CN112763417B - Digital pathological section panoramic scanning system - Google Patents
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Abstract
Description
技术领域technical field
本发明属于医疗器械领域,涉及一种数字病理切片全景扫描系统。The invention belongs to the field of medical devices, and relates to a panoramic scanning system for digital pathological slices.
背景技术Background technique
病理切片微观尺度检查是疾病诊断的金标准之一。Microscopic examination of pathological sections is one of the gold standards for disease diagnosis.
传统的商用病理切片全景扫描依赖于基于显微物镜的显微镜集成高精度的电动三维位移平台和成像CCD或CMOS。成像器件一次只能采集病理切片的一个局部区域,通过X、Y轴扫描实现全景成像。高倍物镜存在景深浅的问题,而病理切片的放置可能存在倾斜,导致整个平面只有一部分处于高倍物镜的焦平面上,需要在扫描过程中加上Z轴的电动聚焦来获得清晰聚焦的图像。Traditional panoramic scanning of commercial pathological sections relies on microscope objective-based microscopes integrating a high-precision motorized three-dimensional displacement stage and imaging CCD or CMOS. The imaging device can only collect a local area of the pathological slice at a time, and realize panoramic imaging through X and Y axis scanning. The high magnification objective has the problem of shallow depth of field, and the placement of pathological slices may be inclined, resulting in only a part of the entire plane on the focal plane of the high magnification objective. It is necessary to add Z-axis motorized focusing during the scanning process to obtain a clearly focused image.
现有商用数字病理全景技术采用光学显微物镜,对病理切片极小区域成像,采用快速的X、Y、Z三个方向扫描的方式完成整块病理切片的取图。以40X物镜为例,完成一片15mm*15mm大小病理切片需要拍摄数千张图片,耗时约30s。整套设备在硬件上需要高精密、高稳定、高速运转且耐用的三维电动位移平台和像差校正极佳的昂贵高倍显微物镜;在软件上,需要能够将数百至数千张局部图片拼接成一张完整的全景病理切片图片,处理速度必须快,相应的对计算机的处理硬件也有很高的性能要求。以上原因,决定了现有的商用数字病理全景扫描设备一定是昂贵的,有相当技术难度的设备。The existing commercial digital pathology panorama technology uses an optical microscope objective lens to image a very small area of a pathological slice, and uses a fast X, Y, and Z three-direction scanning method to complete the image acquisition of the entire pathological slice. Taking the 40X objective lens as an example, it takes thousands of pictures to complete a 15mm*15mm pathological slice, which takes about 30s. The whole set of equipment requires a high-precision, high-stability, high-speed and durable three-dimensional motorized displacement platform and an expensive high-power microscope objective lens with excellent aberration correction in hardware; in software, it needs to be able to stitch hundreds to thousands of partial pictures To form a complete panoramic pathological slice picture, the processing speed must be fast, and the corresponding processing hardware of the computer also has high performance requirements. The above reasons determine that the existing commercial digital pathology panoramic scanning equipment must be expensive and technically difficult equipment.
发明内容SUMMARY OF THE INVENTION
本发明提出一种数字病理切片全景扫描系统,其选取大画幅的成像器件,完成对病理切片全景的一次拍摄即获取整张病理切片全图,省却高要求的昂贵机械扫描模块和高性能的成像物镜。The present invention proposes a digital pathological slice panoramic scanning system, which selects a large-format imaging device, completes a single shot of the panorama of the pathological slice, and obtains a full image of the entire pathological slice, eliminating the need for expensive mechanical scanning modules with high requirements and high-performance imaging. objective lens.
本发明解决上述问题的技术方案是:一种数字病理切片全景扫描系统,其特殊之处在于,包括:The technical solution of the present invention to solve the above problem is: a digital pathological slice panoramic scanning system, which is special in that it includes:
宽谱光源、可调谐滤光器、光电滑环、分光装置、光纤组、计算机、载物平面和图像传感器;宽谱光源输出准直光束进入可调谐滤光器,可调谐滤光器接受计算机发送的波长扫描指令,将宽谱光源的输出光转为按顺序重复输出的单色光;光电滑环与分光装置联动,接收计算机的指令将光电滑环出射的单色光按顺序耦合进光纤组;光纤组对载物平面上的物体进行多角度照明;图像传感器接收计算机的指令实现触发拍照,采集载物平面上物体经单色光顺序照明的图像;计算机对采集到的图像进行重建,实现病理切片全景成像。Broad-spectrum light source, tunable optical filter, photoelectric slip ring, spectroscopic device, optical fiber group, computer, object plane and image sensor; the output collimated beam of the broad-spectrum light source enters the tunable optical filter, and the tunable optical filter accepts the computer The wavelength scanning command sent will convert the output light of the broad-spectrum light source into monochromatic light that is repeatedly output in sequence; the photoelectric slip ring is linked with the spectroscopic device, and receives the computer's command to couple the monochromatic light emitted by the photoelectric slip ring into the optical fiber in sequence. The optical fiber group illuminates the objects on the object plane from multiple angles; the image sensor receives the instructions of the computer to trigger the photography, and collects the images of the objects on the object plane illuminated by the monochromatic light sequence; the computer reconstructs the collected images, Realize panorama imaging of pathological slices.
进一步地,上述宽谱光源输出至少包含400-700nm整个波段的准直光束。Further, the output of the broad-spectrum light source at least includes a collimated light beam in the entire wavelength range of 400-700 nm.
进一步地,上述宽谱光源可以是白激光、氙灯、卤素灯等涵盖400-700nm波段的宽谱光源。Further, the above-mentioned broad-spectrum light source may be a broad-spectrum light source covering a wavelength band of 400-700 nm, such as a white laser, a xenon lamp, a halogen lamp, or the like.
进一步地,上述可调谐滤光器与光电滑环之间通过第一光纤连接,光电滑环与分光装置之间通过第二光纤连接。可调谐滤波器出光耦合进第一光纤,第一光纤与第二光纤在光电滑环中完成耦合,第二光纤随转盘转动,光电滑环能让静止的第一光纤与旋转的第二光纤之间保持光的传输。为了防止第二光纤在旋转过程中不断,需要同步光电滑环与转盘,使其以相同的角速度运行。Further, the tunable optical filter and the optoelectronic slip ring are connected through a first optical fiber, and the optoelectronic slip ring and the optical splitting device are connected through a second optical fiber. The output light of the tunable filter is coupled into the first optical fiber, the first optical fiber and the second optical fiber are coupled in the photoelectric slip ring, the second optical fiber rotates with the turntable, and the photoelectric slip ring can make the stationary first optical fiber and the rotating second optical fiber. maintain light transmission. In order to prevent the second optical fiber from continuing to rotate during the rotation, it is necessary to synchronize the photoelectric slip ring and the turntable to make it run at the same angular velocity.
进一步地,上述分光装置为电动转盘。Further, the above-mentioned spectroscopic device is an electric turntable.
进一步地,上述电动转盘上有一个开口,用于放置第二光纤的接头以及光纤准直聚焦耦合模块。准直聚焦耦合模块安置在转盘的开口上,将第二光纤的出光准直后随着电动转盘的旋转依序聚焦耦合入光线组中的不同光纤。即,接收计算机的指令将光电滑环出射的单色光按顺序耦合进光纤组。Further, the motorized turntable has an opening for placing the connector of the second optical fiber and the optical fiber collimation focusing coupling module. The collimation focusing coupling module is arranged on the opening of the turntable, and after collimating the light emitted from the second optical fiber, it sequentially focuses and couples into different optical fibers in the light group along with the rotation of the electric turntable. That is, the monochromatic light emitted from the photoelectric slip ring is sequentially coupled into the optical fiber group by receiving the instruction of the computer.
进一步地,上述光纤组包含至少五根光纤,光纤组在一个截面上以与垂直方向夹角从-40°到40°均匀排布,实现对载物平面上的物体进行多角度照明的目的。Further, the above-mentioned optical fiber group includes at least five optical fibers, and the optical fiber group is uniformly arranged at an angle from -40° to 40° with the vertical direction on a cross section, so as to realize the multi-angle illumination of the object on the object carrier plane.
进一步地,上述载物平面与图像传感器之间相距0.1mm到1mm。Further, the distance between the above-mentioned object plane and the image sensor is 0.1 mm to 1 mm.
进一步地,上述图像传感器采用大于15mm*15mm画幅的图像传感器。Further, the above-mentioned image sensor adopts an image sensor with a size larger than 15mm*15mm.
本发明的优点:Advantages of the present invention:
1)本发明采用无透镜成像方式,获得单位放大率的成像视野,通过选择大画幅的图像传感器,实现一次拍照实现全景病理成像的目的;1) The present invention adopts a lensless imaging method to obtain an imaging field of view of unit magnification, and by selecting a large-format image sensor, the purpose of taking a photo to achieve panoramic pathological imaging is achieved;
2)由于可以一次拍照实现病理切片全景取图,所以不需要精密的位移平台,降低了成本;2) Since the panorama of the pathological slice can be obtained by taking a photo at one time, a precise displacement platform is not required, which reduces the cost;
3)本发明采用数字聚焦,无需物理上的电动聚焦或手动对焦操作;3) The present invention adopts digital focusing and does not require physical electric focusing or manual focusing operations;
4)本发明无需图像拼接,降低成像难度;4) The present invention does not need image splicing, which reduces the difficulty of imaging;
5)本发明将拍摄时间从30s缩减至不足2s,耗时短,大大提高了效率;5) The present invention reduces the shooting time from 30s to less than 2s, takes less time, and greatly improves the efficiency;
6)本发明系统简单,缩减了硬件成本。6) The system of the present invention is simple, and the hardware cost is reduced.
附图说明Description of drawings
图1为本发明数字病理切片全景扫描系统的示意图。FIG. 1 is a schematic diagram of a panoramic scanning system for digital pathological slices of the present invention.
其中:1、宽谱光源,2、可调谐滤光器,3、光电滑环,4、分光装置,5、光纤组,6、计算机,7、载物平面,8、图像传感器,9、第一光纤,10第二光纤。Among them: 1. Broad-spectrum light source, 2. Tunable filter, 3. Photoelectric slip ring, 4. Spectroscopic device, 5. Optical fiber group, 6. Computer, 7. Object plane, 8. Image sensor, 9. Section One fiber, 10 second fibers.
具体实施方式Detailed ways
为使本发明实施方式的目的、技术方案和优点更加清楚,下面将结合本发明实施方式中的附图,对本发明实施方式中的技术方案进行清楚、完整地描述,显然,所描述的实施方式是本发明一部分实施方式,而不是全部的实施方式。基于本发明中的实施方式,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施方式,都属于本发明保护的范围。因此,以下对在附图中提供的本发明的实施方式的详细描述并非旨在限制要求保护的本发明的范围,而是仅仅表示本发明的选定实施方式。In order to make the purposes, technical solutions and advantages of the embodiments of the present invention clearer, the technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to the accompanying drawings in the embodiments of the present invention. Obviously, the described embodiments These are some embodiments of the present invention, but not all of them. Based on the embodiments of the present invention, all other embodiments obtained by persons of ordinary skill in the art without creative efforts shall fall within the protection scope of the present invention. Accordingly, the following detailed description of the embodiments of the invention provided in the accompanying drawings is not intended to limit the scope of the invention as claimed, but is merely representative of selected embodiments of the invention.
现有的病理切片全景扫描设备采用高倍物镜成像在线阵相机或者面阵相机上,通过精密的位移平台进行自动聚焦,平面扫描,病理切片的清晰全景成像。The existing pathological slice panoramic scanning equipment adopts a high-magnification objective lens to image on a line scan camera or an area scan camera, and uses a precise displacement platform to perform automatic focusing, plane scanning, and clear panoramic imaging of the pathological slice.
现有技术的缺点为:成像视野小;对位移平台要求高;需要电动对焦;需要图像拼接;耗时长;系统复杂。The disadvantages of the prior art are: the imaging field of view is small; the requirements for the displacement platform are high; the electric focus is required; the image stitching is required; the time-consuming is long;
为解决现有技术中存在的问题,参见图1,本发明提出一种数字病理切片全景扫描系统,包括宽谱光源1、可调谐滤光器2、光电滑环3、分光装置4、光纤组5、计算机6、载物平面7和图像传感器8。In order to solve the problems existing in the prior art, referring to FIG. 1 , the present invention proposes a panoramic scanning system for digital pathological slices, including a broad-spectrum light source 1, a tunable
宽谱光源1输出准直光束进入可调谐滤光器2,可调谐滤光器2接受计算机6发送的波长扫描指令,将宽谱光源1的输出光转为按顺序重复输出的单色光;光电滑环3与光装置4联动,接收计算机6的指令将光电滑环3出射的单色光按顺序耦合进光纤组5;光纤组5对载物平面7上的物体进行多角度照明;图像传感器8接收计算机6的指令实现触发拍照,采集载物平面7上物体经单色光顺序照明的图像;计算机6对采集到的图像进行重建,实现病理切片全景成像。The wide-spectrum light source 1 outputs a collimated beam and enters the
作为本发明的一个优选实施例,上述宽谱光源1输出至少包含400-700nm整个波段的准直光束。As a preferred embodiment of the present invention, the above-mentioned broad-spectrum light source 1 outputs a collimated light beam at least including the entire wavelength band of 400-700 nm.
优选地,上述宽谱光源可以是白激光、氙灯、卤素灯等涵盖400-700nm波段的宽谱光源。Preferably, the above-mentioned broad-spectrum light source may be a broad-spectrum light source covering a wavelength band of 400-700 nm, such as a white laser, a xenon lamp, a halogen lamp, or the like.
作为本发明的一个优选实施例,上述可调滤光器2与光电滑环3之间通过第一光纤9连接,光电滑环3与分光装置4之间通过第二光纤10连接。可调谐滤波器2出光耦合进第一光纤9,第一光纤9与第二光纤10在光电滑环3中完成耦合,第二光纤10随转盘转动,光电滑环3能让静止的第一光纤9与旋转的第二光纤10之间保持光的传输。为了防止第二光纤10在旋转过程中不断,需要同步光电滑环与转盘,使其以相同的角速度运行。As a preferred embodiment of the present invention, the
分光装置4由开口的电动转盘和准直聚焦耦合模块组成。准直聚焦耦合模块安置在转盘的开口上,将第二光纤10的出光准直后随着电动转盘的旋转依序聚焦耦合入光线组5中的不同光纤。即,接收计算机的指令将光电滑环3出射的单色光按顺序耦合进光纤组5。The
作为本发明的一个优选实施例,上述分光装置4也可以采用分光模块。As a preferred embodiment of the present invention, the above-mentioned light-splitting
进一步地,上述光纤组5包含至少五根光纤,光纤组5在一个截面上以与垂直方向夹角从-40°到40°均匀排布,实现对载物平面7上的物体进行多角度照明的目的。Further, the above-mentioned
进一步地,上述载物平面7与图像传感器8之间相距0.1mm到1mm。Further, the distance between the
进一步地,上述图像传感器8采用大于15mm*15mm画幅的图像传感器。Further, the above-mentioned
数字全息具有将视场角与分辨率解耦合的特性,更进一步,单位放大率的同轴数字全息,具有成像器件有效区域有多大,可成像物体面积就有多大的优势。因此,选取大画幅的成像器件,完成对病理切片全景的一次拍摄即获取整张病理切片全图,省却了高要求的昂贵机械扫描模块和高性能的成像物镜。结合快速多波长扫描技术,及改变照明方式实现可媲美40X物镜分辨率的彩色病理全景切片图。Digital holography has the characteristics of decoupling the field of view and resolution. Further, coaxial digital holography with unit magnification has the advantage of how large the effective area of the imaging device is and how large the area of the imageable object is. Therefore, a large-format imaging device is selected to obtain a full image of the entire pathological slice by taking a panorama of the pathological slice in one shot, eliminating the need for expensive mechanical scanning modules and high-performance imaging objective lenses. Combined with the fast multi-wavelength scanning technology and changing the illumination method, the color pathological panorama slice image with the resolution comparable to 40X objective lens can be realized.
具体的,本发明可以实现全景病理切片高速、超分辨数字全息成像:Specifically, the present invention can realize high-speed, super-resolution digital holographic imaging of panoramic pathological slices:
(1)超分辨通过在454nm-466nm,524nm-536nm,624nm-636nm三个区间,中心波长以3nm为间隔,带宽<2nm,进行波长扫描,每个区间的波长扫描用于亚像素超分辨图像重建。三个区域用于彩色全息图像重建,扫描波长共15个。亚像素超分辨可以缓解因为大像元尺寸引起的采样不足,合成具有更小尺寸像元尺寸的重建图像,从而提升图像分辨率。但是由于图像像素接收角小引起的物体高频空间频率丢失需要通过多角度照明合成孔径超分辨成像来缓解。本项目拟用-40°到40°,以10°为间隔,选取9个角度进行多角度扫描照明完成合成孔径超分辨成像。(1) Super-resolution is performed in three intervals of 454nm-466nm, 524nm-536nm, and 624nm-636nm, the center wavelength is at 3nm intervals, and the bandwidth is <2nm, and wavelength scanning is performed. The wavelength scanning of each interval is used for sub-pixel super-resolution images. reconstruction. Three regions are used for color holographic image reconstruction, with a total of 15 scanning wavelengths. Sub-pixel super-resolution can alleviate the undersampling caused by large pixel size and synthesize reconstructed images with smaller pixel size, thereby improving image resolution. However, the loss of high-frequency spatial frequency of objects caused by the small receiving angle of image pixels needs to be alleviated by multi-angle illumination synthetic aperture super-resolution imaging. This project plans to use -40° to 40°, at 10° intervals, select 9 angles for multi-angle scanning illumination to complete synthetic aperture super-resolution imaging.
(2)全景高速采用超高速大画幅相机,有效成像区域为22mm*22mm,可以完全涵盖15mm*15mm大小的标准病理切片,所拟用相机帧率可高达71帧。从第(1)点可知,获得一张全景高分辨率病理图像,需要拍照共9*15=135张,结合相机帧率,最终总共耗时135/71=1.9s。即不用2s就可以完成一张与40X,NA1.0物镜所获取图像同样分辨率的全景病理切片图像,耗时缩短了30s/2s=15倍。(2) The panoramic high-speed adopts an ultra-high-speed large-format camera, and the effective imaging area is 22mm*22mm, which can completely cover standard pathological slices of 15mm*15mm size, and the frame rate of the proposed camera can be as high as 71 frames. It can be seen from point (1) that to obtain a panoramic high-resolution pathological image, a total of 9*15=135 photos need to be taken. Combined with the camera frame rate, the total time taken is 135/71=1.9s. That is, a panoramic pathological slice image with the same resolution as the image obtained by the 40X, NA1.0 objective lens can be completed without 2s, and the time-consuming is shortened by 30s/2s=15 times.
本发明相比商业技术,将拍摄时间从30s缩减至不足2s,大大提高了效率。将昂贵的精密位移平台和高品质显微物镜替换成同一位置多次拍摄,缩减了硬件成本和成像难度。Compared with the commercial technology, the present invention reduces the shooting time from 30s to less than 2s, and greatly improves the efficiency. Replacing expensive precision displacement stages and high-quality microscope objectives with multiple shots at the same location reduces hardware costs and imaging difficulty.
以上所述仅为本发明的实施例,并非以此限制本发明的保护范围,凡是利用本发明说明书及附图内容所作的等效结构或等效流程变换,或直接或间接运用在其他相关的系统领域,均同理包括在本发明的保护范围内。The above descriptions are only the embodiments of the present invention, and are not intended to limit the protection scope of the present invention. Any equivalent structure or equivalent process transformation made by using the contents of the description and drawings of the present invention, or directly or indirectly applied to other related The system field is similarly included in the protection scope of the present invention.
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