CN107641662A - For detecting the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7mRNA partings - Google Patents
For detecting the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7mRNA partings Download PDFInfo
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Abstract
The present invention relates to for detecting a kind of viral primer and probe and kit, the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7 mRNA partings are more particularly, to detected, belongs to technological field of biochemistry.The present invention cleverly designs specific upstream and downstream primer and corresponding specific molecular beacon probe by using oncogene E6/E7 and internal reference the β Actin to 13 kinds of high-risk HPVs, carries out specific amplification to 13 kinds of high-risk HPVs and internal reference β Actin and high specific detects.The present invention can be used to carry out HPV oncogene E6/E7 mRNA real-time quantitative and parting detects, and molecular beacon probe can also be used 13 kinds of high-risk HPVs are carried out with the detection of qualitative and parting in PCR terminals.HPV16,18,31,33,35,39,45,51,52,56,58,59,68 that 13 kinds of high-risk HPVs refer in the present invention.The present invention is used as detection target using HPV oncogene E6/E7 mRNA, it can not only effectively overcome traditional using HPV L1 DNA as the false positive and false negative result caused by detection method, while the molecular beacon probe utilized in the present invention has that detection sensitivity is high, specificity is high, simple operation and other advantages.
Description
Technical field
The present invention relates to for detecting a kind of viral primer and probe and kit, high-risk-type is more particularly, to detected
The primer and probe and kit of human papilloma virus E6/E7 mRNA partings, belong to technological field of biochemistry.
Background technology
Cervical carcinoma (cervical carcinoma) is one of women common cancer, and it is uniquely to find out so far
Nosogenetic cancer, it is by single hypotype high-risk-type human papilloma virus (Human Papilloma virus, abbreviation
HPV) caused by persistent infection.
HPV belongs to the papilloma vacuolating virus A category of papovaviridae, is spherical DNA viruses, can cause human body skin
The scaly epithelium propagation of mucous membrane.Research show more than 99% cervical carcinoma be due to infection HPV caused by.HPV presses infection portion
Position classification can be divided into epitheliated type and mucosal pattern, and wherein epitheliated type includes 1,5,8,14,20,21,25,47 types, and mucous membrane type includes
6th, 11,16,18,31,33,35,39,41,45,51,52,56,58,59,68,70 type;It can be divided into according to degree of danger high-risk
Type and low risk, wherein low risk include 6,11,41,42,43,44,66 types, high-risk-type includes 16,18,31,33,35,39,
45th, 51,52,56,58,59,68 type, easily causes cervical carcinoma.HPV include six early stage controlling genes (E1, E2, E4, E5, E6,
) and two late genes (L1, L2) E7.Early gene participates in the functions such as duplication, transcription, translation and the cell transformation of viral DNA,
And the function of late gene is the capsid protein of coding virus.Wherein two early genes of E6, E7 inhibit the suppression of tumour respectively
Oncogene P53 and Rb and direct relation be present in generation with cervical carcinoma, development.
Research shows that at least 50% adult for having sexuality once infects HPV in life at it, and at least 80% women exists
HPV is once infected before 50 years old.But 80%HPV the infected can voluntarily disappear in 2 years, if this groups of people is used as inspection using HPV DNA
Survey target, it will be positive.Only 20% HPV infection person can further develop, i.e. E6/E7 gene integrations to human genome
By being translated as E6/E7 albumen after transcribing out E6/E7 mRNA, precancerous lesion and cervical carcinoma are induced.So the present invention is with HPV
E6/E7 mRNA are as detection target.
The probe commonly used in quantitative fluorescent PCR is TaqMan probe and molecular beacon probe.Wherein TaqMan probe is deposited
Relatively low in Tm values, heat endurance is weak, the problems such as hybrid specificities are low, easily causes quantitative fluorescent PCR final detection result and vacation occurs
Positive situation.At present, a domestic only HPV E6/E7 mRNA kits manufacturer, should using hybrid capture
The method operating time is grown, and sensitivity is low and cannot be distinguished by specific type.
The content of the invention
The purpose of the present invention is to be directed to the defects of testing result existing for prior art is inaccurate, and sensitivity is low, proposes to use
In the primer and probe and kit of detection high-risk human mammilla papillomavirus E6/E7 mRNA partings, testing result has preferable
Clinical reference value.
Present invention firstly provides be primer and spy for detecting high-risk human mammilla papillomavirus E6/E7 mRNA partings
Pin group, the primer include 13 kinds of high-risk HPVs and internal reference β-Actin upstream and downstream primer and molecular beacon probe probe groups,
It is specific as follows:
HPV16 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.1 in sequence table, the SEQ ID NO.2 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.3;Second group, the SEQ ID NO.4 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.6 in NO.5, probe such as sequence table;3rd group, the SEQ ID NO.7 in sense primer such as sequence table, downstream
SEQ ID NO.8 in primer such as sequence table, the SEQ ID NO.9 in probe such as sequence table;
HPV18 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.10 in sequence table, the SEQ ID NO.11 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.12;Second group, the SEQ ID NO.13 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.15 in NO.14, probe such as sequence table;3rd group, the SEQ ID NO.16 in sense primer such as sequence table, under
Swim the SEQ ID NO.17 in primer such as sequence table, the SEQ ID NO.18 in probe such as sequence table;
HPV31 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.19 in sequence table, the SEQ ID NO.20 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.21;Second group, the SEQ ID NO.22 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.24 in NO.23, probe such as sequence table;3rd group, the SEQ ID NO.25 in sense primer such as sequence table, under
Swim the SEQ ID NO.26 in primer such as sequence table, the SEQ ID NO.27 in probe such as sequence table;
HPV33 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.28 in sequence table, the SEQ ID NO.29 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.30;Second group, the SEQ ID NO.31 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.33 in NO.32, probe such as sequence table;3rd group, the SEQ ID NO.34 in sense primer such as sequence table, under
Swim the SEQ ID NO.35 in primer such as sequence table, the SEQ ID NO.36 in probe such as sequence table;
HPV35 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.37 in sequence table, the SEQ ID NO.38 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.39;Second group, the SEQ ID NO.40 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.42 in NO.41, probe such as sequence table;3rd group, the SEQ ID NO.43 in sense primer such as sequence table, under
Swim the SEQ ID NO.44 in primer such as sequence table, the SEQ ID NO.45 in probe such as sequence table;
HPV39 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.46 in sequence table, the SEQ ID NO.47 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.48;Second group, the SEQ ID NO.49 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.51 in NO.50, probe such as sequence table;3rd group, the SEQ ID NO.52 in sense primer such as sequence table, under
Swim the SEQ ID NO.53 in primer such as sequence table, the SEQ ID NO.54 in probe such as sequence table;
HPV45 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.55 in sequence table, the SEQ ID NO.56 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.57;Second group, the SEQ ID NO.58 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.60 in NO.59, probe such as sequence table;3rd group, the SEQ ID NO.61 in sense primer such as sequence table, under
Swim the SEQ ID NO.62 in primer such as sequence table, the SEQ ID NO.63 in probe such as sequence table;
HPV51 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.64 in sequence table, the SEQ ID NO.65 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.66;Second group, the SEQ ID NO.67 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.69 in NO.68, probe such as sequence table;3rd group, the SEQ ID NO.70 in sense primer such as sequence table, under
Swim the SEQ ID NO.71 in primer such as sequence table, the SEQ ID NO.72 in probe such as sequence table;
HPV52 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.73 in sequence table, the SEQ ID NO.74 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.75;Second group, the SEQ ID NO.76 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.78 in NO.77, probe such as sequence table;3rd group, the SEQ ID NO.79 in sense primer such as sequence table, under
Swim the SEQ ID NO.80 in primer such as sequence table, the SEQ ID NO.81 in probe such as sequence table;
HPV56 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.82 in sequence table, the SEQ ID NO.83 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.84;Second group, the SEQ ID NO.85 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.87 in NO.86, probe such as sequence table;3rd group, the SEQ ID NO.88 in sense primer such as sequence table, under
Swim the SEQ ID NO.89 in primer such as sequence table, the SEQ ID NO.90 in probe such as sequence table;
HPV58 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.91 in sequence table, the SEQ ID NO.92 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.93;Second group, the SEQ ID NO.94 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.96 in NO.95, probe such as sequence table;3rd group, the SEQ ID NO.97 in sense primer such as sequence table, under
Swim the SEQ ID NO.98 in primer such as sequence table, the SEQ ID NO.99 in probe such as sequence table;
HPV59 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.100 in sequence table, the SEQ ID NO.101 in anti-sense primer such as sequence table, probe is as in sequence table
SEQ ID NO.102;Second group, the SEQ ID NO.103 in sense primer such as sequence table, anti-sense primer is as in sequence table
SEQ ID NO.104, the SEQ ID NO.105 in probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.107 in NO.106, anti-sense primer such as sequence table, the SEQ ID NO.108 in probe such as sequence table;
HPV68 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.109 in sequence table, the SEQ ID NO.110 in anti-sense primer such as sequence table, probe is as in sequence table
SEQ ID NO.111;Second group, the SEQ ID NO.112 in sense primer such as sequence table, anti-sense primer is as in sequence table
SEQ ID NO.113, the SEQ ID NO.114 in probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.116 in NO.115, anti-sense primer such as sequence table, the SEQ ID NO.117 in probe such as sequence table;
SEQ ID NO.118 in β-Actin sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.120 in NO.119, probe such as sequence table.
The probe groups also include the reverse complementary sequence in all molecular beacon probe areas.
The present invention further provides the kit for detecting high-risk human mammilla papillomavirus E6/E7 mRNA partings, institute
State kit and contain the μ L of reverse transcription premixed liquid 300;QRT-PCR premixed liquids 1.6mL;13 kinds of high-risk HPVs and internal reference β-Actin
Upstream and downstream primer and probe groups, each of which HPV hypotypes and internal reference β-Actin upstream and downstream primer are 10 μ Μ, 160 μ L,
Molecular beacon probe is 10 μ Μ, 100 μ L;The μ L of strong positive quality-control product 500;The μ L of weakly positive quality-control product 500 and negative controls
500μL。
The reverse transcription premixed liquid in mentioned reagent box includes 100-300nM dNTP, 5-20U/ μ L reverse transcription
Enzyme, 0.3-1U/ μ L RNase inhibitors, random primer and the sulphur of poly T primers and 50mM pH8.3 Tris-HCl, 6mM bis- Soviet Union
Sugar alcohol, wherein 40mM KCl, 0.5mM dTTP composition, random primer are that tetra- kinds of bases of A, G, C, T form at random
6 aggressiveness, poly T is 18-25 poly T base composition.
The qRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L
Taq archaeal dna polymerases, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl groups
Into.
The primer and probe of the kit can be visited by HPV16 primed probes group, HPV18 primed probes group, β-Actin primers
Pin group and a kind of zero to ten other high-risk HPVs (HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52,
HPV56, HPV58, HPV59, HPV68) random combine as needed.
The fluorophor of the 5' ends mark of the molecular beacon is appointing in organic fluorescent dye or quantum dot inorganic dyestuff
One kind, 3' ends mark quencher are the nano-particles such as any or gold nano of organic dyestuff.
The organic fluorescent dye is FAM, VIC, HEX, TRT, Cy3, Cy5, ROX and JOE, and the organic dyestuff is
TAMRA, DABCYL, MGB, BHQ-1, BHQ-2 and BHQ-3.
Positive quality control product is by the high-risk HPV DNA fragmentation in acknowledged detection range containing kit is sequenced
The RNA or its complementary series that plasmid transcription goes out, the wherein concentration of strong positive quality-control product are 1 × 107Copies/ μ L, weakly positive matter
The concentration of control product is 1 × 103 copies/μL。
The negative controls are the water of DEPC processing.
For the present invention by the use of random primer and poly T as the primer of reverse transcription, it is cDNA that can reverse total mRNA, is only needed
Once reverse the detection for being applicable to all models other HPV and reference gene β-Actin.Detection is used as using HPV E6/E7 mRNA
Target, there is more preferable clinical reference value compared with using HPV DNA as detection target object detection method.Simultaneously by skilful
Wonderful design HPV oncogene E6/E7 and internal reference β-Actin specific upstream and downstream primer and corresponding specific molecular letter
Probe is marked, parting detection is carried out to high-risk HPV using qRT-PCR as detection instrument.Molecular beacon probe can be fine simultaneously
The shortcomings that overcoming qRT-PCR often to use probe Taqman probes (Tm values are relatively low, and heat endurance is weak, and hybrid specificities are low etc.).This
The invention kit advantage such as have high sensitivity, specificity, precision, simple to operate and cost low, is suitable for pushing away on a large scale
Wide application.
Brief description of the drawings
Fig. 1 is HPV16 amplification curve diagram (A);HPV16 canonical plotting (B).
Fig. 2 is that HPV18 mRNA detect amplification curve diagram in Hela cells.
Fig. 3 this kit Precision Experiment figure (A) amplification curve diagram;(B) Ct values summary view.
Embodiment
Embodiment
A kind of 13 kinds of high-risk human mammilla papillomavirus mRNA detection kits are provided in the present embodiment, can be to 13 kinds of height
Danger type human papilloma virus E6/E7 mRNA are detected, and testing result can be used for the auxiliary diagnosis and uterine neck of clinical HPV infection
The early screening of cancer.By taking HPV16 as an example, other hypotypes prepare identical the present embodiment with HPV16, repeat no more.
Specifically carry out according to the following steps:
1. pair 13 kinds of high-risk HPV E6/E7 gene orders inquiries:
It is high-risk by 13 kinds of National Center for Biotechnology Information (NCBI) inquiries
Type HPV E6/E7 gene orders, names of the wherein HPV16 in GenBank are NC_001526.4, and HPV16 E6 correspond to base
Position corresponds to base positions in 7604-7900 in 7125-7601, HPV16 E7;HPV18 names in GenBank are
AY262282., HPV18 E6 correspond to base positions and correspond to base positions in 590-907 in 105-581, HPV18 E7;HPV31
Name is J04353.1 in GenBank, and HPV31 E6 correspond to base positions and correspond to base positions in 108-557, HPV31 E7
In 560-856;Wherein HPV33 names in GenBank are M12732.1, and HPV33 E6 correspond to base positions in 109-558,
HPV33 E7 correspond to base positions in 573-866;HPV35 names in GenBank are M74117.1, and HPV35 E6 correspond to alkali
Base location corresponds to base positions in 562-861 in 110-559, HPV35 E7;HPV39 names in GenBank are
KC470245.1, HPV39 E6 correspond to base positions and correspond to base positions in 592-921 in 107-583, HPV39 E7;HPV45
Name is KC470260.1 in GenBank, and HPV45 E6 correspond to base positions and correspond to base in 102-578, HPV45 E7
Position is in 587-907;HPV51 names in GenBank are M62877.1, and HPV51 E6 correspond to base positions in 70-536,
HPV51 E7 correspond to base positions in 554-831;HPV52 names in GenBank are HQ537751.1, and HPV52 E6 are corresponding
Base positions correspond to base positions in 553-852 in 102-548, HPV52 E7;HPV56 names in GenBank are
X74483.1, HPV56 E6 correspond to base positions and correspond to base positions in 572-889 in 102-566, HPV56 E7;HPV58
Name is D90400.1 in GenBank, and HPV58 E6 correspond to base positions and correspond to base positions in 110-559, HPV58 E7
In 574-870;HPV59 names in GenBank are X77858.1, and HPV59 E6 correspond to base positions in 55-537, HPV59
E7 corresponds to base positions in 542-865;HPV68 names in GenBank are DQ080079.1, and HPV68 E6 correspond to base position
Put and correspond to base positions in 484-816 in 1-477, HPV68 E7.
2. pair 13 kinds of high-risk HPV E6/E7 upstream and downstream primers and molecular beacon probe design:
Using Beacon Designer, Primer Premier5 and NCBI Photographing On-lines software to 13 kinds of high-risk HPVs
And reference gene β-Actin upstream and downstream primer and molecular beacon probe are designed, specific design flow is as follows:
(1) using Primer Premier5 and NCBI Photographing On-line softwares to 13 kinds of high-risk HPVs and reference gene β-
Actin upstream and downstream primer is designed.(2) according to upstream and downstream design of primers molecular beacon sequences, and RNA is utilized
Structure, OligoAnalyzer 3.1 and mfold is predicted to its structure;(3) NCBI checking primers and probe are utilized
Specificity.
Upstream and downstream primer is both needed to meet following condition:(1) between amplified production length 60-250bp;(2) primer length
15-25bp;(3) 3 ' ends of primer avoid high GC or high AT concentration areas;(4) it is G or C that primer 3 ', which holds last base,
Avoid using T;(5) the Tm values of forward primer and reverse primer, which preferably differ, does not exceed 5 DEG C.Tm values are adjusted to 52 DEG C -62
℃;(6) G/C content of primer is controlled between 30%-70% preferably;(7) primer A, G, C, T overall distributions are as far as possible uniform, keep away
Exempt from, using the high region of GC or TA contents, especially 3 ' ends, to avoid the uneven region of G/C content;(8) please during design of primers
T/C or A/G continuous structure are avoided as far as possible;Design of primers finishes retrieves verification primer specificity with NCBI BLAST functions,
To avoid non-specific amplification from producing.
Molecular beacon design follows following principle:(1) probe length control is in 18-35bp;(2) the Tm value ratios of probe draw
The Tm values of thing are about high 5-15 DEG C;(3) (G+C) % of probe is between 25%-70%;(4) two level knot is not present in probe region in itself
Structure;
Upstream and downstream primer and the probe groups for obtaining 13 kinds of high-risk HPVs and internal reference β-Actin are as follows:
HPV16 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.1 in sequence table, the SEQ ID NO.2 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.3;Second group, the SEQ ID NO.4 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.6 in NO.5, probe such as sequence table;3rd group, the SEQ ID NO.7 in sense primer such as sequence table, downstream
SEQ ID NO.8 in primer such as sequence table, the SEQ ID NO.9 in probe such as sequence table;
HPV18 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.10 in sequence table, the SEQ ID NO.11 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.12;Second group, the SEQ ID NO.13 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.15 in NO.14, probe such as sequence table;3rd group, the SEQ ID NO.16 in sense primer such as sequence table, under
Swim the SEQ ID NO.17 in primer such as sequence table, the SEQ ID NO.18 in probe such as sequence table;
HPV31 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.19 in sequence table, the SEQ ID NO.20 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.21;Second group, the SEQ ID NO.22 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.24 in NO.23, probe such as sequence table;3rd group, the SEQ ID NO.25 in sense primer such as sequence table, under
Swim the SEQ ID NO.26 in primer such as sequence table, the SEQ ID NO.27 in probe such as sequence table;
HPV33 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.28 in sequence table, the SEQ ID NO.29 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.30;Second group, the SEQ ID NO.31 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.33 in NO.32, probe such as sequence table;3rd group, the SEQ ID NO.34 in sense primer such as sequence table, under
Swim the SEQ ID NO.35 in primer such as sequence table, the SEQ ID NO.36 in probe such as sequence table;
HPV35 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.37 in sequence table, the SEQ ID NO.38 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.39;Second group, the SEQ ID NO.40 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.42 in NO.41, probe such as sequence table;3rd group, the SEQ ID NO.43 in sense primer such as sequence table, under
Swim the SEQ ID NO.44 in primer such as sequence table, the SEQ ID NO.45 in probe such as sequence table;
HPV39 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.46 in sequence table, the SEQ ID NO.47 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.48;Second group, the SEQ ID NO.49 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.51 in NO.50, probe such as sequence table;3rd group, the SEQ ID NO.52 in sense primer such as sequence table, under
Swim the SEQ ID NO.53 in primer such as sequence table, the SEQ ID NO.54 in probe such as sequence table;
HPV45 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.55 in sequence table, the SEQ ID NO.56 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.57;Second group, the SEQ ID NO.58 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.60 in NO.59, probe such as sequence table;3rd group, the SEQ ID NO.61 in sense primer such as sequence table, under
Swim the SEQ ID NO.62 in primer such as sequence table, the SEQ ID NO.63 in probe such as sequence table;
HPV51 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.64 in sequence table, the SEQ ID NO.65 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.66;Second group, the SEQ ID NO.67 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.69 in NO.68, probe such as sequence table;3rd group, the SEQ ID NO.70 in sense primer such as sequence table, under
Swim the SEQ ID NO.71 in primer such as sequence table, the SEQ ID NO.72 in probe such as sequence table;
HPV52 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.73 in sequence table, the SEQ ID NO.74 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.75;Second group, the SEQ ID NO.76 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.78 in NO.77, probe such as sequence table;3rd group, the SEQ ID NO.79 in sense primer such as sequence table, under
Swim the SEQ ID NO.80 in primer such as sequence table, the SEQ ID NO.81 in probe such as sequence table;
HPV56 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.82 in sequence table, the SEQ ID NO.83 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.84;Second group, the SEQ ID NO.85 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.87 in NO.86, probe such as sequence table;3rd group, the SEQ ID NO.88 in sense primer such as sequence table, under
Swim the SEQ ID NO.89 in primer such as sequence table, the SEQ ID NO.90 in probe such as sequence table;
HPV58 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.91 in sequence table, the SEQ ID NO.92 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.93;Second group, the SEQ ID NO.94 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.96 in NO.95, probe such as sequence table;3rd group, the SEQ ID NO.97 in sense primer such as sequence table, under
Swim the SEQ ID NO.98 in primer such as sequence table, the SEQ ID NO.99 in probe such as sequence table;
HPV59 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.100 in sequence table, the SEQ ID NO.101 in anti-sense primer such as sequence table, probe is as in sequence table
SEQ ID NO.102;Second group, the SEQ ID NO.103 in sense primer such as sequence table, anti-sense primer is as in sequence table
SEQ ID NO.104, the SEQ ID NO.105 in probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.107 in NO.106, anti-sense primer such as sequence table, the SEQ ID NO.108 in probe such as sequence table;
HPV68 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer
Such as the SEQ ID NO.109 in sequence table, the SEQ ID NO.110 in anti-sense primer such as sequence table, probe is as in sequence table
SEQ ID NO.111;Second group, the SEQ ID NO.112 in sense primer such as sequence table, anti-sense primer is as in sequence table
SEQ ID NO.113, the SEQ ID NO.114 in probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.116 in NO.115, anti-sense primer such as sequence table, the SEQ ID NO.117 in probe such as sequence table;
SEQ ID NO.118 in β-Actin sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.120 in NO.119, probe such as sequence table.
Above-mentioned probe groups also include the reverse complementary sequence in all molecular beacon probe areas.
The acquisition of 3 positive reference product
Target gene conversion Escherichia coli (by taking HPV16 as an example)
Detection of high risk human papillomavirus HPV16 E6/E7 sequences are inserted into plasmid pUC57 construction recombination plasmids, the recombinant plasmid
It is transformed into Escherichia coli top10.Above section hands over Sangon Biotech (Shanghai) Co., Ltd.) limited company's completion.Wherein HPV16
E6/E7 gene orders (SEQ ID NO:121) it is as follows:
Escherichia coli are cultivated
Escherichia coli are in solid LB media (tryptone 10g/L, yeast extract 5 g/L, sodium chloride 10g/L, ammonia benzyl
Penicillin 50 μ g/ml, agar 15g/L) 37 DEG C be incubated overnight, picking single bacterium fall on LB liquid medium (tryptone 10g/L,
Yeast extract 5g/L, sodium chloride 10g/L, the μ g/ml of ampicillin 50) culture 5-8h.12000r/min centrifugations 1min is collected
Coli somatic.
Plasmid extraction in Escherichia coli
Plasmid extraction is extracted using the small extraction reagent kit of Tiangeng DP103-02 plasmids, and extraction step refers to its specification portion
Point.Quantitative detection is carried out to the plasmid of extraction using One Drop.The copy number calculating method of target sequence is as follows:
Copy number=quality (g) × 6.23 × 1023/324.5 of target sequence × DNA length
HPV16 target gene (being used as template using the plasmid of extraction) concrete operations only praise T7High with reference to promise in amplification plasmid
Yield RNA Transcription Kit require to carry out.
Upstream primer sequence (such as sequence table SEQ ID NO:122) it is as follows:
TAATACGACTCACTATAGGGATGCACCAAAAGAGAACTGC
Downstream primer sequence (such as sequence table SEQ ID NO:123) it is as follows:CTGAGAACAGATGGGGCAC
System such as table 1:
Table 1
Reagent | Volume (μ L) |
QRT-PCR premixed liquids | 10 |
Sense primer 10 | 0.4 |
Anti-sense primer | 0.4 |
Template | 2 |
DEPC water | Mend to 20 |
QRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L taq DNA
Polymerase, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl compositions.
Amplification condition such as table 2:
Table 2
Gel electrophoresis analysis
Enter row agarose gel electrophoresis point to PCR primer using 2% agarose gel electrophoresis (voltage 110V, 20min)
Analysis, the band about at 750bp is isolated, obtain PCR purified products.
In-vitro transcription
System such as table 3:
Table 3
Component | Volume (μ L) |
10×Reaction Buffer | 2 |
ATP Solution | 2 |
GTP Solution | 2 |
UTP Solution | 2 |
CTP Solution | 2 |
PCR purified products | 2 |
T7RNA Polymerase Mix | 2 |
RNase-free H2O | Supply 20 |
Gently mix each component with pipettor, and it is of short duration be collected by centrifugation, 37 DEG C incubation 2h.
1 μ l DNase I, 37 DEG C of incubation 15min are added in reaction system, digest the DNA profiling of transcription.
The RNA of synthesis carries out purifying using phenol/chloroform method of purification and is used to remove removing protein and most of free nucleotide.Specifically
It is as follows.
A. 160 μ L RNase-free H are added2O is by product dilution to 180 μ L.
B. 20 μ L 3M sodium acetate (pH 5.2) is added into the product after dilution, is fully mixed with pipettor.
C. 200 μ L phenol/chloroform mixed liquor (1 is added:1) it is stripped, room temperature 10000rpm centrifugation 5min, by upper strata
Solution (aqueous phase) is transferred in new RNase-free EP pipes.
D. add the chloroform isometric with aqueous phase 2 times, collect upper strata aqueous phase.
E. absolute ethyl alcohol and the mixing of 2 times of volumes, -20 DEG C of incubations at least 30min, 4 DEG C of 15000rpm centrifugations are added
15min。
F. abandon supernatant and add the 70% ethanol washing RNA precipitate of 500 μ L precoolings, 4 DEG C of 15000rpm centrifugations, abandon supernatant.
G. uncap dry 2min, adds 20-50 μ L RNase-free H2O or other buffer solution RNA precipitates.
It is positive reference product that h.-80 DEG C, which preserves RNA sample,.
Copy number=quality (g) × 6.23 × 1023/324.5 of positive quality control product × target RNA length
The same HPV16 of construction method of other positive reference materials, is repeated no more.
Wherein positive quality control product is made up of HPV16 and HPV18 positive reference product.2 HPV16 upstream and downstream primers and point
Sub- beacon probe detects positive quality control product sensitivity analysis
(exemplified by HPV16) specific as follows is analyzed using this kit detection sensitivity
This kit contains the μ L of reverse transcription premixed liquid 300;QRT-PCR premixed liquids 1.6mL;13 kinds of high-risk HPVs and internal reference
β-Actin upstream and downstream primers and probe groups, each of which HPV hypotypes and internal reference β-Actin upstream and downstream primer are 10 μ
Μ, 160 μ L, every HPV hypotypes and internal reference β-Actin molecular beacon probe are 10 μ Μ, 100 μ L;Strong positive quality-control product
500μL;The μ L of the weakly positive quality-control product 500 and μ L of negative controls 500.
Contain the μ L of reverse transcription premixed liquid 300;QRT-PCR premixed liquids 1.6mL;13 kinds of high-risk HPVs and internal reference β-Actin
Upstream and downstream primer sets, each of which HPV hypotypes and internal reference β-Actin upstream and downstream primer and probe groups are upstream and downstream primer
10 μ Μ, 160 μ L;13 kinds of high-risk HPVs and internal reference β-Actin detections molecular beacon probe group, each of which HPV hypotypes
And internal reference β-Actin molecular beacon probe is 10 μ Μ, 100 μ L;The μ L of strong positive quality-control product 500;The μ of weakly positive quality-control product 500
The L and μ L of negative controls 500.
This kit also provides strong positive quality-control product, weakly positive quality-control product and negative control simultaneously, specific as follows:Positive matter
Control product are gone out by the plasmid in-vitro transcription for the high-risk HPV DNA fragmentation being sequenced in acknowledged detection range containing kit
MRNA or its complementary series, the wherein concentration of strong positive quality-control product are 1 × 107Copies/ μ L, the concentration of weakly positive quality-control product
For 1 × 103Copies/ μ L, negative controls are the water of DEPC processing.
The kit can be by HPV16 primed probes group, HPV18 primed probes group, β-Actin primed probes groups and zero
To a kind of ten other high-risk HPVs (HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV56, HPV58,
HPV59, HPV68) need to be combined according to experiment.
Take 20 μ L HPV16 positive references product to add the water of 180 μ L DEPC processing, carry out gradient dilution successively, obtain not
With the positive quality control product of gradient.It is followed successively by 1 × 109 copies/μL、1×108copies/μL、1×107copies/μL、1×
106copies/ μL、1×105copies/μL、1×104copies/μL、1×103copies/μL、 1×102copies/μL。
Reverse transcription system such as table 4:
Table 4
Reverse transcription premixed liquid includes 100-300nM dNTP, 5-20U/ μ L reverse transcriptase, the suppression of 0.3-1U/ μ L RNases
Preparation, random primer and poly T primers and 50mM pH8.3 Tris-HCl, 6mM dithiothreitol (DTT)s, 40mM KCl, 0.5mM tri-
Phosphoric acid AZT forms, and wherein random primer is 6 aggressiveness that tetra- kinds of bases of A, G, C, T form at random, and poly T is 18-25
Poly T base compositions.
Reaction condition such as table 5:
Table 5
- 20 DEG C of preservations of reverse transcription product (cDNA).
The cDNA of upstream and downstream primer and molecular beacons detection positive reference product is verified using qRT-PCR.
QRT-PCR reaction systems such as table 6:
Table 6
QRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L taq DNA
Polymerase, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl compositions.
HPV16 upstream primer sequences are as follows:CACTGTGTCC TGAAGAAAAG C
HPV16 upstream primer sequences are as follows:TGGGTTTCTC TACGTGTTCT TG
HPV16 molecular beacon probe sequences are as follows:FAM-CGCCACCGGT CGATGTATGT CTTGTTGCAG
ATTGGCG-BHQ1
The direction of all sequences is from left to right 5 ' to 3 ' directions of sequence in the present invention, and above-mentioned HPV16 molecular beacons are visited
Pin shows to be same as above, repeat no more in its 5 ' terminal modified FAM, 3 ' terminal modified BHQ1, the method for being presented below.
QRT-PCR reaction conditions such as table 7:
Table 7
As shown in Figure 2, HPV16 is minimum can detect 1 × 10 for present invention detection2Copies/ μ L, and when HPV16 is positive
Quality-control product is 1 × 109Copies/ μ L to 1 × 102The preferable range of linearity is presented in the range of copies/ μ L.
3 Hela cell HPV18 mRNA are detected
Because Hela cells are the positive cell strains of HPV18 gene integrations, in order to verify the feasible of the primer of design and probe
Property, the HPV18 mRNA in Hela cells are detected.Specific detecting step and result are as follows:
Hela cell culture
Hela cell culture is in DMEM nutrient solutions (100kU/L containing penicillin, the μ of streptomysin 100 containing 10% hyclone
G/m L), 37 DEG C, 5% concentration carbon dioxide, continuously cultivate under conditions of saturated humidity environment.
Hela cell mRNAs are extracted
Extracted using Trizol mRNAs total to Hela cells, it is specific as follows:
(1) Hela cells are put into 1.5mL centrifuge tubes, then add 1mL Trizol, 15-30 DEG C of standing after piping and druming for several times
5min。
(2) 200 μ L chloroforms are added into 1.5mL centrifuge tubes, turn upside down 15-30 DEG C of standing 3-5min for several times.
(3) 4 DEG C, 12000r/min centrifugation 15min, taking-up are placed on ice.
(4) the μ L of upper strata 700 are drawn into new 1.5mL centrifuge tubes, add isometric isopropanol, -20 DEG C of standings are put in mixing
10min。
(5) 4 DEG C, 12000r/min centrifugations 10min abandon supernatant, each centrifuge tube adds the ethanol of 1mL 75%, appropriate to mix.
(6) 7500r/min centrifuges 5min and abandons supernatant, adds 20 μ L DEPC water, and piping and druming is completely dissolved RNA for several times, and -80
DEG C preserve.
Reverse transcription
Reverse transcription system such as table 8:
Table 8
Composition | Volume (μ L) |
Extract total mRNA | 8 |
Reverse transcription premixed liquid | 2 |
Reverse transcription premixed liquid includes 100-300nM dNTP, 5-20U/ μ L reverse transcriptase, the suppression of 0.3-1U/ μ L RNases
Preparation, random primer and poly T primers and 50mM pH8.3 Tris-HCl, 6mM dithiothreitol (DTT)s, 40mM KCl, 0.5mM tri-
Phosphoric acid AZT forms, and wherein random primer is 6 aggressiveness that tetra- kinds of bases of A, G, C, T form at random, and poly T is 18-25
Poly T base compositions.
Reaction condition such as table 9:
Table 9
Temperature (DEG C) | Time (min) |
25 | 10 |
50 | 30 |
85 | 5 |
- 20 DEG C of preservations of reverse transcription product (cDNA).
QRT-PCR detects to HPV18 mRNA cDNA
Reaction system such as table 10:
Table 10
QRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L taq DNA
Polymerase, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl compositions.
Wherein 13 kinds of HPV upstream and downstream primers and probe set sequences are as follows:
HPV16 upstream primer sequences are as follows:CCAGAGACAA CTGATCTCTA CTG
HPV16 downstream primer sequences are as follows:GTCCGGTTCT GCTTGTCC
HPV16 molecular beacon probes are as follows:FAM-CCGCGAGACA GCTCAGAGGA GGAGGATGAA
ATAGTCGCGG-BHQ1
HPV18 upstream primer sequences are as follows:CAACATTTACCAGCCCGAC
HPV18 downstream primer sequences are as follows:GCTGGAATGCTCGAAGG
HPV18 molecular beacon probes are as follows:VIC-CGCGAATGTT GTGTATGTGT TGTAAGTGTG AAGCCATCGC
G-BHQ1
HPV31 upstream primer sequences are as follows:TGTGTACAGA GCACACAAGT AG
HPV31 downstream primer sequences are as follows:TTACAGTCTA GTAGAACAGT TGG
HPV31 molecular beacon probes are as follows:Texas Red-CGCGATGTTA ATGGGCTCAT TTGGAATCGT
GTGTCGCG-Dabycle
HPV33 upstream primer sequences are as follows:AGCAATTAAG TGACAGCTC
HPV33 downstream primer sequences are as follows:CAAGTGTGAC AACAGGTTAC
HPV33 molecular beacon probes are as follows:Cy5-CGCGAGGACC GGCCAGATGG ACAAGTCGCG-BHQ3
HPV35 upstream primer sequences are as follows:ACCCGAGGCA ACTGACCTAT AC
HPV35 downstream primer sequences are as follows:TGTACACACA GACGTAGTGT C
HPV35 molecular beacon probes are as follows:FAM-CGCGAGACAA GCAAAACCAG ACACCTCCAA TTCGCG-
BHQ1
HPV39 upstream primer sequences are as follows:TGAACTACAG CCGGTTGAC
HPV39 downstream primer sequences are as follows:CAGCTGCAGT GTGTTGTTAC
HPV39 molecular beacon probes are as follows:VIC-CCGCGAGAGC AATTAGGAGA GTCAGAGGAT
GAAATCGCGG-BHQ1
HPV45 upstream primer sequences are as follows:CAGAAACCAT TGAACCCAG
HPV45 downstream primer sequences are as follows:TCTTTCTTGC CGTGCCTG
HPV45 molecular beacon probes are as follows:FAM-CGCGAAAAAC GTAGACACCT TAAGGACAAA CGATCGCG-
BHQ1
HPV51 upstream primer sequences are as follows:TGGTAAAAGT ATAGAAGAAC
HPV51 downstream primer sequences are as follows:CGTTCAAAGC TTCACATAAT TC
HPV51 molecular beacon probes are as follows:VIC-CGCGAGAAGA CAAGAGGGAA AGACCACGAT CGCG-BHQ1
HPV52 upstream primer sequences are as follows:AGGATCCAGC AACACGAC
HPV52 downstream primer sequences are as follows:TTTTACACTG CACACACTGC
HPV52 molecular beacon probes are as follows:FAM-CGCGATGAGG TGCTGGAAGA ATCGGTTCGC G-BHQ1
HPV56 upstream primer sequences are as follows:GCCACAGCAA GCTAGACAAG
HPV56 downstream primer sequences are as follows:TAACGCACCC ATAAGCAGC
HPV56 molecular beacon probes are as follows:VIC-CGCGAGTTGT GAGTGTAAGT TTGTGGTGCA
GTTGGTCGCG-BHQ1
HPV58 upstream primer sequences are as follows:AGCAATTATG TGACAGCTCA G
HPV58 downstream primer sequences are as follows:ATACACAAAC GAACCGTGG
HPV58 molecular beacon probes are as follows:FAM-CGCGAGGACG GGCCAGATGG ACAAGTCGCG-BHQ1
HPV59 upstream primer sequences are as follows:TGGCACGCTT TGAGGATC
HPV59 upstream primer sequences are as follows:CTCTTTCTTG CAGTTCCCC
HPV59 molecular beacon probes are as follows:VIC-CGCCAACGAC CATACAAACT GCCTGATTTG AGTGGCG-
BHQ1
HPV68 upstream primer sequences are as follows:TGTATGTCAC GAGCAATTAG G
HPV68 upstream primer sequences are as follows:GTTACACTTA CAACACAGAC AC
HPV68 molecular beacon probes are as follows:FAM-CGCGAATCAC CACCAACATC TACTACTAGC CATCGCG-
BHQ1
QRT-PCR reaction conditions such as table 11:
Table 11
HPV18 is in good amplification curve in Fig. 3, illustrates that kit of the present invention can detect HPV18 in Hela cells
MRNA and with preferably specificity.
5 precision detect
According to above-mentioned HPV16 qRT-PCR reaction systems and reaction condition, HPV16 positive quality control product is taken, repeats to examine
Survey six times.The present invention has preferable precision as shown in Figure 4.
6. clinical sample is analyzed
6.1. the total mRNA extractions of cervical exfoliated cell
Extracted using Trizol mRNAs total to cervical exfoliated cell.Carried out using Trizol mRNAs total to clinical sample
Extraction, it is specific as follows:
(1) clinical sample is put into 1.5mL centrifuge tubes, then adds 1mL Trizol, 15-30 DEG C of standing after piping and druming for several times
5min。
(2) 200 μ L chloroforms are added into 1.5mL centrifuge tubes, turn upside down 15-30 DEG C of standing 3-5min for several times.
(3) 4 DEG C, 12000r/min centrifugation 15min, taking-up are placed on ice.
(4) the μ L of upper strata 700 are drawn into new 1.5mL centrifuge tubes, add isometric isopropanol, -20 DEG C of standings are put in mixing
10min。
(5) 4 DEG C, 12000r/min centrifugations 10min abandon supernatant, each centrifuge tube adds the ethanol of 1mL 75%, appropriate mixed
It is even.
(6) 7500r/min centrifuges 5min and abandons supernatant, adds 20 μ L DEPC water, and piping and druming is completely dissolved RNA for several times, and -80
DEG C preserve.
6.1.2 the total mRNA reverse transcriptions of cervical exfoliated cell are cDNA
It is using the reverse transcription mixed liquor of this kit that the total mRNA reverse transcriptions of the cervical exfoliated cell of extraction is inverse for cDNA.
Transcription system such as table 12:
Table 12
Composition | Volume (μ L) |
Extract total mRNA | 8 |
Reverse transcription premixed liquid | 2 |
Reverse transcription premixed liquid includes 100-300nM dNTP, 5-20U/ μ L reverse transcriptase, the suppression of 0.3-1U/ μ L RNases
Preparation, random primer and poly T primers and 50mM pH8.3 Tris-HCl, 6mM dithiothreitol (DTT)s, 40mM KCl, 0.5mM tri-
Phosphoric acid AZT forms, and wherein random primer is 6 aggressiveness that tetra- kinds of bases of A, G, C, T form at random, and poly T is 18-25
Poly T base compositions.
Reaction condition such as table 13:
Table 13
Temperature (DEG C) | Time (min) |
25 | 10 |
50 | 30 |
85 | 5 |
- 20 DEG C of preservations of reverse transcription product (cDNA).
6.1.3 qRT-PCR carries out qualitative detection to cDNA.
HPV mRNA are entered using the qRT-PCR reaction solutions and qRT-PCR upstream and downstream primer and qRT-PCR of this kit
Row detection
Reaction system such as table 14:
Table 14
QRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L taq DNA
Polymerase, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl compositions.
The upstream and downstream primer and probe groups of 13 kinds of HPV and internal reference are as follows:
HPV16 upstream primer sequences are as follows:CCAGAGACAA CTGATCTCTA CTG
HPV16 downstream primer sequences are as follows:GTCCGGTTCT GCTTGTCC
HPV16 molecular beacon probes are as follows:FAM-CCGCGAGACA GCTCAGAGGA GGAGGATGAA
ATAGTCGCGG-BHQ1
HPV18 upstream primer sequences are as follows:CAACATTTACCAGCCCGAC
HPV18 downstream primer sequences are as follows:GCTGGAATGCTCGAAGG
HPV18 molecular beacon probes are as follows:VIC-CGCGAATGTT GTGTATGTGT TGTAAGTGTG AAGCCATCGC
G-BHQ1
HPV31 upstream primer sequences are as follows:TGTGTACAGA GCACACAAGT AG
HPV31 downstream primer sequences are as follows:TTACAGTCTA GTAGAACAGT TGG
HPV31 molecular beacon probes are as follows:Texas Red-CGCGATGTTA ATGGGCTCAT TTGGAATCGT
GTGTCGCG-Dabycle
HPV33 upstream primer sequences are as follows:AGCAATTAAG TGACAGCTC
HPV33 downstream primer sequences are as follows:CAAGTGTGAC AACAGGTTAC
HPV33 molecular beacon probes are as follows:Cy5-CGCGAGGACC GGCCAGATGG ACAAGTCGCG-BHQ3
HPV35 upstream primer sequences are as follows:ACCCGAGGCA ACTGACCTAT AC
HPV35 downstream primer sequences are as follows:TGTACACACA GACGTAGTGT C
HPV35 molecular beacon probes are as follows:FAM-CGCGAGACAA GCAAAACCAG ACACCTCCAA TTCGCG-
BHQ1
HPV39 upstream primer sequences are as follows:TGAACTACAG CCGGTTGAC
HPV39 downstream primer sequences are as follows:CAGCTGCAGT GTGTTGTTAC
HPV39 molecular beacon probes are as follows:VIC-CCGCGAGAGC AATTAGGAGA GTCAGAGGAT
GAAATCGCGG-BHQ1
HPV45 upstream primer sequences are as follows:CAGAAACCAT TGAACCCAG
HPV45 downstream primer sequences are as follows:TCTTTCTTGC CGTGCCTG
HPV45 molecular beacon probes are as follows:FAM-CGCGAAAAAC GTAGACACCT TAAGGACAAA CGATCGCG-
BHQ1
HPV51 upstream primer sequences are as follows:TGGTAAAAGT ATAGAAGAAC
HPV51 downstream primer sequences are as follows:CGTTCAAAGC TTCACATAAT TC
HPV51 molecular beacon probes are as follows:VIC-CGCGAGAAGA CAAGAGGGAA AGACCACGAT CGCG-BHQ1
HPV52 upstream primer sequences are as follows:AGGATCCAGC AACACGAC
HPV52 downstream primer sequences are as follows:TTTTACACTG CACACACTGC
HPV52 molecular beacon probes are as follows:FAM-CGCGATGAGG TGCTGGAAGA ATCGGTTCGC G-BHQ1
HPV56 upstream primer sequences are as follows:GCCACAGCAA GCTAGACAAG
HPV56 downstream primer sequences are as follows:TAACGCACCC ATAAGCAGC
HPV56 molecular beacon probes are as follows:VIC-CGCGAGTTGT GAGTGTAAGT TTGTGGTGCA
GTTGGTCGCG-BHQ1
HPV58 upstream primer sequences are as follows:AGCAATTATG TGACAGCTCA G
HPV58 downstream primer sequences are as follows:ATACACAAAC GAACCGTGG
HPV58 molecular beacon probes are as follows:FAM-CGCGAGGACG GGCCAGATGG ACAAGTCGCG-BHQ1
HPV59 upstream primer sequences are as follows:TGGCACGCTT TGAGGATC
HPV59 upstream primer sequences are as follows:CTCTTTCTTG CAGTTCCCC
HPV59 molecular beacon probes are as follows:VIC-CGCCAACGAC CATACAAACT GCCTGATTTG AGTGGCG-
BHQ1
HPV68 upstream primer sequences are as follows:TGTATGTCAC GAGCAATTAG G
HPV68 upstream primer sequences are as follows:GTTACACTTA CAACACAGAC AC
HPV68 molecular beacon probes are as follows:FAM-CGCGAATCAC CACCAACATC TACTACTAGC CATCGCG-
BHQ1
β-Actin upstream primer sequences are as follows:AGTGCTGTCT GGCGGC
β-Actin upstream primer sequences are as follows:TCTTCATTGT GCTGGGTGC C
β-Actin molecular beacon probe sequences are as follows:FAM-CGCGAGCCGA CAGGATGCAG AAGGAGATTC GCG-
BHQ1
QRT-PCR reaction conditions such as table 15:
Table 15
Testing result such as table 16:
Table 16
Table 16 shows that the detection method of the present invention is consistent with existing clinical detection result, illustrates the feasible of this method detection
Property.
Sensitivity analysis and clinical detection result with reference to patent of the present invention, the result interpretation method of this kit are as follows:
1. think that the experiment is invalid if reference gene is without amplified production.
2. if reference gene has amplification, the cycle values of target sequence within 30 circulations and have good amplification bent
Line, then it is assumed that amplification is effective.
3. if reference gene has amplification, the cycle values of target sequence in 30-35 circulation and have good amplification curve,
It need to repeat to test, if result is consistent with result of the test above, then it is assumed that amplification is effective.If without amplification, then it is assumed that amplification knot
Fruit is invalid, in the absence of target sequence.
In addition to above-mentioned implementation, the present invention can also have other embodiment.It is all to be formed using equivalent substitution or equivalent transformation
Technical scheme, all fall within the protection domains of application claims.
Sequence table
<110>China Medicine University
<120>For detecting the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7 mRNA partings
<130> 2017
<160> 123
<210> SEQ ID NO:1
<211> 23
<212> DNA
<213>Artificial sequence
<400> 1
AATGTGTGTA CTGCAAGCAA CAG
<210> SEQ ID NO:2
<211> 22
<212> DNA
<213>Artificial sequence
<400> 2
ACAGCATATG GATTCCCATC TC
<210> SEQ ID NO:3
<211> 38
<212> DNA
<213>Artificial sequence
<400> 3
CGCGATGCGA CGTGAGGTAT ATGACTTTGC TTTTCGCG
<210> SEQ ID NO:4
<211> 23
<212> DNA
<213>Artificial sequence
<400> 4
CCAGAGACAA CTGATCTCTA CTG
<210> SEQ ID NO:5
<211> 18
<212> DNA
<213>Artificial sequence
<400> 5
GTCCGGTTCT GCTTGTCC
<210> SEQ ID NO:6
<211> 40
<212> DNA
<213>Artificial sequence
<400> 6
CCGCGA GACAGCTCAGAGGAGGAGGATGAAATAG TCGCGG
<210> SEQ ID NO:7
<211> 21
<212> DNA
<213>Artificial sequence
<400> 7
CACTGTGTCC TGAAGAAAAG C
<210> SEQ ID NO:8
<211> 22
<212> DNA
<213>Artificial sequence
<400> 8
TGGGTTTCTC TACGTGTTCT TG
<210> SEQ ID NO:9
<211> 37
<212> DNA
<213>Artificial sequence
<400> 9
CGCCACCGGT CGATGTATGT CTTGTTGCAG ATTGGCG
<210> SEQ ID NO:10
<211> 22
<212> DNA
<213>Artificial sequence
<400> 10
GAATTGAGCT AGTAGTAGAA AG
<210> SEQ ID NO:11
<211> 20
<212> DNA
<213>Artificial sequence
<400> 11
CGGACACACA AAGGACAGGG
<210> SEQ ID NO:12
<211> 36
<212> DNA
<213>Artificial sequence
<400> 12
CCGCGAGACC TTCGAGCATT CCAGCAGCTG TCGCGG
<210> SEQ ID NO:13
<211> 19
<212> DNA
<213>Artificial sequence
<400> 13
CAACATTTAC CAGCCCGAC
<210> SEQ ID NO:14
<211> 17
<212> DNA
<213>Artificial sequence
<400> 14
GCTGGAATGC TCGAAGG
<210> SEQ ID NO:15
<211> 41
<212> DNA
<213>Artificial sequence
<400> 15
CGCGAATGTT GTGTATGTGT TGTAAGTGTG AAGCCATCGC G
<210> SEQ ID NO:16
<211> 21
<212> DNA
<213>Artificial sequence
<400> 16
GGTGCCAGAA ACCGTTGAAT C
<210> SEQ ID NO:17
<211> 20
<212> DNA
<213>Artificial sequence
<400> 17
GTGTTTCTCT GCGTCGTTGG
<210> SEQ ID NO:18
<211> 36
<212> DNA
<213>Artificial sequence
<400> 18
CGCGACACAA CATAGCTGGG CACTATAGAG GTCGCG
<210> SEQ ID NO:19
<211> 22
<212> DNA
<213>Artificial sequence
<400> 19
TGTGTACAGA GCACACAAGT AG
<210> SEQ ID NO:20
<211> 23
<212> DNA
<213>Artificial sequence
<400> 20
TTACAGTCTA GTAGAACAGT TGG
<210> SEQ ID NO:21
<211> 38
<212> DNA
<213>Artificial sequence
<400> 21
CGCGATGTTA ATGGGCTCAT TTGGAATCGT GTGTCGCG
<210> SEQ ID NO:22
<211> 21
<212> DNA
<213>Artificial sequence
<400> 22
GTGTCAAAGA CCGTTGTGTC C
<210> SEQ ID NO:23
<211> 22
<212> DNA
<213>Artificial sequence
<400> 23
ACACTTGGGT TTCAGTACGA GG
<210> SEQ ID NO:24
<211> 38
<212> DNA
<213>Artificial sequence
<400> 24
CGCCAACAAC ATAGGAGGAA GGTGGACAGG ACGTGGCG
<210> SEQ ID NO:25
<211> 21
<212> DNA
<213>Artificial sequence
<400> 25
CATGAACTAA GCTCGGCATT G
<210> SEQ ID NO:26
<211> 22
<212> DNA
<213>Artificial sequence
<400> 26
ACCTCTGTTT CTGTTAACTG AC
<210> SEQ ID NO:27
<211> 44
<212> DNA
<213>Artificial sequence
<400> 27
CCGCCACCCT ACGATGAACT AAGATTGAAT TGTGTCTACG GCGG
<210> SEQ ID NO:28
<211> 19
<212> DNA
<213>Artificial sequence
<400> 28
AGCAATTAAG TGACAGCTC
<210> SEQ ID NO:29
<211> 20
<212> DNA
<213>Artificial sequence
<400> 29
CAAGTGTGAC AACAGGTTAC
<210> SEQ ID NO:30
<211> 30
<212> DNA
<213>Artificial sequence
<400> 30
CGCGAGGACC GGCCAGATGG ACAAGTCGCG
<210> SEQ ID NO:31
<211> 25
<212> DNA
<213>Artificial sequence
<400> 31
CCAACGTTAA AGGAATATGT TTTAG
<210> SEQ ID NO:32
<211> 20
<212> DNA
<213>Artificial sequence
<400> 32
CTGAGCTGTC ACTTAATTGC
<210> SEQ ID NO:33
<211> 35
<212> DNA
<213>Artificial sequence
<400> 33
CGCGATCCTG AACCAACTGA CCTATACTGC TCGCG
<210> SEQ ID NO:34
<211> 22
<212> DNA
<213>Artificial sequence
<400> 34
GGACACAAGC CAACGTTAAA GG
<210> SEQ ID NO:35
<211> 19
<212> DNA
<213>Artificial sequence
<400> 35
GTGGCTGGTT GTGCTTGTC
<210> SEQ ID NO:36
<211> 34
<212> DNA
<213>Artificial sequence
<400> 36
CGCGAGATGA GGATGAAGGC TTGGACCGGT CGCG
<210> SEQ ID NO:37
<211> 21
<212> DNA
<213>Artificial sequence
<400> 37
CCGCTGTGTC CAGTTGAAAA G
<210> SEQ ID NO:38
<211> 21
<212> DNA
<213>Artificial sequence
<400> 38
ACACCTCGGT TTCTCTACGT G
<210> SEQ ID NO:39
<211> 36
<212> DNA
<213>Artificial sequence
<400> 39
CGCGAGTGGA CGGTGGACAG GTCGGTGTAT GTCGCG
<210> SEQ ID NO:40
<211> 22
<212> DNA
<213>Artificial sequence
<400> 40
ACCCGAGGCA ACTGACCTAT AC
<210> SEQ ID NO:41
<211> 21
<212> DNA
<213>Artificial sequence
<400> 41
TGTACACACA GACGTAGTGT C
<210> SEQ ID NO:42
<211> 36
<212> DNA
<213>Artificial sequence
<400> 42
CGCGAGACAA GCAAAACCAG ACACCTCCAA TTCGCG
<210> SEQ ID NO:43
<211> 19
<212> DNA
<213>Artificial sequence
<400> 43
GACAAGCAAA ACCAGACAC
<210> SEQ ID NO:44
<211> 20
<212> DNA
<213>Artificial sequence
<400> 44
GGGGCACACT ATTCCAAATG
<210> SEQ ID NO:45
<211> 37
<212> DNA
<213>Artificial sequence
<400> 45
CGCGATGTAA CGTCCTGTTG TAAATGTGAG GCTCGCG
<210> SEQ ID NO:46
<211> 19
<212> DNA
<213>Artificial sequence
<400> 46
TGAACTACAG CCGGTTGAC
<210> SEQ ID NO:47
<211> 20
<212> DNA
<213>Artificial sequence
<400> 47
CAGCTGCAGT GTGTTGTTAC
<210> SEQ ID NO:48
<211> 40
<212> DNA
<213>Artificial sequence
<400> 48
CCGCGAGAGC AATTAGGAGA GTCAGAGGAT GAAATCGCGG
<210> SEQ ID NO:49
<211> 19
<212> DNA
<213>Artificial sequence
<400> 49
ACGAGCAATT AGGAGAGTC
<210> SEQ ID NO:50
<211> 19
<212> DNA
<213>Artificial sequence
<400> 50
TGTATTGTGT GACGCTGTG
<210> SEQ ID NO:51
<211> 39
<212> DNA
<213>Artificial sequence
<400> 51
CCGCGAAATCA CCAACATCAA CTACTAGCCA GACTCGCGG
<210> SEQ ID NO:52
<211> 20
<212> DNA
<213>Artificial sequence
<400> 52
TACTCGGACT CGGTGTATGC
<210> SEQ ID NO:53
<211> 23
<212> DNA
<213>Artificial sequence
<400> 53
TCTTCGTTTG CTATTTAGGT GTC
<210> SEQ ID NO:54
<211> 38
<212> DNA
<213>Artificial sequence
<400> 54
CGCGAATAAG GTGCATGTGT TGTCTGAAAC CGCTCGCG
<210> SEQ ID NO:55
<211> 19
<212> DNA
<213>Artificial sequence
<400> 55
CAGAAACCAT TGAACCCAG
<210> SEQ ID NO:56
<211> 18
<212> DNA
<213>Artificial sequence
<400> 56
TCTTTCTTGC CGTGCCTG
<210> SEQ ID NO:57
<211> 38
<212> DNA
<213>Artificial sequence
<400> 57
CGCGAAAAAC GTAGACACCT TAAGGACAAA CGATCGCG
<210> SEQ ID NO:58
<211> 20
<212> DNA
<213>Artificial sequence
<400> 58
TGACCTGTTG TGTTACGAGC
<210> SEQ ID NO:59
<211> 20
<212> DNA
<213>Artificial sequence
<400> 59
TTTTGTGACG CTGTGGTTCG
<210> SEQ ID NO:60
<211> 37
<212> DNA
<213>Artificial sequence
<400> 60
CGCGAAGAGG AGGAAAACGA TGAAGCAGAT GGTCGCG
<210> SEQ ID NO:61
<211> 22
<212> DNA
<213>Artificial sequence
<400> 61
TGTTGTGTTA CGAGCAATTA AG
<210> SEQ ID NO:62
<211> 19
<212> DNA
<213>Artificial sequence
<400> 62
CATCTGCCGA GCTCTCTAC
<210> SEQ ID NO:63
<211> 30
<212> DNA
<213>Artificial sequence
<400> 63
CGCGATGCAC AACTACCAGC CCGACTCGCG
<210> SEQ ID NO:64
<211> 20
<212> DNA
<213>Artificial sequence
<400> 64
TGGTAAAAGT ATAGAAGAAC
<210> SEQ ID NO:65
<211> 22
<212> DNA
<213>Artificial sequence
<400> 65
CGTTCAAAGC TTCACATAAT TC
<210> SEQ ID NO:66
<211> 34
<212> DNA
<213>Artificial sequence
<400> 66
CGCGAGAAGA CAAGAGGGAA AGACCACGAT CGCG
<210> SEQ ID NO:67
<211> 20
<212> DNA
<213>Artificial sequence
<400> 67
GGCTACGTGT TACAGAATTG
<210> SEQ ID NO:68
<211> 20
<212> DNA
<213>Artificial sequence
<400> 68
CCCATTAACA TCTGCTGTAC
<210> SEQ ID NO:69
<211> 30
<212> DNA
<213>Artificial sequence
<400> 69
CGCCAGGCAG TGGAAAGCAG TGGAGTCGCG
<210> SEQ ID NO:70
<211> 21
<212> DNA
<213>Artificial sequence
<400> 70
ATATGCGTGA CCAGCTACCA G
<210> SEQ ID NO:71
<211> 21
<212> DNA
<213>Artificial sequence
<400> 71
AAGGGTGTCT CCACTGCTTT C
<210> SEQ ID NO:72
<211> 33
<212> DNA
<213>Artificial sequence
<400> 72
CGCGTTGAAG CTCCGTGTTG CAGGTGTTAC GCG
<210> SEQ ID NO:73
<211> 22
<212> DNA
<213>Artificial sequence
<400> 73
ACAACTGACC TACACTGCTA TG
<210> SEQ ID NO:74
<211> 20
<212> DNA
<213>Artificial sequence
<400> 74
TTGCTTGTGG CTTGTTCTGC
<210> SEQ ID NO:75
<211> 38
<212> DNA
<213>Artificial sequence
<400> 75
CCGCGATAGG TGACAGCTCA GATGAGGAGG ATTCGCGG
<210> SEQ ID NO:76
<211> 18
<212> DNA
<213>Artificial sequence
<400> 76
AGGATCCAGC AACACGAC
<210> SEQ ID NO:77
<211> 20
<212> DNA
<213>Artificial sequence
<400> 77
TTTTACACTG CACACACTGC
<210> SEQ ID NO:78
<211> 31
<212> DNA
<213>Artificial sequence
<400> 78
CGCGATGAGG TGCTGGAAGA ATCGGTTCGC G
<210> SEQ ID NO:79
<211> 22
<212> DNA
<213>Artificial sequence
<400> 79
GGGAAAACAT TAGAAGAGAG GG
<210> SEQ ID NO:80
<211> 21
<212> DNA
<213>Artificial sequence
<400> 80
CTACACTTGG GTCACAGGTC G
<210> SEQ ID NO:81
<211> 32
<212> DNA
<213>Artificial sequence
<400> 81
CGCGAAGGGC GCTGTTCAGA GTGTTGGTCG CG
<210> SEQ ID NO:82
<211> 22
<212> DNA
<213>Artificial sequence
<400> 82
ATGACTATTC AGTGTATGGA GC
<210> SEQ ID NO:83
<211> 22
<212> DNA
<213>Artificial sequence
<400> 83
CTAGGTTCTC TAGATGTTTG TC
<210> SEQ ID NO:84
<211> 30
<212> DNA
<213>Artificial sequence
<400> 84
CGCGAGGTCA TGTTTGGGGT GCTGGTCGCG
<210> SEQ ID NO:85
<211> 20
<212> DNA
<213>Artificial sequence
<400> 85
GCCACAGCAA GCTAGACAAG
<210> SEQ ID NO:86
<211> 19
<212> DNA
<213>Artificial sequence
<400> 86
TAACGCACCC ATAAGCAGC
<210> SEQ ID NO:87
<211> 40
<212> DNA
<213>Artificial sequence
<400> 87
CGCGAGTTGT GAGTGTAAGT TTGTGGTGCA GTTGGTCGCG
<210> SEQ ID NO:88
<211> 20
<212> DNA
<213>Artificial sequence
<400> 88
TACACGTACC TTGTTGTGAG
<210> SEQ ID NO:89
<211> 19
<212> DNA
<213>Artificial sequence
<400> 89
TGTTAACGCA CCCATAAGC
<210> SEQ ID NO:90
<211> 33
<212> DNA
<213>Artificial sequence
<400> 90
CGCGAGTGGT GCAGTTGGAC ATTCAGAGTC GCG
<210> SEQ ID NO:91
<211> 21
<212> DNA
<213>Artificial sequence
<400> 91
AGCAATTATG TGACAGCTCA G
<210> SEQ ID NO:92
<211> 19
<212> DNA
<213>Artificial sequence
<400> 92
ATACACAAAC GAACCGTGG
<210> SEQ ID NO:93
<211> 30
<212> DNA
<213>Artificial sequence
<400> 93
CGCGAGGACG GGCCAGATGG ACAAGTCGCG
<210> SEQ ID NO:94
<211> 22
<212> DNA
<213>Artificial sequence
<400> 94
GATTTACATC CTGAACCAAC TG
<210> SEQ ID NO:95
<211> 22
<212> DNA
<213>Artificial sequence
<400> 95
CAATGTAGTA ATTAGCTGTG GC
<210> SEQ ID NO:96
<211> 34
<212> DNA
<213>Artificial sequence
<400> 96
CGCGAGAGGA TGAAATAGGC TTGGACGGGT CGCG
<210> SEQ ID NO:97
<211> 18
<212> DNA
<213>Artificial sequence
<400> 97
AGAGGAGAAA CCACGGAC
<210> SEQ ID NO:98
<211> 21
<212> DNA
<213>Artificial sequence
<400> 98
ATACCTCAGA TCGCTGCAAA G
<210> SEQ ID NO:99
<211> 32
<212> DNA
<213>Artificial sequence
<400> 99
CGCGAGATTT GTGTCAGGCG TTGGAGATCG CG
<210> SEQ ID NO:100
<211> 33
<212> DNA
<213>Artificial sequence
<400> 100
TACACAACGA CCATACAAAC TGC
<210> SEQ ID NO:101
<211> 22
<212> DNA
<213>Artificial sequence
<400> 101
GCTGCATACG GTGTACAGTC TC
<210> SEQ ID NO:102
<211> 39
<212> DNA
<213>Artificial sequence
<400> 102
CGCCAGCAAA GGGGAACTGC AAGAAAGAGA GGTATGGCG
<210> SEQ ID NO:103
<211> 18
<212> DNA
<213>Artificial sequence
<400> 103
TGGCACGCTT TGAGGATC
<210> SEQ ID NO:104
<211> 19
<212> DNA
<213>Artificial sequence
<400> 104
CTCTTTCTTG CAGTTCCCC
<210> SEQ ID NO:105
<211> 37
<212> DNA
<213>Artificial sequence
<400> 105
CGCCAACGAC CATACAAACT GCCTGATTTG AGTGGCG
<210> SEQ ID NO:106
<211> 22
<212> DNA
<213>Artificial sequence
<400> 106
TATTCCTCTG CATGATATTC GC
<210> SEQ ID NO:107
<211> 20
<212> DNA
<213>Artificial sequence
<400> 107
TTTCAGACAC GCTGCATACG
<210> SEQ ID NO:108
<211> 40
<212> DNA
<213>Artificial sequence
<400> 108
CCGCGACAAA GGGGAACTGC AAGAAAGAGA GGTATCGCGG
<210> SEQ ID NO:109
<211> 22
<212> DNA
<213>Artificial sequence
<400> 109
TATGAATTTG CCTTTAGTGA CC
<210> SEQ ID NO:110
<211> 22
<212> DNA
<213>Artificial sequence
<400> 110
ATCGTAGTTC CCGTATTTTA GC
<210> SEQ ID NO:111
<211> 38
<212> DNA
<213>Artificial sequence
<400> 111
CGCGATAGTG TATAGAGACG GGGTACCATT TGCTCGCG
<210> SEQ ID NO:112
<211> 22
<212> DNA
<213>Artificial sequence
<400> 112
ATTGGACACT ACATTGCATG AC
<210> SEQ ID NO:113
<211> 19
<212> DNA
<213>Artificial sequence
<400> 113
TGGTACCCCG TCTCTATAC
<210> SEQ ID NO:114
<211> 40
<212> DNA
<213>Artificial sequence
<400> 114
CGCGAACTAC AACGGACAGA GGTATATGAA TTTGCTCGCG
<210> SEQ ID NO:115
<211> 21
<212> DNA
<213>Artificial sequence
<400> 115
TGTATGTCAC GAGCAATTAG G
<210> SEQ ID NO:116
<211> 22
<212> DNA
<213>Artificial sequence
<400> 116
GTTACACTTA CAACACAGAC AC
<210> SEQ ID NO:117
<211> 37
<212> DNA
<213>Artificial sequence
<400> 117
CGCGAATCAC CACCAACATC TACTACTAGC CATCGCG
<210> SEQ ID NO:118
<211> 16
<212> DNA
<213>Artificial sequence
<400> 118
AGTGCTGTCT GGCGGC
<210> SEQ ID NO:119
<211> 20
<212> DNA
<213>Artificial sequence
<400> 119
TCTTCATTGT GCTGGGTGCC
<210> SEQ ID NO:120
<211> 33
<212> DNA
<213>Artificial sequence
<400> 120
CGCGAGCCGA CAGGATGCAG AAGGAGATTC GCG
<210> SEQ ID NO:121
<211> 776
<212> DNA
<213>Artificial sequence
<400> 121
ATGCACCAAA AGAGAACTGC AATGTTTCAG GACCCACAGG AGCGACCCAG AAAGTTACCA
CAGTTATGCA CAGAGCTGCA AACAACTATA CATGATATAA TATTAGAATG TGTGTACTGC AAGCAACAGT
TACTGCGACG TGAGGTATAT GACTTTGCTT TTCGGGATTT ATGCATAGTA TATAGAGATG GGAATCCATA
TGCTGTATGT GATAAATGTT TAAAGTTTTA TTCTAAAATT AGTGAGTATA GACATTATTG TTATAGTTTG
TATGGAACAA CATTAGAACA GCAATACAAC AAACCGTTGT GTGATTTGTT AATTAGGTGT ATTAACTGTC
AAAAGCCACT GTGTCCTGAA GAAAAGCAAA GACATCTGGA CAAAAAGCAA AGATTCCATA ATATAAGGGG
TCGGTGGACC GGTCGATGTA TGTCTTGTTG CAGATCATCA AGAACACGTA GAGAAACCCA GCTGTAATCA
TGCATGGAGA TACACCTACA TTGCATGAAT ATATGTTAGA TTTGCAACCA GAGACAACTG ATCTCTACTG
TTATGAGCAA TTAAATGACA GCTCAGAGGA GGAGGATGAA ATAGATGGTC CAGCTGGACA AGCAGAACCG
GACAGAGCCC ATTACAATAT TGTAACCTTT TGTTGCAAGT GTGACTCTAC GCTTCGGTTG TGCGTACAAA
GCACACACGT AGACATTCGT ACTTTGGAAG ACCTGTTAAT GGGCACACTA GGAATTGTGT GCCCCATCTG
TTCTCAGAAA CCATAA
<210> SEQ ID NO:122
<211> 40
<212> DNA
<213>Artificial sequence
<400> 122
TAATACGACT CACTATAGGG ATGCACCAAA AGAGAACTGC
<210> SEQ ID NO:123
<211> 19
<212> DNA
<213>Artificial sequence
<400> 123
CTGAGAACAG ATGGGGCAC
Claims (10)
1. primer and probe groups for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, it is characterised in that
The primer and probe groups include 13 kinds of high-risk HPVs and internal reference β-Actin upstream and downstream primer and probe groups:
HPV16 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.1 in list, the SEQ ID NO.2 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.3;Second group, the SEQ ID NO.4 in sense primer such as sequence table, the SEQ ID NO.5 in anti-sense primer such as sequence table,
SEQ ID NO.6 in probe such as sequence table;3rd group, the SEQ ID NO.7 in sense primer such as sequence table, anti-sense primer is such as
SEQ ID NO.8 in sequence table, the SEQ ID NO.9 in probe such as sequence table;
HPV18 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.10 in list, the SEQ ID NO.11 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.12;Second group, the SEQ ID NO.13 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.15 in NO.14, probe such as sequence table;3rd group, the SEQ ID NO.16 in sense primer such as sequence table, under
Swim the SEQ ID NO.17 in primer such as sequence table, the SEQ ID NO.18 in probe such as sequence table;
HPV31 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.19 in list, the SEQ ID NO.20 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.21;Second group, the SEQ ID NO.22 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.24 in NO.23, probe such as sequence table;3rd group, the SEQ ID NO.25 in sense primer such as sequence table, under
Swim the SEQ ID NO.26 in primer such as sequence table, the SEQ ID NO.27 in probe such as sequence table;
HPV33 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.28 in list, the SEQ ID NO.29 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.30;Second group, the SEQ ID NO.31 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.33 in NO.32, probe such as sequence table;3rd group, the SEQ ID NO.34 in sense primer such as sequence table, under
Swim the SEQ ID NO.35 in primer such as sequence table, the SEQ ID NO.36 in probe such as sequence table;
HPV35 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.37 in list, the SEQ ID NO.38 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.39;Second group, the SEQ ID NO.40 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.42 in NO.41, probe such as sequence table;3rd group, the SEQ ID NO.43 in sense primer such as sequence table, under
Swim the SEQ ID NO.44 in primer such as sequence table, the SEQ ID NO.45 in probe such as sequence table;
HPV39 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.46 in list, the SEQ ID NO.47 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.48;Second group, the SEQ ID NO.49 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.51 in NO.50, probe such as sequence table;3rd group, the SEQ ID NO.52 in sense primer such as sequence table, under
Swim the SEQ ID NO.53 in primer such as sequence table, the SEQ ID NO.54 in probe such as sequence table;
HPV45 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.55 in list, the SEQ ID NO.56 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.57;Second group, the SEQ ID NO.58 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.60 in NO.59, probe such as sequence table;3rd group, the SEQ ID NO.61 in sense primer such as sequence table, under
Swim the SEQ ID NO.62 in primer such as sequence table, the SEQ ID NO.63 in probe such as sequence table;
HPV51 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.64 in list, the SEQ ID NO.65 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.66;Second group, the SEQ ID NO.67 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.69 in NO.68, probe such as sequence table;3rd group, the SEQ ID NO.70 in sense primer such as sequence table, under
Swim the SEQ ID NO.71 in primer such as sequence table, the SEQ ID NO.72 in probe such as sequence table;
HPV52 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.73 in list, the SEQ ID NO.74 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.75;Second group, the SEQ ID NO.76 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.78 in NO.77, probe such as sequence table;3rd group, the SEQ ID NO.79 in sense primer such as sequence table, under
Swim the SEQ ID NO.80 in primer such as sequence table, the SEQ ID NO.81 in probe such as sequence table;
HPV56 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.82 in list, the SEQ ID NO.83 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.84;Second group, the SEQ ID NO.85 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.87 in NO.86, probe such as sequence table;3rd group, the SEQ ID NO.88 in sense primer such as sequence table, under
Swim the SEQ ID NO.89 in primer such as sequence table, the SEQ ID NO.90 in probe such as sequence table;
HPV58 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.91 in list, the SEQ ID NO.92 in anti-sense primer such as sequence table, the SEQ ID in probe such as sequence table
NO.93;Second group, the SEQ ID NO.94 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.96 in NO.95, probe such as sequence table;3rd group, the SEQ ID NO.97 in sense primer such as sequence table, under
Swim the SEQ ID NO.98 in primer such as sequence table, the SEQ ID NO.99 in probe such as sequence table;
HPV59 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.100 in list, the SEQ ID NO.101 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.102;Second group, the SEQ ID NO.103 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.105 in NO.104, probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.107 in NO.106, anti-sense primer such as sequence table, the SEQ ID NO.108 in probe such as sequence table;
HPV68 upstream and downstream primer and probe can be following three groups in any group, specific first group, sense primer such as sequence
SEQ ID NO.109 in list, the SEQ ID NO.110 in anti-sense primer such as sequence table, the SEQ in probe such as sequence table
ID NO.111;Second group, the SEQ ID NO.112 in sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.114 in NO.113, probe such as sequence table;3rd group, the SEQ ID in sense primer such as sequence table
SEQ ID NO.116 in NO.115, anti-sense primer such as sequence table, the SEQ ID NO.117 in probe such as sequence table;
SEQ ID NO.118 in β-Actin sense primer such as sequence table, the SEQ ID in anti-sense primer such as sequence table
SEQ ID NO.120 in NO.119, probe such as sequence table.
2. it is used for the primer and probe groups for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings according to claim 1,
It is characterized in that:The probe groups also include the reverse complementary sequence in all molecular beacon probe areas.
3. for detecting high-risk human mammilla papillomavirus E6/E7mRNA and the kit of parting, it is characterised in that:The kit
Contain the μ L of reverse transcription premixed liquid 300;QRT-PCR premixed liquids 1.6mL;13 kinds of high-risk HPVs and internal reference β-Actin upstream and downstream are drawn
Thing and probe groups, each of which HPV hypotypes and internal reference β-Actin upstream and downstream primer are 10 μ Μ, 160 μ L, every HPV sub-
Type and internal reference β-Actin molecular beacon probe are 10 μ Μ, 100 μ L;The μ L of strong positive quality-control product 500;Weakly positive quality-control product
The 500 μ L and μ L of negative controls 500.
4. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 3
It is:The reverse transcription premixed liquid includes 100-300nM dNTP, 5-20U/ μ L reverse transcriptase, the suppression of 0.3-1U/ μ L RNases
Preparation, random primer and poly T primers and 50mM pH8.3 Tris-HCl, 6mM dithiothreitol (DTT)s, 40mM KCl, 0.5mM tri-
Phosphoric acid AZT forms, and wherein random primer is 6 aggressiveness that tetra- kinds of bases of A, G, C, T form at random, and poly T is 18-25
Poly T base compositions.
5. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 3
It is:The qRT-PCR premixed liquids by 200-500nM dNTP, 2-10mM Mg2+, concentration be 0.1-0.5U/ μ L taq
Archaeal dna polymerase, concentration be 0.01-0.02U/ μ L UNG enzymes, 20mM pH8.3 Tris-Hcl and 100mM KCl compositions.
6. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 3
It is:The kit can be by HPV16 primed probes group, HPV18 primed probes group, β-Actin primed probes groups and zero to ten
A kind of other high-risk HPVs (HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV56, HPV58,
HPV59, HPV68) composition.
7. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 3
It is:The fluorophor of the 5' ends mark of the molecular beacon is any of organic fluorescent dye or inorganic dyestuff, 3' ends
Quencher is marked as nano-particles such as any or gold nanos of organic dyestuff.
8. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 7
It is:The organic fluorescent dye is FAM, VIC, HEX, TRT, Cy3, Cy5, ROX and JOE, and the inorganic dyestuff is quantum dot,
The organic dyestuff is TAMRA, DABCYL, MGB, BHQ-1, BHQ-2 and BHQ-3.
9. it is used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings, its feature according to claim 3
It is:Positive quality control product is the plasmid by the high-risk HPV DNA fragmentation in acknowledged detection range containing kit is sequenced
The mRNA or its complementary series that in-vitro transcription goes out, the wherein concentration of strong positive quality-control product are 1 × 107Copies/ μ L, weakly positive
The concentration of quality-control product is 1 × 103copies/μL。
10. being used for the kit for detecting high-risk human mammilla papillomavirus E6/E7mRNA partings according to claim 3, it is special
Sign is:The negative controls are the water of DEPC processing.
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Cited By (5)
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CN108929869A (en) * | 2018-08-09 | 2018-12-04 | 亚能生物技术(深圳)有限公司 | Preparation method, amplimer and the detection reagent of HPV full-length genome quality-control product |
CN109234455A (en) * | 2018-10-10 | 2019-01-18 | 上海裕隆神光医学检验实验室有限公司 | The DNA typing detection kit of human papilloma virus |
CN110938712A (en) * | 2019-12-27 | 2020-03-31 | 苏州药明检测检验有限责任公司 | Primer, probe, kit and method for detecting human papilloma virus based on real-time fluorescent quantitative PCR technology |
CN113637800A (en) * | 2021-08-19 | 2021-11-12 | 深圳源兴基因技术有限公司 | HPV18 virus E6 and E7 gene detection primer, probe composition and detection kit |
CN117126966A (en) * | 2023-09-01 | 2023-11-28 | 弗雷米德生物医药技术(天津)有限公司 | Kit based on HPV mRNA expression quantity and application |
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CN106834547A (en) * | 2017-03-27 | 2017-06-13 | 杭州迪安生物技术有限公司 | A kind of kit for human papilloma virus E6/E7 genetic tests and its application based on real-time isothermal duplication |
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CN108929869A (en) * | 2018-08-09 | 2018-12-04 | 亚能生物技术(深圳)有限公司 | Preparation method, amplimer and the detection reagent of HPV full-length genome quality-control product |
CN108929869B (en) * | 2018-08-09 | 2022-03-08 | 亚能生物技术(深圳)有限公司 | Preparation method of HPV full-length genome quality control product, amplification primer and detection reagent |
CN109234455A (en) * | 2018-10-10 | 2019-01-18 | 上海裕隆神光医学检验实验室有限公司 | The DNA typing detection kit of human papilloma virus |
CN110938712A (en) * | 2019-12-27 | 2020-03-31 | 苏州药明检测检验有限责任公司 | Primer, probe, kit and method for detecting human papilloma virus based on real-time fluorescent quantitative PCR technology |
CN113637800A (en) * | 2021-08-19 | 2021-11-12 | 深圳源兴基因技术有限公司 | HPV18 virus E6 and E7 gene detection primer, probe composition and detection kit |
CN117126966A (en) * | 2023-09-01 | 2023-11-28 | 弗雷米德生物医药技术(天津)有限公司 | Kit based on HPV mRNA expression quantity and application |
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