BR112016015033B1 - Método para selecionar indivíduos vegetais - Google Patents
Método para selecionar indivíduos vegetais Download PDFInfo
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- BR112016015033B1 BR112016015033B1 BR112016015033-3A BR112016015033A BR112016015033B1 BR 112016015033 B1 BR112016015033 B1 BR 112016015033B1 BR 112016015033 A BR112016015033 A BR 112016015033A BR 112016015033 B1 BR112016015033 B1 BR 112016015033B1
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Classifications
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- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
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- A—HUMAN NECESSITIES
- A01—AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
- A01H—NEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
- A01H1/00—Processes for modifying genotypes ; Plants characterised by associated natural traits
- A01H1/04—Processes of selection involving genotypic or phenotypic markers; Methods of using phenotypic markers for selection
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6876—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes
- C12Q1/6888—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms
- C12Q1/6895—Nucleic acid products used in the analysis of nucleic acids, e.g. primers or probes for detection or identification of organisms for plants, fungi or algae
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/20—Allele or variant detection, e.g. single nucleotide polymorphism [SNP] detection
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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- G16B40/00—ICT specially adapted for biostatistics; ICT specially adapted for bioinformatics-related machine learning or data mining, e.g. knowledge discovery or pattern finding
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
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- G16B5/00—ICT specially adapted for modelling or simulations in systems biology, e.g. gene-regulatory networks, protein interaction networks or metabolic networks
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/124—Animal traits, i.e. production traits, including athletic performance or the like
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/13—Plant traits
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q2600/00—Oligonucleotides characterized by their use
- C12Q2600/156—Polymorphic or mutational markers
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- G—PHYSICS
- G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
- G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
- G16B20/00—ICT specially adapted for functional genomics or proteomics, e.g. genotype-phenotype associations
- G16B20/40—Population genetics; Linkage disequilibrium
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Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201361921216P | 2013-12-27 | 2013-12-27 | |
| US61/921,216 | 2013-12-27 | ||
| PCT/US2014/071889 WO2015100236A1 (en) | 2013-12-27 | 2014-12-22 | Improved molecular breeding methods |
Publications (2)
| Publication Number | Publication Date |
|---|---|
| BR112016015033A2 BR112016015033A2 (https=) | 2017-08-08 |
| BR112016015033B1 true BR112016015033B1 (pt) | 2022-09-06 |
Family
ID=52432916
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| BR112016015033-3A BR112016015033B1 (pt) | 2013-12-27 | 2014-12-22 | Método para selecionar indivíduos vegetais |
Country Status (11)
| Country | Link |
|---|---|
| US (1) | US12272429B2 (https=) |
| EP (1) | EP3086633B1 (https=) |
| CN (1) | CN106028794B (https=) |
| AU (1) | AU2014370029B2 (https=) |
| BR (1) | BR112016015033B1 (https=) |
| CA (1) | CA2932507C (https=) |
| MX (1) | MX376045B (https=) |
| PH (1) | PH12016501255A1 (https=) |
| RU (1) | RU2016130577A (https=) |
| WO (1) | WO2015100236A1 (https=) |
| ZA (1) | ZA201603680B (https=) |
Families Citing this family (17)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| BR112017012891B1 (pt) * | 2014-12-18 | 2024-01-23 | Pioneer Hi-Bred International, Inc | Método de seleção de indivíduos |
| CN107278877B (zh) * | 2017-07-25 | 2019-10-22 | 山东省农业科学院玉米研究所 | 一种玉米出籽率的全基因组选择育种方法 |
| WO2019100018A1 (en) * | 2017-11-20 | 2019-05-23 | Inguran, Llc | Methods for increasing the rate of genetic progress and generating inbred lines in non-human mammals using gametes derived from embryos |
| MY197312A (en) * | 2017-11-22 | 2023-06-13 | Felda Agricultural Services Sdn Bhd | Method and system for selecting a plant breed |
| BR112021018005A2 (pt) * | 2019-03-11 | 2021-11-16 | Pioneer Hi Bred Int | Métodos e composições para imputação ou previsão de genótipo ou fenótipo |
| BR112021017998A2 (pt) | 2019-03-11 | 2021-11-16 | Pioneer Hi Bred Int | Métodos para a produção de plantas clonais |
| CA3131547A1 (en) | 2019-04-18 | 2020-10-22 | Pioneer Hi-Bred International, Inc. | Embryogenesis factors for cellular reprogramming of a plant cell |
| CN111291931B (zh) * | 2020-02-05 | 2022-05-20 | 傲网信息科技（厦门）有限公司 | 动物育种预测方法、装置、电子设备和存储介质 |
| US20230165204A1 (en) * | 2020-04-23 | 2023-06-01 | Inari Agriculture Technology, Inc. | Methods and systems for using envirotype in genomic selection |
| US20230154623A1 (en) * | 2021-11-17 | 2023-05-18 | Fetch Insurance Services, Inc. | Techniques for predicting diseases using simulations improved via machine learning |
| US20230274196A1 (en) | 2021-11-17 | 2023-08-31 | Fetch, Inc. | Techniques for displaying results of computationally improved simulations |
| CN114912040A (zh) * | 2022-04-19 | 2022-08-16 | 中国农业科学院作物科学研究所 | 育种处理方法、装置及计算机可读存储介质 |
| CN115316266B (zh) * | 2022-09-05 | 2023-09-08 | 新疆农垦科学院 | 一种作物群体改良和品种选育方法 |
| EP4508976A1 (en) * | 2023-08-17 | 2025-02-19 | Wageningen Universiteit | Method for selecting individuals and/or matings in a breeding population |
| CN118609649B (zh) * | 2024-01-17 | 2025-01-24 | 中国农业大学 | 一种多品种基因组联合遗传评估方法、设备及存储介质 |
| CN120877861B (zh) * | 2025-06-25 | 2026-02-13 | 北京丰捷一佳农业科技有限公司 | 一种玉米分子标记辅助回交育种电子模拟方法及系统 |
| CN121479153A (zh) * | 2026-01-08 | 2026-02-06 | 青岛极智生物技术有限公司 | 一种种质筛选方法 |
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| BR112013013225A2 (pt) | 2010-11-30 | 2020-09-24 | Syngenta Participations Ag | métodos para aumentar o ganho genético em uma população de reprodução |
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