CN103782301B - 用于基于网络的生物活性评估的系统与方法 - Google Patents
用于基于网络的生物活性评估的系统与方法 Download PDFInfo
- Publication number
- CN103782301B CN103782301B CN201280043499.3A CN201280043499A CN103782301B CN 103782301 B CN103782301 B CN 103782301B CN 201280043499 A CN201280043499 A CN 201280043499A CN 103782301 B CN103782301 B CN 103782301B
- Authority
- CN
- China
- Prior art keywords
- biological
- nodes
- activity
- vector
- network
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
Classifications
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16H—HEALTHCARE INFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR THE HANDLING OR PROCESSING OF MEDICAL OR HEALTHCARE DATA
- G16H50/00—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics
- G16H50/30—ICT specially adapted for medical diagnosis, medical simulation or medical data mining; ICT specially adapted for detecting, monitoring or modelling epidemics or pandemics for calculating health indices; for individual health risk assessment
-
- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
Landscapes
- Health & Medical Sciences (AREA)
- Engineering & Computer Science (AREA)
- Medical Informatics (AREA)
- Life Sciences & Earth Sciences (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Physics & Mathematics (AREA)
- General Health & Medical Sciences (AREA)
- Public Health (AREA)
- Molecular Biology (AREA)
- Biotechnology (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Physiology (AREA)
- Spectroscopy & Molecular Physics (AREA)
- Theoretical Computer Science (AREA)
- Biophysics (AREA)
- Databases & Information Systems (AREA)
- Data Mining & Analysis (AREA)
- Pathology (AREA)
- Biomedical Technology (AREA)
- Epidemiology (AREA)
- Primary Health Care (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Apparatus Associated With Microorganisms And Enzymes (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Priority Applications (1)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| CN201710237916.2A CN107391961B (zh) | 2011-09-09 | 2012-09-07 | 用于基于网络的生物活性评估的系统与方法 |
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201161532972P | 2011-09-09 | 2011-09-09 | |
| US61/532,972 | 2011-09-09 | ||
| PCT/EP2012/003760 WO2013034300A2 (en) | 2011-09-09 | 2012-09-07 | Systems and methods for network-based biological activity assessment |
Related Child Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN201710237916.2A Division CN107391961B (zh) | 2011-09-09 | 2012-09-07 | 用于基于网络的生物活性评估的系统与方法 |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| CN103782301A CN103782301A (zh) | 2014-05-07 |
| CN103782301B true CN103782301B (zh) | 2017-05-17 |
Family
ID=46963652
Family Applications (2)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN201280043499.3A Active CN103782301B (zh) | 2011-09-09 | 2012-09-07 | 用于基于网络的生物活性评估的系统与方法 |
| CN201710237916.2A Active CN107391961B (zh) | 2011-09-09 | 2012-09-07 | 用于基于网络的生物活性评估的系统与方法 |
Family Applications After (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CN201710237916.2A Active CN107391961B (zh) | 2011-09-09 | 2012-09-07 | 用于基于网络的生物活性评估的系统与方法 |
Country Status (5)
| Country | Link |
|---|---|
| US (1) | US20140214336A1 (https=) |
| EP (1) | EP2754075A2 (https=) |
| JP (3) | JP6138793B2 (https=) |
| CN (2) | CN103782301B (https=) |
| WO (1) | WO2013034300A2 (https=) |
Families Citing this family (22)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| EP2608122A1 (en) | 2011-12-22 | 2013-06-26 | Philip Morris Products S.A. | Systems and methods for quantifying the impact of biological perturbations |
| CN104508671B (zh) | 2012-06-21 | 2018-10-19 | 菲利普莫里斯生产公司 | 通过偏差校正和分类预测生成生物标记签名的系统和方法 |
| CN104584022B (zh) | 2012-06-21 | 2018-11-16 | 菲利普莫里斯生产公司 | 一种生成生物标记签名的系统及方法 |
| EP2989578B1 (en) * | 2013-04-23 | 2023-03-29 | Philip Morris Products S.A. | Systems and methods for using mechanistic network models in systems toxicology |
| CN105940421B (zh) * | 2013-08-12 | 2020-09-01 | 菲利普莫里斯生产公司 | 用于生物网络的人群验证的系统和方法 |
| US10842444B2 (en) | 2013-09-13 | 2020-11-24 | Philip Morris Products S.A. | Systems and methods for evaluating perturbation of xenobiotic metabolism |
| EP3158487A1 (en) * | 2014-06-20 | 2017-04-26 | Connecticut Children's Medical Center | Automated cell culture system and corresponding methods |
| CN104298593B (zh) * | 2014-09-23 | 2017-04-26 | 北京航空航天大学 | 一种基于复杂网络理论的soa系统可靠性评价方法 |
| KR101721528B1 (ko) * | 2015-05-28 | 2017-03-31 | 아주대학교산학협력단 | 질병 네트워크로부터 동반 발병 확률을 제공하는 방법 |
| US20170059554A1 (en) * | 2015-09-02 | 2017-03-02 | R. J. Reynolds Tobacco Company | Method for monitoring use of a tobacco product |
| CN107480467B (zh) * | 2016-06-07 | 2020-11-03 | 王�忠 | 一种判别或比较药物作用模块的方法 |
| CN107992720B (zh) * | 2017-12-14 | 2021-08-03 | 浙江工业大学 | 基于共表达网络的癌症靶向标志物测绘方法 |
| TWI693612B (zh) * | 2018-01-10 | 2020-05-11 | 國立臺灣師範大學 | 環境賀爾蒙與人體基因的關聯性運算平台 |
| CN108614536B (zh) * | 2018-06-11 | 2020-10-27 | 云南中烟工业有限责任公司 | 一种卷烟制丝工艺关键因素的复杂网络构建方法 |
| US11515005B2 (en) * | 2019-02-25 | 2022-11-29 | International Business Machines Corporation | Interactive-aware clustering of stable states |
| CN110706749B (zh) * | 2019-09-10 | 2022-06-10 | 至本医疗科技(上海)有限公司 | 一种基于组织器官分化层次关系的癌症类型预测系统和方法 |
| WO2023193935A1 (en) * | 2022-04-08 | 2023-10-12 | NEC Laboratories Europe GmbH | Method and system for predicting gene expression perturbations |
| JPWO2024019081A1 (https=) | 2022-07-22 | 2024-01-25 | ||
| CN115798598B (zh) * | 2022-11-16 | 2023-11-14 | 大连海事大学 | 一种基于超图的miRNA-疾病关联预测模型及方法 |
| CN115861275B (zh) * | 2022-12-26 | 2024-02-06 | 中南大学 | 细胞计数方法、装置、终端设备及介质 |
| CN118072926B (zh) * | 2024-04-17 | 2024-07-30 | 吉林大学 | 医疗机构院科两级感染风险评估系统及方法 |
| CN118899037A (zh) * | 2024-10-08 | 2024-11-05 | 福建医科大学附属第一医院 | 太空电离辐射关键分子的识别方法及系统 |
Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050086035A1 (en) * | 2003-09-02 | 2005-04-21 | Pioneer Hi-Bred International, Inc. | Computer systems and methods for genotype to phenotype mapping using molecular network models |
| US20070198653A1 (en) * | 2005-12-30 | 2007-08-23 | Kurt Jarnagin | Systems and methods for remote computer-based analysis of user-provided chemogenomic data |
| US20090326897A1 (en) * | 2006-07-11 | 2009-12-31 | Bayer Technology Services Gmbh | Method for determining the behavior of a biological system after a reversible perturbation |
| US20100216660A1 (en) * | 2006-12-19 | 2010-08-26 | Yuri Nikolsky | Novel methods for functional analysis of high-throughput experimental data and gene groups identified therefrom |
Family Cites Families (6)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US6983227B1 (en) * | 1995-01-17 | 2006-01-03 | Intertech Ventures, Ltd. | Virtual models of complex systems |
| US20030130798A1 (en) * | 2000-11-14 | 2003-07-10 | The Institute For Systems Biology | Multiparameter integration methods for the analysis of biological networks |
| WO2005003368A2 (de) * | 2003-07-04 | 2005-01-13 | Siemens Aktiengesellschaft | Verfahren, computerprogramm mit programmcode-mitteln und computerprogramm-produkt zur analyse eines regulatorischen genetischen netzwerks einer zelle |
| CA2546391A1 (en) * | 2003-11-24 | 2005-06-09 | Gene Logic, Inc. | Methods for molecular toxicology modeling |
| JP2008528975A (ja) * | 2005-01-24 | 2008-07-31 | ザ・ボード・オブ・トラスティーズ・オブ・ザ・レランド・スタンフォード・ジュニア・ユニバーシティ | 細胞シグナル伝達系のモデリングのためのベイジアンネットワークの使用 |
| DE102005030136B4 (de) * | 2005-06-28 | 2010-09-23 | Siemens Ag | Verfahren zur rechnergestützten Simulation von biologischen RNA-Interferenz-Experimenten |
-
2012
- 2012-09-07 WO PCT/EP2012/003760 patent/WO2013034300A2/en not_active Ceased
- 2012-09-07 CN CN201280043499.3A patent/CN103782301B/zh active Active
- 2012-09-07 US US14/342,689 patent/US20140214336A1/en not_active Abandoned
- 2012-09-07 CN CN201710237916.2A patent/CN107391961B/zh active Active
- 2012-09-07 JP JP2014528898A patent/JP6138793B2/ja not_active Expired - Fee Related
- 2012-09-07 EP EP12766580.0A patent/EP2754075A2/en not_active Ceased
-
2016
- 2016-12-13 JP JP2016241117A patent/JP6407242B2/ja active Active
-
2018
- 2018-03-22 JP JP2018054384A patent/JP2018116729A/ja not_active Withdrawn
Patent Citations (4)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20050086035A1 (en) * | 2003-09-02 | 2005-04-21 | Pioneer Hi-Bred International, Inc. | Computer systems and methods for genotype to phenotype mapping using molecular network models |
| US20070198653A1 (en) * | 2005-12-30 | 2007-08-23 | Kurt Jarnagin | Systems and methods for remote computer-based analysis of user-provided chemogenomic data |
| US20090326897A1 (en) * | 2006-07-11 | 2009-12-31 | Bayer Technology Services Gmbh | Method for determining the behavior of a biological system after a reversible perturbation |
| US20100216660A1 (en) * | 2006-12-19 | 2010-08-26 | Yuri Nikolsky | Novel methods for functional analysis of high-throughput experimental data and gene groups identified therefrom |
Non-Patent Citations (1)
| Title |
|---|
| Gene Interaction Network Suggests Dioxin Induces a Significant Linkage between Aryl Hydrocarbon Receptor and Retinoic Acid Receptor Beta;Hiroyoshi Toyoshiba等;《Environmental Health Perspectives》;20040831;第112卷(第12期);第1217-1224页 * |
Also Published As
| Publication number | Publication date |
|---|---|
| JP2014532205A (ja) | 2014-12-04 |
| CN107391961B (zh) | 2020-11-17 |
| JP2017073163A (ja) | 2017-04-13 |
| EP2754075A2 (en) | 2014-07-16 |
| US20140214336A1 (en) | 2014-07-31 |
| CN107391961A (zh) | 2017-11-24 |
| WO2013034300A3 (en) | 2013-09-19 |
| CN103782301A (zh) | 2014-05-07 |
| JP6138793B2 (ja) | 2017-05-31 |
| JP2018116729A (ja) | 2018-07-26 |
| WO2013034300A2 (en) | 2013-03-14 |
| JP6407242B2 (ja) | 2018-10-17 |
Similar Documents
| Publication | Publication Date | Title |
|---|---|---|
| CN103782301B (zh) | 用于基于网络的生物活性评估的系统与方法 | |
| JP6335260B2 (ja) | ネットワークに基づく生物学的活性評価のためのシステムおよび方法 | |
| US20210397995A1 (en) | Systems and methods relating to network-based biomarker signatures | |
| JP6138787B2 (ja) | トポロジーネットワーク攪乱を特徴づけるためのシステムおよび方法 | |
| CN105308604B (zh) | 在系统毒理学中使用机理网络模型的系统和方法 | |
| HK1197698A (en) | Systems and methods for network-based biological activity assessment | |
| HK1197698B (en) | Systems and methods for network-based biological activity assessment | |
| HK1198594B (en) | Systems and methods for characterizing topological network perturbations | |
| HK1211360B (zh) | 与基於网络的生物标记签名相关的系统和方法 | |
| HK1196688A (en) | Systems and methods for network-based biological activity assessment |
Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| C06 | Publication | ||
| PB01 | Publication | ||
| C10 | Entry into substantive examination | ||
| SE01 | Entry into force of request for substantive examination | ||
| REG | Reference to a national code |
Ref country code: HK Ref legal event code: DE Ref document number: 1197698 Country of ref document: HK |
|
| GR01 | Patent grant | ||
| GR01 | Patent grant | ||
| REG | Reference to a national code |
Ref country code: HK Ref legal event code: GR Ref document number: 1197698 Country of ref document: HK |