CN105566443B - Make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals - Google Patents

Make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals Download PDF

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CN105566443B
CN105566443B CN201610004553.3A CN201610004553A CN105566443B CN 105566443 B CN105566443 B CN 105566443B CN 201610004553 A CN201610004553 A CN 201610004553A CN 105566443 B CN105566443 B CN 105566443B
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crystallization
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seed crystal
solution
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CN105566443A (en
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尹大川
闫二开
张辰艳
刘雅丽
周仁斌
陈达
刘悦
李嘉欣
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Northwestern Polytechnical University
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    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K1/00General methods for the preparation of peptides, i.e. processes for the organic chemical preparation of peptides or proteins of any length
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    • C07K1/30Extraction; Separation; Purification by precipitation
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    • C12N9/0065Oxidoreductases (1.) acting on hydrogen peroxide as acceptor (1.11)
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    • C12N9/24Hydrolases (3) acting on glycosyl compounds (3.2)
    • C12N9/2402Hydrolases (3) acting on glycosyl compounds (3.2) hydrolysing O- and S- glycosyl compounds (3.2.1)
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    • C12N9/48Hydrolases (3) acting on peptide bonds (3.4)
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    • C12Y304/00Hydrolases acting on peptide bonds, i.e. peptidases (3.4)
    • C12Y304/21Serine endopeptidases (3.4.21)
    • C12Y304/21001Chymotrypsin (3.4.21.1)

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Abstract

Make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals the present invention provides a kind of, protein crystal is grown first, and protein crystal is chemically crosslinked, obtained crosslinked protein crystals are dissolved in ultrapure water, seed crystal solution is made;Then seed crystal solution is instilled to the sitting drop hole of crystallization plates, naturally dry crystallization plates;Crystallization condition screening finally is carried out to protein using screening reagent box, using the pattern of auto-phot system view protein crystal, and counts the crystallization condition number of protein crystal;Simultaneously diffraction protein crystal is collected, diffraction data is obtained.The present invention chooses crosslinked protein crystals as seed crystal, stable in the air can exist, and is conducive to long-term storage, and can reuse;The present invention can effectively improve the success rate of protein crystallization condition screening.

Description

Make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals
Technical field
The present invention relates to a kind of methods that raising protein crystallization screening hanks power.
Background technique
Protein is the carrier of vital movement, and protein structure is the important prerequisite for determining its physiological function.Currently, obtaining The monocrystalline of high quality is the key that the bottleneck using x-ray diffraction technique parsing protein fine three dimensional structure and this technology Problem.The crystallization condition for how screening to obtain protein is the first step for obtaining high quality protein matter monocrystalline, however, from high-purity egg White matter to obtain diffraction quality protein crystal success rate less than 20%, therefore, improve protein crystal crystallization success Rate is extremely urgent.
There are many kinds of the methods that power is hanked for improving protein crystallization screening, including cocrystallization, improvement interface, control change Warm mode, seed-grain method etc..Document 1: " An automated microseed matrix-screening method for protein crystallization[J].Acta Crystallographica Section D,2007,63(4):550- 554. ", which report seed-grain method, can make the crystallization success rate of protein improve 2.5~65 times;Document 2: " Microseed matrix screening to improve crystals of yeast cytosine deaminase[J].Acta Crystallographica Section D, 2004,60 (3): 601-605 " reports the protein crystal using low resolution As the crystallization condition of seed crystal optimization protein, high-resolution protein crystal can be obtained, and then obtains diffraction data.So And the seed crystal of this method preparation is dissolved in water and organic solvent, is used only once, it is expensive.
Summary of the invention
For overcome the deficiencies in the prior art, the present invention provide it is a kind of utilize crosslinking protein crystal be used for as seed crystal The method of crystallization of protein is crosslinked using the protein crystal that crosslinking agent prepares conventional method, and obtaining can be steady in air Fixed existing crosslinked protein crystals.Then using crosslinked protein crystals as seed crystal, protein knot can be effectively improved The success rate of brilliant conditional filtering.
The technical solution adopted by the present invention to solve the technical problems is: it is molten to prepare crosslinked protein crystals seed crystal first Then liquid seed crystal solution is added dropwise on crystallization plates, finally carry out the screening of crystallization of protein success rate.Specific step is as follows:
The first step grows protein crystal, and is chemically crosslinked to protein crystal, by obtained cross-linked proteins crystalline substance Body is dissolved in ultrapure water, and concentration is 5-20mg/ml, and seed crystal solution is made;
Second step instills the seed crystal solution of 0.5-2 μ l, naturally dry crystallization plates in each sitting drop hole of crystallization plates;
Third step utilizes IndexTMScreening reagent box carries out crystallization condition screening to protein, and it is molten to prepare protein first Liquid;Then the pond liquid of 80 μ l is added into each deep hole of crystallization plates, crystallizing agent and protein solution will be screened according to the matter of 1:1 Amount ratio is mixed to get crystallization solution, and the crystallization drop of 2 μ l is instilled to the sitting drop hole of crystallization plates, seals crystallization plates, and in 277- It is crystallized 3-7 days under the crystallization temperature of 293K;
4th step, the pattern of view protein crystal count the crystallization condition number of protein crystal;Collect simultaneously diffraction albumen Matter crystal obtains diffraction data.
The seed crystal solution selects crosslinking lysozyme as seed crystal.
The seed crystal solution selects the crosslinking lysozyme that mass ratio is 1:1 and hydrogen peroxide enzyme crystal as seed crystal.
It is crosslinking lysozyme crystal, catalase, the protein of 1:1:1:1:1 that the seed crystal solution, which selects mass ratio, Enzyme K, thaumatin matter and chymotrypsinogen A II crystal are as seed crystal.
Crystalline mother solution is all replaced as crosslinker solution during the chemical crosslinking.
The beneficial effects of the present invention are:
1, the present invention chooses crosslinked protein crystals as seed crystal, stable in the air can exist, and is conducive to long-term storage, And it can reuse;
2, the bigger crosslinked protein crystals of combined use molecular weight and differences between lattice constant of the invention are covered as seed crystal The molecular weight and lattice constant of most of crystallizable protein have been covered, good inducing action can be played to crystallization of protein, A possibility that increasing crystallization of protein;
3, the present invention can provide a kind of effective method to improve the success rate of crystallization of protein screening.
Specific embodiment
Below with reference to embodiment, the present invention is further described, and the invention includes, but is not limited to, the following examples.
The present invention proposes a kind of using crosslinked protein crystals as seed crystal, hanks power for improving protein crystallization screening Method.Specific technical solution mainly includes two aspects: 1, preparing crosslinked protein crystals;2, crosslinked protein crystals are utilized Crystallization success rate as seed crystal screening protein crystal.
1. preparing seed crystal
The preparation of crosslinked protein crystals mainly includes two steps: (1) crystallization of protein;(2) chemistry of crystal is handed over Connection.Step 1: the crystallization of protein.It is added in each hole of 40 orifice plates from the pond liquid for drawing 80 μ l in same precipitating reagent.By egg White matter solution and precipitant solution are mixed with to obtain crystallization solution by 1:1, and the solution for then drawing 2 μ l is added drop-wise to coverslip On, it, will be on coverslip overturning lid to 40 orifice plates as crystallization of protein hanging drop.40 orifice plates are put into temperature-controlled box at 293k It is incubated for 2 days, protein crystal is prepared.Step 2: the chemical crosslinking of crystal.Protein crystal is collected into the EP pipe of 5ml In, crosslinking agent is added, crystal is chemically crosslinked.After 1 day, cross-linking agent solution is siphoned away, and with ultrapure water crystal wash clean. Crosslinked protein crystals prepared by the present invention include: crosslinking lysozyme, catalase, protease K, thaumatin Matter, chymotrypsinogen A II crystal.Seed crystal used in the present invention mainly includes three classes: 1, selecting crosslinking lysozyme as seed crystal; 2, select crosslinking lysozyme and hydrogen peroxide enzyme crystal as seed crystal, mass ratio 1:1;3, select crosslinking lysozyme crystal, Catalase, protease K, thaumatin matter, chymotrypsinogen A II crystal are as seed crystal, mass ratio 1:1: 1:1:1.In experiment, seed crystal is dissolved in ultrapure water, is configured to the seed crystal solution that concentration is 5-20mg/ml.
2. using crosslinked protein crystals as the crystallization success rate of seed crystal screening protein crystal
Firstly, the sitting drop hole that the seed crystal solution that 0.5-2 μ l step 1 obtains instills crystallization plates is drawn, naturally dry crystallization plates. Then, the protein solution and precipitant solution of 2 μ l is added into each sitting drop hole of crystallization plates using automatic liquor-transferring system, it will Crystallization plates are put into temperature-controlled box, crystallization temperature 277-293K, and crystallization time is 3-7 days.The present invention selects Hampton Research company article No. is the Index of No.HR2-134TMScreening reagent box, crystallization experiment use sitting-drop methods.With 20 kinds of albumen Matter carries out crystallization screening experiment, and observation counts its selection result, and verifies the crystallization success rate of 20 kinds of protein;By to crystal Collection, freezing, diffraction analysis, obtain the diffraction data of protein crystal.
Specific step is as follows:
Step 1: preparing crosslinked protein crystals, including grows protein crystal and crystal is chemically crosslinked.? It needs crystalline mother solution to be all replaced as crosslinker solution in cross-linking reaction, avoids unreacted protein and crosslinking in crystalline mother solution Agent reaction generates floccule precipitating;Then crosslinked protein crystals are dissolved in ultrapure water, concentration is 5-20mg/ml, system Obtain seed crystal solution;
Step 2: the seed crystal solution for drawing 0.5-2 μ l instills the sitting drop hole of crystallization plates, naturally dry crystallization plates;
Step 3: utilizing IndexTMScreening reagent box carries out crystallization condition screening to protein.It is molten that protein is prepared first Liquid;Then the pond liquid of 80 μ l is added into each deep hole of crystallization plates, (is sieved the crystallization drop of 2 μ l using automatic liquor-transferring system Crystallizing agent and protein solution 1:1 is selected to mix) drop is in the sitting drop hole of experimental group, with crystallization rubber belt sealing crystallization plates.Then Crystallization plates are all placed in temperature control box, crystallization temperature 277-293K, and crystallization time is 3-7 days;
Step 4: using the pattern of auto-phot system view protein crystal, and count the crystallization item of protein crystal Number of packages;Simultaneously diffraction protein crystal is collected, diffraction data is obtained.
Use the crystallization experiment of some protein below to verify crosslinking lysozyme crystal as the effect of seed crystal, seed is not added Crystalline substance is as a control group.
Embodiment 1: the screening of crystallization condition is carried out to lysozyme as seed crystal using crosslinking lysozyme crystal, control group is not Do any processing.
Step 1: drawing the sitting drop that the crosslinking lysozyme crystal seed crystal solution that 0.5 μ l concentration is 5mg/ml instills crystallization plates Hole, as experimental group, naturally dry crystallization plates.The crystallization plates of control group are without any processing.
Step 2: being dissolved in pH by six recrystallization lysozymes of the NO.100940 purchased from Seikagaku company, Japan and being 4.6, concentration be 0.I M sodium-acetate buffer in, initial concentration be 20mg/ml to get arrive antalzyme crystallization solution.
Step 3: utilizing IndexTMScreening reagent box carries out crystallization condition screening to lysozyme.This experiment uses sitting-drop methods, The pond liquid of 80 μ l is added into each deep hole of crystallization plates, the crystallization drop of 2 μ l (is screened into crystallizing agent using automatic liquor-transferring system Being mixed with lysozyme soln 1:1) drop is in the sitting drop hole of experimental group, with crystallization rubber belt sealing crystallization plates.In kind knot Brilliant drop is added in the sitting drop hole of control group.
Step 4: the crystallization plates of experimental group and control group are all placed in 277K temperature control box, crystallization time is 3 days, benefit The pattern of lysozyme crystal is observed with automatic photomicrograph system, and counts the crystallization condition number of lysozyme.
Step 5: collecting and freezing protein crystal, the diffraction of crystal is carried out using household x-ray diffractometer, is collected simultaneously Analyze diffraction data.By statistics and analysis, it is as follows to obtain result: being molten by the above-mentioned crystal of X-ray diffraction experimental verification Bacterium zymoprotein crystal, macroscopically can produce X-ray diffraction phenomenon, and the resolution ratio of diffraction isWherein experimental group is molten The crystallization condition number of bacterium enzyme is 80, compared with control group (crystallization number is 40), to be crosslinked lysozyme crystal as the sieve of seed crystal Power is hanked to be significantly increased.
Embodiment 2: crystallization condition sieve is carried out to Proteinase K as seed crystal using crosslinking lysozyme and hydrogen peroxide enzyme crystal Choosing, control group select the lysozyme crystal of crosslinking to make seed crystal.
Step 1: drawing the crosslinking lysozyme and catalase crystal seeds solution instillation knot that 1 μ l concentration is 10mg/ml The crosslinking lysozyme crystal that 1 μ l concentration is 10mg/ml, naturally dry is added as experimental group in the sitting drop hole of brilliant plate in control group Crystallization plates.
Step 2: being dissolved in pH is 4.60 by the No.P6556 Proteinase K of Sigma Co., USA, concentration is 0.08M acetic acid Magnesium, in the buffer of 0.05M natrium cacodylicum, initial concentration is 20mg/ml to get protease K crystallization solution is arrived.
Step 3: utilizing IndexTMScreening reagent box carries out crystallization condition screening to Proteinase K.This experiment uses sitting drop The pond liquid of 80 μ l is added into each deep hole of crystallization plates for method, and using automatic liquor-transferring system, by the crystallization drop of 2 μ l, (screening is tied Brilliant agent and Proteinase K Solution 1:1 mixing) drop is in the sitting drop hole of experimental group, with crystallization rubber belt sealing crystallization plates.In kind Crystallization drop is added in the sitting drop hole of control group.
Step 4: the crystallization plates of experimental group and control group are all placed in temperature control box, crystallization temperature 293K, when crystallization Between 7 days, using the pattern of automatic photomicrograph system observation Proteinase K crystal, and count the conditions number of crystal.
Step 5: collecting and freezing protein crystal, the diffraction of crystal is carried out using household x-ray diffractometer, is collected simultaneously Analyze diffraction data.By observation and statistics, it is as follows to obtain result: being egg by the above-mentioned crystal of X-ray diffraction experimental verification White enzyme K crystal, macroscopically can produce X-ray diffraction phenomenon, and the resolution ratio of diffraction isWherein test histone The crystallization condition number of matter is 54, compared with control group (crystallization number is 26), is made with being crosslinked lysozyme and hydrogen peroxide enzyme crystal It is far longer than only for the screening success rate of seed crystal to be crosslinked lysozyme as the success rate of seed crystal.
Embodiment 3: crosslinking lysozyme crystal, catalase, protease K, thaumatin matter, rotten albumen are utilized Proenzyme A II crystal carries out crystallization condition screening to catalase as seed crystal, and control group selects crosslinking lysozyme and peroxidating Hydrogen enzyme crystal is as seed crystal.
Step 1: draw 2 μ l concentration be the crosslinking lysozyme crystal of 15mg/ml, it is catalase, protease K, unusual Fruit thaumatin T matter, chymotrypsinogen A II crystal seeds solution instill the sitting drop hole of crystallization plates, as experimental group, the knot of control group It is the crosslinking lysozyme and hydrogen peroxide enzyme crystal of 15mg/ml as seed crystal, naturally dry crystallization that 2 μ l concentration are added in brilliant plate Plate.
Step 2: the No.C40 catalase that Sigma Co., USA is produced, being dissolved in pH is 7.00, concentration 0.IM Fourth acetate buffer in, initial concentration 12mg/ml is filtered to remove impurity, as peroxide with 0.22 μm of sterilised membrane filter Change hydrogen enzyme crystallization solution.
Step 3: utilizing IndexTMScreening reagent box carries out crystallization condition screening to catalase.This experiment is using seat The pond liquid of 80 μ l is added into each deep hole for drop method, using automatic liquor-transferring system by the crystallization drop of 2 μ l (screening crystallizing agent and Catalase solution 1:1 mixing) drop is in the sitting drop hole of experimental group, with crystallization rubber belt sealing crystallization plates.In kind Crystallization drop is added in the sitting drop hole of control group.
Step 4: the crystallization plates of experimental group and control group are all placed in temperature control box, crystallization temperature 283K, when crystallization Between 6 days, using the pattern of automatic photomicrograph system observation catalase crystal, and count the conditions number of crystal.
Step 5: collecting and freezing protein crystal, the diffraction of crystal is carried out using household x-ray diffractometer, is collected simultaneously Analyze diffraction data.By observation and statistics, it is as follows to obtain result: being by the above-mentioned crystal of X-ray diffraction experimental verification Hydrogen oxide enzyme crystal, macroscopically can produce X-ray diffraction phenomenon, and the resolution ratio of diffraction isWherein experimental group egg The crystallization condition number of white matter is 46, compared with control group (crystallization number be 30), be crosslinked lysozyme crystal, catalase, Protease K, thaumatin matter, chymotrypsinogen A II crystal are greatly improved as the screening success rate of seed crystal.
Embodiment 4: crosslinking lysozyme crystal, catalase, protease K, thaumatin matter, rotten albumen are utilized Proenzyme A II crystal seeds as seed crystal to canavaline carry out crystallization condition screening, naturally dry crystallization plates, control group Crystallization plates are without any processing.
Step 1: draw 1 μ l concentration be the crosslinking lysozyme crystal of 20mg/ml, it is catalase, protease K, unusual Fruit thaumatin T matter, chymotrypsinogen A II crystal seeds solution instill the sitting drop hole of crystallization plates, as experimental group, the knot of control group Brilliant plate is without any processing.
Step 2: the L7647 canavaline that Sigma Co., USA is produced, is dissolved in that pH is 6.50, concentration is 0.1M's In Bis-tris buffer, initial concentration be 80mg/ml to get arrive canavaline crystallization solution
Step 3: utilizing IndexTMScreening reagent box carries out crystallization condition screening to canavaline.This experiment is using seat The pond liquid of 80 μ l is added into each deep hole for drop method, using automatic liquor-transferring system by the crystallization drop of 2 μ l (screening crystallizing agent and Canavaline solution 1:1 mixing) drop is in the sitting drop hole of experimental group, with crystallization rubber belt sealing crystallization plates.In kind Crystallization drop is added in the sitting drop hole of control group.
Step 4: the crystallization plates of experimental group and control group are all placed in temperature control box, crystallization temperature 288K, when crystallization Between 5 days, using the pattern of automatic photomicrograph system observation canavaline crystal, and count the conditions number of crystal.
Step 5: collecting and freezing protein crystal, the diffraction of crystal is carried out using household x-ray diffractometer, is collected simultaneously Analyze diffraction data.By observation and statistics, it is as follows to obtain result: being knife by the above-mentioned crystal of X-ray diffraction experimental verification Legumin albumin crystal, macroscopically can produce X-ray diffraction phenomenon, and the resolution ratio of diffraction is Wherein test The crystallization condition number of group canavaline is 24, compared with control group (crystallization number is 12), to be crosslinked lysozyme crystal, peroxide Change hydrogen enzyme, protease K, thaumatin matter, the screening success rate that chymotrypsinogen A II crystal is seed crystal, which have, substantially to be mentioned It is high.

Claims (4)

1. a kind of make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals, it is characterised in that including under State step:
The first step grows protein crystal, and is chemically crosslinked to protein crystal, and obtained crosslinked protein crystals are molten In ultrapure water, concentration is 5-20mg/ml, and seed crystal solution is made;
Second step instills the seed crystal solution of 0.5-2 μ l, naturally dry crystallization plates in each sitting drop hole of crystallization plates;
Third step carries out crystallization condition screening to protein using screening reagent box, prepares protein solution first;Then to knot The pond liquid of 80 μ l is added in each deep hole of brilliant plate, screening crystallizing agent and protein solution are mixed according to the mass ratio of 1:1 To crystallization solution, the crystallization drop of 2 μ l is instilled to the sitting drop hole of crystallization plates, seals crystallization plates, and in the crystallization temperature of 277-293K Degree lower crystallization 3-7 days;
4th step, the pattern of view protein crystal count the crystallization condition number of protein crystal;It collects and diffraction protein is brilliant Body obtains diffraction data.
2. a kind of side for making seed crystal raising crystallization of protein success rate using crosslinked protein crystals according to claim 1 Method, it is characterised in that: the seed crystal solution selects crosslinking lysozyme as seed crystal.
3. a kind of side for making seed crystal raising crystallization of protein success rate using crosslinked protein crystals according to claim 1 Method, it is characterised in that: the seed crystal solution selects the crosslinking lysozyme that mass ratio is 1:1 and hydrogen peroxide enzyme crystal as seed It is brilliant.
4. a kind of side for making seed crystal raising crystallization of protein success rate using crosslinked protein crystals according to claim 1 Method, it is characterised in that: the seed crystal solution select the crosslinking lysozyme crystal that mass ratio is 1:1:1:1:1, catalase, Protease K, thaumatin matter and chymotrypsinogen AII crystal are as seed crystal.
CN201610004553.3A 2016-01-06 2016-01-06 Make the method that seed crystal improves crystallization of protein success rate using crosslinked protein crystals Expired - Fee Related CN105566443B (en)

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CN111073870A (en) * 2018-10-19 2020-04-28 南京理工大学 Crystallization method of Roc mutant protein

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Title
A method to produce microseed stock for use in the crystallization of biological macromolecules;Joseph R. Luft,等。;《Acta Crystallographica》;19990202;第988-993页
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