gly Phe Ile Lys Arg Gln Leu Val Glu Thr Arg
1075 1080 1085
Gln Ile Thr Lys His Val Ala Gln Ile Leu Asp Ser Arg Met Asn Thr
1090 1095 1100
Lys Tyr Asp Glu Asn Asp Lys Leu Ile Arg Glu Val Lys Val Ile Thr
1105 1110 1115 1120
Leu Lys Ser Lys Leu Val Ser Asp Phe Arg Lys Asp Phe Gln Phe Tyr
1125 1130 1135
Lys Val Arg Glu Ile Asn Asn Tyr His His Ala His Asp Ala Tyr Leu
1140 1145 1150
Asn Ala Val Val Gly Thr Ala Leu Ile Lys Lys Tyr Pro Lys Leu Glu
1155 1160 1165
Ser Glu Phe Val Tyr Gly Asp Tyr Lys Val Tyr Asp Val Arg Lys Met
1170 1175 1180
Ile Ala Lys Ser Glu Gln Glu Ile Gly Lys Ala Thr Ala Lys Tyr Phe
1185 1190 1195 1200
Phe Tyr Ser Asn Ile Met Asn Phe Phe Lys Thr Glu Ile Thr Leu Ala
1205 1210 1215
Asn Gly Glu Ile Arg Lys Arg Pro Leu Ile Glu Thr Asn Gly Glu Thr
1220 1225 1230
Gly Glu Ile Val Trp Asp Lys Gly Arg Asp Phe Ala Thr Val Arg Lys
1235 1240 1245
Val Leu Ser Met Pro Gln Val Asn Ile Val Lys Lys Thr Glu Val Gln
1250 1255 1260
Thr Gly Gly Phe Ser Lys Glu Ser Ile Leu Pro Lys Arg Asn Ser Asp
1265 1270 1275 1280
Lys Leu Ile Ala Arg Lys Lys Asp Trp Asp Pro Lys Lys Tyr Gly Gly
1285 1290 1295
Phe Asp Ser Pro Thr Val Ala Tyr Ser Val Leu Val Val Ala Lys Val
1300 1305 1310
Glu Lys Gly Lys Ser Lys Lys Leu Lys Ser Val Lys Glu Leu Leu Gly
1315 1320 1325
Ile Thr Ile Met Glu Arg Ser Ser Phe Glu Lys Asn Pro Ile Asp Phe
1330 1335 1340
Leu Glu Ala Lys Gly Tyr Lys Glu Val Lys Lys Asp Leu Ile Ile Lys
1345 1350 1355 1360
Leu Pro Lys Tyr Ser Leu Phe Glu Leu Glu Asn Gly Arg Lys Arg Met
1365 1370 1375
Leu Ala Ser Ala Gly Glu Leu Gln Lys Gly Asn Glu Leu Ala Leu Pro
1380 1385 1390
Ser Lys Tyr Val Asn Phe Leu Tyr Leu Ala Ser His Tyr Glu Lys Leu
1395 1400 1405
Lys Gly Ser Pro Glu Asp Asn Glu Gln Lys Gln Leu Phe Val Glu Gln
1410 1415 1420
His Lys His Tyr Leu Asp Glu Ile Ile Glu Gln Ile Ser Glu Phe Ser
1425 1430 1435 1440
Lys Arg Val Ile Leu Ala Asp Ala Asn Leu Asp Lys Val Leu Ser Ala
1445 1450 1455
Tyr Asn Lys His Arg Asp Lys Pro Ile Arg Glu Gln Ala Glu Asn Ile
1460 1465 1470
Ile His Leu Phe Thr Leu Thr Asn Leu Gly Ala Pro Ala Ala Phe Lys
1475 1480 1485
Tyr Phe Asp Thr Thr Ile Asp Arg Lys Arg Tyr Thr Ser Thr Lys Glu
1490 1495 1500
Val Leu Asp Ala Thr Leu Ile His Gln Ser Ile Thr Gly Leu Tyr Glu
1505 1510 1515 1520
Thr Arg Ile Asp Leu Ser Gln Leu Gly Gly Asp Lys Arg Pro Ala Ala
1525 1530 1535
Thr Lys Lys Ala Gly Gln Ala Lys Lys Lys Lys
1540 1545
<210> 3
<211> 1399
<212> PRT
<213> Artificial Sequence (Artificial Sequence)
<400> 3
Met Pro Lys Lys Lys Arg Lys Val Gly Ile His Gly Val Pro Ala Ala
1 5 10 15
Asp Lys Lys Tyr Ser Ile Gly Leu Asp Ile Gly Thr Asn Ser Val Gly
20 25 30
Trp Ala Val Ile Thr Asp Glu Tyr Lys Val Pro Ser Lys Lys Phe Lys
35 40 45
Val Leu Gly Asn Thr Asp Arg His Ser Ile Lys Lys Asn Leu Ile Gly
50 55 60
Ala Leu Leu Phe Asp Ser Gly Glu Thr Ala Glu Ala Thr Arg Leu Lys
65 70 75 80
Arg Thr Ala Arg Arg Arg Tyr Thr Arg Arg Lys Asn Arg Ile Cys Tyr
85 90 95
Leu Gln Glu Ile Phe Ser Asn Glu Met Ala Lys Val Asp Asp Ser Phe
100 105 110
Phe His Arg Leu Glu Glu Ser Phe Leu Val Glu Glu Asp Lys Lys His
115 120 125
Glu Arg His Pro Ile Phe Gly Asn Ile Val Asp Glu Val Ala Tyr His
130 135 140
Glu Lys Tyr Pro Thr Ile Tyr His Leu Arg Lys Lys Leu Val Asp Ser
145 150 155 160
Thr Asp Lys Ala Asp Leu Arg Leu Ile Tyr Leu Ala Leu Ala His Met
165 170 175
Ile Lys Phe Arg Gly His Phe Leu Ile Glu Gly Asp Leu Asn Pro Asp
180 185 190
Asn Ser Asp Val Asp Lys Leu Phe Ile Gln Leu Val Gln Thr Tyr Asn
195 200 205
Gln Leu Phe Glu Glu Asn Pro Ile Asn Ala Ser Gly Val Asp Ala Lys
210 215 220
Ala Ile Leu Ser Ala Arg Leu Ser Lys Ser Arg Arg Leu Glu Asn Leu
225 230 235 240
Ile Ala Gln Leu Pro Gly Glu Lys Lys Asn Gly Leu Phe Gly Asn Leu
245 250 255
Ile Ala Leu Ser Leu Gly Leu Thr Pro Asn Phe Lys Ser Asn Phe Asp
260 265 270
Leu Ala Glu Asp Ala Lys Leu Gln Leu Ser Lys Asp Thr Tyr Asp Asp
275 280 285
Asp Leu Asp Asn Leu Leu Ala Gln Ile Gly Asp Gln Tyr Ala Asp Leu
290 295 300
Phe Leu Ala Ala Lys Asn Leu Ser Asp Ala Ile Leu Leu Ser Asp Ile
305 310 315 320
Leu Arg Val Asn Thr Glu Ile Thr Lys Ala Pro Leu Ser Ala Ser Met
325 330 335
Ile Lys Arg Tyr Asp Glu His His Gln Asp Leu Thr Leu Leu Lys Ala
340 345 350
Leu Val Arg Gln Gln Leu Pro Glu Lys Tyr Lys Glu Ile Phe Phe Asp
355 360 365
Gln Ser Lys Asn Gly Tyr Ala Gly Tyr Ile Asp Gly Gly Ala Ser Gln
370 375 380
Glu Glu Phe Tyr Lys Phe Ile Lys Pro Ile Leu Glu Lys Met Asp Gly
385 390 395 400
Thr Glu Glu Leu Leu Val Lys Leu Asn Arg Glu Asp Leu Leu Arg Lys
405 410 415
Gln Arg Thr Phe Asp Asn Gly Ser Ile Pro His Gln Ile His Leu Gly
420 425 430
Glu Leu His Ala Ile Leu Arg Arg Gln Glu Asp Phe Tyr Pro Phe Leu
435 440 445
Lys Asp Asn Arg Glu Lys Ile Glu Lys Ile Leu Thr Phe Arg Ile Pro
450 455 460
Tyr Tyr Val Gly Pro Leu Ala Arg Gly Asn Ser Arg Phe Ala Trp Met
465 470 475 480
Thr Arg Lys Ser Glu Glu Thr Ile Thr Pro Trp Asn Phe Glu Glu Val
485 490 495
Val Asp Lys Gly Ala Ser Ala Gln Ser Phe Ile Glu Arg Met Thr Asn
500 505 510
Phe Asp Lys Asn Leu Pro Asn Glu Lys Val Leu Pro Lys His Ser Leu
515 520 525
Leu Tyr Glu Tyr Phe Thr Val Tyr Asn Glu Leu Thr Lys Val Lys Tyr
530 535 540
Val Thr Glu Gly Met Arg Lys Pro Ala Phe Leu Ser Gly Glu Gln Lys
545 550 555 560
Lys Ala Ile Val Asp Leu Leu Phe Lys Thr Asn Arg Lys Val Thr Val
565 570 575
Lys Gln Leu Lys Glu Asp Tyr Phe Lys Lys Ile Glu Cys Phe Asp Ser
580 585 590
Val Glu Ile Ser Gly Val Glu Asp Arg Phe Asn Ala Ser Leu Gly Thr
595 600 605
Tyr His Asp Leu Leu Lys Ile Ile Lys Asp Lys Asp Phe Leu Asp Asn
610 615 620
Glu Glu Asn Glu Asp Ile Leu Glu Asp Ile Val Leu Thr Leu Thr Leu
625 630 635 640
Phe Glu Asp Arg Glu Met Ile Glu Glu Arg Leu Lys Thr Tyr Ala His
645 650 655
Leu Phe Asp Asp Lys Val Met Lys Gln Leu Lys Arg Arg Arg Tyr Thr
660 665 670
Gly Trp Gly Arg Leu Ser Arg Lys Leu Ile Asn Gly Ile Arg Asp Lys
675 680 685
Gln Ser Gly Lys Thr Ile Leu Asp Phe Leu Lys Ser Asp Gly Phe Ala
690 695 700
Asn Arg Asn Phe Met Gln Leu Ile His Asp Asp Ser Leu Thr Phe Lys
705 710 715 720
Glu Asp Ile Gln Lys Ala Gln Val Ser Gly Gln Gly Asp Ser Leu His
725 730 735
Glu His Ile Ala Asn Leu Ala Gly Ser Pro Ala Ile Lys Lys Gly Ile
740 745 750
Leu Gln Thr Val Lys Val Val Asp Glu Leu Val Lys Val Met Gly Arg
755 760 765
His Lys Pro Glu Asn Ile Val Ile Glu Met Ala Arg Glu Asn Gln Thr
770 775 780
Thr Gln Lys Gly Gln Lys Asn Ser Arg Glu Arg Met Lys Arg Ile Glu
785 790 795 800
Glu Gly Ile Lys Glu Leu Gly Ser Gln Ile Leu Lys Glu His Pro Val
805 810 815
Glu Asn Thr Gln Leu Gln Asn Glu Lys Leu Tyr Leu Tyr Tyr Leu Gln
820 825 830
Asn Gly Arg Asp Met Tyr Val Asp Gln Glu Leu Asp Ile Asn Arg Leu
835 840 845
Ser Asp Tyr Asp Val Asp His Ile Val Pro Gln Ser Phe Leu Lys Asp
850 855 860
Asp Ser Ile Asp Asn Lys Val Leu Thr Arg Ser Asp Lys Asn Arg Gly
865 870 875 880
Lys Ser Asp Asn Val Pro Ser Glu Glu Val Val Lys Lys Met Lys Asn
885 890 895
Tyr Trp Arg Gln Leu Leu Asn Ala Lys Leu Ile Thr Gln Arg Lys Phe
900 905 910
Asp Asn Leu Thr Lys Ala Glu Arg Gly Gly Leu Ser Glu Leu Asp Lys
915 920 925
Ala Gly Phe Ile Lys Arg Gln Leu Val Glu Thr Arg Gln Ile Thr Lys
930 935 940
His Val Ala Gln Ile Leu Asp Ser Arg Met Asn Thr Lys Tyr Asp Glu
945 950 955 960
Asn Asp Lys Leu Ile Arg Glu Val Lys Val Ile Thr Leu Lys Ser Lys
965 970 975
Leu Val Ser Asp Phe Arg Lys Asp Phe Gln Phe Tyr Lys Val Arg Glu
980 985 990
Ile Asn Asn Tyr His His Ala His Asp Ala Tyr Leu Asn Ala Val Val
995 1000 1005
Gly Thr Ala Leu Ile Lys Lys Tyr Pro Lys Leu Glu Ser Glu Phe Val
1010 1015 1020
Tyr Gly Asp Tyr Lys Val Tyr Asp Val Arg Lys Met Ile Ala Lys Ser
1025 1030 1035 1040
Glu Gln Glu Ile Gly Lys Ala Thr Ala Lys Tyr Phe Phe Tyr Ser Asn
1045 1050 1055
Ile Met Asn Phe Phe Lys Thr Glu Ile Thr Leu Ala Asn Gly Glu Ile
1060 1065 1070
Arg Lys Arg Pro Leu Ile Glu Thr Asn Gly Glu Thr Gly Glu Ile Val
1075 1080 1085
Trp Asp Lys Gly Arg Asp Phe Ala Thr Val Arg Lys Val Leu Ser Met
1090 1095 1100
Pro Gln Val Asn Ile Val Lys Lys Thr Glu Val Gln Thr Gly Gly Phe
1105 1110 1115 1120
Ser Lys Glu Ser Ile Leu Pro Lys Arg Asn Ser Asp Lys Leu Ile Ala
1125 1130 1135
Arg Lys Lys Asp Trp Asp Pro Lys Lys Tyr Gly Gly Phe Asp Ser Pro
1140 1145 1150
Thr Val Ala Tyr Ser Val Leu Val Val Ala Lys Val Glu Lys Gly Lys
1155 1160 1165
Ser Lys Lys Leu Lys Ser Val Lys Glu Leu Leu Gly Ile Thr Ile Met
1170 1175 1180
Glu Arg Ser Ser Phe Glu Lys Asn Pro Ile Asp Phe Leu Glu Ala Lys
1185 1190 1195 1200
Gly Tyr Lys Glu Val Lys Lys Asp Leu Ile Ile Lys Leu Pro Lys Tyr
1205 1210 1215
Ser Leu Phe Glu Leu Glu Asn Gly Arg Lys Arg Met Leu Ala Ser Ala
1220 1225 1230
Gly Glu Leu Gln Lys Gly Asn Glu Leu Ala Leu Pro Ser Lys Tyr Val
1235 1240 1245
Asn Phe Leu Tyr Leu Ala Ser His Tyr Glu Lys Leu Lys Gly Ser Pro
1250 1255 1260
Glu Asp Asn Glu Gln Lys Gln Leu Phe Val Glu Gln His Lys His Tyr
1265 1270 1275 1280
Leu Asp Glu Ile Ile Glu Gln Ile Ser Glu Phe Ser Lys Arg Val Ile
1285 1290 1295
Leu Ala Asp Ala Asn Leu Asp Lys Val Leu Ser Ala Tyr Asn Lys His
1300 1305 1310
Arg Asp Lys Pro Ile Arg Glu Gln Ala Glu Asn Ile Ile His Leu Phe
1315 1320 1325
Thr Leu Thr Asn Leu Gly Ala Pro Ala Ala Phe Lys Tyr Phe Asp Thr
1330 1335 1340
Thr Ile Asp Arg Lys Arg Tyr Thr Ser Thr Lys Glu Val Leu Asp Ala
1345 1350 1355 1360
Thr Leu Ile His Gln Ser Ile Thr Gly Leu Tyr Glu Thr Arg Ile Asp
1365 1370 1375
Leu Ser Gln Leu Gly Gly Asp Lys Arg Pro Ala Ala Thr Lys Lys Ala
1380 1385 1390
Gly Gln Ala Lys Lys Lys Lys
1395
<210> 4
<211> 225
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 4
ggcttgtcgg actcttcgct attacgccag ctggcgaagg gggatgtgct gcaaggcgat 60
taagttgggt aacgccaggg ttttcccagt cacgacgtta ggaaattaat acgactcact 120
ataggagagc acagtcagcc tggcggtttt agagctagaa atagcaagtt aaaataaggc 180
tagtccgtta tcaacttgaa aaagtggcac cgagtcggtg ctttt 225
<210> 5
<211> 225
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 5
ggcttgtcgg actcttcgct attacgccag ctggcgaagg gggatgtgct gcaaggcgat 60
taagttgggt aacgccaggg ttttcccagt cacgacgtta ggaaattaat acgactcact 120
ataggcttcc agaattggat ctccggtttt agagctagaa atagcaagtt aaaataaggc 180
tagtccgtta tcaacttgaa aaagtggcac cgagtcggtg ctttt 225
<210> 6
<211> 225
<212> RNA
<213> Artificial Sequence (Artificial Sequence)
<400> 6
ggcuugucgg acucuucgcu auuacgccag cuggcgaagg gggaugugcu gcaaggcgau 60
uaaguugggu aacgccaggg uuuucccagu cacgacguua ggaaauuaau acgacucacu 120
auaggagagc acagucagcc uggcgguuuu agagcuagaa auagcaaguu aaaauaaggc 180
uaguccguua ucaacuugaa aaaguggcac cgagucggug cuuuu 225
<210> 7
<211> 225
<212> RNA
<213> Artificial Sequence (Artificial Sequence)
<400> 7
ggcuugucgg acucuucgcu auuacgccag cuggcgaagg gggaugugcu gcaaggcgau 60
uaaguugggu aacgccaggg uuuucccagu cacgacguua ggaaauuaau acgacucacu 120
auaggcuucc agaauuggau cuccgguuuu agagcuagaa auagcaaguu aaaauaaggc 180
uaguccguua ucaacuugaa aaaguggcac cgagucggug cuuuu 225
<210> 8
<211> 153
<212> PRT
<213> Sus scrofa
<400> 8
Met Ala Thr Lys Ala Val Cys Val Leu Lys Gly Asp Gly Pro Val Gln
1 5 10 15
Gly Thr Ile Tyr Phe Glu Leu Lys Gly Glu Lys Thr Val Leu Val Thr
20 25 30
Gly Thr Ile Lys Gly Leu Ala Glu Gly Asp His Gly Phe His Val His
35 40 45
Gln Phe Gly Asp Asn Thr Gln Gly Cys Thr Ser Ala Gly Pro His Phe
50 55 60
Asn Pro Glu Ser Lys Lys His Gly Gly Pro Lys Asp Gln Glu Arg His
65 70 75 80
Val Gly Asp Leu Gly Asn Val Thr Ala Gly Lys Asp Gly Val Ala Thr
85 90 95
Val Tyr Ile Glu Asp Ser Val Ile Ala Leu Ser Gly Asp His Ser Ile
100 105 110
Ile Gly Arg Thr Met Val Val His Glu Lys Pro Asp Asp Leu Gly Arg
115 120 125
Gly Gly Asn Glu Glu Ser Thr Lys Thr Gly Asn Ala Gly Ser Arg Leu
130 135 140
Ala Cys Gly Val Ile Gly Ile Thr Gln
145 150
<210> 9
<211> 1500
<212> DNA
<213> Sus scrofa
<400> 9
gctgtaccag tgcaggtcct cacttcaatc ctgaatccaa aaaacatggt gggccaaagg 60
atcaagagag gtgagtgatc taaggtcttt tgggaacagt agggaaattg catgctaaga 120
taattgtatc ttctgctctt aaagctgttg cccccatgta acccccttgc cccaactgct 180
agaatggctt actccctggg ctaaggactt gacaaatggg gacacgtaaa acgatttggt 240
tttgtagcat ttattgaata tagaactaat acaagtgcca gagggaactc atacaggaaa 300
tgtcatgagt aacagtattg ttaactgcta gcaaaataaa acactgtgaa acattagaag 360
ctttgtagat aaaaatttga tattggaaat tcagtgagat tccatttgta tgttttctga 420
gagcctttca ggaacacatt acatttaagg acaaggatta ccttcctttt tatcagaggc 480
ctagaggcat agctctctta gccaggccag gaattggttt accccggtac ttgagctctg 540
aaattggaga tgcaccccca tcccacgcct ctgcctggag cattgcttta gagacgtgaa 600
accttgtttg aagccttatg tgtctagaac atctagttac ttgtttttaa cttgcatatt 660
ttcagaatgt tgccgttctg gaaaagtggg ttctgtttga tatagactcc gtcttcctct 720
tagcccagcc tagattatct gactcagtcc attttaaatt gagtttatga actgcagtta 780
aatggaaatc agtcctaatc ccgcgaatgc gttttcaccg tcaggcacgt tggagacctg 840
ggcaatgtga ctgctggcaa agatggtgtg gccactgtgt acatcgaaga ttctgtgatc 900
gccctctcgg gagaccattc catcattggc cgcacaatgg tggtacgtgt tcatataata 960
aggatgtgca taacatttct tctaacacat ggtcatgttc tcttttccta tttcatgctt 1020
attaatcctg gtttctaaag gtccccataa attgtacttt taatacagat taggaaaagc 1080
cagttatttt actgaatgat tgtagcgaag aatgaatgat ctaggtcagt taagaacact 1140
gttctgctgc gatgcagtag taaagcagat gacattttat catattagat ctgtgttacg 1200
gaaacagacg cagtcttcat ctagttttta aatggccagg ttttcttgcc actatggggt 1260
ctgtagttaa ccagaacatt ttaaatctaa aatctgggct ggacctcagt actaagaatt 1320
ccctcacgtc tgcaggttgt catcgtttca catgtgggat agttgcccta acttagtgtc 1380
gagctgcatc tggttcatac acgacagctg ttataggttc cctctgacct gccccagagg 1440
tcagttcaca ttcagtagac acttcctttc agttgactct ttttccttag aattttcttc 1500
<210> 10
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 10
agaaucuucg auguacacag guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 11
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 11
gacugcuggc aaagauggug guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 12
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 12
ugccagcagu cacauugccc guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 13
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 13
gaccugggca augugacugc guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 14
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 14
ugauggaaug gucucccgag guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 15
<211> 100
<212> RNA
<213> Artificial Sequence
<400> 15
guuuucaccg ucaggcacgu guuuuagagc uagaaauagc aaguuaaaau aaggcuaguc 60
cguuaucaac uugaaaaagu ggcaccgagu cggugcuuuu 100
<210> 16
<211> 225
<212> DNA
<213> Artificial Sequence
<400> 16
ggcttgtcgg actcttcgct attacgccag ctggcgaagg gggatgtgct gcaaggcgat 60
taagttgggt aacgccaggg ttttcccagt cacgacgtta ggaaattaat acgactcact 120
ataggagaat cttcgatgta cacaggtttt agagctagaa atagcaagtt aaaataaggc 180
tagtccgtta tcaacttgaa aaagtggcac cgagtcggtg ctttt 225
<210> 17
<211> 225
<212> DNA
<213> Artificial Sequence
<400> 17
ggcttgtcgg actcttcgct attacgccag ctggcgaagg gggatgtgct gcaaggcgat 60
taagttgggt aacgccaggg ttttcccagt cacgacgtta ggaaattaat acgactcact 120
atagggtttt caccgtcagg cacgtgtttt agagctagaa atagcaagtt aaaataaggc 180
tagtccgtta tcaacttgaa aaagtggcac cgagtcggtg ctttt 225
<210> 18
<211> 102
<212> RNA
<213> Artificial Sequence
<400> 18
ggagaaucuu cgauguacac agguuuuaga gcuagaaaua gcaaguuaaa auaaggcuag 60
uccguuauca acuugaaaaa guggcaccga gucggugcuu uu 102
<210> 19
<211> 102
<212> RNA
<213> Artificial Sequence
<400> 19
ggguuuucac cgucaggcac guguuuuaga gcuagaaaua gcaaguuaaa auaaggcuag 60
uccguuauca acuugaaaaa guggcaccga gucggugcuu uu 102
<210> 20
<211> 160
<212> DNA
<213> Artificial Sequence
<400> 20
gaactgcagt taaatggaaa tcagtcctaa tcccgcgaat gcgttttcac cgtcaggcat 60
gtcggagacc tgagaaatgt gactgctggc aaagatgcag tggctactgt gtacatcgaa 120
gattctgtga tcgccctctc gggagaccat tccatcattg 160
<210> 21
<211> 160
<212> DNA
<213> Sus scrofa
<400> 21
gaactgcagt taaatggaaa tcagtcctaa tcccgcgaat gcgttttcac cgtcaggcac 60
gttggagacc tgggcaatgt gactgctggc aaagatggtg tggccactgt gtacatcgaa 120
gattctgtga tcgccctctc gggagaccat tccatcattg 160

Claims (17)

1. A method of making a recombinant cell comprising the steps of: using the nucleotide sequence of SEQ ID NO:20 to substitute the DNA molecule shown in SEQ ID NO:21 to obtain the recombinant cell.
2. The method of claim 1, wherein: using the nucleotide sequence of SEQ ID NO:20 to substitute the DNA molecule shown in SEQ ID NO:21 is realized by the following steps: co-transfecting the SOD1-gRNA1, the SOD1-gRNA6, the SOD1-mutant-ss160 and the NCN protein into a pig cell; the SOD1-gRNA1 is sgRNA, and a target sequence binding region is shown in SEQ ID NO:18, nucleotides 3 to 22; the SOD1-gRNA6 is sgRNA, and a target sequence binding region is shown in SEQ ID NO:19 at nucleotides 3 to 22; the SOD1-mutant-ss160 is SEQ ID NO:20, a single-stranded DNA molecule; the NCN protein is a Cas9 protein or a fusion protein with a Cas9 protein.
3. The method of claim 2, wherein: the NCN protein is shown as SEQ ID NO:3, respectively.
4. A method according to claim 2 or 3, characterized by: the proportions of the pig cells, the SOD1-gRNA1, the SOD1-gRNA6, the SOD1-mutant-ss160 and the NCN protein are as follows in sequence: 10 ten thousand porcine primary fibroblasts: 0.8-1.2 μ g SOD1-gRNA1:0.8-1.2 μ g SOD1-gRNA6: 1.8-2.2. Mu.g SOD1-mutant-ss160: 3-5. Mu.g NCN protein.
5. The method of claim 3, wherein:
the preparation method of the NCN protein comprises the following steps:
(1) Introducing the plasmid pKG-GE4 into escherichia coli BL21 (DE 3) to obtain a recombinant strain;
(2) Culturing the recombinant strain by adopting a liquid culture medium at 37 ℃, adding IPTG (isopropyl-beta-thiogalactoside) and carrying out induced culture at 25 ℃, and then collecting thalli;
(3) Crushing the collected thalli, and collecting a crude protein solution;
(4) Purification of the crude protein solution with His by affinity chromatography 6 A fusion protein of the tag;
(5) By using a compound having His 6 Tagged enterokinase cleavage with His 6 The tagged fusion protein was then removed with His using Ni-NTA resin 6 A tagged protein, resulting in a purified NCN protein;
plasmid pKG-GE4 has the sequence shown in SEQ ID NO:1, nucleotide 5209-9852.
6. A kit comprises SOD1-gRNA1, SOD1-gRNA6, SOD1-mutant-ss160 and NCN protein;
SOD1-gRNA1 is SOD1-gRNA1 described in claim 2; SOD1-gRNA6 is SOD1-gRNA6 described in claim 2; the SOD1-mutant-ss160 is the SOD1-mutant-ss160 as claimed in claim 2; the NCN protein is the NCN protein described in claim 2 or 3;
the application of the kit is as follows (a), (b) or (c): (a) preparing a recombinant cell; (b) preparing model pigs of amyotrophic lateral sclerosis; (c) Preparing a cell model of amyotrophic lateral sclerosis or an organization model of the amyotrophic lateral sclerosis or an organ model of the amyotrophic lateral sclerosis.
7. A kit comprises SOD1-gRNA1, SOD1-gRNA6, SOD1-mutant-ss160 and plasmid pKG-GE4;
SOD1-gRNA1 is SOD1-gRNA1 described in claim 2; SOD1-gRNA6 is SOD1-gRNA6 described in claim 2; the SOD1-mutant-ss160 is the SOD1-mutant-ss160 as claimed in claim 2; plasmid pKG-GE4 is the specific plasmid according to claim 17;
the application of the kit is as follows (a), (b) or (c): (a) preparing a recombinant cell; (b) preparing model pigs of amyotrophic lateral sclerosis; (c) Preparing a cell model of amyotrophic lateral sclerosis or an organization model of amyotrophic lateral sclerosis or an organ model of amyotrophic lateral sclerosis.
8. The kit of claim 7, wherein: the kit also comprises escherichia coli BL21 (DE 3).
The application of SOD1-gRNA1, SOD1-gRNA6, SOD1-mutant-ss160 and NCN protein in the preparation of a kit;
SOD1-gRNA1 is SOD1-gRNA1 described in claim 2; SOD1-gRNA6 is SOD1-gRNA6 described in claim 2; the SOD1-mutant-ss160 is the SOD1-mutant-ss160 as claimed in claim 2; the NCN protein is the NCN protein described in claim 2 or 3;
the application of the kit is as follows (a), (b) or (c): (a) preparing a recombinant cell; (b) preparing model pigs of amyotrophic lateral sclerosis; (c) Preparing a cell model of amyotrophic lateral sclerosis or an organization model of the amyotrophic lateral sclerosis or an organ model of the amyotrophic lateral sclerosis.
The application of SOD1-gRNA1, SOD1-gRNA6, SOD1-mutant-ss160 and plasmid pKG-GE4 in the preparation of a kit;
SOD1-gRNA1 is SOD1-gRNA1 described in claim 2; SOD1-gRNA6 is SOD1-gRNA6 described in claim 2; the SOD1-mutant-ss160 is the SOD1-mutant-ss160 as claimed in claim 2; plasmid pKG-GE4 is the specific plasmid according to claim 17;
the application of the kit is as follows (a), (b) or (c): (a) preparing a recombinant cell; (b) preparing model pigs of amyotrophic lateral sclerosis; (c) Preparing a cell model of amyotrophic lateral sclerosis or an organization model of amyotrophic lateral sclerosis or an organ model of amyotrophic lateral sclerosis.
11. A recombinant cell produced by the method of any one of claims 1 to 5.
12. Use of the recombinant cell of claim 11 for the preparation of a model pig for amyotrophic lateral sclerosis.
13. A porcine tissue or a porcine organ having the recombinant cell of claim 11.
14. Use of the recombinant cell of claim 11, the porcine tissue of claim 13, the porcine organ of claim 13, or the amyotrophic lateral sclerosis model porcine produced from the recombinant cell of claim 11, as (d 1) or (d 2) or (d 3) or (d 4) below:
(d1) Screening a medicament for treating amyotrophic lateral sclerosis;
(d2) Evaluating the drug effect of the drug for amyotrophic lateral sclerosis;
(d3) Evaluating the curative effect of gene therapy and/or cell therapy of amyotrophic lateral sclerosis;
(d4) The pathogenesis of amyotrophic lateral sclerosis was studied.
15. A protein, such as SEQ ID NO:3, respectively.
16. A protein comprising the following elements in order from upstream to downstream: signal peptide, molecular chaperone protein, protein tag, protease cleavage site, nuclear localization signal, cas9 protein, nuclear localization signal.
17. A specific plasmid comprising the following elements: the device comprises the following components from upstream to downstream in sequence: a promoter, an operator, a ribosome binding site, a PRONCN protein coding gene and a terminator; the PRONCN protein of claim 16.
CN202110555953.4A 2021-05-21 2021-05-21 Gene editing system for constructing ALS model pig nuclear transplantation donor cells with SOD1 gene mutation and application thereof Pending CN115232793A (en)

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