CN115109842A - 用于准确的平行定量核酸的高灵敏度方法 - Google Patents

用于准确的平行定量核酸的高灵敏度方法 Download PDF

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Publication number
CN115109842A
CN115109842A CN202210231400.8A CN202210231400A CN115109842A CN 115109842 A CN115109842 A CN 115109842A CN 202210231400 A CN202210231400 A CN 202210231400A CN 115109842 A CN115109842 A CN 115109842A
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probe
sequence
bridge oligonucleotide
target
barcode
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Pending
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CN202210231400.8A
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Chinese (zh)
Inventor
朱哈-佩卡·珀斯黑默
塔图·赫沃宁
马努·塔米宁
安托尼·科尔基亚科斯基
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Kenomir Health
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Kenomir Health
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    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6874—Methods for sequencing involving nucleic acid arrays, e.g. sequencing by hybridisation
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6806—Preparing nucleic acids for analysis, e.g. for polymerase chain reaction [PCR] assay
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6851—Quantitative amplification
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • C12Q1/6834—Enzymatic or biochemical coupling of nucleic acids to a solid phase
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844—Nucleic acid amplification reactions
    • C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2535/00—Reactions characterised by the assay type for determining the identity of a nucleotide base or a sequence of oligonucleotides
    • C12Q2535/122—Massive parallel sequencing
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2545/00—Reactions characterised by their quantitative nature
    • C12Q2545/10—Reactions characterised by their quantitative nature the purpose being quantitative analysis

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Biochemistry (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Genetics & Genomics (AREA)
  • Immunology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
CN202210231400.8A 2021-03-18 2022-03-10 用于准确的平行定量核酸的高灵敏度方法 Pending CN115109842A (zh)

Applications Claiming Priority (4)

Application Number Priority Date Filing Date Title
EP21163300.3A EP4060050B1 (en) 2021-03-18 2021-03-18 Highly sensitive methods for accurate parallel quantification of nucleic acids
EP21163300.3 2021-03-18
EP22152617.1 2022-01-21
EP22152617.1A EP4060053A1 (en) 2021-03-18 2022-01-21 Highly sensitive methods for accurate parallel quantification of nucleic acids

Publications (1)

Publication Number Publication Date
CN115109842A true CN115109842A (zh) 2022-09-27

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CN202210231400.8A Pending CN115109842A (zh) 2021-03-18 2022-03-10 用于准确的平行定量核酸的高灵敏度方法

Country Status (11)

Country Link
US (1) US11486003B2 (https=)
EP (2) EP4060050B1 (https=)
JP (2) JP7651497B2 (https=)
KR (1) KR20220130592A (https=)
CN (1) CN115109842A (https=)
CA (1) CA3149025A1 (https=)
DK (1) DK4060050T3 (https=)
ES (1) ES2942546T3 (https=)
FI (1) FI4060050T3 (https=)
PT (1) PT4060050T (https=)
TW (1) TWI864378B (https=)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US12435364B2 (en) * 2021-08-16 2025-10-07 10X Genomics, Inc. Probes comprising a split barcode region and methods of use
US20240068010A1 (en) * 2022-08-31 2024-02-29 Genomill Health Oy Highly sensitive methods for accurate parallel quantification of variant nucleic acids
CN117512070B (zh) * 2022-10-14 2024-08-16 深圳赛陆医疗科技有限公司 在载体上生成探针的方法和样品中靶物质的检测方法
US20250146063A1 (en) * 2023-11-02 2025-05-08 Genomill Health Oy Method for high-throughput detection of target nucleotide sequences
EP4610367B1 (en) * 2024-03-01 2026-02-04 Genomill Health Oy Methods for accurate parallel amplification, detection and quantification of nucleic acids

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110088297A (zh) * 2016-12-16 2019-08-02 Q-莱纳公司 锁式探针检测方法
CN111032881A (zh) * 2017-08-25 2020-04-17 瑞士联邦水科学与技术研究所 核酸的精确和大规模平行定量

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
EP1985714B1 (en) * 1998-03-25 2012-02-29 Olink AB Method and kit for detecting a target molecule employing at least two affinity probes and rolling circle replication of padlock probes
US9856521B2 (en) * 2015-01-27 2018-01-02 BioSpyder Technologies, Inc. Ligation assays in liquid phase
GB2570412A (en) * 2016-08-31 2019-07-24 Harvard College Methods of generating libraries of nucleic acid sequences for detection via fluorescent in situ sequencing
WO2018175779A1 (en) * 2017-03-22 2018-09-27 The Board Of Trustees Of The Leland Stanford Junior University Molecular profiling using proximity ligation-in situ hybridization

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110088297A (zh) * 2016-12-16 2019-08-02 Q-莱纳公司 锁式探针检测方法
CN111032881A (zh) * 2017-08-25 2020-04-17 瑞士联邦水科学与技术研究所 核酸的精确和大规模平行定量

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
SIMONA ADAMUSOVÁ等: "Bridge Capture Permits Cost-Efficient, Rapid and Sensitive Molecular Precision Diagnostics", MEDRXIV, 15 April 2024 (2024-04-15), pages 1 - 27 *
XIAOYIN CHEN等: "Efficient in situ barcode sequencing using padlock probe-based BaristaSeq", NUCLEIC ACIDS RESEARCH, vol. 46, no. 4, 28 November 2018 (2018-11-28), pages 22 *

Also Published As

Publication number Publication date
TW202305143A (zh) 2023-02-01
EP4060050B1 (en) 2023-02-15
PT4060050T (pt) 2023-05-02
EP4060050A1 (en) 2022-09-21
JP2025029149A (ja) 2025-03-05
FI4060050T3 (fi) 2023-05-04
TWI864378B (zh) 2024-12-01
CA3149025A1 (en) 2022-09-18
DK4060050T3 (da) 2023-03-27
US20220298569A1 (en) 2022-09-22
KR20220130592A (ko) 2022-09-27
US11486003B2 (en) 2022-11-01
ES2942546T3 (es) 2023-06-02
JP7651497B2 (ja) 2025-03-26
JP2022145606A (ja) 2022-10-04
EP4060053A1 (en) 2022-09-21

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