CA2374505A1 - Methods for display of heterodimeric proteins on filamentous phage using pvii and pix, compositions, vectors and combinatorial libraries - Google Patents

Methods for display of heterodimeric proteins on filamentous phage using pvii and pix, compositions, vectors and combinatorial libraries Download PDF

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Publication number
CA2374505A1
CA2374505A1 CA002374505A CA2374505A CA2374505A1 CA 2374505 A1 CA2374505 A1 CA 2374505A1 CA 002374505 A CA002374505 A CA 002374505A CA 2374505 A CA2374505 A CA 2374505A CA 2374505 A1 CA2374505 A1 CA 2374505A1
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phage
filamentous phage
protein
library
vector
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CA2374505C (en
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Kim D. Janda
Peter Wirsching
Richard A. Lerner
Changshou Gao
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Scripps Research Institute
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    • CCHEMISTRY; METALLURGY
    • C40COMBINATORIAL TECHNOLOGY
    • C40BCOMBINATORIAL CHEMISTRY; LIBRARIES, e.g. CHEMICAL LIBRARIES
    • C40B40/00Libraries per se, e.g. arrays, mixtures
    • C40B40/02Libraries contained in or displayed by microorganisms, e.g. bacteria or animal cells; Libraries contained in or displayed by vectors, e.g. plasmids; Libraries containing only microorganisms or vectors
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/10Processes for the isolation, preparation or purification of DNA or RNA
    • C12N15/1034Isolating an individual clone by screening libraries
    • C12N15/1037Screening libraries presented on the surface of microorganisms, e.g. phage display, E. coli display
    • BPERFORMING OPERATIONS; TRANSPORTING
    • B01PHYSICAL OR CHEMICAL PROCESSES OR APPARATUS IN GENERAL
    • B01JCHEMICAL OR PHYSICAL PROCESSES, e.g. CATALYSIS OR COLLOID CHEMISTRY; THEIR RELEVANT APPARATUS
    • B01J2219/00Chemical, physical or physico-chemical processes in general; Their relevant apparatus
    • B01J2219/00274Sequential or parallel reactions; Apparatus and devices for combinatorial chemistry or for making arrays; Chemical library technology
    • B01J2219/00718Type of compounds synthesised
    • B01J2219/0072Organic compounds

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  • Bioinformatics & Cheminformatics (AREA)
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  • Micro-Organisms Or Cultivation Processes Thereof (AREA)
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  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
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Abstract

The invention describes the display of exogenous polypeptides on filamentous phage using a fusion between the exogenous polypeptide and phage pVII or pIX proteins. In particular, phage particles and phagemid vectors are described for expression and display of heterodimeric proteins such as antibody Fv heterodimers in combinatorial libraries, and uses thereof.

Claims (27)

1. A filamentous phage encapsulating a genome encoding a fusion polypeptide, wherein said polypeptide comprises an exogenous polypeptide fused to the amino terminus of a filamentous phage pVII or pIX protein.
2. The filamentous phage of claim 1 wherein said phage comprises said fusion polypeptide on the phage particle surface.
3. The filamentous phage of claim 1 wherein said fusion polypeptide is a first fusion polypeptide fused to said pVII
protein and said genome further encodes a second fusion polypeptide, wherein said second fusion polypeptide comprises a second exogenous polypeptide fused to the amino terminus of said pIX protein.
4. The filamentous phage of claim 3 wherein said phage comprises said first and second fusion polypeptides on the phage particle surface.
5. The filamentous phage of claim 1 wherein said exogenous polypeptide is selected from the group consisting of an immunoglobulin heavy chain variable domain (V H), an immunoglobulin light chain variable domain (V L), a synthetic polypeptide and a single chain antibody (scFv).
6. The filamentous phage of claim 3 wherein said first and second exogenous polypeptides comprise the first and second polypeptides of a heterodimeric protein complex.
7. The filamentous phage of claim 6 wherein said heterodimeric protein complex is an immunoglobulin Fv, a catalytic Fv, a receptor, a nucleic acid binding protein or an enzyme.
8. The filamentous phage of claim 1 wherein said genome is pCGMT or pCGMT-1b having a nucleotide sequence shown in SEQ
ID NO 19 or 20, respectively.
9. The filamentous phage of claim 7 wherein said Fv is 21H3-V H V L, 2H6-V H V L, or 92H2-V H V L.
10. A vector for expressing a fusion protein on the surface of a filamentous phage comprising a cassette for expressing said fusion protein that includes upstream and downstream translatable DNA sequences operatively linked via a sequence of nucleotides adapted for directional ligation of an insert DNA, said upstream sequence encoding a prokaryotic secretion signal, said downstream sequence encoding a filamentous phage protein selected from the group consisting of pVII and pIX protein, said translatable DNA
sequences operatively linked to a set of DNA expression signals for expression of said translatable DNA sequences as portions of said fusion polypeptide.
11. The vector of claim 10 further comprising a second cassette for expressing a second fusion protein on the surface of said filamentous phage, wherein said second cassette has the structure of said first cassette with the proviso that said first fusion protein expression cassette encodes pVII
protein and said second fusion protein expression cassette encodes pIX protein.
12. The vector of claim 10 wherein said vector is pCGMT
and has a nucleotide sequence shown in SEQ ID NO 19.
13. The vector of claim 11 wherein said vector is pCGMT-lb and has a nucleotide sequence shown in SEQ ID NO 20.
14. The vector of claim 10 wherein said prokaryotic secretion signal is a pelB or ompA secretion signal.
15. The vector of claim 10 further comprising a filamentous phage origin of replication.
16. The vector of claim 10 wherein said set of expression signals includes a promoter, a ribosome binding site, and at least one stop codon in frame with said downstream translatable DNA sequence.
17. A library of filamentous phage particles wherein each phage particle is according to claim 3.
18. A library of filamentous phage particles wherein each phage particle contains a vector according to claim 10.
19. A library of filamentous phage particles wherein each phage particle contains a vector according to claim 11.
20. The library of claim 18 wherein said library contains at least 10' different species of said vector.
21. The library of claim 19 wherein said library contains at least 10 7 different species of said vector.
22. A fusion protein comprising first and second polypeptides wherein said first polypeptide is an exogenous protein having a prokaryotic secretion signal and said second polypeptide is a filamentous phage pVII or pIX protein, whereby said exogenous protein is fused to the amino terminus of said filamentous phage protein.
23. The fusion protein of claim 22 wherein said exogenous polypeptide is selected from the group consisting of an immunoglobulin heavy chain variable domain (V H), an immunoglobulin light chain variable domain (V L), a synthetic polypeptide and a single chain antibody (scFv).
24. A method for changing the diversity of a library of filamentous phage particles comprising the steps of:
a) providing a library of filamentous phage particles according to claim 19;
b) contacting the provided library with a preselected ligand under conditions sufficient for members of the library to bind to the ligand and form a ligand-phage particle complex; and c) isolating phage particles in said complex away from non-bound library members to form a ligand-enriched library comprising phage particles having binding specificity for said preselected ligand.
25. The method of claim 24 wherein said preselected ligand is affixed to a solid support, said complex is in the solid phase and said isolating comprises the steps of:
i) washing the solid support to rinse non-bound library members from the solid support; and ii) eluting solid-phase bound phage particles to form said isolated phage particles.
26. The method of claim 25 wherein said eluting comprises contacting said solid-phase bound phage particles with an elution buffer having a pH of from pH 2 to pH 6.
27. The method of claim 25 wherein said elution comprises contacting said solid-phase bound phage particles with an elution buffer containing said preselected ligand.
CA2374505A 1999-05-25 2000-05-24 Methods for display of heterodimeric proteins on filamentous phage using pvii and pix, compositions, vectors and combinatorial libraries Expired - Fee Related CA2374505C (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US09/318,786 US6472147B1 (en) 1999-05-25 1999-05-25 Methods for display of heterodimeric proteins on filamentous phage using pVII and pIX, compositions, vectors and combinatorial libraries
US09/318,786 1999-05-25
PCT/US2000/014433 WO2000071694A1 (en) 1999-05-25 2000-05-24 METHODS FOR DISPLAY OF HETERODIMERIC PROTEINS ON FILAMENTOUS PHAGE USING pVII and pIX, COMPOSITIONS, VECTORS AND COMBINATORIAL LIBRARIES

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CA2374505A1 true CA2374505A1 (en) 2000-11-30
CA2374505C CA2374505C (en) 2011-10-25

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EP (1) EP1185636B1 (en)
AT (1) ATE317008T1 (en)
AU (1) AU782349B2 (en)
CA (1) CA2374505C (en)
DE (1) DE60025824T2 (en)
DK (1) DK1185636T3 (en)
ES (1) ES2256015T3 (en)
PT (1) PT1185636E (en)
WO (1) WO2000071694A1 (en)

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AU782349B2 (en) 2005-07-21
EP1185636A4 (en) 2004-10-06
DE60025824D1 (en) 2006-04-13
CA2374505C (en) 2011-10-25
US20030186322A1 (en) 2003-10-02
US6472147B1 (en) 2002-10-29
PT1185636E (en) 2006-05-31
DE60025824T2 (en) 2006-09-07
WO2000071694A1 (en) 2000-11-30
ES2256015T3 (en) 2006-07-16
AU5290000A (en) 2000-12-12
ATE317008T1 (en) 2006-02-15
DK1185636T3 (en) 2006-04-18

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