Summary of the invention
The invention discloses the mutational sites of the aspartokinase III different from published mutational site.Inventor
To Escherichia coli aspartokinase III(SEQ ID NO:1) Ile342 amino acid sites carried out amino acid replacement, obtain
The aspartokinase III of saltant type.
Specifically, the invention discloses a kind of active polypeptide with aspartokinase III, this kind of polypeptide includes
Amino acid sequence SEQ ID NO:1, or the polypeptide fragment or homeopeptide of the sequence with same enzymatic activity, and be equivalent to
There is amino acid replacement mutation at Ile342 amino acid sites in SEQ ID NO:1 sequence.In the work for retaining aspartokinase
Under the premise of property, amino acid residue at above-mentioned mutational site can be with any natural or non-natural amino acids or amino acids seemingly
Object substitution.
Because the aspartokinase of saltant type will be applied to lysine or threonine produces, mutation cannot seriously drop
The activity of low aspartokinase.Polypeptide provided in the present invention at least partly possesses day shown in SEQ ID NO:1 sequence
The activity of aspartic acid kinases.
Certain specific amino acid are not limited to for replace original amino acid residue at above-mentioned site.Arbitrary protein ammonia
Base acid or non-protein amino acid may serve to replace original amino acid residue at above-mentioned site.In some embodiments, on
The original acid residue of rheme point it is natural by other, Argine Monohydrochloride replaces.Other Argine Monohydrochlorides being previously mentioned, refer to
22 amino acid in addition to isoleucine (Ile) found in natural polypeptides molecule, i.e. alanine (Ala), leucine
(Leu), asparagine (Asn), lysine (Lys), aspartic acid (Asp), methionine (Met), cysteine (Cys), benzene
Alanine (Phe), glutamic acid (Glu), threonine (Thr), glutamine (Gln), tryptophan (Trp), glycine (Gly), figured silk fabrics
Propylhomoserin (Val), proline (Pro), serine (Ser), tyrosine (Tyr), arginine (Arg), histidine (His), seleno half
Cystine, selenomethionine, pyrrolysine.It is L- amino for displaced amino acid in some preferred embodiments
Acid.
In other embodiments, it can be non-protein ammonia for replace original amino acid residue at mutational site
Base acid, that is, the amino acid being not present in natural polypeptides.Non-protein amino acid includes: alpha-Aminoadipic acid, beta-amino adipic acid,
Butyrine, α-aminoacid, Beta-alanine, 4-Aminobutanoicacid, 5- aminovaleric acid, 6-aminocaprolc acid, 8- aminocaprylic acid,
9 aminononanoic acid, 10- aminocapric acid, 12 amino dodecanoic acid, alpha-amido suberic acid, β-Cyclohexylalanine, citrulling take off
Hydrogen alanine, α-Cyclohexylglycine, propargylglycine, pyroglutamic acid, 4- para-benzoylphenylalanine, δ-hydroxylysine, 4-
Hydroxyproline, alloisoleucine, lanthionine (Lan), nor-leucine, norvaline, ornithine, phenylglycine, nipecotic acid,
Sarcosine, 1,2,3,4- tetrahydroisoquinoline -3- carboxylic acid, allothreonine, thiazolidine -4- carboxylic acid, γ-aminobutyric acid (GABA) are different
Cysteine, diaminopropionic acid, 2,4-diamino-butanoic, 3,4- diaminobutyric acids, biphenylalanine, 4- fluorophenylalanine etc..
Non-protein amino acid further includes the derivative of Argine Monohydrochloride, for example, homomethionine, homoserine, high dried meat ammonia
Acid, high threonine, high tryptophan, high tyrosine, high histidine, high-lysine etc..
In some embodiments, aspartokinase shown in SEQ ID NO:1 sequence is at 342 amino acid sites by such as
Lower amino acid replacement: Ala, Leu, Asn, Lys, Asp, Met, Cys, Phe, Glu, Thr, Gln, Trp, Gly, Val, Pro, Ser,
Tyr, Arg or His.
In a preferred embodiment, the amino acid residue at 342 sites of aspartokinase is replaced by Ala.
It should be pointed out that the sequence of aspartokinase of the present invention is not limited solely to shown in SEQ ID NO:1
Sequence.With SEQ ID NO:1 with sequence homology and with same enzymatic activity polypeptide sequence all of the present invention
In the range of aspartokinase is covered.For example, the present disclosure applies equally to derive from other microorganism kinds or other large intestines
The aspartokinase of bacillus strain.
There is the polypeptide sequence of sequence homology with SEQ ID NO:1, SEQ can be equivalent to disclosed in except the present invention
Occur compared with SEQ ID NO:1 sequence at one or more amino acid sites other than 342 mutational sites of ID NO:1 sequence
Amino acid replacement, amino acid deletion or insertion.Also, for homologous polypeptide sequence, at least partly retaining aspartokinase
Under the premise of enzymatic activity, amino acid replacement, amino acid deletion or insertion can also be carried out at other amino acid sites.Usually come
Say, retain aspartokinase it is active under the premise of, arbitrary amino acid site in SEQ ID NO:1 sequence in addition to 342,
It can be carried out amino acid replacement.In some embodiments, 1,2,3,5,10,20,30,40,50 in SEQ ID NO:1 sequence
A amino acid sites have all carried out amino acid replacement.In some embodiments, 50,60,70 in SEQ ID NO:1 sequence,
80,90,100 amino acid sites, have all carried out amino acid replacement.
Polypeptide containing one or more amino acid insertions compared with SEQ ID NO:1 sequence is considered as SEQ ID NO:1 sequence
The homologous sequence of column.Amino acid insertion can occur in any site of SEQ ID NO:1 sequence.Similarly, with SEQ ID
NO:1 sequence compares the homologous sequence that the polypeptide containing one or more amino acid deletions is considered as SEQ ID NO:1 sequence.Amino
Acid deletion can occur in any site in addition to 342 of SEQ ID NO:1 sequence.
The homologous sequence of SEQ ID NO:1 sequence has at least 75%, 80%, 85%, 90%, 95%, 99% and SEQ ID NO:1 sequence
It arranges identical.Sequence alignment uses method well known in the art or computer software.
The invention also includes comprising being equivalent to 342 amino acid mutation sites in SEQ ID NO:1 sequence, there is aspartic acid
One segment of the SEQ ID NO:1 sequence of kinase activity and the homeopeptide of the polypeptide fragment.It is above-mentioned to have asparagus fern ammonia
The polypeptide fragment of kinase activity, with SEQ ID NO:1 sequence or its homologous sequence the difference is that, the end N- and/
Or there are one or more amino acid deletions in the end C-.For example, under the premise of at least partly reservation aspartokinase is active,
The segment of SEQ ID NO:1 sequence can have 5 in the end N- and/or the end C-, and 10,15,20,30,40, or
50 amino acid deletions.Similarly, under the premise of at least partly reservation aspartokinase is active, SEQ ID NO:1 sequence
The segment of homologous sequence can have 5,10,15,20,30,40 or 50 in the end N- and/or the end C-
Amino acid deletions.
The invention also discloses one section of polynucleotides, and one section of coding is of the present invention aspartokinase enzymatic activity
Polypeptide, the polypeptide include have at 342 amino acid sites amino acid sequence shown in the SEQ ID NO:1 of amino acid replacement,
Polypeptide fragment or their homologous sequence with the active sequence of aspartokinase.For example, polynucleotide can have
Just like sequence shown in SEQ ID NO:2, wherein the codon of coding Ile342 amino acid sites is modified, to cause above-mentioned
Amino acid replacement at site.The invention also includes as used different degenerate codon and caused by with above-mentioned sequence not
Same polynucleotide sequence, and polypeptide that carried out coding optimization for different hosts, that coding is same or homologous
The polynucleotide sequence of sequence.
The invention also discloses an expression vector, which includes one section of polynucleotide sequence, and the sequence is compiled
The polypeptide fragment of the code aspartokinase of the present invention for having enzymatic activity or aspartokinase and theirs is homologous
Polypeptide.Expression vector refers to a polynucleotide construction, is generally made of DNA molecular, and it is more to can be realized carrier the preceding paragraph
The gene transfer of polynucleotide, the duplication in host cell and gene expression.The polynucleotide is relative to host cell
Can be it is heterologous, be also possible to it is homologous but by modification.The duplication of expression vector can be by being integrated into host cell base
It is replicated because being replicated in group, or by episomal vector (such as plasmid).Episomal vector has can be in host cell
The duplication subsequence of middle self-replacation.
The expression vector used in the method disclosed in the present, can be high copy number plasmid, to realize in host
The purpose that high-level aspartokinase is expressed in cell, is also possible to the plasmid of middle copy number or low copy number.Expression vector
The general marker gene with for screening transformant.Usually used marker gene is antiviral antibiotic gene, such as anti-ammonia benzyl
The gene of penicillin, kanamycins or tetracycline.The selection of marker gene can determine according to host cell and carrier used
It is fixed.
Expression vector of the present invention is that by the carrier of polynucleotide expression of the present invention.Usually come
It says, expression vector includes the adjusting sequence to work to the polynucleotide sequence being intended by, such as promoter and enhancer.
Promoter in expression vector can be composing type, be also possible to induction type.Adjusting sequence can be according to host used
Bacterium, expected polypeptide expression level etc. are selected.In some embodiments, constructed expression vector is used in prokaryotes
Aspartokinase is expressed in cell.In a preferred embodiment, constructed expression vector in bacterium for expressing asparagus fern
Histidine kinase, such as Escherichia coli or Corynebacterium glutamicum.
Expression vector of the present invention further includes that can be realized aspartokinase of the present invention to merge egg
The carrier of white form expression.Fusion protein refers to comprising at least two sections disjunct polypeptide or polypeptide fragments under native state
Hybrid protein.The expression vector of expressed fusion protein increases by one section of ammonia in the end N- of polypeptide to be expressed or the end C-
Base acid sequence.Increased amino acid sequence may but be not limited to provide following effect, such as enhancing aspartokinase in place
Expression in chief cell, or be conducive to the purifying of aspartokinase.
The invention also discloses the host cells comprising the polynucleotide or expression vector.A variety of different hosts are thin
Born of the same parents can be used for expressing aspartokinase of the present invention.Eukaryotic cells (such as yeast or zooblast) and protokaryon
Biological cell may be used to recombinantly express aspartokinase of the present invention.The preferred prokaryote of host.It is preferred that
Bacterium is as host.For example, host can be the bacterium of following kind: escherichia coli, Serratieae, brevibacterium is rodlike
Bacillus etc..It is preferred that Escherichia coli are as host strain.The coli strain that can be used for lysine and threonine production includes K-
12, JM109, GT3 etc..
Host strain for fermenting and producing lysine can contain complete L-lysine biosynthesis pathway, can be independent
Produce lysine.For example, the wild-type e. coli of the gene order containing coding SEQ ID NO:1 polypeptide may be used as host
Bacterium.But it is extremely low using wild-type strain production lysine production.Coding asparagus fern of the present invention is converted into above-mentioned host strain
The polynucleotide of histidine kinase saltant type can significantly improve the yield of lysine.In addition, host strain can also not include day
Aspartic acid kinases III gene, or not comprising active aspartokinase III gene.It is converted into this host strain
Polynucleotide of the present invention can make recombinant bacterium the production lysine, threonine of building.
The host cell that the present invention is previously mentioned may include other gene mutation, bases for being conducive to improve lysine production
Because of deletion or gene insertion, and the modification to Gene expression and regulation sequence.Such as some enzymes in Bio-synthetic pathway of lysine
Mutation and central metabolic pathway in some enzymes mutation.Such as dihydrodipicolinic acid synthase (SEQ ID NO:3), it is urged
Change the dehydration condensation of aspartic-β-semialdehyde and pyruvic acid, this is aspartate family amino acid biosynthetic pathway point
Branch is first exclusive enzyme of Bio-synthetic pathway of lysine.The enzyme is encoded by dapA gene (SEQ ID NO:4), its activity
Also inhibited (Blickling, S.and Knablein, J. (1997) Biol.Chem.378:207-10) by lysine.
EP0733710 refers to 2 kinds of saltant types for helping to improve the dihydrodipicolinic acid synthase of lysine production.
Expression vector can be selected according to host cell used.For example, being suitable for the expression vector of Escherichia coli
It include: pBluescript serial carrier, pUC serial carrier (such as pUC18, pUC19, pBR322, pBR329, pQE70, pQE60,
PQE-9, pNH8A, pNH16A, pNH18A, pNH46A, ptrc99a, pKK223-3, pKK233-3, pDR540, pRIT5,
PLG338, pKC30, pHSG299, pHSG399, pRep4, pACYC177, pACYC184, pRSF1010, pBW22 etc.).It is suitable for
The expression vector of Corynebacterium glutamicum includes: Escherichia coli/Corynebacterium glutamicum shuttle carrier (such as pEC-XT99A, pEC-
XC99E, pET-XK99E etc.).There are also some other expression vectors are available, such as Kirchner et al., 2003,
J.Biotechnol., 104:287-299, and " Cloning Vectors " (Pouwels et al. (eds.) Elsevier,
Amsterdam New York Oxford, 1985) carrier stated in.Expression vector can be turned with any suitable method
Change into host cell, such as Maniatis et al. is in Molecular Cloning, A laboratory Manual (1982,
Cold Spring Harbor Laboratory) certain methods described in a book, such as: electricity turns, microinjection, particle gun,
Or chemical transformation (such as calcium phosphate method).
The invention also discloses a kind of methods for producing L-lysine or L-threonine, comprising: (i) in suitable culture medium
In and cultivate host cell as described above under proper culture conditions, expression has the active polypeptide of aspartokinase, should
Polypeptide is made of SEQ ID NO:1 sequence, or by SEQ ID NO:1 sequence fragment or its homeopeptide with same enzymatic activity
Composition, and have mutation at the Ile342 amino acid sites for being equivalent to SEQ ID NO:1 sequence;(ii) mentioned from above-mentioned culture solution
Take L-lysine or L-threonine.
The culture medium utilized must be appropriate for the needs of particular host cell.Utilizable carbon source is sugar and carbon hydrate
Object, such as glucose, sucrose, lactose, fructose, maltose, molasses, starch and cellulose;Oil & fat, such as soybean oil, to
Day, certain herbaceous plants with big flowers was oily, and peanut oil and coconut are fatty;Fatty acid, such as palmitinic acid, stearic acid and linoleic acid;Alcohol, such as glycerol and ethyl alcohol;With
And organic acid, such as acetic acid.These substances can be used alone or as a mixture.Utilizable nitrogen source is nitrogen-containing organic compound,
Such as peptone, yeast extract, meat extract, malt extract, corn pulp, soy meal and urea;Or inorganic compound, such as ammonium sulfate, chlorine
Change ammonium, ammonium phosphate, ammonium carbonate and ammonium nitrate.Nitrogen source can be used alone or as a mixture.Phosphorus source can be potassium dihydrogen phosphate or phosphoric acid
Hydrogen dipotassium or corresponding sodium salt.Culture medium can also contain metal salt, such as magnesium sulfate or ferric sulfate.Finally, except mentioned above
Substance outside, required growth promoting substance such as amino acid and vitamin can be added.Described additive can once or in batches
It is added in culture medium.
Cultivating host cell of the present invention can be using the fermentation process generally used.For example, cell can carry out
Batch culture, fed-batch culture, or continuous culture.Cultural method is in Encyclopedia of Bioprocess
Technology–Fermentation,Biocatalysis,and Bioseparation,Volumes1-5,Flickinger,
M.C., Drew, S.W. (eds.) have comprehensive description in mono- book of 1999John Wiley&Sons..Cultivation temperature can be 20 °C
To 42 °C, preferably 30 °C to 40 °C, preferably 30 °C to 37 °C.The pH of culture medium can be 5.0 to 9.0, preferably 6.0 to 8.0, example
Such as 7.0.Incubation time can from several hours to several days.For example, if incubation time can be 12h and arrive using batch culture
36h;If incubation time can be up to 21 days or longer using continuous culture.
Product (L-lysine or L-threonine) is extracted from culture solution can use well known method, such as
The method of ion exchange resin is used described in US5342766.
It is disclosed in this invention by mutation to there is the active polypeptide of aspartokinase or polypeptide fragment to help to mention
The biosynthesis yield of high-lysine and threonine.On the basis of the present invention, the gene for amino acids production can be constructed
Engineering bacteria, including Corynebacterium glutamicum and Escherichia coli.The host strain of saltant type aspartokinase of the present invention is expressed,
L-lysine and L-threonine can be produced in suitable culture medium.
The invention discloses the saltant type of new escherichia coli aspartokinase III, mutational site with reported
The saltant type in road is different.Overexpression saltant type aspartokinase of the invention can be improved lysine production.This is optimization
The biosynthesis of lysine provides more more options, helps to construct Strains for Lysine Production or improves lysine production.