CA2667374A1 - Fingerprint analysis for a plurality of oligonucleotides - Google Patents

Fingerprint analysis for a plurality of oligonucleotides Download PDF

Info

Publication number
CA2667374A1
CA2667374A1 CA002667374A CA2667374A CA2667374A1 CA 2667374 A1 CA2667374 A1 CA 2667374A1 CA 002667374 A CA002667374 A CA 002667374A CA 2667374 A CA2667374 A CA 2667374A CA 2667374 A1 CA2667374 A1 CA 2667374A1
Authority
CA
Canada
Prior art keywords
oligonucleotide
sub
members
mass spectrum
oligonucleotides
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
CA002667374A
Other languages
English (en)
French (fr)
Inventor
Brian Elliott
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Integrated DNA Technologies Inc
Original Assignee
Individual
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Individual filed Critical Individual
Publication of CA2667374A1 publication Critical patent/CA2667374A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/68—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving proteins, peptides or amino acids
    • G01N33/6803—General methods of protein analysis not limited to specific proteins or families of proteins
    • G01N33/6848—Methods of protein analysis involving mass spectrometry
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6869—Methods for sequencing
    • C12Q1/6872—Methods for sequencing involving mass spectrometry
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
    • G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
    • G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
    • G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
    • G01N33/5308—Immunoassay; Biospecific binding assay; Materials therefor for analytes not provided for elsewhere, e.g. nucleic acids, uric acid, worms, mites
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00—Chemistry: analytical and immunological testing
    • Y10T436/14—Heterocyclic carbon compound [i.e., O, S, N, Se, Te, as only ring hetero atom]
    • Y10T436/142222—Hetero-O [e.g., ascorbic acid, etc.]
    • Y10T436/143333—Saccharide [e.g., DNA, etc.]
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y10—TECHNICAL SUBJECTS COVERED BY FORMER USPC
    • Y10T—TECHNICAL SUBJECTS COVERED BY FORMER US CLASSIFICATION
    • Y10T436/00—Chemistry: analytical and immunological testing
    • Y10T436/24—Nuclear magnetic resonance, electron spin resonance or other spin effects or mass spectrometry

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Molecular Biology (AREA)
  • Immunology (AREA)
  • Physics & Mathematics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Hematology (AREA)
  • Urology & Nephrology (AREA)
  • Biomedical Technology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Biochemistry (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Microbiology (AREA)
  • Organic Chemistry (AREA)
  • Analytical Chemistry (AREA)
  • Biophysics (AREA)
  • Zoology (AREA)
  • Food Science & Technology (AREA)
  • Cell Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • General Physics & Mathematics (AREA)
  • Pathology (AREA)
  • Medicinal Chemistry (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Wood Science & Technology (AREA)
  • Tropical Medicine & Parasitology (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Other Investigation Or Analysis Of Materials By Electrical Means (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
CA002667374A 2006-10-26 2007-10-23 Fingerprint analysis for a plurality of oligonucleotides Abandoned CA2667374A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US86306306P 2006-10-26 2006-10-26
US60/863,063 2006-10-26
PCT/US2007/082197 WO2008070314A2 (en) 2006-10-26 2007-10-23 Fingerprint analysis for a plurality of oligonucleotides

Publications (1)

Publication Number Publication Date
CA2667374A1 true CA2667374A1 (en) 2008-06-12

Family

ID=39492927

Family Applications (1)

Application Number Title Priority Date Filing Date
CA002667374A Abandoned CA2667374A1 (en) 2006-10-26 2007-10-23 Fingerprint analysis for a plurality of oligonucleotides

Country Status (6)

Country Link
US (2) US7604998B2 (enExample)
EP (1) EP2089706A4 (enExample)
JP (1) JP2010508024A (enExample)
AU (1) AU2007329729A1 (enExample)
CA (1) CA2667374A1 (enExample)
WO (1) WO2008070314A2 (enExample)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
JP2010508024A (ja) * 2006-10-26 2010-03-18 インテグレイテッド ディーエヌエイ テクノロジーズ インコーポレイテッド 複数のオリゴヌクレオチド用のフィンガープリント分析
WO2011137368A2 (en) 2010-04-30 2011-11-03 Life Technologies Corporation Systems and methods for analyzing nucleic acid sequences
US9268903B2 (en) 2010-07-06 2016-02-23 Life Technologies Corporation Systems and methods for sequence data alignment quality assessment

Family Cites Families (13)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5605798A (en) * 1993-01-07 1997-02-25 Sequenom, Inc. DNA diagnostic based on mass spectrometry
US5625184A (en) * 1995-05-19 1997-04-29 Perseptive Biosystems, Inc. Time-of-flight mass spectrometry analysis of biomolecules
US6002127A (en) * 1995-05-19 1999-12-14 Perseptive Biosystems, Inc. Time-of-flight mass spectrometry analysis of biomolecules
IT1295226B1 (it) * 1997-10-14 1999-05-04 Magneti Marelli Spa Impianto per la produzione di manufatti pressocolati o stampati ad iniezione impiegando anime in sale.
US6723564B2 (en) * 1998-05-07 2004-04-20 Sequenom, Inc. IR MALDI mass spectrometry of nucleic acids using liquid matrices
US6306643B1 (en) * 1998-08-24 2001-10-23 Affymetrix, Inc. Methods of using an array of pooled probes in genetic analysis
US6613509B1 (en) * 1999-03-22 2003-09-02 Regents Of The University Of California Determination of base (nucleotide) composition in DNA oligomers by mass spectrometry
US20040126772A1 (en) * 2001-12-06 2004-07-01 Yoshihide Hayashizaki Method for maldi-tof-ms analysis and/or sequencing of oligonucleotides
DE10305612B4 (de) * 2003-02-11 2005-04-07 Ashland-Südchemie-Kernfest GmbH Beschichtungsmassen für Gusskerne
DE10359547B3 (de) * 2003-12-17 2005-03-03 Emil Müller GmbH Wasserlösliche Salzkerne
US20070207555A1 (en) * 2005-02-03 2007-09-06 Cesar Guerra Ultra-sensitive detection systems using multidimension signals
US7783429B2 (en) * 2005-02-18 2010-08-24 Charite'-Universitatsmedizin Berlin Peptide sequencing from peptide fragmentation mass spectra
JP2010508024A (ja) * 2006-10-26 2010-03-18 インテグレイテッド ディーエヌエイ テクノロジーズ インコーポレイテッド 複数のオリゴヌクレオチド用のフィンガープリント分析

Also Published As

Publication number Publication date
US7855080B2 (en) 2010-12-21
US20080102531A1 (en) 2008-05-01
WO2008070314A2 (en) 2008-06-12
US20090325306A1 (en) 2009-12-31
WO2008070314A3 (en) 2008-11-20
EP2089706A4 (en) 2011-05-04
JP2010508024A (ja) 2010-03-18
EP2089706A2 (en) 2009-08-19
AU2007329729A1 (en) 2008-06-12
US7604998B2 (en) 2009-10-20

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Legal Events

Date Code Title Description
FZDE Discontinued

Effective date: 20131023