CN111848773B - Molecular marker RANBP1 related to human colorectal cancer and application thereof - Google Patents

Molecular marker RANBP1 related to human colorectal cancer and application thereof Download PDF

Info

Publication number
CN111848773B
CN111848773B CN202010939514.9A CN202010939514A CN111848773B CN 111848773 B CN111848773 B CN 111848773B CN 202010939514 A CN202010939514 A CN 202010939514A CN 111848773 B CN111848773 B CN 111848773B
Authority
CN
China
Prior art keywords
ranbp1
colorectal cancer
molecular marker
cells
antibody
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN202010939514.9A
Other languages
Chinese (zh)
Other versions
CN111848773A (en
Inventor
袁小琴
左思雨
郑旦旦
沈铭
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Nanjing Medical University
Original Assignee
Nanjing Medical University
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Nanjing Medical University filed Critical Nanjing Medical University
Priority to CN202010939514.9A priority Critical patent/CN111848773B/en
Publication of CN111848773A publication Critical patent/CN111848773A/en
Application granted granted Critical
Publication of CN111848773B publication Critical patent/CN111848773B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/46Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates
    • C07K14/47Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals
    • C07K14/4701Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans from vertebrates from mammals not used
    • C07K14/4702Regulators; Modulating activity
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C12Q1/6886Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material for cancer
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57407Specifically defined cancers
    • G01N33/57419Specifically defined cancers of colon
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/574Immunoassay; Biospecific binding assay; Materials therefor for cancer
    • G01N33/57484Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumor, cancer, neoplasia, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides, metabolites
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/118Prognosis of disease development
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2333/00Assays involving biological materials from specific organisms or of a specific nature
    • G01N2333/435Assays involving biological materials from specific organisms or of a specific nature from animals; from humans
    • G01N2333/46Assays involving biological materials from specific organisms or of a specific nature from animals; from humans from vertebrates
    • G01N2333/47Assays involving proteins of known structure or function as defined in the subgroups
    • G01N2333/4701Details
    • G01N2333/4703Regulators; Modulating activity

Landscapes

  • Health & Medical Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Organic Chemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Biomedical Technology (AREA)
  • Pathology (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Urology & Nephrology (AREA)
  • Hematology (AREA)
  • Hospice & Palliative Care (AREA)
  • Genetics & Genomics (AREA)
  • Zoology (AREA)
  • Oncology (AREA)
  • Biotechnology (AREA)
  • Cell Biology (AREA)
  • Medicinal Chemistry (AREA)
  • Microbiology (AREA)
  • Physics & Mathematics (AREA)
  • Food Science & Technology (AREA)
  • Biophysics (AREA)
  • General Physics & Mathematics (AREA)
  • Wood Science & Technology (AREA)
  • Gastroenterology & Hepatology (AREA)
  • Toxicology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The invention belongs to the technical field of tumor biological diagnosis, and particularly discloses a molecular marker RAN Binding Protein 1(RANBP1) related to human colorectal cancer and application thereof. The amino acid sequence of the molecular marker RANBP1 is shown in SEQ NO.1, and primers for amplifying the molecular marker RANBP1 are RANBP1-F and RANBP1-R (specific sequences are shown later). The research shows that the expression level of RANBP1 is increased to be used as a biomarker for diagnosing the occurrence and prognosis of colorectal cancer, and the antibody can be used for the application of a colorectal cancer diagnosis kit.

Description

Molecular marker RANBP1 related to human colorectal cancer and application thereof
Technical Field
The invention belongs to the technical field of tumor biological diagnosis, and relates to a molecular marker RANBP1 related to human colorectal cancer and application thereof.
Background
Colorectal cancer (CRC) is one of the most serious malignant tumors with high incidence and mortality worldwide. According to statistics, the death number of colorectal tumor patients accounts for more than 9 percent of the total death number caused by tumors in the whole world. In recent years, the incidence rate of colorectal cancer is gradually increased in China, and data statistics in 2015 show that the incidence rate of colorectal cancer in men is as high as 10.13 percent and is located in the fourth place of common malignant tumors, while the incidence rate of colorectal cancer in women is 9.25 percent after that of breast cancer and lung cancer. Meanwhile, the colorectal cancer has long latent period and no symptoms appear in the latent period, so that the early screening and diagnosis of the colorectal cancer have important significance and are important for treatment and survival of patients.
At present, CRC screening process mainly comprises Fecal Occult Blood Test (FOBT), Fecal Immunochemical Test (FIT), soft sigmoidoscope and other modes, and the methods are proved to be capable of effectively reducing colorectal cancer death rate. Although the detection is convenient and quick, has no harm to patients and has high patient compliance, the defects of poor positioning and poor specificity exist, so that the aim of developing a new molecular marker is to improve the early screening rate of colorectal cancer patients, and further improve the survival rate of colorectal cancer patients.
Disclosure of Invention
Aiming at the defects of the prior art, the invention provides a molecular marker RAN Binding Protein 1(RANBP1) related to human colorectal cancer and application thereof, and researches prove that the expression of the RANBP1 Protein in human colorectal cancer tissues is obviously higher than that of normal colorectal tissues and is related to poor prognosis. Specifically, the increased expression level of RANBP1 can be used as a biomarker for diagnosing the occurrence and prognosis of colorectal cancer, and the antibody thereof can be used for a colorectal cancer diagnosis kit.
A molecular marker RANBP1 related to human colorectal cancer, wherein the amino acid sequence of the molecular marker RANBP1 is shown as SEQ NO. 1.
SEQ NO.1:
MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKAGSGKNDHAEKVAEKLEALSVKEETKEDAEEKQ
A nucleic acid molecule, the nucleotide sequence (cDNA sequence) of the coding molecular marker RANBP1 is shown in SEQ NO. 2.
SEQ NO.2:
GCCGGCGCCAGACGCGGAGGGAAGGAGCTACGAGTAGCCGCCGAGAGGCCGCGGAGCCAGCGACGACCGACCCAGCCGAGCCGCCGCCGCCGCCGCGCCCCCATGGCGGCCGCCAAGGACACTCATGAGGACCATGATACTTCCACTGAGAATACAGACGAGTCCAACCATGACCCTCAGTTTGAGCCAATAGTTTCTCTTCCTGAGCAAGAAATTAAAACACTGGAAGAAGATGAAGAGGAACTTTTTAAAATGCGGGCAAAACTGTTCCGATTTGCCTCTGAGAACGATCTCCCAGAATGGAAGGAGCGAGGCACTGGTGACGTCAAGCTCCTGAAGCACAAGGAGAAAGGGGCCATCCGCCTCCTCATGCGGAGGGACAAGACCCTGAAGATCTGTGCCAACCACTACATCACGCCGATGATGGAGCTGAAGCCCAACGCAGGTAGCGACCGTGCCTGGGTCTGGAACACCCACGCTGACTTCGCCGACGAGTGCCCCAAGCCAGAGCTGCTGGCCATCCGCTTCCTGAATGCTGAGAATGCACAGAAATTCAAAACAAAGTTTGAAGAATGCAGGAAAGAGATCGAAGAGAGAGAAAAGAAAGCAGGATCAGGCAAAAATGATCATGCCGAAAAAGTGGCGGAAAAGCTAGAAGCTCTCTCGGTGAAGGAGGAGACCAAGGAGGATGCTGAGGAGAAGCAATAAATCGTCTTATTTTATTTTCTTTTCCTCTCTTTCCTTTCCTTTTTTTAAAAAATTTTACCCTGCCCCTCTTTTTCGGTTTGTTTTTATTCTTTCATTTTTACAAGGGACGTTATATAAAGAACTGAACTC
An amplification primer for detecting a molecular marker RANBP1 related to human colorectal cancer, wherein the primer for amplifying the marker RANBP1 of claim 1 is:
RANBP1-F:5’-GCCATCCGCTTCCTGAATG-3’
RANBP1-R:5’-TCTCTCTTCGATCTCTTTCCTGC-3’
the application of the molecular marker RANBP1 related to human colorectal cancer in preparing products related to colorectal cancer diagnosis, prognosis evaluation, or treatment and adjuvant therapy.
As an improvement, the related product is a detection reagent.
In the improvement, the detection reagent contains a molecular marker RANBP1 as described in claim 1.
In a modification, the detection reagent contains an antibody, the antibody specifically binds to the molecular marker RANBP1, and the detection method is an immunohistochemistry method.
In a further improvement, the antibody is a monoclonal antibody or a polyclonal antibody.
As a refinement, the assay actually comprises the amplification primers described above.
In a further improvement, the detection method used by the detection reagent is qRT-PCR method.
A detection kit comprises the detection reagent, and the detection reagent contains an antibody or an amplification primer.
Has the advantages that:
compared with the prior art, the invention discloses a molecular marker RANBP1 related to human colorectal cancer and a molecular marker RANBP1 related to human colorectal cancer
The application has the following advantages:
the expression of the molecular marker in colorectal cancer tumor tissues is obviously higher than that of corresponding normal tissues, the expression level of the molecular marker is positively correlated with the clinical stage of the tumor, and is negatively correlated with prognosis and survival rate, so that the molecular marker can be used as an early screening and prognosis evaluation index of colorectal cancer.
Drawings
FIG. 1 shows the expression of RANBP1 gene in TCGA database in 471 clinical colorectal cancer tissues and 41 normal colorectal tissues;
FIG. 2 shows the expression of RANBP1 in TCGA database 41 versus clinical colorectal cancer tissue and its corresponding normal tissue;
FIG. 3 is a graph of clinical patient survival curves for different amounts of RANBP1 expression in the TCGA database;
FIG. 4 shows the detection of RANBP1 expression in Tumor tissue (Tumor) and its corresponding normal tissue of clinical colorectal cancer patients by immunohistochemical assay;
FIG. 5 shows the immunohistochemical statistics of tumor samples RANBP1 of clinical colorectal cancer patients;
FIG. 6 shows the expression of RANBP1 in tumor tissues of colorectal cancer patients at different clinical stages;
FIG. 7 is a survival curve of colorectal cancer patients with different amounts of RANBP1 expression in clinical samples;
FIG. 8 shows the expression of RANBP1 in normal colorectal epithelial cells and colorectal tumor cells;
FIG. 9 shows the expression level of mRNA after specific knock-down of RANBP1 by siRNA in colorectal cancer cells, wherein (a) is the result of mRNA after RANBP1 knock-down of a colorectal cancer cell line HCT116, and (b) is the result of mRNA after RANBP1 knock-down of a colorectal cancer cell line RKO;
FIG. 10 shows the expression levels of protein after specific knockdown of RANBP1 by siRNA in colorectal cancer cells, wherein (a) shows the protein expression after knockdown of RANBP1 in a colorectal cancer cell line HCT116, and (b) shows the protein expression after knockdown of RANBP1 in a colorectal cancer cell line RKO;
FIG. 11 is a graph showing the proliferation potency of colorectal cancer cells after knockdown of RANBP1, wherein (a) is the proliferation potency of cells after knockdown of RANBP1 in a colorectal cancer cell line HCT116, and (b) is the proliferation potency of cells after knockdown of RANBP1 in a colorectal cancer cell line RKO;
FIG. 12 is the clonogenic capacity of HCT116 cells and RKO cells following knockdown of RANBP 1;
FIG. 13 shows cell clone number statistics, wherein (a) is the statistics of HCT116 cells and (b) is the statistics of RKO cells.
Detailed Description
Example 1 database analysis
Colorectal Cancer clinical sample expression profile data including transcriptome sequencing expression profiles of 471 colorectal tumor tissues and 41 adjacent normal tissues, and clinical follow-up data of 394 colorectal Cancer samples were downloaded from The Cancer Genome Atlas (TCGA) data website (https:// Cancer. Differences between groups were analyzed using the statistical two-tailed Student's t test. The analysis shows that the expression level of the RANBP1 gene in the colorectal tumor tissue is obviously higher than that of the normal colorectal tissue (p < 0.0001). TCGA clinical follow-up data shows that the total survival time of colon and rectum tumor patients with high expression of RANBP1 is significantly lower than that of low expression groups (Log-rank test) and has statistical significance.
Example 2 clinical sample analysis
The colorectal cancer clinical samples adopted by the invention are from the first subsidiary hospital of Nanjing medical university and the Drum building hospital of Nanjing City. The project solicited patient consent and approved by the research ethics committee of the university of medical, Nanjing.
(1) Source of tissue specimen
164 tissue samples of clinical colorectal cancer patients were collected at the first subsidiary hospital of Nanjing medical university and the Drum building hospital of Nanjing City (68 of them were from the first subsidiary hospital of Nanjing medical university and 96 were from the drum building hospital of Nanjing City).
The tissue samples are tumor tissue samples of CRC patients and normal mucosa tissues which are more than 5cm away from the tumor tissues respectively, the tissues are immediately put into liquid nitrogen for freezing after being separated in vitro in an operation, and then the tissues are transferred and stored in a refrigerator at the temperature of minus 80 ℃.
Information including patient name, sex, age, surgical record, pathological diagnosis result, enteroscopy result, etc. is collected.
(2)164 sample patient information is as follows
Figure BDA0002673137860000051
(3) Tissue section and immunohistochemistry
a) The tissue is fixed in 4% paraformaldehyde for 24 h;
b) and (3) dehydrating the fixed tissues after the fixed tissues are placed into an embedding frame for embedding: gradient alcohols (70%, 80%, 95%, 100% I and 100% II) each 45min, alcohol-xylene 30min, xylene 20min, xylene-paraffin 30min, low melting paraffin 45min, high melting paraffin 45 min;
c) the tissues were paraffin embedded, sectioned (5 μm thick) using a microtome, and the cut pieces were placed in an oven at 37 ℃ overnight.
d) Continuously placing the paraffin section in an oven at 55 ℃ for 30min, then sequentially carrying out xylene dewaxing, gradient alcohol hydration (for example, HE dyeing), and flushing for 3-5min with running water;
e) placing the slices in citrate buffer solution, performing antigen retrieval in boiling water bath for 10-15min, taking out, and naturally cooling;
f) the cooled slices were washed three times in PBS on a shaker for 5min each time;
g) dripping 3% hydrogen peroxide solution on sliced tissue, standing at 37 deg.C for 20min, washing with PBS for 5min three times;
h) dropwise adding the closed serum on the slices, and standing at 37 ℃ for 60 min;
i) lightly discarding serum, adding RANBP1 antibody (dilution ratio 1:150) diluted with 0.5% BSA-PBS dropwise onto the slices, and freezing at 4 deg.C overnight;
j) taking out the slices on the next day, standing at room temperature for 60min, washing with PBS for three times, 5min each time;
k) adding HRP-labeled rabbit anti-goat secondary antibody (dilution ratio 1:1000) diluted by 0.5% BSA-PBS dropwise onto the slices, incubating at 37 deg.C for 60min, washing with PBS for three times (5 min each time);
l) preparing a DAB developing solution, dropwise adding the DAB developing solution on the slices, reacting at room temperature, observing under a mirror, stopping the reaction in water according to the color development condition, recording the color development time, and flushing with running water for 3-5 min;
m) performing hematoxylin nucleus staining for 30-50s, flushing with running water for 3-5min, and observing nucleus staining conditions under a mirror;
n) neutralizing with 1% hydrochloric acid alcohol for 1-3s, and washing with running water for 5 min;
o) performing gradient alcohol dehydration: 70% alcohol, 80% alcohol, 90% alcohol, 100% alcohol I, 100% alcohol II each for 2min, and xylene I, xylene II each for 2 min;
p) sealing the neutral resin sheet, and airing in a fume hood; and photographed under a microscope.
(4) Statistics and analysis
The protein expression level of RANBP1 in clinical samples was quantitatively analyzed according to immunohistochemical scoring standard (H-Score). The calculation formula of H-Score is as follows: H-Score 0X% no staining + 1X% weak staining + 2X% moderate staining + 3X% strong staining.
Differences between groups were calculated using the statistical two-tailed Student's t test and survival curves were plotted using the Log-rank (Mantel-Cox) test.
(5) Results
The invention utilizes immunohistochemical technology to detect the expression level of RANBP1 in a pathological section of a clinical colorectal tumor tissue and a corresponding normal colorectal tissue, finds that the expression level of RANBP1 in the colorectal tumor tissue is obviously increased (the expression level of RANBP1 in the tumor tissue is 3.1 times of that of the corresponding normal tissue), the expression level of RAN BP1 is related to clinical stages, the expression level of RANBP1 in a later stage III/IV patient tumor tissue is higher than that of a stage I/II patient tumor sample, and at the same time, 164 pairs of clinical samples are divided into a high-expression RANBP1 group (n ═ 82) and a low-expression group (n ═ 82) according to an H-Score median, the clinical patients are subjected to RANBP survival analysis by follow-up information for three years, and the result shows that the expression level of BP1 in colorectal cancer tumors is related to Overall Survival (OS), the high-expression RANBP1 patients have prognosis, and the survival period is shorter than the low-expression group.
Example 3 expression level of RANBP1 in colorectal cancer cell lines
Detecting the protein expression quantity of colorectal cancer cell line (HCT116\ HT-29\ RKO \ SW480) and normal colon cell (FHC) RANBP 1. The method comprises the following steps:
(1) cell culture
HCT116\ RKO \ SW480\ FHC cells were cultured in RPMI (HYCLON) culture medium containing 10% fetal bovine serum (Gibico), 1% triple antibody (Gibico); HT-29 cells were cultured in DMEM (HYCLON) medium containing 10% fetal bovine serum (Gibico), 1% triple antibody (Gibico).
(2) Extraction of Total cellular protein
Adding 200 μ l RIPA containing 10% PI and 10% PMSF into adherent cells of a six-hole plate, shaking the culture plate slightly to make the cells fully contact with liquid, standing on ice for 5min, blowing the cells to separate the walls, transferring the cells into an EP tube, centrifuging after violent shaking at 4 ℃, 12000rpm for 30 min; sucking the supernatant into a new EP tube, and temporarily storing the supernatant on ice;
protein concentration was determined using ddH as described in Byunnan BCA protein concentration assay kit2O the sample proteins were diluted to 300. mu.g/80. mu.l, 20. mu.l of 5 loading buffer was added, the metal bath was 100 ℃ for 5 min. Cooling at room temperature;
(3)Western Blot
a) preparing 10% separating glue and concentrated glue
Figure BDA0002673137860000071
b) Preparing SDS-PAGE glue, firstly pouring the prepared separation glue into a glass plate to prevent bubbles from being generated until the distance between the separation glue and the glass plate is 1.5cm, and slowly adding ddH2O pressing the glue to isolate air, standing for about 30min until the glue surface and the water phase have a clear interface, namely separating glue solidification, pouring out the upper layer liquid, preparing upper layer concentrated glue, adding a glass plate, immediately inserting a comb, and standing for solidification;
c) installing a gel plate in an electrophoresis tank, pouring 1 × electrophoresis liquid into the inner tank and the outer tank, after sample application by a sample loading gun, starting electrophoresis at constant voltage of 85V until marker separation, and adjusting the voltage to 110V until electrophoresis is finished;
d) after the electrophoresis was completed, the gel was taken out and placed in ddH2In O, putting the PVDF membrane in methanol for activation for 20s, and transferring into a pre-cooled membrane transferring liquid; placing sponge and filter paper in the film-rotating splintPlacing gel and a PVDF film in the current direction (from black to red), wherein the gel is arranged on one side of a black plate A, discharging bubbles between each layer by light pressure, closing a clamping plate, placing the clamping plate into a film rotating groove, the gel surface (black side) faces to the negative electrode of the film rotating groove, the PVDF film faces to the positive electrode, pouring a precooled film rotating liquid, placing an ice box, placing the film rotating groove into a refrigerator with the temperature of 4 ℃, keeping the film rotating at low temperature, and rotating the film at constant current for 90min at 0.3A;
e) after the film transfer is finished, taking out the PVDF film, ddH2And O, cleaning twice, putting ponceau for dyeing, observing whether a protein band exists or not, and judging whether the membrane is successfully transferred or not. Cleaning ponceau, sealing with 5% milk-PBST, and standing at room temperature for 1 hr;
f) putting the blocked membrane into an antibody incubation box, adding RANBP1 primary antibody diluted by 5% BSA/TBST according to the proportion of 1:10000, and standing overnight at 4 ℃;
g) on the next day, washing the membrane with TBST, washing 3 times with a shaker for 5min, and washing with TBS for 5 min; adding a secondary antibody diluted by 1:10000, and incubating for 1h at room temperature;
h) washing the membrane with TBST for three times, 5min each time, and washing with TBS for 5 min;
i) preparing ECL developing solution, placing the film and a chemiluminescence imaging system for exposure imaging, and taking a picture and archiving;
(4) results
WB experimental results show that the expression level of RANBP1 in colorectal cancer cells (HCT116\ HT-29\ RKO \ SW480) is obviously higher than that of normal colorectal cell FHC.
Example 4 Effect of RANBP1 on the proliferation and clonogenic Capacity of colorectal cancer cells
Knockdown of RANBP1 with small interfering RNA (siRNA) in colorectal cancer cell lines HCT116 and RKO, detection of knockdown efficiency, was performed as follows:
(1) specific knockdown of RANBP1
The design of small interfering RNA (siRNA) by RiboBio (Ribo) of Guangzhou was entrusted.
The sequence is as follows:
Figure BDA0002673137860000081
seed 1x10 in six-well plate5After each cell was attached, each well was transfected with 5. mu.l of transfection reagent Lipofectamine 2000(Invitrogen) plus 100pmol siRNA as a transfection complex, and 48H after the cells were harvested, RNA was extracted.
(2) Total RNA extraction from cells
Extracting total RNA of cells by a Trizol method. Collect about 1x106For each cell, 500. mu.l Trizol was added. Adding 200ul chloroform, shaking vigorously to mix the upper and lower phases, standing at room temperature for 5min, centrifuging at 12000Xg, and centrifuging at 15min and 4 deg.C. Carefully sucking 160ul of the upper aqueous phase into a new RNase free EP tube, adding equal volume of isopropanol (160ul), reversing and mixing evenly, standing at room temperature for 10min, then centrifuging at 12000Xg and 15min at 4 ℃, and finally, centrifuging to obtain white RNA precipitate in the tube. Discard the supernatant, wash the pellet once with pre-cooled 75% ethanol (DEPC water dilution), 7000xg, 5min, 4 ℃ centrifugation. Abandoning the supernatant, and standing at room temperature for airing (10-15 min) to ensure that the alcohol is completely volatilized. Then 15. mu.l of DEPC water was added to dissolve it, and the concentration was measured for use.
(3) Reverse conversion of RNA to cDNA
Reverse transcription of RNA was performed using a reverse transcription kit (degenomic DNA) of Nanjing Novozam (vazyme) according to the kit instructions, and the reverse transcription system was as follows:
Figure BDA0002673137860000091
mixing the above mixture, reacting at 42 deg.C for 2min with PCR instrument, and continuing the second step of reversion:
Figure BDA0002673137860000092
after mixing, reverse transcription PCR was performed under the following conditions:
50℃,15min;85℃,5s
the obtained cDNA product can be used for Real-time PCR
(4)Real-time PCR
The cDNA of the previous step was used as a template for Real-time PCR using SYBR Green Mix from Novomedium according to the kit instructions. 10 μ l system:
Figure BDA0002673137860000101
after the mixture is mixed evenly, Real-time PCR is carried out, and the reaction conditions are as follows:
95 ℃ for 5 min; 95 ℃ for 10s to 60 ℃ for 30 s; 40 cycles
The primer sequences are as follows:
Figure BDA0002673137860000102
(5) as a result:
the expression of RANBP1 in colorectal cancer cells can be effectively knocked down by using the small interfering RNA.
Example 5 cell proliferation (CCK8) and colony formation
We performed cell proliferation and clonogenic experiments on colorectal tumor cells HCT116 and RKO cells knocked down in RANBP1 as follows:
(1) CCK8 experiment
Respectively inoculating the cells transfected with si-NC and si-RANBP1 into a 96-well plate according to the number of 3000 cells per well, and putting the plate into a cell culture box for more than 8 hours until the cells adhere to the wall;
adding CCK8 reagent according to the concentration of 10%, and continuing culturing for 2 hours;
detecting the absorbance at 450nm by using a microplate reader to obtain the length of the growth of 0h, and performing the same operation every 24 hours till 96 hours;
the fold increase indicates the cell proliferation capacity by comparison with the absorbance at 0 h.
(2) Clone formation experiments
Digesting the cells transfected with si-NC and si-RANBP 148 h, inoculating the cells into a six-hole plate in a number of 500cells/well, shaking the culture plate lightly to uniformly spread the cells, and putting the cells into an incubator for culture;
every 3 days, the complete medium was replaced with a new one until colony formation was visible by eye on day 13;
discarding the culture medium, washing twice with PBS, adding 1ml paraformaldehyde, standing and fixing for 15 min;
adsorbing paraformaldehyde, adding ddH2Washing for 3 times (each time for 2 min);
adding 1ml of 1-crystal violet reagent, standing in dark, dyeing for 15min, and adding ddH2And washing for multiple times until the redundant crystal violet is washed, airing, photographing by a camera, and counting the number of clones.
(3) Results
After the knockdown of RAMBP1, the proliferation capacity of colorectal tumor cells is reduced, and the clonogenic capacity is reduced, thereby proving that RANBP1 is related to the proliferation and clonogenic capacity of colorectal cancer cells.
Combining the results of TCGA data analysis and clinical sample analysis, it was found that expression of RANBP1 was higher in colorectal cancer tissues than in corresponding normal colorectal tissues, and that it was highly expressed in colorectal tumor cell lines. The expression of the RANBP1 of the colorectal cancer cells is knocked down, so that the proliferation of the colorectal cancer cells can be slowed down, and the clonogenic capacity of the colorectal cancer cells is reduced. It is proved that RANBP1 can be used as a molecular marker of colorectal cancer and applied to the preparation of a diagnostic kit of tumors.
The above description is only a preferred embodiment of the present invention, and the scope of the present invention is not limited thereto, and any simple modifications or equivalent substitutions of the technical solutions that can be obviously obtained by those skilled in the art within the technical scope of the present invention are within the scope of the present invention.
Sequence listing
<110> Nanjing university of medical science
<120> molecular marker RANBP1 related to human colorectal cancer and application thereof
<160> 9
<170> SIPOSequenceListing 1.0
<210> 1
<211> 201
<212> PRT
<213> polypeptide (polypeptide)
<400> 1
Met Ala Ala Ala Lys Asp Thr His Glu Asp His Asp Thr Ser Thr Glu
1 5 10 15
Asn Thr Asp Glu Ser Asn His Asp Pro Gln Phe Glu Pro Ile Val Ser
20 25 30
Leu Pro Glu Gln Glu Ile Lys Thr Leu Glu Glu Asp Glu Glu Glu Leu
35 40 45
Phe Lys Met Arg Ala Lys Leu Phe Arg Phe Ala Ser Glu Asn Asp Leu
50 55 60
Pro Glu Trp Lys Glu Arg Gly Thr Gly Asp Val Lys Leu Leu Lys His
65 70 75 80
Lys Glu Lys Gly Ala Ile Arg Leu Leu Met Arg Arg Asp Lys Thr Leu
85 90 95
Lys Ile Cys Ala Asn His Tyr Ile Thr Pro Met Met Glu Leu Lys Pro
100 105 110
Asn Ala Gly Ser Asp Arg Ala Trp Val Trp Asn Thr His Ala Asp Phe
115 120 125
Ala Asp Glu Cys Pro Lys Pro Glu Leu Leu Ala Ile Arg Phe Leu Asn
130 135 140
Ala Glu Asn Ala Gln Lys Phe Lys Thr Lys Phe Glu Glu Cys Arg Lys
145 150 155 160
Glu Ile Glu Glu Arg Glu Lys Lys Ala Gly Ser Gly Lys Asn Asp His
165 170 175
Ala Glu Lys Val Ala Glu Lys Leu Glu Ala Leu Ser Val Lys Glu Glu
180 185 190
Thr Lys Glu Asp Ala Glu Glu Lys Gln
195 200
<210> 2
<211> 837
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 2
gccggcgcca gacgcggagg gaaggagcta cgagtagccg ccgagaggcc gcggagccag 60
cgacgaccga cccagccgag ccgccgccgc cgccgcgccc ccatggcggc cgccaaggac 120
actcatgagg accatgatac ttccactgag aatacagacg agtccaacca tgaccctcag 180
tttgagccaa tagtttctct tcctgagcaa gaaattaaaa cactggaaga agatgaagag 240
gaacttttta aaatgcgggc aaaactgttc cgatttgcct ctgagaacga tctcccagaa 300
tggaaggagc gaggcactgg tgacgtcaag ctcctgaagc acaaggagaa aggggccatc 360
cgcctcctca tgcggaggga caagaccctg aagatctgtg ccaaccacta catcacgccg 420
atgatggagc tgaagcccaa cgcaggtagc gaccgtgcct gggtctggaa cacccacgct 480
gacttcgccg acgagtgccc caagccagag ctgctggcca tccgcttcct gaatgctgag 540
aatgcacaga aattcaaaac aaagtttgaa gaatgcagga aagagatcga agagagagaa 600
aagaaagcag gatcaggcaa aaatgatcat gccgaaaaag tggcggaaaa gctagaagct 660
ctctcggtga aggaggagac caaggaggat gctgaggaga agcaataaat cgtcttattt 720
tattttcttt tcctctcttt cctttccttt ttttaaaaaa ttttaccctg cccctctttt 780
tcggtttgtt tttattcttt catttttaca agggacgtta tataaagaac tgaactc 837
<210> 3
<211> 19
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 3
gccatccgct tcctgaatg 19
<210> 4
<211> 23
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 4
tctctcttcg atctctttcc tgc 23
<210> 5
<211> 19
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 5
gcaggaaaga gatcgaaga 19
<210> 6
<211> 19
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 6
gggcaaaact gttccgatt 19
<210> 7
<211> 19
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 7
acgtcaagct cctgaagca 19
<210> 8
<211> 22
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 8
tcatgaagtg tgacgtggac at 22
<210> 9
<211> 22
<212> DNA
<213> Artificial Sequence (Artificial Sequence)
<400> 9
ctcaggagga gcaatgatct tg 22

Claims (6)

1. The application of a molecular marker RANBP1 related to human colorectal cancer in preparing related products for colorectal cancer diagnosis or prognosis evaluation is characterized in that the amino acid sequence of the molecular marker RANBP1 is shown as SEQ NO. 1.
2. The use of claim 1, wherein the related product is a detection reagent.
3. The use according to claim 2, wherein the detection reagent comprises the molecular marker RANBP1 according to claim 1.
4. The use according to claim 2, wherein the detection reagent comprises an antibody that specifically binds to the molecular marker RANBP1 and the detection method is immunohistochemistry.
5. The use of claim 4, wherein the antibody is a monoclonal or polyclonal antibody.
6. The use of claim 5, wherein the detection reagent comprises primers for the amplification marker RANBP1, RANBP 1-F: 5'-GCCATCCGCTTCCTGAATG-3', RANBP1-R: 5'-TCTCTCTTCGATCTCTTTCCTGC-3', and the detection method used by the detection reagent is qRT-PCR method.
CN202010939514.9A 2020-09-09 2020-09-09 Molecular marker RANBP1 related to human colorectal cancer and application thereof Active CN111848773B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202010939514.9A CN111848773B (en) 2020-09-09 2020-09-09 Molecular marker RANBP1 related to human colorectal cancer and application thereof

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202010939514.9A CN111848773B (en) 2020-09-09 2020-09-09 Molecular marker RANBP1 related to human colorectal cancer and application thereof

Publications (2)

Publication Number Publication Date
CN111848773A CN111848773A (en) 2020-10-30
CN111848773B true CN111848773B (en) 2021-04-02

Family

ID=72968385

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202010939514.9A Active CN111848773B (en) 2020-09-09 2020-09-09 Molecular marker RANBP1 related to human colorectal cancer and application thereof

Country Status (1)

Country Link
CN (1) CN111848773B (en)

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107099584A (en) * 2017-04-06 2017-08-29 哈尔滨医科大学 A kind of molecular marked compound related to colorectal cancer transfer and prognosis and its application
CN109735622A (en) * 2019-03-07 2019-05-10 天津市第三中心医院 LncRNA relevant to colorectal cancer and its application

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107099584A (en) * 2017-04-06 2017-08-29 哈尔滨医科大学 A kind of molecular marked compound related to colorectal cancer transfer and prognosis and its application
CN109735622A (en) * 2019-03-07 2019-05-10 天津市第三中心医院 LncRNA relevant to colorectal cancer and its application

Non-Patent Citations (2)

* Cited by examiner, † Cited by third party
Title
Bischoff,F.R.等.H.sapiens mRNA for RanBP1,ACCESSION NO. X83617.1.《GenBank Database》.2008,CDS部分,translation,ORIGIN部分. *
H.sapiens mRNA for RanBP1,ACCESSION NO. X83617.1;Bischoff,F.R.等;《GenBank Database》;20081007;CDS部分,translation,ORIGIN部分 *

Also Published As

Publication number Publication date
CN111848773A (en) 2020-10-30

Similar Documents

Publication Publication Date Title
WO2014061419A1 (en) Novel cancer marker and utilization thereof
WO2015149450A1 (en) Ehd2 antibody and application thereof in preparation of immunohistochemical detection reagent for breast cancer
WO2021004372A1 (en) Application of metformin in treatment of kras mutant colorectal cancer
CN111848773B (en) Molecular marker RANBP1 related to human colorectal cancer and application thereof
CN111856014A (en) Molecular marker MLLT11 for diagnosing and treating bladder cancer and application thereof
CN111621567A (en) Marker for diagnosing liver cancer, detection reagent and application thereof
CN107144695B (en) Application of the Arl13b albumen in cancer diagnosis
CN113293208B (en) Molecular marker related to lung cancer proliferation and metastasis and application thereof
CN110408695A (en) Malignant Neoplasms Arising from Endometriosis correlation ovarian cancer diagnosis or prognostic marker and application
CN113278696B (en) Molecular marker RAD51B-AS1 and application thereof
CN110951880B (en) Application of reagent for detecting lncRNA marker of hypopharynx cancer in preparation of product for diagnosing hypopharynx cancer
CN111635939A (en) Product for detecting RBP1 gene or protein and application
CN111304325B (en) Oral cancer marker STOML1 gene expression and application thereof
WO2024050860A1 (en) Diagnosis reagent for phyllodes tumor and use thereof
CN111118153B (en) Oral cancer marker TAF1L gene expression and application thereof
CN113101368B (en) Application of SLC7A8 in auxiliary diagnosis, precancerous early warning and targeted therapy of esophageal squamous cell carcinoma
CN114774547B (en) Molecular marker USP13 related to human osteosarcoma and application thereof
CN107022627A (en) The siRNA of application and the suppression KPNA2 gene expressions of KPNA2 genes application
CN116356019A (en) Molecular marker KRDDAP related to human melanoma and application thereof
CN113337607B (en) Molecular marker for detecting or evaluating curative effect of liver cancer and application
CN114231623B (en) Application of Palmdelphin in preparation of human colorectal cancer detection and treatment products
CN113855675A (en) Kit and medicine based on gallbladder cancer marker
CN111269982B (en) Application of SNEP1 protein in diagnosis of colorectal cancer
CN116064767B (en) LncRNA marker related to osteoarthritis and application thereof
CN114774546B (en) Human osteosarcoma-related molecular marker TRIM22 and application thereof

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant