CN105543364B - A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge - Google Patents

A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge Download PDF

Info

Publication number
CN105543364B
CN105543364B CN201610012014.4A CN201610012014A CN105543364B CN 105543364 B CN105543364 B CN 105543364B CN 201610012014 A CN201610012014 A CN 201610012014A CN 105543364 B CN105543364 B CN 105543364B
Authority
CN
China
Prior art keywords
thailand
storehouse midge
gene
midge
rdna
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Expired - Fee Related
Application number
CN201610012014.4A
Other languages
Chinese (zh)
Other versions
CN105543364A (en
Inventor
黄恩炯
陈敏
杨美琼
张建明
高博
张建庆
王飞鹏
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
FUJIAN INTERNATIONAL TRAVEL HEALTHCARE CENTER
Original Assignee
FUJIAN INTERNATIONAL TRAVEL HEALTHCARE CENTER
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by FUJIAN INTERNATIONAL TRAVEL HEALTHCARE CENTER filed Critical FUJIAN INTERNATIONAL TRAVEL HEALTHCARE CENTER
Priority to CN201610012014.4A priority Critical patent/CN105543364B/en
Publication of CN105543364A publication Critical patent/CN105543364A/en
Application granted granted Critical
Publication of CN105543364B publication Critical patent/CN105543364B/en
Expired - Fee Related legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6888Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/686Polymerase chain reaction [PCR]
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00Oligonucleotides characterized by their use
    • C12Q2600/158Expression markers

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Biophysics (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Physics & Mathematics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

The present invention discloses a kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge, it is characterised in that the 16S rDNA gene orders that the Storehouse midge is obtained using molecular biology method carry out Identification of Species by the comparison of gene order similitude to the Storehouse midge.Thailand's Storehouse midge method for identifying molecules provided by the invention is advantageously implemented Thailand's Storehouse midge and accurately and rapidly identifies.

Description

A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge
Technical field
The present invention relates to species identification fields, and in particular to the special gene sequence of Thailand's Storehouse midge and its Molecular Identification side Method.
Background technology
Storehouse midge is one of three big blood sucking midge of China, can propagate blue tongue disease, live in a variety of Amphixenosis such as globidiosis, is a kind of Important Vector.Therefore, to the identification of blood sucking midge and identification, it is that monitoring passes the pathogenetic basis of disease with control midge, and The core procedure in prevention and control of diseases field.Know currently, relying primarily on veteran taxology expert to the identification of blood sucking midge Other morphological feature realizes, once encounter sibling species and morphological feature grasp it is very intractable not full Specimen identification;Moreover, right The Morphological Identification of blood sucking midge needs to complete by making slide sample, complex for operation step, the period is long, difficulty is big, therefore, urgently It need to seek a kind of new method, to make up the defect of conventional sorting methods.
Molecular Identification technology is to illustrate the difference between species so that hereditary material DNA sequence analysis is foundation, from molecular water Quickly and accurately differentiate species on flat.It is the product that molecular biology, computer science are combined with traditional taxonomy, is made For a kind of brand-new taxology technology, the defect of traditional form identification is greatly compensated for, more and more biologists have been caused Attention.In recent years, with the foundation of the determined dna sequence method on the bases PCR and being widely used, rDNA (rDNA)And mitochondrial DNA(mtDNA)Equal genes are gradually taken seriously, and are answered extensively in the Molecular Identification of blood sucking midge With.The technology is proved each other with traditional sorting technique, can not only solve the problems such as sample is incomplete in identification, but also can be real The Rapid identification of existing blood sucking midge.Thailand's Storehouse midge special gene sequence provided by the invention is advantageously implemented the quick mirror of Thailand's Storehouse midge It is fixed, shorten qualification time.
Invention content
The purpose of the present invention is to provide a kind of special gene sequences and its method for identifying molecules of Thailand's Storehouse midge.By dividing Sub- biological method obtains Thailand's Storehouse midge(Culicoides inthanonensis)Specific gene -16S rDNA gene orders, By the comparison of gene order similitude, Thailand's Storehouse midge can be accurately and rapidly identified.
To achieve the above object, the present invention is achieved through the following technical solutions:
Using small insects minim DNA method for preparing template, by improved PCR reaction conditions, by the primer synthesized The 16S rDNA genes of Thailand's Storehouse midge are expanded, PCR product sequence is sent to be measured by professional biotech firm.Sequencing result passes through manual school To, sequence assembly, and Blast similarity searchings are carried out in NCBI, it is ensured that gained sequence is target sequence.It is of the present invention Thailand's Storehouse midge specific gene, be 16S rDNA genes, the 16S rDNA gene orders such as SEQ ID No.1 institutes of the Storehouse midge Show(Without primer):
The PCR primer of Thailand's Storehouse midge 16S rDNA genes of the present invention, it is characterised in that PCR primer sequence is:
5 ' GCCTGTTTATCAAAAACAT 3 ' of forward primer
5 ' CCGGTCTGAACTCAGATCA 3 ' of reverse primer.
The method for identifying molecules of Thailand's Storehouse midge of the present invention, including:
1)The separation and Extraction DNA from insect tissue to be measured;
2)Using the DNA as template, the primer that uses for:5 ' GCCTGTTTATCAAAAACAT 3 ' of forward primer, reversely draws 5 ' CCGGTCTGAACTCAGATCA 3 ' of object goes out the 16S rDNA genes of the insect by PCR amplification;
3)Then appropriate step 2 is taken)The PCR amplification 16S rDNA gene agarose electrophoresis that goes out point From, observed under ultraviolet lamp after ethidium bromide staining, according to the size of amplified production judge result.If can correspondingly specificity expand Increase the band for that size is about 511 bp, biotech firm is sent to be sequenced;
4)According to sequencing result, if the similitude of target gene sequence and SEQ ID No.1 are 98% or more, you can judge The test serum is Thailand's Storehouse midge.
The Identification of Species of Thailand's Storehouse midge is realized by Morphological Identification, and is checked through authoritative expert, to ensure to finish The reliability of fruit.
The primer is synthesized according to document, 5 ' GCCTGTTTATCAAAAACAT 3 ' of forward primer, reverse primer 5 ' CCGGTCTGAACTCAGATCA 3’。
The present invention can use agarose gel electrophoresis detection method to detect amplification.
Advantages of the present invention is:
1)The present invention is combined using traditional Morphological Identification with molecular classification method, is identified the Storehouse midge, It can ensure that the accuracy and reliability of species identification.
2)Compared with traditional Morphological Identification method, Thailand's Storehouse midge method for identifying molecules that the present invention establishes can effectively contract The qualification time of short Thailand's Storehouse midge.
Description of the drawings
Fig. 1 is Thailand's Storehouse midge 16S rDNA gene PCR amplification electroresis appraisal figures.Number is described as follows:Swimming lane 1 is the moon Property control, swimming lane 2-4 be Thailand's Storehouse midge female adult 16S rDNA genes, detection size be about 511 bp band.M is DL 2000 DNA marker.
Fig. 2 is unknown Storehouse midge female adult 16S rDNA gene PCR amplification electroresis appraisal figures.Number is described as follows:Swimming lane 1 For negative control, swimming lane 2-3 is the 16S rDNA genes of unknown Storehouse midge female adult, the band that detection size is about 511 bp.M is DL 2000 DNA marker.
Specific implementation mode
1 Thailand's Storehouse midge of embodiment(Culicoides inthanonensis)The acquisition of 16S rDNA gene orders
1, the acquisition of Thailand's Storehouse midge sample
Thailand's Storehouse midge is the sample that field acquisition obtains, and is directly stored in 95% alcohol after chilled execution.Sample is made It is identified through authoritative expert after slide, it is ensured that the accuracy of qualification result.Before preparation of specimen, picking Thailand Storehouse midge chest end and abdomen The former sections in portion are placed in 95% alcohol, are extracted for DNA.
2, prepared by DNA profiling
Thailand Storehouse midge DNA is extracted using small insects trace DNA templet preparation method(Wen Lizhang edits entomology research Method and the Beijing technology introduction [M]:Science Press, 2010. pp278-286), the DNA sample of extraction is stored in -20 DEG C It is spare.
3, primer synthesizes
The present embodiment the primer is as follows:
5 ' GCCTGTTTATCAAAAACAT 3 ' of forward primer
5 ' CCGGTCTGAACTCAGATCA 3 ' of reverse primer.
4, PCR amplification
The PCR reaction systems of the present embodiment are as shown in table 1.
1 Thailand's Storehouse midge 16S rDNA gene PCR reaction systems of table(50uL systems)
Ingredient Volume(uL)
Template 2
Primer 1 1
Primer 2 1
10 × buffer solution 5
dNTPs 1
Taq archaeal dna polymerases 2.5
ddH2O 37.5
The response procedures of the present embodiment are as shown in table 2.
2 Thailand's Storehouse midge 16S rDNA gene PCR response procedures of table
Step Reaction temperature(℃) Time Recurring number
Pre-degeneration 94 3 min
Denaturation 94 45 s 35
Annealing 48 45 s 35
Extend 72 60 s 35
Extend 72 7 min
PCR product is saved backup in 4 DEG C.
5, pcr amplification product detects
5 μ L pcr amplification products are taken, with 1% agarose gel electrophoresis(130V voltages, 35 min of electrophoresis).Ethidium bromide staining, Gel imaging system detects, and electrophoresis pattern is referring to attached drawing 1.
6, gene sequencing
The selection preferable pcr amplification product of 3-5 effect is sent to be sequenced after purification by biotech firm(Be sequenced the primer with PCR the primers are identical), it is 16S rDNA gene orders-SEQ of Thailand's Storehouse midge after the calibrated splicing of gained gene order ID No.1。
The identification of 2 unknown Storehouse midge of embodiment
1, the acquisition and preservation of sample
Using net method is waved or lamp lures method to be acquired, directly it is stored in 95% alcohol after the chilled execution of sample of harvest.
2, prepared by DNA profiling
Under anatomical lens or stereomicroscope, chooses a female Storehouse midge at random from collected midge class sample, use Small insects trace DNA templet preparation method extracts Storehouse midge DNA(Wen Lizhang edits entomology research method and technology introduction The Beijing [M]:Science Press, 2010. pp278-286), the DNA sample of extraction saves backup in -20 DEG C, every part of sample one A number.
3, the acquisition of objective gene sequence
3.1 primers synthesize
Using the unknown Storehouse midge DNA of acquisition as template, synthetic primer, the primer sequence is as follows:
5 ' GCCTGTTTATCAAAAACAT 3 ' of forward primer
5 ' CCGGTCTGAACTCAGATCA 3 ' of reverse primer.
3.2 PCR amplification
The PCR reaction systems of the present embodiment are as shown in table 3.
3 unknown Storehouse midge 16S rDNA gene PCR reaction systems of table(50uL systems)
Ingredient Volume(uL)
Template 2
Primer 1 1
Primer 2 1
10 × buffer solution 5
dNTPs 1
Taq archaeal dna polymerases 2.5
ddH2O 37.5
The response procedures of the present embodiment are as shown in table 4.
4 unknown Storehouse midge 16S rDNA gene PCR response procedures of table
Step Reaction temperature(℃) Time Recurring number
Pre-degeneration 94 3 min
Denaturation 94 45 s 35
Annealing 48 45 s 35
Extend 72 60 s 35
Extend 72 7 min
PCR product is saved backup in 4 DEG C.
3.3 pcr amplification products detect and gene sequencing
5 μ L pcr amplification products are taken, with 1% agarose gel electrophoresis(130V voltages, 35 min of electrophoresis).Ethidium bromide contaminates Color.Gel imaging system detects, and electrophoresis pattern is referring to attached drawing 2.Find out that the unknown Storehouse midge of embodiment 2 also can specificity by attached drawing 2 Amplify the product that size is about 511 bp, the product for being about 511 bp by size send biotech firm to be sequenced, as a result display with The similitude of gene order SEQ ID NO. 1 is 99.9%, thus can determine that the unknown Storehouse midge is Thailand's Storehouse midge.

Claims (2)

1. a kind of Thailand's Storehouse midge specific gene, which is characterized in that the gene is 16S rDNA genes, is gene as described below Sequence SEQ ID No.1:
2. a kind of method for identifying molecules of Thailand's Storehouse midge, including:
1)The separation and Extraction DNA from insect tissue to be measured;
2)Using the DNA as template, primer that 16S rDNA genes are used for:5 ' GCCTGTTTATCAAAAACAT of forward primer 3 ' ', 5 ' CCGGTCTGAACTCAGATCA 3 ' of reverse primer goes out Thailand Storehouse midge 16S rDNA by PCR amplification Gene;
3)Then appropriate step 2 is taken)The 16S rDNA genes that go out of PCR amplification detached with agarose electrophoresis, pass through It is observed under ultraviolet lamp after ethidium bromide staining, according to the judgement of the size of amplified production as a result, if energy specific amplification goes out size For the band of 511 bp, biotech firm is sent to be sequenced;
4)According to sequencing result, if accordingly 16S rDNA gene orders and the similitude of SEQ ID No.1 are 98% or more, i.e., It can determine whether that the test serum is Thailand's Storehouse midge.
CN201610012014.4A 2016-01-08 2016-01-08 A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge Expired - Fee Related CN105543364B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN201610012014.4A CN105543364B (en) 2016-01-08 2016-01-08 A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN201610012014.4A CN105543364B (en) 2016-01-08 2016-01-08 A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge

Publications (2)

Publication Number Publication Date
CN105543364A CN105543364A (en) 2016-05-04
CN105543364B true CN105543364B (en) 2018-08-28

Family

ID=55822921

Family Applications (1)

Application Number Title Priority Date Filing Date
CN201610012014.4A Expired - Fee Related CN105543364B (en) 2016-01-08 2016-01-08 A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge

Country Status (1)

Country Link
CN (1) CN105543364B (en)

Families Citing this family (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN108486121B (en) * 2018-01-25 2020-02-11 遵义医学院 Specific DNA sequence of Cuicoides spinuloides and molecular identification method thereof
CN107988232A (en) * 2018-01-25 2018-05-04 遵义医学院 The DNA bar code standard sequence and its method for identifying molecules of a kind of open country Storehouse midge
CN108034733B (en) * 2018-01-29 2020-05-05 遵义医学院 DNA bar code standard sequence of Culicoides kindred species and molecular identification method thereof
CN108486122A (en) * 2018-01-29 2018-09-04 遵义医学院 A kind of the DNA bar code standard sequence and its method for identifying molecules of South Mountain Storehouse midge

Family Cites Families (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102690829B (en) * 2012-05-16 2013-09-25 福建国际旅行卫生保健中心 A DNA bar code standard gene sequence for Taiwan Lasiohelea
KR101443716B1 (en) * 2014-04-08 2014-09-26 주식회사 현일바이오 Methods for Simultaneously Detecting Nontuberculous mycobacteria and Kits Using the Same

Also Published As

Publication number Publication date
CN105543364A (en) 2016-05-04

Similar Documents

Publication Publication Date Title
CN105543249B (en) A kind of beauty Storehouse midge specific gene and its method for identifying molecules
CN105483261B (en) A kind of specific gene and its method for identifying molecules of indigo plant abdomen Storehouse midge
CN105543364B (en) A kind of specific gene and its method for identifying molecules of Thailand's Storehouse midge
CN103805609B (en) A kind of lasiohelea taiwana molecular assay method
CN107557478A (en) A kind of method and its application that amplification the Changjiang river fish chondriogen total order is combined based on degenerate primer
CN107326077A (en) A kind of molecular labeling for differentiating spotted maigre genetic sex and its application
CN106086167B (en) The primer sequence and method of a kind of Rapid identification Larimichthys crocea, little yellow croaker and Collichthys lucidus
CN111471756B (en) Specific DNA fragment SSM1 for sturgeon gender identification and application
CN110607359A (en) Patinopecten yessoensis female specific marker combination and application
CN105420399B (en) A kind of specific gene and its method for identifying molecules of the sub- naked midge of palm fibre
CN113637765A (en) Molecular marker for identifying genetic sex of micropterus salmoides and application
CN105505942B (en) A kind of specific gene and its method for identifying molecules of peacefulness pincers midge
CN103952420A (en) Dasyhelea specific gene sequence
CN108384791A (en) A kind of specific gene and its method for identifying molecules of Beijing Storehouse midge
CN106119384B (en) Aeromonas hydrophila nucleic acid analysis method and application thereof in forensic detection
CN110724735B (en) SNP locus and primer for rapidly identifying individual sex of fugu obscurus and method thereof
CN104498593B (en) Identify or auxiliary identify storage bean weevil primer to and test kit
CN108486121B (en) Specific DNA sequence of Cuicoides spinuloides and molecular identification method thereof
CN104962660B (en) A kind of mottle clam species real-time fluorescence PCR specific detection system and application
CN109810982A (en) The specific gene and its method for identifying molecules of short hairs Storehouse midge
CN113981108B (en) Molecular marker for genetic sex identification of megalobrama amblycephala and application of molecular marker
CN108342398A (en) A kind of specific gene and its method for identifying molecules of open country Storehouse midge
CN108486122A (en) A kind of the DNA bar code standard sequence and its method for identifying molecules of South Mountain Storehouse midge
CN104673890B (en) Cotton black aphid PCR quick determination methods based on specific SS COI primers
CN113881786A (en) Primers, primer kit and identification method for identifying Pseudobagrus ussuriensis, Pseudobagrus ussuriensis and cross-crossing individuals of Pseudobagrus ussuriensis and Pseudobagrus ussuriensis

Legal Events

Date Code Title Description
C06 Publication
PB01 Publication
C10 Entry into substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant
CF01 Termination of patent right due to non-payment of annual fee

Granted publication date: 20180828

CF01 Termination of patent right due to non-payment of annual fee