CN113234852A - Molecular marker and primer group for identifying wheat powdery mildew resistance and application - Google Patents
Molecular marker and primer group for identifying wheat powdery mildew resistance and application Download PDFInfo
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Abstract
The invention discloses a molecular marker for identifying wheat powdery mildew resistance, a primer group and application. The molecular marker is a KASP specific linkage marker which is developed by utilizing two pairs of KASP specific linkage markers of a QPm, saas-4AS flanking SNP probe AX-110406692 and AX-109926787, wherein the linkage markers are a KASP marker of KASP-AX-110406692 and a KASP marker of KASP-AX-109926787. The molecular marker, the primer set and the application for identifying the wheat powdery mildew resistance provided by the invention develop the molecular marker which can be used for the auxiliary selection of the wheat powdery mildew resistance, can quickly screen the wheat variety or the line with high powdery mildew resistance containing the gene for the disease-resistant breeding utilization of wheat, and obtains the wheat variety containing the wheat powdery mildew resistance gene, thereby not only saving the production cost, but also greatly improving the selection efficiency of wheat materials with powdery mildew resistance and greatly shortening the breeding cycle of the wheat disease-resistant variety; and the detection is convenient and quick and is not influenced by the environment.
Description
Technical Field
The invention relates to the field of molecular biology, in particular to a molecular marker for identifying wheat powdery mildew resistance, a primer group and application.
Background
Wheat powdery mildew is a disease caused by powdery mildew, Buchner burley of the Gramineae family, which occurs on wheat. Mainly harms leaves, and in severe cases, leaf sheaths, stalks and spikes are all infected. Yellow spots are seen in the disease part at the early stage of disease onset, the spots gradually develop into spots with the disease condition being serious, the spots are oval or round, a powdery mildew layer is arranged on the surface, the spots develop to white gray at the middle stage, the spots develop to light brown at the later stage, and a closed capsule shell is generated. When the disease condition is mild, the mildew spots are distributed dispersedly, and gradually expand into pieces as the disease condition worsens, and finally cover the whole leaves; the lower and surrounding tissues of the lesion are faded, the diseased leaves are yellow and withered early, and if the disease affects the stem and leaf sheath, the whole plant can be fallen down; the plants are short, small and weak, the ears are small, the thousand kernel weight is obviously reduced, and the wheat yield is finally influenced. Therefore, the discovery and the utilization of the new wheat powdery mildew resistance gene have important significance for wheat powdery mildew resistance breeding.
The research on wheat powdery mildew resistance genes in the prior art is not deep; no molecular marker for identifying wheat powdery mildew resistance is reported, and no breeding selection for wheat powdery mildew resistance by using the molecular marker is reported.
Disclosure of Invention
The invention aims to provide a molecular marker for identifying wheat powdery mildew resistance, a primer group and application, and aims to solve the technical problem that the prior art lacks of breeding selection for wheat powdery mildew resistance by utilizing the molecular marker.
In order to achieve the purpose, the invention provides the following technical scheme:
the invention provides a molecular marker for identifying wheat powdery mildew resistance based on QPm.saas-4AS gene, wherein QPm.saas-4AS is positioned in the interval of 1.06Mb on the end of chromosome 4AS, the molecular marker is two pairs of KASP specific linkage markers developed by utilizing QPm.saas-4AS gene flanking SNP probes AX-110406692 and AX-109926787, and the linkage markers are KASP markers of KASP-AX-110406692 and KASP markers of KASP-AX-109926787; the nucleotide sequences of the primer sets of KASP-AX-110406692 and KASP-AX-109926787 are respectively,
first, the KASP-AX-110406692 primer sequence is as follows:
FAM:GAAGGTGACCAAGTTCATGCTACTGAATAGTCTTTTTGGTGACAAA,
HEX:GAAGGTCGGAGTCAACGGATTCTGAATAGTCTTTTTGGTGACAAG,
COM:TTACATGTACCCATCCCATGAACC;
the second set of KASP-AX-109926787 primer sequences are as follows:
FAM:GAAGGTGACCAAGTTCATGCTTCCCCTTCTCCTTTTGTTTTCCTC,
HEX:GAAGGTCGGAGTCAACGGATTTCCCCTTCTCCTTTTGTTTTCCTT,
COM:AAAATCAGAGGAAATGAAAACATC。
further, said KASP-AX-110406692 and KASP-AX-109926787 are designed according to the probe sequences of AX-110406692 and AX-109926787, respectively, and said probe sequences of AX-110406692 and AX-109926787 are:
AX-110406692:
CTGTAGTTGTAACTGAATAGTCTTTTTGGTGACAA[A/G]GGTTCATGGGATGGGTACATGTAATTGATCACACG;
AX-109926787:
TATCAGTTTTTATCCCCTTCTCCTTTTGTTTTCCT[C/T]GATGTTTTCATTTCCTCTGATTTTTTGGTTTTGTT。
the preparation method of the molecular marker for identifying the wheat powdery mildew resistance provided by the invention comprises the following steps:
(1) construction of high-generation recombinant inbred line genetic population
Constructing a high-generation recombinant inbred line genetic population F8 by adopting a common cultivated wheat variety Sichuan wheat 104 with high powdery mildew resistance and a wheat variety Baimao with high susceptibility to powdery mildew;
(2) construction of genetic linkage maps
Performing whole genome scanning on the population by using a 50K high-density SNP chip, constructing a genetic linkage map, performing multi-point powdery mildew resistance identification on the genetic population and parents for many years, and positioning a powdery mildew resistance gene QPm.saas-4 AS;
(3) genetic mapping
Genetic localization is carried out on powdery mildew resistant gene QPm.saas-4AS, and the probe intervals are AX-110406692 and AX-109926787;
(4) obtaining molecular marker for identifying wheat powdery mildew resistance gene
Using qpm. saas-4AS site flanking probes AX-110406692 and AX-109926787 to develop two pairs of KASP specific linkage markers, KASP-AX-110406692 and KASP-AX-109926787;
the probe sequences of the AX-110406692 and AX-109926787 are respectively as follows:
AX-110406692:
CTGTAGTTGTAACTGAATAGTCTTTTTGGTGACAA[A/G]GGTTCATGGGATGGGTACATGTAATTGATCACACG;
AX-109926787:
TATCAGTTTTTATCCCCTTCTCCTTTTGTTTTCCT[C/T]GATGTTTTCATTTCCTCTGATTTTTTGGTTTTGTT。
further, in the step (3), the method for carrying out genetic localization on the powdery mildew resistance gene QPm.saas-4AS is a QTL localization method.
The primer group provided by the invention for identifying the molecular marker has the nucleotide sequences as follows:
first, the KASP-AX-110406692 primer sequence is as follows:
FAM:GAAGGTGACCAAGTTCATGCTACTGAATAGTCTTTTTGGTGACAAA,
HEX:GAAGGTCGGAGTCAACGGATTCTGAATAGTCTTTTTGGTGACAAG,
COM:TTACATGTACCCATCCCATGAACC;
the second set of KASP-AX-109926787 primer sequences are as follows:
FAM:GAAGGTGACCAAGTTCATGCTTCCCCTTCTCCTTTTGTTTTCCTC,
HEX:GAAGGTCGGAGTCAACGGATTTCCCCTTCTCCTTTTGTTTTCCTT,
COM:AAAATCAGAGGAAATGAAAACATC。
the invention provides a method for identifying wheat powdery mildew resistance genes, which comprises the following steps:
(1) extracting wheat genome DNA to be identified;
(2) carrying out quantitative PCR amplification on the DNA extracted in the step (1) by adopting a primer group of KASP-AX-86175290 and KASP-AX-86172908;
(3) and identifying the amplification product.
Further, in the step (2), when the quantitative PCR amplification is performed:
and (3) PCR reaction system: 2 μ l of DNA; KASP Master mix 5. mu.l; 3 mul of KASP primer group, and 3 primers of the primer group are mixed according to the volume ratio of FAM to HEX to COM =1 to 2; total reaction volume 10. mu.l;
PCR reaction procedure: pre-denaturation at 94 ℃ for 15 min; denaturation at 94 ℃ for 20sec, gradient renaturation/elongation at 61-55 ℃ for 60sec, reduction per cycle of 0.6 ℃, for 10 cycles; denaturation at 94 ℃ for 20sec, renaturation/elongation at 55 ℃ for 60sec, for 26 cycles; the KaSP-typed fluorescence data were read at 40 ℃ or lower.
The molecular marker provided by the invention is applied to identification of wheat powdery mildew resistance.
Based on the technical scheme, the embodiment of the invention can at least produce the following technical effects:
the molecular marker, the primer set and the application for identifying the wheat powdery mildew resistance provided by the invention develop the molecular marker which can be used for auxiliary selection of the wheat powdery mildew resistance, greatly improve the utilization efficiency of an important gene resource, and further can quickly screen the wheat variety or the strain with high powdery mildew resistance containing the gene for disease-resistant breeding utilization of wheat, so as to obtain the wheat variety containing the wheat powdery mildew resistance gene, thereby not only saving the production cost, but also greatly improving the selection efficiency of wheat materials with powdery mildew resistance and greatly shortening the breeding cycle of the wheat disease-resistant variety; and the detection is convenient and quick and is not influenced by the environment.
Drawings
FIG. 1 is a technical roadmap for an embodiment of the invention;
FIG. 2 shows the resistance reaction of the highly susceptible powdery mildew material barley mallow selected in example 1 and the highly powdery mildew resistant variety Chuan wheat 104 against wheat powdery mildew;
FIG. 3 is a typing chart of the detection of the specific molecular marker KASP-AX-110406692 by the fluorescent quantitative PCR instrument in example 2 of the present invention;
FIG. 4 is a typing chart of KASP-AX-109926787 as a specific molecular marker in example 2 of the present invention by using a fluorescence quantitative PCR instrument.
Detailed Description
As shown in fig. 1-4:
the powdery mildew resistance gene QPm.saas-4AS of the present invention is disclosed in Liu Z, Wang Q, Wan H, et al, QTL mapping for adult-plant resistance to powder family in Chinese elite common wheat Chuanmai104[ J ]. real Research Communications, 2020, 49(12): 1-10.
Example 1:
the preparation method of the molecular marker for identifying the wheat powdery mildew resistance provided by the invention comprises the following steps:
(1) construction of high-generation recombinant inbred line genetic population
Constructing a high-generation recombinant inbred line genetic population F8 by adopting a common cultivated wheat variety Sichuan wheat 104 with high powdery mildew resistance and a wheat variety Baimao with high susceptibility to powdery mildew;
(2) construction of genetic linkage maps
Performing whole genome scanning on the population by using a 50K high-density SNP chip, constructing a genetic linkage map, performing multi-point powdery mildew resistance identification on the genetic population and parents for many years, and positioning a powdery mildew resistance gene QPm.saas-4 AS;
(3) genetic mapping
Genetic localization is carried out on powdery mildew resistance gene QPm.saas-4AS through a QTL localization method, and the probe intervals are AX-110406692 and AX-109926787;
(4) obtaining molecular marker for identifying wheat powdery mildew resistance gene
Two pairs of KASP-specific linkage markers were developed using QPm. saas-4AS site flanking probes AX-110406692 and AX-109926787, which linkage markers are KASP-AX-110406692 and KASP-AX-109926787.
Example 2:
to verify KASP-AX-110406692 and KASP-AX-109926787 in example 1, mix reagents from Eigy technologies, Inc. were used as KASP-labeled primer detection reagents, and CFX384 Real-Time System from BIO-RAD was used as a quantitative PCR instrument; the phenotype identification of the powdery mildew resistance is to carry out grading identification on the infection degree of each material leaf by pathogenic bacteria; the detection of the specific marker is the typing detection through a fluorescent quantitative PCR instrument; the method specifically comprises the following steps:
(1) extracting the wheat genome DNA to be identified and subpackaging the wheat genome DNA to a quantitative PCR reaction plate;
(2) carrying out quantitative PCR amplification on the DNA extracted in the step (1) by adopting a primer group of KASP-AX-86175290 and KASP-AX-86172908;
the nucleotide sequences of the primer groups are respectively as follows:
first, the KASP-AX-110406692 primer sequence is as follows:
FAM:GAAGGTGACCAAGTTCATGCTACTGAATAGTCTTTTTGGTGACAAA,
HEX:GAAGGTCGGAGTCAACGGATTCTGAATAGTCTTTTTGGTGACAAG,
COM:TTACATGTACCCATCCCATGAACC;
the second set of KASP-AX-109926787 primer sequences are as follows:
FAM:GAAGGTGACCAAGTTCATGCTTCCCCTTCTCCTTTTGTTTTCCTC,
HEX:GAAGGTCGGAGTCAACGGATTTCCCCTTCTCCTTTTGTTTTCCTT,
COM:AAAATCAGAGGAAATGAAAACATC;
the quantitative PCR amplification method comprises the following steps: PCR amplification reaction and data observation and analysis were carried out using a fluorescence quantitative PCR instrument manufactured by BIO-RAD, and PCR amplification was carried out using Master mix reaction solution for KASP marker detection provided by LGC Biotechnology.
And (3) PCR reaction system: 2 μ l of DNA; KASP Master mix 5. mu.l; 3 mul of KASP primer group, and 3 primers of the primer group are mixed according to the volume ratio of FAM to HEX to COM =1 to 2; total reaction volume 10. mu.l;
PCR reaction procedure: pre-denaturation at 94 ℃ for 15 min; denaturation at 94 ℃ for 20sec, gradient renaturation/elongation at 61-55 ℃ for 60sec, reduction per cycle of 0.6 ℃, for 10 cycles; denaturation at 94 ℃ for 20sec, renaturation/elongation at 55 ℃ for 60sec, for 26 cycles; the KaSP-typed fluorescence data were read at 40 ℃ or lower.
(3) And identifying the amplification product.
According to the wheat powdery mildew resistance grading identification standard, the concrete grading standard is 0 grade and 0 grade; stage, stage 1, stage 2, stage 3, stage 4; wherein, the 0 grade is that the leaves have no infection trace and are represented as immunity, 0; the grade is that the leaves have no fresh spores but a small amount of necrotic spots, the grade 1 is that the leaves have a small amount of fresh spores but show high powdery mildew resistance, the grade 2 is that the leaves have a certain proportion of fresh spores but show medium powdery mildew resistance, the grade 3 is that the leaves have more fresh spores, show medium powdery mildew resistance, and the grade 4 is that the leaves are completely infected, show high powdery mildew resistance. The results of phenotype grading identification and detection of the infected degree of the parental leaves are shown in fig. 2, and show that the results of KASP marker detection are stable and reliable according to phenotype analysis and positioning results, and can be used for molecular detection of gene locus QPm.
Claims (8)
1. A molecular marker for identifying wheat powdery mildew resistance based on the gene locus qpm saas-4AS, which is located within the interval of 1.06Mb on the end of chromosome 4AS, characterized in that: the molecular marker is a KASP specific linkage marker which is developed by utilizing QPm, saas-4AS gene flanking SNP probes AX-110406692 and AX-109926787 and is a KASP marker of KASP-AX-110406692 and a KASP marker of KASP-AX-109926787; the nucleotide sequences of the primer sets of KASP-AX-110406692 and KASP-AX-109926787 are respectively,
first, the KASP-AX-110406692 primer sequence is as follows:
FAM:GAAGGTGACCAAGTTCATGCTACTGAATAGTCTTTTTGGTGACAAA,
HEX:GAAGGTCGGAGTCAACGGATTCTGAATAGTCTTTTTGGTGACAAG,
COM:TTACATGTACCCATCCCATGAACC;
the second set of KASP-AX-109926787 primer sequences are as follows:
FAM:GAAGGTGACCAAGTTCATGCTTCCCCTTCTCCTTTTGTTTTCCTC,
HEX:GAAGGTCGGAGTCAACGGATTTCCCCTTCTCCTTTTGTTTTCCTT,
COM:AAAATCAGAGGAAATGAAAACATC。
2. the molecular marker for identifying wheat powdery mildew resistance of claim 1, wherein: the KASP-AX-110406692 and KASP-AX-109926787 are designed according to the probe sequences of AX-110406692 and AX-109926787 respectively, and the probe sequences of AX-110406692 and AX-109926787 are respectively as follows:
AX-110406692:
CTGTAGTTGTAACTGAATAGTCTTTTTGGTGACAA[A/G]GGTTCATGGGATGGGTACATGTAATTGATCACACG;
AX-109926787:
TATCAGTTTTTATCCCCTTCTCCTTTTGTTTTCCT[C/T]GATGTTTTCATTTCCTCTGATTTTTTGGTTTTGTT。
3. the method for preparing a molecular marker for identifying wheat powdery mildew resistance according to claim 1 or 2, wherein: the method comprises the following steps:
(1) construction of high-generation recombinant inbred line genetic population
Constructing a high-generation recombinant inbred line genetic population F8 by adopting a common cultivated wheat variety Sichuan wheat 104 with high powdery mildew resistance and a wheat variety Baimao with high susceptibility to powdery mildew;
(2) construction of genetic linkage maps
Performing whole genome scanning on the population by using a 50K high-density SNP chip, constructing a genetic linkage map, performing multi-point powdery mildew resistance identification on the genetic population and parents for many years, and positioning a powdery mildew resistance gene QPm.saas-4 AS;
(3) genetic mapping
Genetic localization is carried out on powdery mildew resistant gene QPm.saas-4AS, and the probe intervals are AX-110406692 and AX-109926787;
(4) obtaining molecular marker for identifying wheat powdery mildew resistance gene
Two pairs of KASP-specific linkage markers were developed using QPm. saas-4AS site flanking probes AX-110406692 and AX-109926787, which linkage markers are KASP-AX-110406692 and KASP-AX-109926787.
4. The method for preparing a molecular marker for identifying wheat powdery mildew resistance according to claim 3, wherein the molecular marker comprises: in the step (3), the method for carrying out genetic positioning on the powdery mildew resistance gene QPm.saas-4AS is a QTL positioning method.
5. Primer set for identifying a molecular marker according to claim 1 or 2, characterized in that: the nucleotide sequences of the primer groups are respectively as follows:
first, the KASP-AX-110406692 primer sequence is as follows:
FAM:GAAGGTGACCAAGTTCATGCTACTGAATAGTCTTTTTGGTGACAAA,
HEX:GAAGGTCGGAGTCAACGGATTCTGAATAGTCTTTTTGGTGACAAG,
COM:TTACATGTACCCATCCCATGAACC;
the second set of KASP-AX-109926787 primer sequences are as follows:
FAM:GAAGGTGACCAAGTTCATGCTTCCCCTTCTCCTTTTGTTTTCCTC,
HEX:GAAGGTCGGAGTCAACGGATTTCCCCTTCTCCTTTTGTTTTCCTT,
COM:AAAATCAGAGGAAATGAAAACATC。
6. a method for identifying a wheat powdery mildew resistance gene is characterized in that: the method comprises the following steps:
(1) extracting wheat genome DNA to be identified;
(2) carrying out quantitative PCR amplification on the DNA extracted in the step (1) by adopting a primer group of KASP-AX-86175290 and KASP-AX-86172908;
(3) and identifying the amplification product.
7. The method for identifying wheat powdery mildew resistance gene of claim 6, which comprises: in the step (2), when quantitative PCR amplification is performed:
and (3) PCR reaction system: 2 μ l of DNA; KASP Master mix 5. mu.l; 3 mul of KASP primer group, and 3 primers of the primer group are mixed according to the volume ratio of FAM to HEX to COM =1 to 2; total reaction volume 10. mu.l;
PCR reaction procedure: pre-denaturation at 94 ℃ for 15 min; denaturation at 94 ℃ for 20sec, gradient renaturation/elongation at 61-55 ℃ for 60sec, reduction per cycle of 0.6 ℃, for 10 cycles; denaturation at 94 ℃ for 20sec, renaturation/elongation at 55 ℃ for 60sec, for 26 cycles; the KaSP-typed fluorescence data were read at 40 ℃ or lower.
8. Use of a molecular marker according to claim 1 or 2 for identifying wheat powdery mildew resistance.
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