CA2734519C - Markers and methods for assessing and treating ulcerative colitis and related disorders using a 20 gene panel - Google Patents

Markers and methods for assessing and treating ulcerative colitis and related disorders using a 20 gene panel Download PDF

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Publication number
CA2734519C
CA2734519C CA2734519A CA2734519A CA2734519C CA 2734519 C CA2734519 C CA 2734519C CA 2734519 A CA2734519 A CA 2734519A CA 2734519 A CA2734519 A CA 2734519A CA 2734519 C CA2734519 C CA 2734519C
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sample
seq
nos
nucleic acid
kit
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French (fr)
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CA2734519A1 (en
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Xilin Katherine Li
Frederic Baribaud
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Janssen Biotech Inc
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Centocor Ortho Biotech Inc
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    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
    • C12Q1/6883—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for diseases caused by alterations of genetic material
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/106—Pharmacogenomics, i.e. genetic variability in individual responses to drugs and drug metabolism
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/156—Polymorphic or mutational markers
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q2600/00—Oligonucleotides characterized by their use
    • C12Q2600/158—Expression markers
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/06—Gastro-intestinal diseases
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/06—Gastro-intestinal diseases
    • G01N2800/065—Bowel diseases, e.g. Crohn, ulcerative colitis, IBS
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2800/00—Detection or diagnosis of diseases
    • G01N2800/52—Predicting or monitoring the response to treatment, e.g. for selection of therapy based on assay results in personalised medicine; Prognosis

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  • Life Sciences & Earth Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Organic Chemistry (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • General Health & Medical Sciences (AREA)
  • Urology & Nephrology (AREA)
  • Microbiology (AREA)
  • Pathology (AREA)
  • Genetics & Genomics (AREA)
  • Wood Science & Technology (AREA)
  • Zoology (AREA)
  • Biochemistry (AREA)
  • Hematology (AREA)
  • Biomedical Technology (AREA)
  • Biotechnology (AREA)
  • General Engineering & Computer Science (AREA)
  • Cell Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biophysics (AREA)
  • Food Science & Technology (AREA)
  • Medicinal Chemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Medicines Containing Antibodies Or Antigens For Use As Internal Diagnostic Agents (AREA)
CA2734519A 2008-08-29 2009-08-28 Markers and methods for assessing and treating ulcerative colitis and related disorders using a 20 gene panel Active CA2734519C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US9296608P 2008-08-29 2008-08-29
US61/092,966 2008-08-29
PCT/US2009/055323 WO2010025340A2 (en) 2008-08-29 2009-08-28 Markers and methods for assessing and treating ulcerative colitis and related disorders using a 20 gene panel

Publications (2)

Publication Number Publication Date
CA2734519A1 CA2734519A1 (en) 2010-03-04
CA2734519C true CA2734519C (en) 2018-11-13

Family

ID=41722298

Family Applications (1)

Application Number Title Priority Date Filing Date
CA2734519A Active CA2734519C (en) 2008-08-29 2009-08-28 Markers and methods for assessing and treating ulcerative colitis and related disorders using a 20 gene panel

Country Status (12)

Country Link
US (1) US20100069256A1 (https=)
EP (1) EP2329259B1 (https=)
JP (1) JP5586607B2 (https=)
CN (1) CN102165315B (https=)
AU (1) AU2009285644B2 (https=)
BR (1) BRPI0917379A2 (https=)
CA (1) CA2734519C (https=)
DK (1) DK2329259T3 (https=)
ES (1) ES2581774T3 (https=)
IL (1) IL211154A0 (https=)
RU (1) RU2011111748A (https=)
WO (1) WO2010025340A2 (https=)

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WO2008028044A2 (en) * 2006-08-30 2008-03-06 Centocor, Inc. Markers and methods for assessing and treating ulcerative colitis and related disorders using 66 gene panel
AU2012253422B2 (en) * 2011-05-10 2015-08-13 Société des Produits Nestlé S.A. Methods of disease activity profiling for personalized therapy management
CA2964857A1 (en) * 2014-10-20 2016-04-28 Nestec S.A. Methods for prediction of anti-tnf alpha drug levels and autoantibody formation
WO2016092045A1 (en) * 2014-12-11 2016-06-16 INSERM (Institut National de la Santé et de la Recherche Médicale) Methods and kits for predicting medically refractory acute severe colitis
GB2547406A (en) * 2015-11-20 2017-08-23 Folkersen Lasse Apparatus and methods of using of biomarkers for predicting TNF-inhibitor response
WO2017175228A1 (en) 2016-04-06 2017-10-12 Technion Research & Development Foundation Limited Infiltrating immune cell proportions predict anti-tnf response in colon biopsies
EP3458466B1 (en) 2016-05-20 2024-08-07 Cedars-Sinai Medical Center Diagnosis of inflammatory bowel disease based on genes
JP2019520071A (ja) * 2016-06-14 2019-07-18 アンスティチュ ナショナル ドゥ ラ サンテ エ ドゥ ラ ルシェルシュ メディカル 急性重症大腸炎の処置応答を予測するための方法
EP3612843A1 (en) 2017-05-31 2020-02-26 Prometheus Biosciences, Inc. Methods for assessing mucosal healing in crohn's disease patients
US20210262032A1 (en) * 2018-07-15 2021-08-26 Rambam Med-Tech Ltd. Determining responders to inflammation treatment
CA3116005A1 (en) * 2018-10-19 2020-04-23 Children's Hospital Medical Center Use of mucosal transcriptomes for assessing severity of ulcerative colitis and responsiveness to treatment
EA202191354A1 (ru) * 2018-11-15 2021-08-11 Янссен Байотек, Инк. Способы и композиции для прогнозирования ответа на терапию воспалительного заболевания кишечника
CN114015689B (zh) * 2021-10-26 2024-06-07 江苏大学 一种特异性抑制GOS2基因表达的shRNA序列及其应用

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Also Published As

Publication number Publication date
WO2010025340A2 (en) 2010-03-04
CA2734519A1 (en) 2010-03-04
WO2010025340A3 (en) 2010-04-22
JP2012501452A (ja) 2012-01-19
EP2329259A4 (en) 2012-05-16
ES2581774T3 (es) 2016-09-07
RU2011111748A (ru) 2012-10-10
BRPI0917379A2 (pt) 2015-11-17
AU2009285644A1 (en) 2010-03-04
JP5586607B2 (ja) 2014-09-10
AU2009285644B2 (en) 2015-08-20
US20100069256A1 (en) 2010-03-18
EP2329259A2 (en) 2011-06-08
IL211154A0 (en) 2011-04-28
DK2329259T3 (en) 2016-05-09
CN102165315B (zh) 2014-06-18
EP2329259B1 (en) 2016-04-20
CN102165315A (zh) 2011-08-24

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