CN113061655B - 一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 - Google Patents
一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 Download PDFInfo
- Publication number
- CN113061655B CN113061655B CN202110320031.5A CN202110320031A CN113061655B CN 113061655 B CN113061655 B CN 113061655B CN 202110320031 A CN202110320031 A CN 202110320031A CN 113061655 B CN113061655 B CN 113061655B
- Authority
- CN
- China
- Prior art keywords
- expression amount
- expression
- minus
- amount
- breast cancer
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 206010006187 Breast cancer Diseases 0.000 title claims abstract description 56
- 208000026310 Breast neoplasm Diseases 0.000 title claims abstract description 55
- 108090000623 proteins and genes Proteins 0.000 title claims abstract description 55
- 230000035945 sensitivity Effects 0.000 title claims abstract description 38
- 238000011227 neoadjuvant chemotherapy Methods 0.000 title claims abstract description 36
- 230000014509 gene expression Effects 0.000 claims abstract description 178
- 229930012538 Paclitaxel Natural products 0.000 claims abstract description 28
- 229960001592 paclitaxel Drugs 0.000 claims abstract description 28
- RCINICONZNJXQF-MZXODVADSA-N taxol Chemical compound O([C@@H]1[C@@]2(C[C@@H](C(C)=C(C2(C)C)[C@H](C([C@]2(C)[C@@H](O)C[C@H]3OC[C@]3([C@H]21)OC(C)=O)=O)OC(=O)C)OC(=O)[C@H](O)[C@@H](NC(=O)C=1C=CC=CC=1)C=1C=CC=CC=1)O)C(=O)C1=CC=CC=C1 RCINICONZNJXQF-MZXODVADSA-N 0.000 claims abstract description 28
- 229940045799 anthracyclines and related substance Drugs 0.000 claims abstract description 26
- 238000007477 logistic regression Methods 0.000 claims abstract description 8
- 238000001514 detection method Methods 0.000 claims abstract description 4
- 101001050476 Homo sapiens Tyrosine-protein kinase ITK/TSK Proteins 0.000 claims description 9
- 102100023345 Tyrosine-protein kinase ITK/TSK Human genes 0.000 claims description 9
- 102100027259 Ena/VASP-like protein Human genes 0.000 claims description 8
- 101001057143 Homo sapiens Ena/VASP-like protein Proteins 0.000 claims description 8
- XOYCLJDJUKHHHS-LHBOOPKSSA-N (2s,3s,4s,5r,6r)-6-[[(2s,3s,5r)-3-amino-5-(5-methyl-2,4-dioxopyrimidin-1-yl)oxolan-2-yl]methoxy]-3,4,5-trihydroxyoxane-2-carboxylic acid Chemical compound O=C1NC(=O)C(C)=CN1[C@@H]1O[C@H](CO[C@H]2[C@@H]([C@@H](O)[C@H](O)[C@H](O2)C(O)=O)O)[C@@H](N)C1 XOYCLJDJUKHHHS-LHBOOPKSSA-N 0.000 claims description 7
- 102100027205 B-cell antigen receptor complex-associated protein alpha chain Human genes 0.000 claims description 7
- 102100023701 C-C motif chemokine 18 Human genes 0.000 claims description 7
- 102100040579 Guanidinoacetate N-methyltransferase Human genes 0.000 claims description 7
- 101000914489 Homo sapiens B-cell antigen receptor complex-associated protein alpha chain Proteins 0.000 claims description 7
- 101000978371 Homo sapiens C-C motif chemokine 18 Proteins 0.000 claims description 7
- 101000893897 Homo sapiens Guanidinoacetate N-methyltransferase Proteins 0.000 claims description 7
- 101000596234 Homo sapiens T-cell surface protein tactile Proteins 0.000 claims description 7
- 102100035268 T-cell surface protein tactile Human genes 0.000 claims description 7
- 102100025277 C-X-C motif chemokine 13 Human genes 0.000 claims description 6
- 102100037948 GTP-binding protein Di-Ras3 Human genes 0.000 claims description 6
- 101000858064 Homo sapiens C-X-C motif chemokine 13 Proteins 0.000 claims description 6
- 101000951235 Homo sapiens GTP-binding protein Di-Ras3 Proteins 0.000 claims description 6
- 101100125778 Homo sapiens IGHM gene Proteins 0.000 claims description 6
- 102100039352 Immunoglobulin heavy constant mu Human genes 0.000 claims description 6
- 101710100963 Receptor tyrosine-protein kinase erbB-4 Proteins 0.000 claims description 6
- 102100029981 Receptor tyrosine-protein kinase erbB-4 Human genes 0.000 claims description 6
- 102100030385 Granzyme B Human genes 0.000 claims description 5
- 101001009603 Homo sapiens Granzyme B Proteins 0.000 claims description 5
- 101001053641 Homo sapiens Plasma serine protease inhibitor Proteins 0.000 claims description 5
- 101000685298 Homo sapiens Protein sel-1 homolog 3 Proteins 0.000 claims description 5
- 101000697600 Homo sapiens Serine/threonine-protein kinase 32B Proteins 0.000 claims description 5
- 101000701446 Homo sapiens Stanniocalcin-2 Proteins 0.000 claims description 5
- 101000879389 Homo sapiens Syntabulin Proteins 0.000 claims description 5
- 102100024078 Plasma serine protease inhibitor Human genes 0.000 claims description 5
- 102100023163 Protein sel-1 homolog 3 Human genes 0.000 claims description 5
- 102100028030 Serine/threonine-protein kinase 32B Human genes 0.000 claims description 5
- 102100030510 Stanniocalcin-2 Human genes 0.000 claims description 5
- 102100037396 Syntabulin Human genes 0.000 claims description 5
- 102100026007 ADAM DEC1 Human genes 0.000 claims description 4
- 102100035688 Guanylate-binding protein 1 Human genes 0.000 claims description 4
- 101000719904 Homo sapiens ADAM DEC1 Proteins 0.000 claims description 4
- 101001001336 Homo sapiens Guanylate-binding protein 1 Proteins 0.000 claims description 4
- 101000891579 Homo sapiens Microtubule-associated protein tau Proteins 0.000 claims description 4
- 101001091088 Homo sapiens Prorelaxin H2 Proteins 0.000 claims description 4
- 102100040243 Microtubule-associated protein tau Human genes 0.000 claims description 4
- 102100034949 Prorelaxin H2 Human genes 0.000 claims description 4
- 108091000521 Protein-Arginine Deiminase Type 2 Proteins 0.000 claims description 4
- 102100035735 Protein-arginine deiminase type-2 Human genes 0.000 claims description 4
- 239000003153 chemical reaction reagent Substances 0.000 claims description 4
- 102000001301 EGF receptor Human genes 0.000 claims description 3
- 101000851181 Homo sapiens Epidermal growth factor receptor Proteins 0.000 claims description 3
- 102100033423 GDNF family receptor alpha-1 Human genes 0.000 claims description 2
- 102100023043 Heat shock protein beta-8 Human genes 0.000 claims description 2
- 101000997961 Homo sapiens GDNF family receptor alpha-1 Proteins 0.000 claims description 2
- 101001077604 Homo sapiens Insulin receptor substrate 1 Proteins 0.000 claims description 2
- 101150064744 Hspb8 gene Proteins 0.000 claims description 2
- 102100025087 Insulin receptor substrate 1 Human genes 0.000 claims description 2
- -1 LOC102723479 Proteins 0.000 claims description 2
- 108020004711 Nucleic Acid Probes Proteins 0.000 claims description 2
- 239000002853 nucleic acid probe Substances 0.000 claims description 2
- 238000012163 sequencing technique Methods 0.000 claims description 2
- 102100035989 E3 SUMO-protein ligase PIAS1 Human genes 0.000 claims 2
- 101100522841 Drosophila melanogaster pygo gene Proteins 0.000 claims 1
- 101150022010 gam gene Proteins 0.000 claims 1
- 206010028980 Neoplasm Diseases 0.000 abstract description 12
- 238000002512 chemotherapy Methods 0.000 abstract description 12
- 238000011282 treatment Methods 0.000 abstract description 12
- 230000008901 benefit Effects 0.000 abstract description 5
- 238000006243 chemical reaction Methods 0.000 abstract description 4
- 238000012549 training Methods 0.000 description 16
- 238000012795 verification Methods 0.000 description 14
- 201000011510 cancer Diseases 0.000 description 10
- 230000004547 gene signature Effects 0.000 description 9
- 101001012157 Homo sapiens Receptor tyrosine-protein kinase erbB-2 Proteins 0.000 description 8
- 102100030086 Receptor tyrosine-protein kinase erbB-2 Human genes 0.000 description 8
- 238000000034 method Methods 0.000 description 7
- 238000011156 evaluation Methods 0.000 description 5
- 101150055869 25 gene Proteins 0.000 description 4
- 239000002671 adjuvant Substances 0.000 description 4
- 239000000090 biomarker Substances 0.000 description 4
- 230000000694 effects Effects 0.000 description 4
- 238000010200 validation analysis Methods 0.000 description 4
- 229960004397 cyclophosphamide Drugs 0.000 description 3
- 239000003550 marker Substances 0.000 description 3
- 238000012216 screening Methods 0.000 description 3
- AOJJSUZBOXZQNB-TZSSRYMLSA-N Doxorubicin Chemical compound O([C@H]1C[C@@](O)(CC=2C(O)=C3C(=O)C=4C=CC=C(C=4C(=O)C3=C(O)C=21)OC)C(=O)CO)[C@H]1C[C@H](N)[C@H](O)[C@H](C)O1 AOJJSUZBOXZQNB-TZSSRYMLSA-N 0.000 description 2
- 238000011226 adjuvant chemotherapy Methods 0.000 description 2
- 238000002790 cross-validation Methods 0.000 description 2
- 201000010099 disease Diseases 0.000 description 2
- 208000037265 diseases, disorders, signs and symptoms Diseases 0.000 description 2
- 229940079593 drug Drugs 0.000 description 2
- 239000003814 drug Substances 0.000 description 2
- 239000012634 fragment Substances 0.000 description 2
- 230000007170 pathology Effects 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 239000000523 sample Substances 0.000 description 2
- 101150096316 5 gene Proteins 0.000 description 1
- CMSMOCZEIVJLDB-UHFFFAOYSA-N Cyclophosphamide Chemical compound ClCCN(CCCl)P1(=O)NCCCO1 CMSMOCZEIVJLDB-UHFFFAOYSA-N 0.000 description 1
- 206010058467 Lung neoplasm malignant Diseases 0.000 description 1
- 108091054455 MAP kinase family Proteins 0.000 description 1
- 102000043136 MAP kinase family Human genes 0.000 description 1
- 238000008149 MammaPrint Methods 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 230000000973 chemotherapeutic effect Effects 0.000 description 1
- 229940044683 chemotherapy drug Drugs 0.000 description 1
- 238000009096 combination chemotherapy Methods 0.000 description 1
- 230000034994 death Effects 0.000 description 1
- 231100000517 death Toxicity 0.000 description 1
- 238000010586 diagram Methods 0.000 description 1
- 230000004069 differentiation Effects 0.000 description 1
- 229960004679 doxorubicin Drugs 0.000 description 1
- 101150104611 dx gene Proteins 0.000 description 1
- 238000002474 experimental method Methods 0.000 description 1
- 230000036541 health Effects 0.000 description 1
- 230000006872 improvement Effects 0.000 description 1
- 230000007774 longterm Effects 0.000 description 1
- 201000005202 lung cancer Diseases 0.000 description 1
- 208000020816 lung neoplasm Diseases 0.000 description 1
- 210000001165 lymph node Anatomy 0.000 description 1
- 230000036210 malignancy Effects 0.000 description 1
- 230000004048 modification Effects 0.000 description 1
- 238000012986 modification Methods 0.000 description 1
- 230000001575 pathological effect Effects 0.000 description 1
- 238000003068 pathway analysis Methods 0.000 description 1
- 239000000825 pharmaceutical preparation Substances 0.000 description 1
- 230000000144 pharmacologic effect Effects 0.000 description 1
- 230000003234 polygenic effect Effects 0.000 description 1
- 238000004393 prognosis Methods 0.000 description 1
- 238000000611 regression analysis Methods 0.000 description 1
- 230000000241 respiratory effect Effects 0.000 description 1
- 238000002644 respiratory therapy Methods 0.000 description 1
- 230000004044 response Effects 0.000 description 1
- 238000011272 standard treatment Methods 0.000 description 1
- 238000006467 substitution reaction Methods 0.000 description 1
- 238000002560 therapeutic procedure Methods 0.000 description 1
- 210000001519 tissue Anatomy 0.000 description 1
- 231100000331 toxic Toxicity 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 231100000419 toxicity Toxicity 0.000 description 1
- 230000001988 toxicity Effects 0.000 description 1
- 230000035899 viability Effects 0.000 description 1
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
- C12Q1/6886—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/158—Expression markers
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Analytical Chemistry (AREA)
- General Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Biophysics (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Immunology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Pathology (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Medical Informatics (AREA)
- Theoretical Computer Science (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Microbiology (AREA)
- Physiology (AREA)
- General Engineering & Computer Science (AREA)
- Biochemistry (AREA)
- Oncology (AREA)
- Hospice & Palliative Care (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
本发明属于肿瘤基因检测技术领域,具体涉及一组用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的基因标签及其应用。在本发明中,基于LASSO逻辑回归获得与乳腺癌新辅助化疗敏感性相关的25个基因构成的基因标签,计算预测包含基因表达量的评分可以准确地预测乳腺癌患者使用紫杉醇和蒽环新辅助化疗的敏感性,预测患者对治疗的反应,甄别患者是否从化疗中获益,从而指导乳腺癌新辅助化疗方案的选择,避免过度治疗,并降低医疗成本。
Description
技术领域
本发明属于肿瘤基因检测技术领域,具体涉及一组用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的由25个基因表达量所构成的基因标签及其应用。
背景技术
2020年全球最新癌症数据显示,乳腺癌取代肺癌成为全球第一大癌,发病率全球第一,死亡率位居女性癌症死亡的首位,严重威胁女性生命健康(International Agencyfor Research on Cancer:latest global cancer data:cancer burden rises to19.3million new cases and 10.0million cancer deaths in 2020,2020)。乳腺癌是一种生物学特征高度异质性的恶性肿瘤,根据分子分型不同具有不同的临床特征、治疗反应和预后(Rouzier R,Perou CM,Symmans WF,et al:breast cancer molecular subtypesrespond differently to preoperative chemotherapy.clin cancer res 11:5678-85,2005)。预测乳腺癌的治疗敏感性,选择最有效的治疗方法以避免过度治疗,是乳腺癌精准治疗的基础。
评价新辅助化疗的敏感性是临床实践中一项重要任务。新辅助化疗后获得病理完全缓解(pCR)的患者比残留疾病(RD)患者表现出更好的长期无病生存能力(Hess KR,Anderson K,Symmans WF,et al:Pharmacogenomic predictor of sensitivity topreoperative chemotherapy with paclitaxel and fluorouracil,doxorubicin,andcyclophosphamide in breast cancer.J Clin Oncol 24:4236-44,2006)。以紫杉醇和蒽环为基础的新辅助化疗是乳腺癌的标准治疗方案,但文献报道不同的乳腺癌患者使用该方案的pCR率仅为6%-30%(Gonzalez-Angulo AM,Iwamoto T,Liu S,et al:Geneexpression,molecular class changes,and pathway analysis after neoadjuvantsystemic therapy for breast cancer.Clin Cancer Res 18:1109-19,2012)。识别哪些患者会获得pCR从治疗中受益,哪些患者治疗获益的可能性很低或没有,使他们规避该方案化疗的毒性,更早地应用替代方法非常重要。
文献已报道有多种生物标志物可以预测化疗疗效,但多数只能预测对单个药物的敏感性。国外有学者开发出多基因生物标志物(基因标签)如Oncotype Dx,MammaPrint,PAM50,EndoPredict,Genomic Grade Index(GGI)来预测联合化疗是否可减少患者复发风险(Kwa M,Makris A,Esteva FJ:Clinical utility of gene-expression signatures inearly stage breast cancer.Nat Rev Clin Oncol 14:595-610,2017)。但这些方法预测化疗疗效不理想,临床应用价值低。其中仅Oncotype Dx基因标签被美国国家综合癌症网络(NCCN)乳腺癌小组推荐用于淋巴结阴性乳腺癌以识别哪些患者需给予辅助化疗来降低复发风险。但迄今为止,还没有开发出临床可用的预测乳腺癌新辅助化疗效果,即预测能否获得病理完全缓解(pCR)),用于指导乳腺癌患者选择化疗方案的基因标签。
发明内容
为了解决上述技术问题,本发明的目的之一在于提供一组用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的基因标签。
为了实现本发明的目的,本发明采用了以下技术方案:
一组用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的基因标签,该基因标签由ADAMDEC1,CCL18,CD79A,CD96,CXCL13,DIRAS3,ERBB4,EVL,GAMT,GBP1,GFRA1,GZMB,HSPB8,IGHM,IRS1,ITK,LOC102723479,MAPT,PADI2,RLN2,SEL1L3,SERPINA5,STC2,STK32B和SYBU共25个基因组成。
进一步的,以LASSO逻辑回归模型构建包含所述基因标签中各基因表达量的用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式。
进一步的,用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值=ADAMDEC1表达量×(0.0032~0.0033)+CCL18表达量×(0.0457~0.0458)+CD79A表达量×(8.6115~8.6116)+CD96表达量×(6.2220~6.2221)+CXCL13表达量×(-0.5851~-0.5852)+DIRAS3表达量×(-6.0819~-6.0820)+ERBB4表达量×(1.7290~1.7291)+EVL表达量×(-1.7036~-1.7037)+GAMT表达量×(-8.8489~-8.8490)+GBP1表达量×(-0.7646~-0.7647)+GFRA1表达量×(-0.1159~-0.1160)+GZMB表达量×(-0.0752~-0.0753)+HSPB8表达量×(-1.2886~-1.2887)+IGHM表达量×(-1.3731~-1.3732)+IRS1表达量×(0.2500~0.2501)+ITK表达量×(-2.3029~-2.3030)+LOC102723479表达量×(0.3854~0.3855)+MAPT表达量×(0.2861~0.2862)+PADI2表达量×(0.7831~0.7832)+RLN2表达量×(-1.5620~-1.5621)+SEL1L3表达量×(-2.9842~-2.9843)+SERPINA5表达量×(0.2565~0.2566)+STC2表达量×(0.4303~0.4304)+STK32B表达量×(-1.2839~-1.2840)+SYBU表达量×(-0.7062~-0.7063)。式中,表达量没有单位。
进一步的,用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值=ADAMDEC1表达量×0.00321747620626765+CCL18表达量×0.0457079749167309+CD79A表达量×8.61152358256599+CD96表达量×6.22205851428899+CXCL13表达量×(-0.585126092824241)+DIRAS3表达量×(-6.08198493202845)+ERBB4表达量×1.72908010036751+EVL表达量×(-1.70368931131805)+GAMT表达量×(-8.84896004120253)+GBP1表达量×(-0.764626193845283)+GFRA1表达量×(-0.115908259316488)+GZMB表达量×(-0.0752619689246736)+HSPB8表达量×(-1.28866942797256)+IGHM表达量×(-1.37319937849059)+IRS1表达量×0.250096649476748+ITK表达量×(-2.30297033083433)+LOC102723479表达量×0.385454564188641+MAPT表达量×0.286187494306212+PADI2表达量×0.783128470665541+RLN2表达量×(-1.56204367828805)+SEL1L3表达量×(-2.98426861278556)+SERPINA5表达量×0.25651424658033+STC2表达量×0.430345120497431+STK32B表达量×(-1.28399430856461)+SYBU表达量×(-0.706271090221699),式中,表达量没有单位。
本发明的目的之二在于提供上述用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的基因标签的应用,包括以下一种或几种:制备预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的定量基因标签表达量的试剂,制备预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的定量基因标签表达量的系统或装置。
进一步的,所述定量基因标签表达量使用基因芯片或二代高通测序检测或PCR,所述定量基因标签表达量的试剂为核酸探针或引物。
进一步的,所述定量基因标签表达量由LASSO逻辑回归模型构建用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式,该评分公式与前述一致,其进一步的公式与前述一致。
本发明的有益效果在于:
1.本发明利用LASSO逻辑回归,构建了一组由25个基因构成的基因标签。该模型预测能力优于以往文献报道的预测模型,如以GGI和临床变量建立的预测模型AUC为0.735,基于30基因的预测模型在初始数据集中的预测AUC为0.877,但再次验证时AUC仅为0.711(Liedtke C,Hatzis C,Symmans WF,et al:Genomic grade index is associated withresponse to chemotherapy in patients with breast cancer.J Clin Oncol 27:3185-91,2009)(Hess KR,Anderson K,Symmans WF,et al:Pharmacogenomic predictor ofsensitivity to preoperative chemotherapy with paclitaxel and fluorouracil,doxorubicin,and cyclophosphamide in breast cancer.JClin Oncol 24:4236-44,2006)(Tabchy A,Valero V,Vidaurre T,et al:Evaluation of a30-gene paclitaxel,fluorouracil,doxorubicin,and cyclophosphamide chemotherapy response predictorin a multicenter randomized trial in breast cancer.Clin Cancer Res 16:5351-61,2010)。本发明通过对训练组建模和多个验证组的重复验证,都表现出良好的预测效果。因此更有潜力用于临床指导乳腺癌新辅助化疗方案的选择,甄别患者是否从新辅助化疗中获益,避免过度治疗、降低医疗成本,以期达到精准治疗和个体化用药的目的。
2.本发明的内容将有助于甄别具有“pCR潜能”的乳腺癌患者,做到提前预测治疗获益,从而对大部分“无效者”更早应用替代方法,可使患者免于新辅助化疗的毒副作用。
附图说明
图1中图1A是本发明LASSO回归预测模型构建十折交叉验证筛选模型参数,获得预测标志物构建基因标签;图1B为各预测标志物在训练组的回归系数。
图2是基于本发明的基因标签的预测评分模型在训练组和验证组预测pCR和RD组的ROC曲线图。训练组(Training set);验证组1(Test1 set);验证组2(Test2 set);验证组3(Test3 set);验证组4(Test4 set)。
图3是基于本发明的基因标签的预测评分模型在训练组和验证组对pCR和RD组的区分。从图上可以看出,pCR组预测评分明显高于RD组。其中A为训练组,n=115;B为验证组1,n=74;C为验证组2,n=207;D为验证组3,n=227;E为验证组4,n=121。
图4是基于本发明的分子标签的预测评分模型在训练组和验证组中对不同乳腺癌亚型的区分。从图上可以看出,乳腺癌HER2阳性(HR阴性)和TNBC亚型的预测评分高于HER2阳性(HR阳性)和Luminal(A/B)亚型。其中A为训练组,n=115;B为验证组1,n=74;C为验证组2,n=207;D为验证组3,n=227;E为验证组4,n=121。
具体实施方式
下面结合实验,对本发明的技术方案做出更为具体的说明:
实施例1:病例数据集搜集和差异基因筛选
发明人选取了744份乳腺癌新辅助治疗患者的样本。这些患者均接受紫杉醇和氟尿嘧啶-多柔比星-环磷酰胺(T/FAC)或紫杉醇和多柔比星-环磷酰胺(T/AC)新辅助化疗,分别来自GEO数据库不同平台的5个基因表达数据集GSE32646(芯片平台GPL570),GSE20271(芯片平台GPL96),GSE20194(芯片平台GPL570),GSE25055(芯片平台GPL96),GSE41998(芯片平台GPL571)。除GSE25055数据集只含HER2阴性乳腺癌,其他数据集包含乳腺癌所有类型。
发明人以adjusted P<0.05,|log2 FC|>0.6为标准,筛选GSE32646和GSE20271数据集中pCR组和RD组的差异基因分别为238个和224个,取交集得到共同的差异基因54个。
实施例2:乳腺癌紫杉醇和蒽环新辅助化疗敏感性预测标志物的发现
使用LASSO方法通过最小标准的部分似然偏差来选择预测T/FAC新辅助化疗pCR的最佳生物标志物。以十折交叉验证计算分组分类,通过二分类逻辑回归得到AUC曲线,因此,LASSO方法给每个签名赋一个回归系数。在此基础上,利用回归系数构造一个评分系统,对所选签名的值进行加权。发明人取GSE32646数据集的54个共同差异基因作为训练组(Training set),共115例患者,T/FAC新辅方案化疗后,pCR患者27例,占23.48%,RD患者88例,占76.52%。利用R语言“glmnet”软件包对训练组中的54个共同差异基因进行LASSO回归分析,如图1A所示,根据最优惩罚值lambda.min=0.000798599,取非零回归系数的基因作为预测pCR的最佳生物标志物,筛选出与乳腺癌紫杉醇和蒽环新辅助化疗敏感性预测最为相关的25个基因,将非零回归系数代入公式,系数如图1B所示,构建基因标签预测模型,筛选出与乳腺癌紫杉醇和蒽环新辅助化疗敏感性预测最为相关的25个基因构建基因标签预测模型。发明人将这组25个基因构成的基因标签命名为25-Gene标签(25-genesignature),以此构建模型的预测评分计算公式为:
预测评分=Expgene1×Coef1+Expgene2×Coef2+Expgene3×Coef3+…
其中“Coef”是gene的回归系数,由LASSO逻辑回归得到,“Expgene”表示gene的表达量。基于此公式,
25-Gene标签预测评分即分值=ADAMDEC1表达量×0.00321747620626765+CCL18表达量×0.0457079749167309+CD79A表达量×8.61152358256599+CD96表达量×6.22205851428899+CXCL13表达量×(-0.585126092824241)+DIRAS3表达量×(-6.08198493202845)+ERBB4表达量×1.72908010036751+EVL表达量×(-1.70368931131805)+GAMT表达量×(-8.84896004120253)+GBP1表达量×(-0.764626193845283)+GFRA1表达量×(-0.115908259316488)+GZMB表达量×(-0.0752619689246736)+HSPB8表达量×(-1.28866942797256)+IGHM表达量×(-1.37319937849059)+IRS1表达量×0.250096649476748+ITK表达量×(-2.30297033083433)+LOC102723479表达量×0.385454564188641+MAPT表达量×0.286187494306212+PADI2表达量×0.783128470665541+RLN2表达量×(-1.56204367828805)+SEL1L3表达量×(-2.98426861278556)+SERPINA5表达量×0.25651424658033+STC2表达量×0.430345120497431+STK32B表达量×(-1.28399430856461)+SYBU表达量×(-0.706271090221699)。式中,表达量没有单位。
进一步,使用R语言中的pROC包绘制ROC曲线,如图2所示。训练组(Training set)的模型评价指标ROC(receiver operating characteristic,受试者工作特征)以曲线下面积(AUC)为1.0,准确性(accuracy,AC)为1.0,敏感度(sensitivity,SE)为1.0,特异度(specificity,SP)为1.0,阳性预测值(positive predictive value,PPV)为1.0,阴性预测值(negative predictive value,NPV)为1.0评价模型的性能,具有非常好的预测能力。
实施例3:预测模型的验证
发明人使用不同平台的4个数据集对这组包含25个基因的基因标签所构建的预测模型进行了验证。即通过25个基因的表达量来计算每个样本的预测评分,通过受试者工作特征ROC曲线的各项指标来评价其对pCR与RD样本的区分能力。验证结果如下:
GSE20271验证组1(Test1 set)共74例患者,T/FAC新辅方案化疗后,pCR患者17例(22.97%),RD患者57例(77.03%),根据模型评分预测pCR患者14例(18.92%),RD患者60例(81.08%),模型评价指标AUC为0.9071,AC为0.9054,SE为0.7059,SP为0.9649,PPV为0.8571,NPV为0.9167,准确度良好。
GSE20194验证组2(Test2 set)的207例患者,T/FAC新辅方案化疗后,pCR患者46例(22.22%),RD患者161例(77.78%),根据模型评分预测pCR患者48例(23.19%),RD患者159例(76.81%%),模型评价指标AUC为0.9683,AC为0.9614,SE为0.9348,SP为0.9689,PPV为0.8958,NPV为0.9811,准确度良好。
GSE25055验证组3(Test3 set)的227例患者,T/FAC新辅方案化疗后,pCR患者43例(18.94%),RD患者184例(81.06%),根据模型评分预测pCR患者53例(23.35%),RD患者174例(76.65%),模型评价指标AUC为0.9151,AC为0.8722,SE为0.7727,SP为0.8962,PPV为0.6415,NPV为0.9425,准确度良好。
GSE41998验证组4(Test4 set)的121例患者,T/AC新辅方案化疗后,pCR患者34例(28.10%),RD患者87例(71.90%),根据模型评分预测pCR患者27例(22.31%),RD患者94例(77.69%),模型评价指标AUC为0.735,AC为0.7107,SE为0.3824,SP为0.8391,PPV为0.4815,NPV为0.7766,准确度良好。
由上述数据可以看出,本预测模型的预测能力在不同平台来源的4个芯片数据集中得到验证,包括3个T/FAC数据集和1个T/AC数据集。基于T/FAC和T/AC两种乳腺癌新辅助方案所用化疗药物都是以紫杉醇和蒽环为基础,尽管T/FAC的模型参数比T/AC略高,但都表现出较好的预测能力。另外,GSE25055数据集只包含HER2阴性亚型的数据,但该模型对HER2阴性乳腺癌也有良好预测结果(AUC=0.9151),表明该预测模型不仅可以作为不区分亚型的乳腺癌新辅助化疗的普遍预测,也可以精确用于乳腺癌的某一种亚型,如HER2阴性亚型的化疗敏感性预测。
如图3所示,本发明的基因标签的预测评分模型在训练组和验证组可对pCR和RD组有效区分,pCR组预测评分明显高于RD组。如图4所示,本发明的分子标签的预测评分模型在训练组和验证组中可对不同乳腺癌亚型的区分,乳腺癌HER2阳性(HR阴性)和TNBC亚型的预测评分高于HER2阳性(HR阳性)和Luminal(A/B)亚型。这也和临床数据一致。图3和4的结果进一步证明模型可有效预测pCR。
综上所述,基于AUC、AC、SE、SP、PPV和NPV值,该模型在不同数据集平台和不同乳腺癌亚型上表现出良好的预测能力和泛化能力,具有良好的临床应用潜力。
以上实施方式仅用以说明本发明的技术方案,而并非对本发明的限制;尽管参照前述实施方式对本发明进行了详细的说明,本领域的普通技术人员应当理解:凡在本发明创造的精神和原则之内所作的任何修改、等同替换和改进等,均应包含在本发明创造的保护范围之内。
Claims (9)
1.一组用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的基因标签,该标签由25个基因构成,所述基因名称分别为:ADAMDEC1,CCL18,CD79A,CD96,CXCL13,DIRAS3,ERBB4,EVL,GAMT,GBP1,GFRA1,GZMB,HSPB8,IGHM,IRS1,ITK,LOC102723479,MAPT,PADI2,RLN2,SEL1L3,SERPINA5,STC2,STK32B 和SYBU。
2.如权利要求1所述的基因标签,其特征在于:以LASSO逻辑回归模型构建包含所述基因标签中各基因表达量的用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式。
3.如权利要求1或2所述的基因标签,其特征在于:用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值 = ADAMDEC1表达量×(0.0032~0.0033)+ CCL18表达量×(0.0457~0.0458)+ CD79A表达量×(8.6115~8.6116)+ CD96表达量×(6.2220~6.2221)+CXCL13表达量×(-0.5851~ -0.5852) + DIRAS3表达量×(-6.0819~ -6.0820) + ERBB4表达量×(1.7290~1.7291)+ EVL表达量×(-1.7036~ -1.7037) + GAMT表达量×(-8.8489~-8.8490) + GBP1表达量×(-0.7646~ -0.7647) + GFRA1表达量×(-0.1159~ -0.1160) +GZMB表达量×(-0.0752~ -0.0753) + HSPB8表达量×(-1.2886~ -1.2887) + IGHM表达量×(-1.3731~ -1.3732) + IRS1表达量×(0.2500 ~0.2501)+ ITK表达量×(-2.3029~ -2.3030) + LOC102723479表达量×(0.3854~0.3855)+ MAPT表达量×(0.2861~ 0.2862)+PADI2表达量×(0.7831~0.7832)+ RLN2表达量×(-1.5620~ -1.5621) + SEL1L3表达量×(-2.9842~ -2.9843)+ SERPINA5表达量×(0.2565~ 0.2566)+ STC2表达量×(0.4303~0.4304)+ STK32B表达量×(-1.2839~ -1.2840) + SYBU表达量×(-0.7062~ -0.7063)。
4.如权利要求3所述的基因标签,其特征在于:用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值 = ADAMDEC1表达量×0.00321747620626765 + CCL18表达量×0.0457079749167309+ CD79A表达量×8.61152358256599 + CD96表达量×6.22205851428899 + CXCL13表达量×(-0.585126092824241) + DIRAS3表达量×(-6.08198493202845) + ERBB4表达量×1.72908010036751 + EVL表达量×(-1.70368931131805) + GAMT表达量×(-8.84896004120253) + GBP1表达量×(-0.764626193845283) + GFRA1表达量×(-0.115908259316488) + GZMB表达量×(-0.0752619689246736) + HSPB8表达量×(-1.28866942797256) + IGHM表达量×(-1.37319937849059) + IRS1表达量×0.250096649476748 + ITK表达量×(-2.30297033083433) + LOC102723479表达量×0.385454564188641 + MAPT表达量×0.286187494306212 + PADI2表达量×0.783128470665541 + RLN2表达量×(-1.56204367828805) + SEL1L3表达量×(-2.98426861278556) + SERPINA5表达量×0.25651424658033 + STC2表达量×0.430345120497431 + STK32B表达量×(-1.28399430856461) + SYBU表达量×(-0.706271090221699)。
5.一种如权利要求1所述的基因标签的应用,其特征在于:所述应用为制备预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的定量基因标签表达量的试剂,或制备预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的定量基因标签表达量的系统或装置。
6.如权利要求5所述的应用,其特征在于:所述定量基因标签表达量使用基因芯片或二代高通测序检测或PCR,所述定量基因标签表达量的试剂为核酸探针或引物。
7.如权利要求5所述的应用,其特征在于:所述定量基因标签表达量由LASSO逻辑回归模型构建用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式计算得到。
8.如权利要求7所述的应用,用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值 = ADAMDEC1表达量×(0.0032~0.0033) + CCL18表达量×(0.0457~0.0458)+CD79A表达量×(8.6115~8.6116)+ CD96表达量×(6.2220~6.2221)+ CXCL13表达量×(-0.5851~ -0.5852) + DIRAS3表达量×(-6.0819~ -6.0820) + ERBB4表达量×(1.7290~1.7291)+ EVL表达量×(-1.7036~ -1.7037) + GAMT表达量×(-8.8489~ -8.8490) +GBP1表达量×(-0.7646~ -0.7647) + GFRA1表达量×(-0.1159~ -0.1160) + GZMB表达量×(-0.0752~ -0.0753) + HSPB8表达量×(-1.2886~ -1.2887) + IGHM表达量×(-1.3731~ -1.3732) + IRS1表达量×(0.2500 ~0.2501)+ ITK表达量×(-2.3029~ -2.3030) +LOC102723479表达量×(0.3854~0.3855)+ MAPT表达量×(0.2861 ~0.2862)+ PADI2表达量×(0.7831~0.7832)+ RLN2表达量×(-1.5620~ -1.5621) + SEL1L3表达量×(-2.9842~-2.9843) + SERPINA5表达量×(0.2565 ~0.2566)+ STC2表达量×(0.4303-0.4304)+STK32B表达量×(-1.2839~ -1.2840) + SYBU表达量×(-0.7062~ -0.7063)。
9.如权利要求8所述的应用,用于预测乳腺癌紫杉醇和蒽环新辅助化疗敏感性的评分公式为:分值 = ADAMDEC1表达量×0.00321747620626765 + CCL18表达量×0.0457079749167309 + CD79A表达量×8.61152358256599 + CD96表达量×6.22205851428899 + CXCL13表达量×(-0.585126092824241) + DIRAS3表达量×(-6.08198493202845) + ERBB4表达量×1.72908010036751 + EVL表达量×(-1.70368931131805) + GAMT表达量×(-8.84896004120253) + GBP1表达量×(-0.764626193845283) + GFRA1表达量×(-0.115908259316488) + GZMB表达量×(-0.0752619689246736) + HSPB8表达量×(-1.28866942797256) + IGHM表达量×(-1.37319937849059) + IRS1表达量×0.250096649476748 + ITK表达量×(-2.30297033083433) + LOC102723479表达量×0.385454564188641 + MAPT表达量×0.286187494306212 + PADI2表达量×0.783128470665541 + RLN2表达量×(-1.56204367828805) + SEL1L3表达量×(-2.98426861278556) + SERPINA5表达量×0.25651424658033 + STC2表达量×0.430345120497431 + STK32B表达量×(-1.28399430856461) + SYBU表达量×(-0.706271090221699)。
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110320031.5A CN113061655B (zh) | 2021-03-25 | 2021-03-25 | 一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110320031.5A CN113061655B (zh) | 2021-03-25 | 2021-03-25 | 一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 |
Publications (2)
Publication Number | Publication Date |
---|---|
CN113061655A CN113061655A (zh) | 2021-07-02 |
CN113061655B true CN113061655B (zh) | 2022-04-19 |
Family
ID=76561902
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202110320031.5A Active CN113061655B (zh) | 2021-03-25 | 2021-03-25 | 一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN113061655B (zh) |
Families Citing this family (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN114664413B (zh) * | 2022-04-06 | 2022-12-20 | 中国医学科学院肿瘤医院 | 在治疗前对直肠癌治疗抵抗及其分子机制的预测系统 |
CN116377061B (zh) * | 2022-11-28 | 2024-01-16 | 中山大学孙逸仙纪念医院 | 乳腺癌新辅助化疗耐药标志物及其应用 |
CN117165682B (zh) * | 2023-08-04 | 2024-06-11 | 广东省人民医院 | 用于乳腺癌新辅助化疗获益和/或预后评估的标志物组合及其应用 |
Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010003772A1 (en) * | 2008-06-16 | 2010-01-14 | Siemens Medical Solutions Diagnostics Gmbh | Method for predicting adverse response to erythropoietin in breast cancer treatment |
CN105986024A (zh) * | 2015-02-27 | 2016-10-05 | 复旦大学附属肿瘤医院 | 一组用于三阴性乳腺癌预后的基因及其应用 |
CN107254546A (zh) * | 2017-08-16 | 2017-10-17 | 复旦大学附属华山医院 | 一种与乳腺癌新辅助化疗疗效相关的snp标志物及其应用 |
CN107488738A (zh) * | 2017-10-12 | 2017-12-19 | 中国医学科学院肿瘤医院 | 一种预测乳腺癌对曲妥珠单抗联合化疗治疗敏感性的生物标志物 |
CN110923318A (zh) * | 2019-12-10 | 2020-03-27 | 中国医学科学院肿瘤医院 | 用于在乳腺癌患者中预测新辅助化疗疗效的标志物及其应用 |
Family Cites Families (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
PL2737081T3 (pl) * | 2011-07-28 | 2017-04-28 | Sividon Diagnostics Gmbh | Sposób przewidywania odpowiedzi na chemioterapię u pacjenta cierpiącego na lub u którego występuje ryzyko wystąpienia nawrotu raka sutka |
-
2021
- 2021-03-25 CN CN202110320031.5A patent/CN113061655B/zh active Active
Patent Citations (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010003772A1 (en) * | 2008-06-16 | 2010-01-14 | Siemens Medical Solutions Diagnostics Gmbh | Method for predicting adverse response to erythropoietin in breast cancer treatment |
CN105986024A (zh) * | 2015-02-27 | 2016-10-05 | 复旦大学附属肿瘤医院 | 一组用于三阴性乳腺癌预后的基因及其应用 |
CN107254546A (zh) * | 2017-08-16 | 2017-10-17 | 复旦大学附属华山医院 | 一种与乳腺癌新辅助化疗疗效相关的snp标志物及其应用 |
CN107488738A (zh) * | 2017-10-12 | 2017-12-19 | 中国医学科学院肿瘤医院 | 一种预测乳腺癌对曲妥珠单抗联合化疗治疗敏感性的生物标志物 |
CN110923318A (zh) * | 2019-12-10 | 2020-03-27 | 中国医学科学院肿瘤医院 | 用于在乳腺癌患者中预测新辅助化疗疗效的标志物及其应用 |
Non-Patent Citations (2)
Title |
---|
Gene Expression Profiles Predict Complete Pathologic Response to Neoadjuvant Paclitaxel and Fluorouracil, Doxorubicin, and Cyclophosphamide Chemotherapy in Breast Cancer;M. Ayers et al.;《Journal of Clinical Oncology》;20040615;第22卷(第12期);第2284-2293页 * |
间变性淋巴瘤激酶通路标签与乳腺癌细胞去分化、新辅助化疗反应及复发风险的相关性;刘定燮 等;《癌症》;20200821;第39卷(第11期);第496-508页 * |
Also Published As
Publication number | Publication date |
---|---|
CN113061655A (zh) | 2021-07-02 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN113061655B (zh) | 一组用于预测乳腺癌新辅助化疗敏感性的基因标签及应用 | |
US20210256323A1 (en) | Methods and compositions for aiding in distinguishing between benign and maligannt radiographically apparent pulmonary nodules | |
CN103733065B (zh) | 用于癌症的分子诊断试验 | |
CN111128299B (zh) | 一种结直肠癌预后显著相关ceRNA调控网络的构建方法 | |
CN107881234B (zh) | 一组肺腺癌相关基因标签及其应用 | |
CN102439168A (zh) | 用以对头颈癌进行识别、监测、以及治疗的生物标记物 | |
CN105986034A (zh) | 一组胃癌基因的应用 | |
CN111933211B (zh) | 癌症精准化疗分型标志物筛选方法、化疗敏感性的分子分型方法和应用 | |
CN114203256B (zh) | 基于微生物丰度的mibc分型及预后预测模型构建方法 | |
Luo et al. | hsa‐mir‐3199‐2 and hsa‐mir‐1293 as novel prognostic biomarkers of papillary renal cell carcinoma by COX ratio risk regression model screening | |
Xiao et al. | Identification of a novel immune-related prognostic biomarker and small-molecule drugs in clear cell renal cell carcinoma (ccRCC) by a merged microarray-acquired dataset and TCGA database | |
Wang et al. | Identification of a tumor microenvironment-related seven-gene signature for predicting prognosis in bladder cancer | |
CN113430267B (zh) | 一种化疗相关基因表达特征在预测胰腺癌预后中的应用 | |
Zhu et al. | Effects of immune inflammation in head and neck squamous cell carcinoma: Tumor microenvironment, drug resistance, and clinical outcomes | |
CN113345592B (zh) | 一种急性髓细胞样白血病预后风险模型的构建及诊断设备 | |
Lian et al. | DNA methylation data-based molecular subtype classification and prediction in patients with gastric cancer | |
CN109735619B (zh) | 与非小细胞肺癌预后相关的分子标志物及其应用 | |
CN113151460A (zh) | 一种识别肺腺癌肿瘤细胞的基因标志物及其应用 | |
Xu et al. | Development of a lncRNA‐based prognostic signature for oral squamous cell carcinoma | |
Yu et al. | Essential gene expression pattern of head and neck squamous cell carcinoma revealed by tumor-specific expression rule based on single-cell RNA sequencing | |
Wang et al. | Ferroptosis-related genes prognostic signature for pancreatic cancer and immune infiltration: potential biomarkers for predicting overall survival | |
Tawk et al. | Tumor DNA‐methylome derived epigenetic fingerprint identifies HPV‐negative head and neck patients at risk for locoregional recurrence after postoperative radiochemotherapy | |
Wan et al. | Potential clinical impact of metagenomic next-generation sequencing of plasma for cervical spine injury with sepsis in intensive care unit: a retrospective study | |
Li et al. | The machine-learning-mediated interface of microbiome and genetic risk stratification in neuroblastoma reveals molecular pathways related to patient survival. Cancers. 2022; 14 | |
Yao et al. | A Framework to Predict the Applicability of Gene Signatures for Improving Prognostic Prediction |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |