AU754482B2 - Enhanced accumulation of trehalose in plants - Google Patents

Enhanced accumulation of trehalose in plants Download PDF

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AU754482B2
AU754482B2 AU48921/00A AU4892100A AU754482B2 AU 754482 B2 AU754482 B2 AU 754482B2 AU 48921/00 A AU48921/00 A AU 48921/00A AU 4892100 A AU4892100 A AU 4892100A AU 754482 B2 AU754482 B2 AU 754482B2
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plant
trehalose
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Oscar Johannes Maria Goddijn
Ronny Wilhelmus Hermanus Henrika Krutwagen
Teunis Cornelis Verwoerd
Eline Voogd
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Syngenta Mogen BV
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AUSTRALIA
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Class Int. Class Application Number: Lodged: Complete Specification Lodged: Accepted: Published: Priority Related Art: Name of Applicant: Mogen International N.V.
m~ijs, GJ- Actual Inventor(s): OSCAR JOHANNES MARIA GODDIJN, TEUNIS WILHELMUS HERMANUS HENRIKA KRUTWAGEN, CORNELIS VERWOERD, RONNY ELINE VOOGD Address for Service: PHILLIPS ORMONDE FITZPATRICK Patent and Trade Mark Attorneys 367 Collins Street Melbourne 3000 AUSTRALIA Invention Title: ENHANCED ACCUMULATION OF TREHALOSE IN PLANTS Our Ref: 622257 POF Code: 128064/325678 The following statement is a full description of this invention, including the best method of performing it known to applicant(s): -1- ENHANCED ACCUMULATION OF TREHALOSE IN PLANTS The present application is a divisional application from Australian Patent Application Number 10085/97 (719168), the entire disclosure of which is incorporated herein by reference.
FIELD OF THE INVENTION The invention relates to a method for the production of trehalose in plant cells, and plants. The invention is particularly related to a method for increasing the levels of trehalose accumulation in plants by inhibiting the degradation of trehalose by trehalase. The invention further comprises higher plants, preferably Angiospermae, and parts thereof, which as a result of such methods, contain relatively high levels of trehalose. The invention further relates to plant cells, plants or parts thereof according to the invention obtained after processing thereof.
STATE OF THE ART Trehalose is a general name given to D-glucosyl D-glucosides which comprise disaccharides based on two and B,B-linked glucose molecules. Trehalose, and especially a-trehalose alpha-Dglucopyranosyl(l-l)alpha-D-glucopyranoside is a widespread naturally occurring disaccharide. However, trehalose is not generally found in plants, apart from a few exceptions, such as the plant species Selaginella lepidophylla (Lycophyta) and Myrothamnus flabellifolia. Apart from these species, trehalose is found in root nodules of the Leguminosae (Spermatophytae, Angiospermae), wherein it is synthesized by bacteroids; the trehalose so produced is capable of diffusing into the root cells.
Apart from these accidental occurrences, plant species belonging to the Spermatophyta apparently lack the ability to produce and/or accumulate trehalose.
In International patent application WO 95/01446, filed on June 1994 in the name of MOGEN International NV, a method is described for providing plants not naturally capable of producing trehalose with the capacity to do so.
In spite of the absence of trehalose as a substrate in most higher plant species, the occurrence of trehalose-degrading activity has been reported for a considerable number of higher plant species, including those known to lack trehalose. The responsible activity could be attributed to a trehalase enzyme.
Reports suggest that trehalose, when fed to plant shoots grown in vitro is toxic or inhibitory to the growth of plant cells (Veluthambi K.
et al., 1981, Plant Physiol. Ea, 1369-1374). Plant cells producing low trehalase levels were found to be generally more sensitive to the adverse effects of trehalose, than plants exhibiting a higher level of trehalase activity. Trehalose-analogs, such as trehalose-amines were used to inhibit trehalase activity in shoots, making it possible to study the effects of trehalose fed to plant cells. Plant shoots which produce relatively high amounts of trehalase were adversely affected by the addition of trehalase inhibitors. Inhibition of trehalase activity in homogenates of callus and suspension culture of various Angiospermae using Validamycin is disclosed by Kendall et al., 1990, Phytochemistry 29, 2525-2582.
It is an object of the present invention to provide plants and plant parts capable of producing and accumulating trehalose.
SUMMARY OF THE INVENTION The invention provides a process for producing trehalose in plant cells capable of producing trehalase by growing plant cells having the genetic information required for the production of trehalose and trehalase, or cultivating a plant or a part thereof comprising such plant cells, characterised in that said plant cells are grown, or said plant or a part thereof, is cultivated in the presence of a trehalase inhibitor.
Preferred plants or plant parts or plant cells have been genetically S 25 altered so as to contain a chimeric trehalose phosphate synthase gene in 0 a plant expressible form. According to one embodiment said trehalose phosphate synthase gene comprises an open reading frame encoding trehalose phosphate synthase from E. coli in plant expressible form.
More preferred is a gene coding for a bipartite enzyme with both trehalose phosphate synthase and trehalose phosphate phosphatase activities.
According to a further aspect of the invention, plants have been genetically altered so as to produce trehalose preferentially in certain tissues or parts, such as (micro-)tubers of potato. According to one embodiment the open reading frame encoding trehalose phosphate synthase from E. coli is downstream of the potato patatin promoter, to provide for 3 preferential expression of the gene in tubers and micro-tubers of Solanum tuberosum.
According to another aspect of the invention the plants are cultivated in vitro, for example in hydroculture.
According to another preferred embodiment said trehalase inhibitor comprises validamycin A in a form suitable for uptake by said plant cells, preferably in a concentration between 100 nM and 10 mM, preferably between 0.1 and 1 mM, in aqueous solution.
Equally suitable said trehalase inhibition can be formed by transformation of said plant with the antisense gene to a gene encoding the information for trehalase.
Also suitable as trehalase inhibitor is the 86 kD protein from the american cockroach (Periplaneta americana). This protein can be administered to a plant in a form suitable for uptake, and also it is 15 possible that the plants are transformed with DNA coding for said protein.
The invention further provides plants and plant parts which accumulate trehalose in an amount above 0.01 (fresh weight), preferably of a Solanaceae species, in particular Solanum tuberosum or 20 Nicotiana tabacum, in particular a micro-tuber of Solanum tuberosum "containing trehalose.
The invention also comprises the use of a plant, or plant part, according to the invention for extracting trehalose, as well as the use thereof in a process of forced extraction of water from said plant or plant part. According to yet another embodiment of the invention a chimaeric plant expressible gene is provided, comprising in sequence a transcription initiation region obtainable from a gene, preferentially expressed in a plant part, particularly the patatin gene from Solanum tuberosum, a 5'-untranslated leader, an open reading frame encoding a trehalose phosphate synthase activity, and downstream of said open reading frame a transcriptional terminator region.
According to yet another embodiment of the invention a chimaeric plant expressible gene is provided, comprising in sequence a transcription initiation region obtainable from a gene, preferentially expressed in a plant part, particularly the patatin gene from Solanum tuberosum, a 5'-untranslated leader, an open reading frame encoding a 4
I'
trehalase coupled in the antisense orientation, and downstream of said open reading frame a transcriptional terminator region. A preferred plant expressible gene according to the invention is one wherein said transcriptional terminator region is obtainable from the proteinase inhibitor-II gene of Solanum tuberosum. The invention also provided vectors and recombinant plant genomes comprising a chimaeric plant expressible gene according to the invention, as well as a plant cell having a recombinant genome,- a plant or a part thereof, consisting essentially of cells. A further preferred plant species according to this aspect is Solanum tuberosum, and a micro-tuber thereof.
The invention further provides a process for obtaining trehalose, comprising the steps of growing plant cells according to the invention or cultivating a plant according S to the invention and extracting trehalose from said plant cells, plants or parts.
The following figures further illustrate the invention.
Throughout the description and claims of this specification the word "comprise" 15 and variations of that word, such as "comprises" and "comprising", are not intended to exclude other additives or components or integers or steps.
DESCRIPTION OF THE FIGURES Figure 1. Schematic representation of binary vector pMOG845.
Figure 2. Schematic representation of multi-copy vector pMOG1192.
20 Figure 3. Alignments for maximal amino acid similarities of neutral trehalase from S. cerevisiae with periplasmatic trehalase from E. coli, small intestinal trehalase from rabbit and trehalase from pupal midgut of the silkworm, Bombyx mori. Identical residues among all trehalase enzymes are indicated in bold italics typeface.
Conserved regions of the amino acid sequences were aligned to give the best fit.
Gap's in the amino acid sequence are represented by dashes.
Positions of degenerated primers based on conserved amino acids are indicated by dashed arrows.
Figure 4. Alignment for maximal amino acid similarity of trehalases derived from E. coli (Ecoli2treh Ecolitreha), silkworm (Bommotreha), yellow mealworm (Tenmotreha), rabbit (Rabbitreha), Solanum tuberosum cv. Kardal (Potatotreha), and S. cerevisiae (Yeasttreha). Gap's in the amino C:IWINWORDGAY440DLE7E\473T.'.DC acid sequence are represented by dots.
Figure 5. Trehalase activity in leaf samples of Nicotiana tabacum cv.
Samsun NN. Non-transgenic control plants are indicated by letters a-1, plants transgenic for pMOG1078 are indicated by numbers.
Figure 6. Trehalose accumulation in microtubers induced on stem segments derived from Solanum tubersosum cv. Kardal plants transgenic for both pMOG 845 (patatin driven TPSE.coli expression) and pMOG1027 antisense-trehalase expression). N indicates the total number of transgenic lines screened. Experiments were performed in duplicate resulting in two values: a and b. ND: not determined.
DETAILED DESCRIPTION OF THE INVENTION S. 15 According to the present invention it has been found that the accumulation of an increased level of trehalose in plants and plant parts is feasible. This important finding can be exploited by adapting plant systems to produce and/or accumulate high levels of trehalose at lower cost.
**20 According to one aspect of the invention the accumulation of increased levels of trehalose is achieved by inhibiting endogenous trehalases. Inhibition of trehalases can be performed basically in two ways: by administration of trehalase inhibitors exogenously, and by the production of trehalase inhibitors endogenously, for instance by transforming the plants with DNA sequences coding for trehalase inhibitors.
This inhibition can be equally well applied to plants which are transformed with enzymes which enable the production of trehalose, but also to plants which are able to synthesize trehalose naturally.
According to this first embodiment of the invention, trehalase inhibitors are administered to the plant system exogenously. Examples of trehalase inhibitors that may be used in such a process according to the invention are trehazolin produced in Micromonospora, strain SANK 62390 (Ando et al., 1991, J. Antibiot. 4A, 1165-1168), validoxylamine A, B, G, D-gluco-Dihydrovalidoxylamine A, L-ido-Dihydrovalidoxylamin A, Deoxynojirimycin (Kameda et al., 1987, J. Antibiot. A4(4), 563-565), 6 epi-trehazolin (Trehalostatin) (Kobayashi Y. et al., 1994, J. Antiobiot.
47, 932-938), castanospermin (Salleh H.M. Honek J.F. March 1990, FEBS 262(2), 359-362) and the 86kD protein from the american cockroach (Periplaneta americana) (Hayakawa et al., 1989, J. Biol. Chem. 264(27), 16165-16169).
A preferred trehalase inhibitor according to the invention is validamycin A (1,5,6-trideoxy-3-o-B-D-glucopyranosyl-5-(hydroxymethyl)-1-[[4,5,6trihydroxy-3-(hydroxymenthyl)-2-cyclohexen-l-yl]amino]-D-chiro-inositol).
Trehalase inhibitors are administered to plants or plant parts, or plant cell cultures, in a form suitable for uptake by the plants, plant parts or cultures. Typically the trehalase inhibitor is in the form of an aqueous solution of between 100 nM and 10 mM of active ingredient, preferably between 0.1 and 1 mM. Aqueous solutions may be applied to plants or plant parts by spraying on leaves, watering, adding it to the S. 15 medium of a hydroculture, and the like. Another suitable formulation of validamycin is solacol, a commercially available agricultural formulation (Takeda Chem. Indust., Tokyo).
Alternatively, or in addition to using exogenously administered trehalase inhibitors, trehalase inhibitors may be provided by introducing 20 the genetic information coding therefor. One form of such in-built trehalase inhibitor may consist of a genetic construct causing the production of RNA that is sufficiently complementary to endogenous RNA encoding for trehalase to interact with said endogenous transcript, thereby inhibiting the expression of said transcript. This so-called "antisense approach" is well known in the art (vide inter alia EP 0 240 208 A and the Examples to inhibit SPS disclosed in WO 95/01446).
A gene coding for trehalase has been isolated from a potato cDNA library and sequenced. The predicted amino acid sequence of trehalase as shown in SEQIDNO:10 is derived from the nucleotide sequence depicted in SEQIDNO: 9. A comparison of this sequence with known non-plant trehalase sequences learns that homology is scant. It is therefor questionable if such trehalase sequences used in an antisense approach are capable of inhibiting trehalase expression in planta.
Of course the most preferred embodiment of the invention is obtained by transforming a plant with the antisense trehalase gene which matches exactly with the endogenous trehalase gene. However, sequences 7 which have a high degree of homology can also be used. Thus, the antisense trehalase gene to be used for the transformation of potato will be directed against the nucleotide sequence depicted in SEQIDNO: 9.
It is also demonstrated in this application that the potato trehalase sequence can also be used to inhibit trehalase expression in tomato since the potato sequence is highly homologous to the tomato trehalase sequence. Thus, it is envisaged that the potato sequence is usable at least in closely related species, but maybe also in other plants. This is even more the case, considering that it is usually enough to express only part of the homologous gene in the antisense orientation, in order toachieve effective inhibition of expression of the endogenous trehalase (vide Van der Krol et al., 1990, Plant Molecular Biology, 14, 457-466) Furthermore, it is shown in this application that the potato trehalase sequence can be used for the detection of homology in other species.
Trehalase gene sequences of other plants can be elucidated using several different strategies. One of the strategies is to use the isolated potato cDNA clone as a probe to screen a cDNA library containing the cDNA of the desired plant species. Positive reacting clones can then be isolated and subcloned into suitable vectors.
20 A second strategy to identify such genes is by purifying the proteins which are involved in trehalose degradation.
An example for such a strategy is the purification of a protein with acid invertase activity from potato (Solanum tuberosum tubers (Burch et al., Phytochemistry, Vol..1, No.6, pp. 1901-1904, 1992). The obtained protein preparation also exhibits trehalose hydrolysing activity.
Disaccharide hydrolysing activity of protein preparations obtained after purification steps can be monitored as described by Dahlqvist (Analytical Biochemistry 1, 18-25, 1964).
After purifying the protein(s) with trehalose hydrolysing activity to homogeneity, the N-terminal amino acid sequence or the sequence of internal fragments after protein digestion is determined. These sequences enable the design of oligonucleotide probes which are used in a polymerase chain reaction (PCR) or hybridization experiments to isolate the corresponding mRNAs using standard molecular cloning techniques.
Alternatively, degenerated primers can be designed based on conserved sequences present in trehalase genes isolated from other species. These primers are used in a PCR strategy to amplify putative trehalase genes. Based on sequence information or Southern blotting, trehalase PCR fragments can be identified and the corresponding cDNA's isolated.
An isolated cDNA encoding a trehalose degrading enzyme is subsequently fused to a promoter sequence in such a way that transcription results in the synthesis of antisense mRNA.
Another form of such an in-built trehalase inhibitor may consist of a genetic construct causing the production of a protein that is able to inhibit trehalase activity in plants. A proteinaceous inhibitor of trehalase has been isolated and purified from the serum of resting adult american cockroaches (Periplaneta americana) (Hayakawa et al., supra).
This protein, of which the sequence partly has been described in said publication, can be made expressable by isolation of the gene coding for 15 the protein, fusion of the gene to a suitable promoter, and transformation of said fused gene into the plant according to standard molecular biological methods.
S" A promoter may be selected from any gene capable of driving transcription in plant cells.
S 20 If trehalose accumulation is only desired in certain plant parts, such as potato (mini-)tubers, the trehalase inhibitory DNA construct the antisense construct) comprises a promoter fragment that is preferentially expressed in (mini-)tubers, allowing endogenous trehalase levels in the remainder of the plant's cells to be substantially unaffected. Thus, any negative effects of trehalose to neighbouring plant cells due to trehalose diffusion, is counteracted by unaffected endogenous trehalase activity in the remainder of the plant.
In the Example illustrating the invention, wherein trehalose phosphate synthase is produced under the control of the patatin promoter fragment, also the trehalase-inhibitory construct may comprise a promoter fragment of the patatin gene.
Mutatis mutandis if trehalose is to be accumulated in tomato fruit, both a plant expressible trehalose phosphate synthase gene, which is at least expressed in the tomato fruit is to be used, as well as a plant expressible trehalase-inhibitory DNA construct, which should be expressed preferentially in the fruit, and preferably not, or not substantially, outside the fruit. An example of a promoter fragment that may be used to drive expression of DNA-constructs preferentially in tomato fruit is disclosed in EP 0 409 629 Al. Numerous modifications of this aspect of the invention, that do not depart from the scope of this invention, are readily envisaged by persons having ordinary skill in the art to which this invention pertains.
An alternative method to block the synthesis of undesired enzymatic activity such as caused by endogenous trehalase is the introduction into the genome of the plant host of an additional copy of said endogenous trehalase gene. It is often observed that the presence of a transgene copy of an endogenous gene silences the expression of both the endogenous gene and the transgene (EP 0 465 572 Al).
According to one embodiment of the invention accumulation of trehalose is brought about in plants wherein the capacity of producing 15 trehalose has been introduced by introduction of a plant expressible gene construct encoding trehalose phosphate synthase (TPS), see for instance •WO 95/06126.
Any trehalose phosphate synthase gene under the control of regulatory elements necessary for expression of DNA in plant cells, 20 either specifically or constitutively, may be used, as long as it is o*:o capable of producing active trehalose phosphate synthase activity. Most preferred are the trehalose phosphate synthase genes which also harbour a coding sequence for trehalose phosphate phosphatase activity, the so called bipartite enzymes. Such a gene, formerly only known to exist in yeast (see e.g. WO 93/17093), can also been found in most plants. This application describes the elucidation of such a gene from the sunflower 5 Helianthus annuus, while also evidence is given for the existence of a homologous gene in Nicotiana tabacum. It is believed that the use of a bipartite enzyme enhances the production of trehalose because it enables completion of the metabolic pathway from UDP-glucose and glucose-6phosphate into trehalose at one and the same site. Hence, the two-step synthesis is simplified into a one-step reaction, thereby increasing reaction speed and, subsequently, trehalose yield.
As genes involved in trehalose synthesis, especially genes coding for bipartite enzymes, become available from other sources these can be used in a similar way to obtain a plant expressible trehalose synthesizing gene according to the invention.
Sources for isolating trehalose synthesizing activities include microorganisms bacteria, yeast, fungi), but these genes can also be found in plants and animals.
The invention also encompasses nucleic acid sequences which have been obtained by modifying the nucleic acid sequence encoding enzymes active in the synthesis of trehalose by mutating one or more codons so that it results in amino acid changes in the encoded protein, as long as mutation of the amino acid sequence does not entirely abolish trehalose synthesizing activity.
According to another embodiment of the invention, plants are genetically altered to produce and accumulate trehalose in specific parts of the plant, which were selected on the basis of considerations such as substrate availability for the enzyme, insensitivity of the plant part to 15 any putative adverse effects of trehalose on plant cell functioning, and the like. A preferred site for trehalose synthesising enzyme expression are starch storage parts of plants. In particular potato tubers are considered to be suitable plant parts. A preferred promoter to achieve selective enzyme expression in microtubers and tubers of potato is 20 obtainable from the region upstream of the open reading frame of the patatin gene of potato (Solanum tuberosum).
Plants provide with a gene coding for trehalose phosphate synthase only may be further modified by introducing additional genes that encode o phosphatases that are capable of the conversion of trehalose phosphate into trehalose. At least in potato tubers or micro-tubers, potato leaves and tobacco leaves and roots, endogenous phosphatase activity appears to be present, so that the introduction of a trehalose phosphate phosphatase (TPP) gene is not an absolute requirement.
Preferred plant hosts among the Spermatophyta are the Angiospermae, notably the Dicotyledoneae, comprising inter alia the Solanaceae as a representative family, and the Monocotyledoneae, comprising inter alia the Gramineae as a representative family. Suitable host plants, as defined in the context of the present invention include plants (as well as parts and cells of said plants) and their progeny which have been genetically modified using recombinant DNA techniques to cause or enhance production of trehalose in the desired plant or plant organ; these plants may be used directly the plant species which produce edible parts) in processing or the trehalose may be extracted and/or purified from said host. Crops with edible parts according to the invention include those which have flowers such as cauliflower (Brassica oleracea), artichoke (Cynara scolymus), fruits such as apple (Malus, e.g. domesticus), banana (Musa, e.g. acuminata), berries (such as the currant, Ribes, e.g.
rubrum), cherries (such as the sweet cherry, Prunus, e.g. avium), cucumber (Cucumis, e.g. sativus), grape (Vitis, e.g. vinifera), lemon (Citrus limon), melon (Cucumis melo), nuts (such as the walnut, Juglans, e.g. regia; peanut, Arachis hypogeae), orange (Citrus, e.g. maxima), peach (Prunus, e.g. persica), pear (Pyra, e.g. communis), pepper (Solanum, e.g. capsicum), plum (Prunus, e.g. domestica), strawberry (Fragaria, e.g. moschata), tomato (Lycopersicon, e.g. esculentum), leafs, 0. such as alfalfa (Medicago sativa), cabbages (such as Brassica oleracea), 15 endive (Cichoreum, e.g. endivia), leek (Allium porrum), lettuce (Lactuca sativa), spinach (Spinaciaoieraceae), tobacco (Nicotiana tabacum), roots, such as arrowroot (Maranta arundinacea), beet (Beta vulgaris), carrot (Daucus carota), cassava (Manihot esculenta), turnip (Brassica rapa), radish (Raphanus sativus), yam (Dioscorea esculenta), sweet potato o. 20 (Ipomoea batatas) and seeds, such as bean (Phaseolus vulgaris), pea (Pisum sativum), soybean (Glycin max), wheat (Triticum aestivum), barley (Hordeum vulgare), corn (Zea mays), rice (Oryza sativa), tubers, such as kohlrabi (Brassica oleraceae), potato (Solanum tuberosum), and the like.
00* The edible parts may be conserved by drying in the presence of enhanced trehalose levels produced therein due to the presence of a plant expressible trehalose phosphate synthase gene.
The method of introducing the plant expressible gene coding for a trehalose-synthesizing enzyme, or any other sense or antisense gene into a recipient plant cell is not crucial, as long as the gene is expressed in said plant cell. The use of Agrobacterium tumefaciens or Agrobacterium rhizogenes mediated transformation is preferred, but other procedures are available for the introduction of DNA into plant cells. Examples are transformation of protoplasts using the calcium/polyethylene glycol method, electroporation, microinjection and DNA-coated particle bombardment (Potrykus, 1990, Bio/Technol. 535-542). Also combinations of Agrobacterium and coated particle bombardment may be used. Also transformation protocols involving other living vectors than Agrobacterium may be used, such as viral vectors from the Cauliflower Mosaic Virus (CaMV) and or combinations of Agrobacterium and viral vectors, a procedure referred to as agroinfection (Grimsley N. et al., 8 January 1987, Nature 325, 177-179). After selection and/or screening, the protoplasts, cells or plant parts that have been transformed are regenerated into whole plants, using methods known in the art (Horsch et al., 1985, Science 225, 1229-1231) The development of reproducible tissue culture systems for monocotyledonous crops, together with methods for introduction of genetic material into plant cells has facilitated transformation. Presently, preferred methods for transformation of monocot species are transformation with supervirulent Agrobacterium-strains, microprojectile bombardment of explants or suspension cells, and direct DNA uptake or 15 electroporation (Shimamoto, et al., 1989, Nature 338, 274-276).
Agrobacteriun-mediated transformation is functioning very well in rice (WO 94/00977). Transgenic maize plants have been obtained by introducing the Streptomyces hygroscopicus bar-gene, which encodes phosphinothricin acetyltransferase (an enzyme which inactivates the herbicide 20 phosphinothricin), into embryogenic cells of a maize suspension culture by microprojectile bombardment (Gordon-Kamm, 1990, Plant Cell, 2, 603-618). The introduction of genetic material into aleurone protoplasts of other monocot crops such as wheat and barley has been reported (Lee, 1989, Plant Mol. Biol. 13, 21-30). Wheat plants have been regenerated from embryogenic suspension culture by selecting only the aged compact and nodular embryogenic callus tissues for the establishment of the embryogenic suspension cultures (Vasil, 1990 Bio/Technol. 429-434).
Suitable DNA sequences for control of expression of the plant expressible genes (including marker genes), such as transcriptional initiation regions, enhancers, non-transcribed leaders and the like, may be derived from any gene that is expressed in a plant cell. Also intended are hybrid promoters combining functional portions of various promoters, or synthetic equivalents thereof. Apart from constitutive promoters, inducible promoters, or promoters otherwise regulated in their expression pattern, e.g. developmentally or cell-type specific, may be used to control expression of the plant expressible genes according to the
I
13 invention as long as they are expressed in plant parts that contain substrate for TPS.
To select or screen for transformed cells, it is preferred to include a marker gene linked to the plant expressible gene according to the invention to be transferred to a plant cell. The choice of a suitable marker gene in plant transformation is well within the scope of the average skilled worker; some examples of routinely used marker genes are the neomycin phosphotransferase genes conferring resistance to kanamycin (EP-B 131 623), the glutathion-S-transferase gene from rat liver conferring resistance to glutathione derived herbicides (EP-A 256 223), glutamine synthetase conferring upon overexpression resistance to glutamine synthetase inhibitors such as phosphinothricin (W087/05327), the acetyl transferase gene from Streptomyces viridochromogenes conferring resistance to the selective agent phosphinothricin (EP-A 275 15 957), the gene encoding a 5-enolshikimate-3- phosphate synthase (EPSPS) conferring tolerance to N-phosphonomethylglycine, the bar gene conferring resistance against Bialaphos WO 91/02071) and the like. The actual choice of the marker is not crucial as long as it is functional (i.e.
selective) in combination with the plant cells of choice.
The marker gene and the gene of interest do not have to be linked, since co-transformation of unlinked genes Patent 4,399,216) is also an efficient process in plant transformation.
Preferred plant material for transformation, especially for dicotyledonous crops are leaf-discs which can be readily transformed and have good regenerative capability (Horsch R.B. et al., (1985) Science 222, 1229-1231) It is immaterial to the invention how the presence of two or more genes in the same plant is effected. This can inter alia done be achieved by one of the following methods: transformation of the plant line with a multigene construct containing more than one gene to be introduced, co-transforming different constructs to the same plant line simultaneously, subsequent rounds of transformation of the same plant with the genes to be introduced, crossing two plants each of which contains a different gene to be introduced into the same plant, or combinations thereof.
The field of application of the invention lies both in agriculture and horticulture, for instance due to improved properties of the modified plants as such stress tolerance, such as cold tolerance, and preferably drought resistance, and increase in post-harvest quality and shelf-life of plants and plant products), as well as in any form of industry where trehalose is or will be applied in a process of forced water extraction, such as drying or freeze drying. Trehalose can be used or sold as such, for instance in purified form or in admixtures, or in the form of a plant product, such as a tuber, a fruit, a flower containing the trehalose, either in native state or in (partially) dehydrated form, and the like. Plant parts harbouring (increased levels of) trehalose phosphate or trehalose may be used or sold as such or processed without the need to add trehalose.
Also trehalose can be extracted and/or purified from the plants or plant parts producing it and subsequently used in an industrial process.
In the food industries trehalose can be employed by adding trehalose to foods before drying. Drying of foods is an important method of 20 preservation. Trehalose seems especially useful to conserve food products through conventional air-drying, and to allow for fast reconstitution upon addition of water of a high quality product (Roser et al., July 1991, Trends in Food Science and Technology, pp. 166-169). The benefits include retention of natural flavors/fragrances, taste of fresh product, and nutritional value (proteins and vitamins). It has been shown that trehalose has the ability to stabilize proteins e.g. vaccines, enzymes and membranes, and to form a chemically inert, stable glass. The low water activity of such thoroughly dried food products prevents chemical reactions, that could cause spoilage.
Field crops like corn, cassava, potato, sugar beet and sugarcane have since long been used as a natural source for bulk carbohydrate production (starches and sucrose). The production of trehalose in such crops, facilitated by genetic engineering of the trehalose-biosynthetic pathway into these plant species, would allow the exploitation of such engineered crops for trehalose production.
B
Trehalose is also used in drying or storage of biological macromolecules, such as peptides, enzymes, polynucleotides and the like.
All references cited in this specification are indicative of the level of skill in the art to which the invention pertains. All publications, whether patents or otherwise, referred to previously or later in this specification are herein incorporated by reference as if each of them was individually incorporated by reference. In particular WO 95/01446, cited herein, describing the production of trehalose in higher plants by genetic manipulation is herein incorporated by reference.
The Examples given below illustrate the invention and are in no way intended to indicate the limits of the scope of the invention.
Experimental DNA manipulations 15 All DNA procedures (DNA isolation from E.coli, restriction, ligation, transformation, etc.) are performed according to standard protocols (Sambrook et al. (1989) Molecular Cloning: a laboratory manual, 2nd ed.
Cold Spring Harbor Laboratory Press, CSH, New York).
20 Strains \o In all examples E.coli K-12 strain DH50C is used for cloning. The Agrobacterium tumefaciens strains used for plant transformation experiments are EHA 105 and MOG 101 (Hood et al. 1993, Trans. Research 2, 208-218) Isolation of a Datatin promoter/construction of pMOG546 A patatin promoter fragment is isolated from chromosomal DNA of Solanum tuberosum cv. Bintje using the polymerase chain reaction. A set of oligonucleotides, complementary to the sequence of the upstream region of the Xpat21 patatin gene (Bevan, Barker, Goldsbrough, Jarvis, Kavanagh, T. and Iturriaga, G. (1986) Nucleic Acids Res. 1A: 5564- 5566), is synthesized consisting of the following sequences: AAG CTT ATG TTG CCA TAT AGA GTA G 3' PatB33.2 (SEQIDNO:3) 5' GTA GTT GCC ATG GTG CAA ATG TTC 3' PatATG.2 (SEQIDNO:4) 16 These primers are used to PCR amplify a DNA fragment of 1123bp, using chromosomal DNA isolated from potato cv. Bintje as a template. The amplified fragment shows a high degree of similarity to the Xpat21 patatin sequence and is cloned using EcoRI linkers into a pUC18 vector resulting in plasmid pMOG546.
Construction of DMOG 799 pMOG 799 harbours the TPS gene from E. coli under control of the double enhanced 35S Cauliflower Mosaic promoter. The construction of this binary vector is described in detail in International patent application WO 95/01446, incorporated herein by reference.
Construction of pMOG845.
Plasmid pMOG546 containing the patatin promoter is digested with NcoI- 15 KpnI, incubated with E. coli DNA polymerase I in the presence of dATP and *dCTP thereby destroying the Ncol and KpnI site and subsequently relegated. From the resulting vector a l.lkb EcoRI-Smal fragment containing the patatin promoter is isolated and cloned into pMOG798 (described in detail in WO 95/01446) linearized with SmaI-EcoRI consequently exchanging the 35S CaMV promoter for the patatin promoter.
The resulting vector is linearized with HindIII and ligated with the following oligonucleotide duplex: (HindIII) PstI KpnI HindIII AGCT CTGCAG TGA GGTACC A 3' TCV 11 3' GACGTC ACT CCATGG TTCGA 5' TCV 12 (SEQIDNO:6) After checking the orientation of the introduced oligonucleotide duplex, the resulting vector is linearized with PstI-HindIII followed by the insertion of a 950bp PstI-HindIII fragment harbouring the potato proteinase inhibitor II terminator (PotPiII) (An, Mitra, Choi, Costa, An, Thornburg, R. W. and Ryan, C.A. (1989) The Plant Cell 1: 115-122 The PotPiII terminator is isolated by PCR amplification using chromosomal DNA isolated from potato cv. Desiree as a template and the following set of oligonucleotides: GTACCCTGCAGTGTGACCCTAGAC 3' TCV 15 (SEQIDNO:7) TCGATTCATAGAAGCTTAGAT 3' TCV 16 (SEQIDNO:8) The TPS expression cassette is subsequently cloned as a EcoRI-HindIII fragment into the binary vector pMOG402 resulting in pMOG845 (fig. 1).
A sample of E.coli Dha strain, harbouring pMOG845 has been deposited at the Centraal Bureau voor Schimmelcultures, Oosterstraat 1, P.O. Box 273, 3740 AG Baarn, The Netherlands, on January 4, 1995; the Accession Number given by the International Depositary Institution is CBS 101.95.
Triparental matings The binary vectors are mobilized in triparental matings with the E. coli strain HB101 containing plasmid pRK2013 (Ditta Stanfield, Corbin, and Helinski, D.R. et al. (1980) Proc. Natl. Acad. Sci. USA 22, 7347) into Agrobacterium tumefaciens strain MOG101 or EHA105 and used for transformation.
Transformation of tobacco (Nicotiana tabacum SRI) Tobacco is transformed by cocultivation of plant tissue with Agrobacteriunmtumefaciens strain MOG101 containing the binary vector of interest as described. Transformation is carried out using cocultivation of tobacco (Nicotiana tabacum SRI) leaf disks as described by Horsch et al. 1985, Science 221, 1229-1231. Transgenic plants are regenerated from shoots that grow on selection medium containing kanamycin, rooted and transferred to soil.
Transformation of potato tuber discs Potato (Solanum tuberosum cv. Kardal) is transformed with the Agrobacterium strain EHA 105 containing the binary vector of interest.
The basic culture medium is MS30R3 medium consisting of MS salts (Murashige, T. and Skoog, F. (1962) Physiol. Plan. 11, 473), R3 vitamins (Ooms et al. (1987) Theor. Appl. Genet. 73, 744), 30 g/l sucrose, 0.5 g/1 MES with final pH 5.8 (adjusted with KOH) solidified when necessary with 8 g/l Daichin agar. Tubers of Solanum tuberosum cv. Kardal are peeled and surface sterilized by burning them in 96% ethanol for 5 seconds.
Extinguish the flames in sterile water and cut slices of approximately 2 mm thickness. Disks are cut with a bore from the vascular tissue and incubated for 20 minutes in MS30R3 medium containing 1-5 x10 8 bacteria/mi of Agrobacterium EHA 105 containing the binary vector. Wash the tuber discs with MS30R3 medium and transfer them to solidified postculture medium PM consists of M30R3 medium supplemented with 3.5 mg/1 zeatin riboside and 0.03 mg/l indole acetic acid (IAA). After two days, discs were transferred to fresh PM medium with 200 mg/1 cefotaxim and 100 mg/l vancomycin. Three days later, the tuber discs are transferred to shoot induction medium (SIM) which consists of PM medium with 250 mg/1 carbenicillin and 100 mg/l kanamycin. After 4-8 weeks, shoots emerging from the discs are excised and placed on rooting medium (MS30R3-medium with 100 mg/l cefotaxim, 50 mg/l vancomycin and 50 mg/l kanamycin). The shoots are propagated axenically by meristem cuttings.
4* Potato stem-segment transformation protoc Potato transformation experiments using stem-internodes were performed in a similar way as described by Newell C.A. et al., Plant Cell Reports 1.: 30-34, 1990.
Induction of micro-tubers Stem segments of in vitro potato plants harbouring an auxiliary meristem are transferred to micro-tuber inducing medium. Micro-tuber inducing medium contains 1 X MS-salts supplemented with R3 vitamins, 0.5 g/1 MES (final pH= 5.8, adjusted with KOH) and solidified with 8 g/l Daishin agar, 60 g/l sucrose and 2.5 mg/1 kinetin. After 3 to 5 weeks of growth 3 in the dark at 24 0 C, micro-tubers are formed.
Trehalose assay Trehalose was determined quantitatively by anion exchange chromatography with pulsed amperometric detection. Extracts were prepared by adding 1 ml boiling water to 1 g frozen material which was subsequently heated for at 100 0 C. Samples (25 1l) were analyzed on a Dionex DX-300 liquid chromatograph equipped with a 4 x 250 mm Dionex 35391 carbopac PA-1 column and a 4 x 50 mm Dionex 43096 carbopac PA-1 precolumn. Elution was with 100 mM NaOH at 1 ml/min. Sugars were detected with a pulsed 19 amperometric detector (Dionex, PAD-2). Commercially available trehalose (Sigma) was used as a standard.
Isolation of Validamycin A Validamycin A is isolated from Solacol, a commercial agricultural formulation (Takeda Chem. Indust., Tokyo) as described by Kendall et al.
(1990) Phytochemistry, Vol. 21, No. 8, pp. 2525-2528. The procedure involves ion exchange chromatography (QAE-Sephadex A-25 (Pharmacia), bed vol. 10 ml, equilibration buffer 0.2 mM Na-Pi pH 7) from a 3% agricultural formulation of Solacol. Loading 1 ml of Solacol on the column and eluting with water in 7 fractions, practically all Validamycin is recovered in fraction 4.
Based on a 100% recovery, using this procedure, the concentration of Validamycin A was adjusted to 110-3 M in MS-buffer, for use in trehalose accumulation tests.
Alternatively, Validamycin A and B may be purified directly from Streptomyces hygroscopicus var. limoneus, as described by Iwasa T. et al., 1971, in The Journal of Antibiotics 2A(2), 119-123, the content of 20 which is incorporated herein by reference.
g*n.g Construction of MOG1027 pMOG1027 harbours the trehalase gene from Solanum tuberosum cv. Kardal in the reversed orientation under control of the double enhanced 25 Cauliflower Mosaic promoter. The construction of this vector is very ooe similar to the construction of pMOG799 and can be performed by any person skilled in the art. After mobilization of this binary vector by triparental mating to Agrobacterium, this strain can be used to transform Splant cells and to generate transgenic plants having reduced levels of trehalase activity.
Construction of pMOG1028 pMOG1028 harbours the trehalase gene from Solanum tuberosum cv. Kardal in the reversed orientation under control of the tuber specific patatin promoter. The construction of this vector is very similar to the construction of pMOG845 and can be performed by any person skilled in the art. After mobilization of this binary vector by triparental mating to Agrobacterium, this strain can be used in potato transformation experiments to generate transgenic plants having reduced levels of trehalase activity in tuber-tissue.
Construction of pMOG 1078 To facilitate the construction of a binary expression cassette harbouring the trehalase cDNA clone in the "sense" orientation under control of the double enhanced 35S CaMV promoter, two HindIII sites were removed from the trehalase cDNA coding region (without changing the amino acid sequence) by PCR based point-mutations. In this way, a BamHI fragment was engineered that contained the complete trehalase open reading frame. This fragment was subsequently used for cloning in the binary vector pMOG800 behind the constitutive de35S CaMV promoter yielding pMOG1078. pMOG800 is derived from pMOG402; the KpnI site in the polylinker has been restored.
pMOG42 is derived of pMOG23 (described in WO 95/01446) and harbours a restored neomycin phosphotransferase gene (Yenofsky Fine Pellow Proc Natl Acad Sci USA 87: 3435-3439, 1990).
20 EXAMPLE 1 Trehalose production in tobacco plants transformed with pMOG799 *Tobacco leaf discs are transformed with the binary vector pMOG799 using Agrobacterium tumefaciens. Transgenic shoots are selected on kanamycin.
Transgenic plants are transferred to the greenhouse to flower and set seed after selfing Seeds of these transgenic plants are surface sterilised and germinated in vitro on medium with Kanamycin. Kanamycin resistant seedlings and wild-type tobacco plants are transferred to MSmedium supplemented with 10- 3 M Validamycin A. As a control, transgenic "seedlings and wild-type plants are transferred to medium without Validamycin A. Analysis of leaves and roots of plants grown on Validamycin A shows elevated levels of trehalose compared to the control plants (Table No trehalose was detected in wild-type tobacco plants.
Table 1 pMOG799.1 pMOG799.13 pMOG799.31 Wild-type SR1 with Validamycin A leaf roots 0.0081 0.0044 0.0110 0.0080 0.0008 0.0088 without Validamycin A leaf roots 0.003 EXAMPLE 2 Trehalose production in potato micro-tubers transformed with pMOG845 Potato Solanum tuberosum cv. Kardal tuber discs are transformed with Agrobacterium tumefaciens EHA105 harbouring the binary vector pMOG845.
Transgenic shoots are selected on kanamycin. Micro-tubers (m-tubers) are induced on stem segments of transgenic and wild-type plants cultured on m-tuber inducing medium supplemented with 10-3 M Validamycin A. As a control, m-tubers are induced on medium without Validamycin A. M-tubers induced on medium with validamycin A showed elevated levels of trehalose in comparison with m-tubers grown on medium without Validamycin A (Table No trehalose was detected in wild-type m-tubers.
o r Table 2.
Trehalose fresh weight) +Validamycin A -Validamycin A 0.016 845-2 845-4 845-8 845-13 845-22 845-25 wT Kardal 0.051 0.005 0.121 0.002 EXAMPLE 3 Trehalose production in hydrocultures of tobacco plants transformed with pMOG799 Seeds (Sl) of selfed tobacco plants transformed with the binary vector pMOG799 are surface sterilised and germinated in vitro on MS20MS medium containing 50 gg/ml Kanamycin. Kanamycin resistant seedlings are transferred to soil and grown in a growth chamber (temp. 23 0 C, 16 hours of light/day). After four weeks, seedlings were transferred to hydrocultures with ASEF clay beads with approximately 450 ml of medium.
The medium contains 40 g/l Solacol dissolved in nano-water buffered with g/l MES to adjust to pH 6.0 which is sieved through a filter to remove solid particles. Essential salts are supplemented by adding POKONTM (1.5 ml/1). The following antibiotics are added to prevent growth of micro-organisms: 500g/ml Carbenicillin, 40g/ml Nystatin and 100gg/ml Vancomycin. As a control, transgenic seedlings and wild-type plants are transferred to medium without Solacol. Analysis of leaves of plants grown on Solacol shows elevated levels of trehalose compared to the control plants (Table No trehalose was detected in wild-type tobacco plants.
Table 3 Solacol Trehalose pMOG 799.1-1 0.008 *pMOG 799.1-2 0.004 pMOG 799.1-3 20 pMOG 799.1-4 pMOG 799.1-5 0.008 *oo pMOG 799.1-6 pMOG 799.1-7 0.005 pMOG 799.1-8 25 pMOG 799.1-9 pMOG 799.1-10 0.007 Wild-type SR1-1 S* Wild-type SR1-2 Wild-type SR1-3 Wild-type SR1-4 Example 4 Cloning of a full length cDNA encoding trehalase from potato tuber Using the amino acid sequence of the conserved regions of known trehalase genes (E.coli, Yeast, Rabbit, B. mori) (fig. four degenerated primers were designed: C C C CGT GT A TTAT GG GGI G TT IGA T TA TGGGAC Tase24 (SEQIDNO:11) T A A TAA AG C CGGC TAA GT GTICCIGGIGGICGITT IGA T Tase25 (SEQIDNO:12) CGT AG T GA TG A A GGIGG TGI ICGI IAG TA TA Tase26 (SEQIDNO:13) C CT CA G G C G AT A I C TTI CCATCC AAICCITC Tase27 (SEQIDNO:14) GA GC G Combinations of these primers in PCR experiments with genomic DNA and cDNA from S. tuberosum cv. Kardal leaf and tuber material respectively as template, resulted in several fragments of the expected length. A number of 190 bp. fragments obtained with the primer combination Tase24 and Tase 26 were subcloned into a pGEM T vector and sequenced. Several 30 of the clones analyzed showed homology with known trehalase sequences.
To exclude the isolation of non-plant derived trehalase sequences, Southern blot analysis was performed with gDNA from potato cv. Kardal. A number of clones isolated did not cross-hybridize with Kardal genomic DNA and were discarded. Two isolated clones were identical, gTasel5.4 derived 35 from a genomic PCR experiment and cTase5.2 derived from a PCR on cDNA, both showing hybridization in Southern blot analysis. One single hybridizing band was detected (EcoRI 1.5 Kb, HindIII 3 Kb and BamHI larger than 12 Kb) suggesting the presence of only one copy of the isolated PCR fragment.
A cDNA library was constructed out of poly A RNA from potato tubers (cv.
Kardal) using a Stratagene cDNA synthesis kit and the vector Lambda ZAPII. Recombinant phages (500.000) were screened with the radiolabeled cTase5.2 PCR fragment resulting in the identification of 3 positive clones. After purification, two clones were characterised with restriction enzymes revealing inserts of 2.15 and 2.3 kb respectively.
Their nucleotide sequence was 100% identical. The nucleic acid sequence of one of these trehalase cDNA clones from Solanum tuberosum including its open reading frame is depicted in SEQIDNO:9, while the aminoacid sequence derived from this nucleic acid sequence is shown in A plasmid harbouring an insert comprising the genetic information coding for trehalase has been deposited under no. CBS 804.95 with the Centraal Bureau voor Schimmelcultures, Oosterstraat 1, P.O. Box 273, 3740 AG Baarn, the Netherlands on December 8, 1995.
EXAMPLE Homology between the trehalase gene from potato with other Solanaceae Genomic DNA was isolated from tomato (Lycopersicon esculentum cv. Money maker), tobacco (Nicotiana tabacum cv. Petit havanna, SR1) and potato (Solanum tuberosum cv. Kardal), and subsequently digested with the restriction enzymes BamHI, BglII, NcoI, Spel, AccI, HindIII and EcoRI.
After gel-electrophoresis and Southern blotting, a 32 p]-alpha dCTP labelled trehalase potato cDNA probe was hybridized to the blot.
Hybridization signals of almost similar strength were observed in the lanes with potato and tomato genomic DNA indicating a high degree of identity. Only a weak hybridization signal was observed in the lanes 20 harbouring tobacco genomic DNA indicating a low degree of identity. A similar strategy can be used to identify trehalase genes from other crops and to select for crops were trehalase activity can be eliminated, via the anti-sense expression strategy, using a heterologous trehalase cDNA clone with sufficient homology. Alternatively, a homologous trehalase 25 cDNA clone can be isolated and used in the anti-sense expression strategy.
EXAMPLE 6 Overexpression of a potato trehalase cDNA in Nicotiana tabacum Tobacco leaf discs are transformed with the binary vector pMOG1078 using Agrobacterium tumefaciens. Transgenic shoots are selected on kanamycin and transferred to the greenhouse. Trehalase activity was determined in leaf samples of 26 transgenic and 12 non-transgenic control plants (Fig.
Trehalase activity up to ca. 17 pg trehalose/h/g protein was measured compared to ca. 1 ig trehalose/h/gg protein for non-transgenic controls. This clearly confirms the identity of the potato trehalase cDNA.
EXAMPLE 7 Transformation of pMOG845 transaenic potato plants with oMOG1027 In order to super-transform pMOG845 transgenic potato lines with an antisense trehalase construct (pMOG1027), stem segments were cut from in vitro cultured potato shoots transgenic for pMOG845. Three parent lines were selected, pMOG845/11, /22 and /28 that revealed to accumulate trehalose in microtubers when grown on validamycin A. The stem segments were transformed with the binary vector pMOG1027 using Agrobacterium tumefaciens. Supertransformants were selected on Hygromycin and grown in vitro.
EXAMPLE 8 Trehalose production in tubers of potato plants transaenic for pMOG845 and pMOG1027 Microtubers were induced on explants of the pMOG845 transgenic potato plants supertransformed with pMOG1027 using medium without the trehalase inhibitor validamycin A. The accumulation of trehalose, up to 0.75 mg.g-1 fresh weight, was noted in the supertransformed lines proving the reduced 20 trehalase activity in these lines using the anti-sense trehalase expression strategy (Fig. 6).
EXAMPLE 9 Isolation of a bipartite TPS/TPP gene from Helianthus annuus 25 To isolate a bipartite clone from H. annuus, a PCR amplification experiment was set up using two degenerate primers, TPS-deg2 and TPS- This primerset was used in combination with cDNA constructed on H.
annuus leaf RNA as a template. A DNA fragment of approximately 650 bp.
S: was amplified having a high similarity on amino acid level when compared to tps coding regions from E. coli and yeast. Based on its nucleotide sequence, homologous primers were designed and used in a Marathon RACE protocol (Clontech) to isolate the 5' and 3' parts of corresponding tps cDNA's. Using primercombinations SUNGSP1(or 2)/AP1 in RACE PCR, no bands were observed whereas nested PCR with NSUNGSPl(or2)/AP2 resulted in several DNA fragments. Some of these fragments hybridized with a 32P labelled Sunflower tps fragment after Southern blotting. Two fragments of circa 1.2 kb and 1.7 kb, corresponding respectively to the 5' and 3' part, were isolated from gel, subcloned and sequenced. The nucleotide sequence revealed a clear homology with known tps and tpp sequences indicating the bipartite nature of the isolated cDNA (SEQ ID NO 1) Using a unique XmaI site present in both fragments, a complete TPS/TPP bipartite coding region was obtained and subcloned in pGEM-T (Promega) yielding pMOG1192 (Fig. 2).
TPSdeg2: tig git kit tyy tic aya yic cit tyc c (SEQIDNO: 23) TPSdeg5: gyi aci arr ttc ati ccr tci c (SEQIDNO: 27) SUNGSP1: cga aac ggg ccc atc aat ta (SEQIDNO: SUNGSP2: tcg atg aga tca atg ccg ag (SEQIDNO: 16) API (Clontech): cca tcc taa tac gac tca cta tag ggc (SEQIDNO: 17) NSUNGSP1: cac aac agg ctg gta tec cg (SEQIDNO: 18) NSUNGSP2: caa taa cga act ggg aag cc (SEQIDNO: 19) AP2 (Clontech): act cac tat agg get cga gcg gc (SEQIDNO: EXAMPLE 20 Isolation of a bipartite TPS/TPP gene from Nicotiana tabacum Another strategy to isolate bipartite TPS/TPP genes from plants or other organisms involved the combined use of TPS and TPP primers in a single PCR reaction. As an example, a PCR was performed using cDNA generated on 25 tobacco leaf total RNA and the primerset TPSdegl and TRE-TPP-16. Nested PCR, using the amplification mix of the first reaction as template, with TPSdeg2 and TRE-TPP-15 resulted in a DNA fragment of ca. 1.5 kb. Nested PCR of the original amplification mix with TPSdeg2 and TRE-TPP-10 yielded a DNA fragment of ca.1.2 kb.
Initial amplification using primer combination TPSdegl and TRE-TPP-6 followed by a nested PCR using primer combination TPSdeg2 and yielded a DNA fragment of ca. 1.5 kb.
Based on sequence analysis, the 1.2 kb and 1.5 kb amplified DNA fragments displayed a high degree of identity to TPS and TPP coding regions indicating that they encode a bipartite TPS/TPP proteins.
TPSdegl: TRE-TPP-16: TPSdeg2: TRE-TPP-10: TRE-TPP-6: GAY ITI ATI TGG RTI CAY GAY TAY CA CCI ACI GTR CAI GCR AAI AC TIG GIT KIT TYY TIC AYA YIC CIT TYC C TGR TCI ARI ARY TCY TTI GC CCR TGY TCI GCI SWI ARI CC TCR TCI GTR AAR TCR TCI CC (SEQIDNO: 21) (SEQIDNO: 22) (SEQIDNO: 23) (SEQIDNO: 24) (SEQIDNO: (SEQIDNO: 26) 28 SEQUENCE LISTING GENERAL INFORMATION:
APPLICANT:
NAME: MOGEN INTERNATIONAL NV STREET: Einsteinweg 97 CITY: Leiden COUNTRY: The Netherlands POSTAL CODE (ZIP): 2233 CB TELEPHONE: (31) 71-5258282 TELEFAX: (31) 71-5221471 (ii) TITLE OF INVENTION: Enhanced accumulation of trehalose in plants (iii) NUMBER OF SEQUENCES: 27 (iv) COMPUTER READABLE FORM: MEDIUM TYPE: Floppy disk COMPUTER: IBM PC compatible OPERATING SYSTEM: PC-DOS/MS-DOS SOFTWARE: PatentIn Release Version #1.25 (EPO) INFORMATION FOR SEQ ID NO: 1: SEQUENCE CHARACTERISTICS: S" LENGTH: 2621 base pairs 30 TYPE: nucleic acid STRANDEDNESS: double TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA to mRNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: CDS LOCATION: 25..2485 So OTHER INFORMATION: /function= "trehalose phosph.
synthase and trehalose phosph. phosphatase" /product= "bipartite enzyme" (ix) FEATURE: NAME/KEY: unsure LOCATION: 1609..1611 (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 1: CTGATCCTGC GGTTTCATCA CAAT ATG ATA CTC TTA CAT CTG ATG CCC CTT Met Ile Leu Leu His Leu Met Pro Leu 1
CAG
Gin ATG CTC CCA AAT Met Leu Pro Asn
AGG
Arg 15 TTG ATT GTC GTA Leu Ile Vai Vai AAT CAG TTA CCC Asn Gln Leu Pro
ATA
Ile ATC GCT AGG CTA Ile Ala Arg Leu CTA ACG ACA ATG Leu Thr Thr Met
GAG
Glu GGT CCT TTT GGG Gly Pro Phe Gly ATT TCA Ile Ser 147 CTT GGG ACG Leu Gly Thr CAG CCG TTG Gin Pro Leu GTT CGA TTT ACA Vai Arg Phe Thr
TGC
Cys ACA TCA AAG ATG Thr Ser Lys Met CAT TAC CCG His Tyr Pro GCT GAC GTT Ala Asp Vai 195 AGG TTT TCT ATT Arg Phe Ser Ile
CTT
Leu 65 GGC GAT CCA CTA Gly Asp Pro Leu
AGG
Arg GGC CCT Gly Pro ACC GAA CAA GAT Thr Giu Gin Asp GTG TCA AAG ACA Val Ser Lys Thr
TTG
Leu CTC GAT AGG TTT Leu Asp Arg Phe
AAT
Asn 90 TGC GTT GOG GTT Cys Val Ala Val
TTT
Phe 95 GTC CCT ACT TCA Val Pro Thr Ser
AAA
Lys 100 TGG GAC CAA TAT Trp Asp Gin Tyr
TAT
Tyr 105 339 CAC TGC TTT TGT His Cys Phe Cys
AAG
Lys 110 CAG TAT TTG TGG Gin Tyr Leu Trp
CCG
Pro 115 ATA TTT CAT TAC Ile Phe His Tyr AAG GTT Lys Vai 120 387 CCC GCT TCT Pro Ala Ser GTC AAG AGT GTC Val Lys Ser Val
CCG
Pro 130 AAT AGT CGG GAT Asn Ser Arg Asp TCA TGG AAC Ser Trp Asn 135 ATG GAG GCA Met Giu Ala GCT TAT GTT CAC GTG AAC AAA Ala Tyr Val His Vai Asn Lys
GAG
Glu 145 TTT TCC CAG AAG Phe Ser Gin Lys
GTG
Vai 150 GTA ACC Val Thr 155 AAT CGT AGC AAT Asn Arg Ser Asn GTA TGG ATA CAT Val Trp Ile His
GAC
Asp 165 TAC CAT TTA ATG Tyr His Leu Met
ACG
Thr 170 CTA CCG ACT TTC Leu Pro Thr Phe
TTG
Leu 175 AGG CGG GAT TTT Arg Arg Asp Phe
TGT
Cys 180 CGT TTT AAA ATC Arg Phe Lys Ile
GGT
Gly 185 TTT TTT CTG CAT Phe Phe Leu His AGC CCG Ser Pro 190 TTT CCT TCC TCG GAG GTT TAC AAG Phe Pro Ser Ser Glu Val Tyr Lys 195 ACC CTA Thr Leu 200 CCA ATG AGA Pro Met Arg GGG TTC CAT Gly Phe His 220 CGA ATG TTT Arg Met Phe 235
AAC
Asn 205 GAG CTC TTG AAG Glu Leu Leu Lys
GGT
Gly 210 CTG TTA AAT GCT Leu Leu Asn Ala GAT CTT ATC Asp Leu Ile 215 TGT TGT AGT Cys Cys Ser ACA TAC GAT TAT Thr Tyr Asp Tyr
GCC
Ala 225 CGT CAT TTT CTA Arg His Phe Leu GGT TTG GAT Gly.Leu Asp CAG TTG AAA AGG, Gin Leu Lys Arg
GGG
Gly 245 TAC ATT TTC TTG Tyr Ile Phe Leu
GAA
Giu 250 TAT AAT GGA AGG Tyr Asn Gly Arg ATT GAG ATC AAG Ile Giu Ile Lys
ATA
Ile 260 AAG GCG AGC GG Lys Ala Ser Gly CAT GTT GOT CGA His Val Gly Arg
ATG
Met 270 GAG TCG TAC TTG Glu Ser Tyr Leu
AGT
Ser 275 CAG CCC GAT ACA Gin Pro Asp Thr AGA TTA Arg Leu 280
B
B.
B B
B.
B.
.B'B
B
B
B
B.
S
CAA GTT CAA Gin Val Gin 25 GTT GAT GAT Val Asp Asp 300 TTG GAG AAG 30 Leu Giu Lys 315
GAA
Giu 285 GTC CAA AAA CGT Val Gin Lys Arg
TCG
Ser 290 AAG GAA ATC GTG Lys Giu Ile Val CTA CTG GGA Leu Leu Gly 295 GTT TTA GCG Val Leu Ala TTG GAT ATA TTC Leu Asp Ile Phe
AAA
Lys 305 GOT GTG AAC TTC Gly Val Asn Phe
AAG
Lys 310 TTA CTT AAA Leu Leu Lys
TCA
Ser 320 CAC CCG AGT TGG His Pro Ser Trp
CAA
Gin 325 GGG CGT GTG GAA Gly Arg Val Giu 1011
AAG
Lys 35 330 GTG CAA ATC TTG Val Gin Ile Leu
AAT
Asn 335 CCT CTG CGC CGT Pro Leu Arg Arg
TGC
Cys 340 CAA GAC GTC GAT Gin Asp Val Asp
GAG
Giu 345 1059 ATC AAT GCC GAG Ile Asn Ala Giu
ATA
Ile 350 AGA ACA GTC TGT Arg Thr Val Cys
GAA
Giu 355 AGA ATC AAT AAC Arg Ile Asn Asn GAA CTG Giu Leu 360 1107 GGA AGO CCG Gly Ser Pro
GGA
Gly 365 TAC CAG CCC GTT Tyr Gin Pro Val TTA ATT GAT GGG Leu Ile Asp Gly CCC GTT TCG Pro Val Ser 375 GCA ATT GTT Ala Ile Val 1155 TTA AGT GAA Leu Ser Giu 380 ACA CCG TTA Thr Pro Leu 395 AAA GOT GOT TAT Lys Ala Ala Tyr
TAT
Tyr 385 GOT ATC GOC GAT Ala Ile Ala Asp 1203 1251 CGT GAC GGA Arg Asp Gly
CTG
Leu 400 AAT CTT ATC CCG Asn ILeu Ile Pro
TAC
Tyr 405 GAG TAC GTC GTT Giu Tyr Val Val TCC CGA CAA AGT GTT AAT.GAO CCA AAT CCC AAT ACT CCA AAA AAG AG1 1299 Ser 410 Arg Gin Ser Val Asn 415 Asp Pro Asn Pro Asn Thr Pro Lys 420 TCA CTA TOT TTA Ser Leu Ser Leu Lys Ser 425 ATG CTA GTG GTC Met Leu Val Val GAG TTC ATC GGT Glu Phe Ile Gly
GTT
Val 435 ACC GGG Thr Gly 440 1347 GCC ATA CGG GTC AAC OCA TGG GAT Ala Ile Arg VaiAsn Pro Trp Asp 445
GAG
Glu 450 TTG GAG ACA GCA Leu Giu Thr Ala GAA GCA TTA Glu Ala Leu 455 GCC CAC ATG Ala His Met 1395 TAO GAO GCA Tyr Asp Ala 460 OTC ATG GOT CCT Leu Met Ala Pro
GAT
Asp 465 GAC CAT AAA GAA Asp His Lys Glu 1443 AAA CAG Lys Gin 475 TAT CAA TAO ATT Tyr Gin Tyr Ile TCC CAT GAT GTA Ser His Asp Val
GCT
Ala 485 AAO TGG GOT AGO Asn Trp Ala Ser
TTO
Phe 490 TTT CAA GAT TTA Phe Gin Asp Leu
GAG
Glu 495 CAA GOG TGO ATO Gin Aia Oys Ile
GAT
Asp 500 OAT TOT OGT AAA His Ser Arg Lys
OGA
Arg 505 C. 0* *c C
S.
C
S
C
S
25 TGO ATG.AAT TTA Cys Met Asn Leu TTT GGG TTA GAT Phe Gly Leu Asp
ACT
Thr 515 AGA GTO GTO TTT Arg Val Val Phe TTG ATG Leu Met 520 1491 1539 1587 1635 1683 AGA AGT TTA Arg Ser Leu ATG GOT CAA Met Aia Gin 540
GCA
Ala 525 AGT TGG ATA AAG Ser Trp Ile Lys
ATG
Met 530 TCT TGG AAG AAT Ser Trp Lys Asn GCT TAT TCC Ala Tyr Ser 535 ACT GTT ACT Thr Val Thr AAT OGG GOC ATA Asn Arg Ala Ile
OTT
Leu 545 TTG GAO TAT GAO Leu Asp Tyr Asp
GGC
Gly 550 OCA TCT Pro Ser 555 ATO AGT AAA TCT Ile Ser Lys Ser TGO AAT GAT CCA Cys Asn Asp Pro 575
OCA
Pro 560 ACT GAA GOT GTT Thr Giu Ala Val
ATO
Ile 565 TCC ATG ATO AAO Ser Met Ile Asn 1731 1779 AAA Lys 570
OTG
Leu AAG AAO ATG GTG Lys Asn Met Vai ATO GTT AGT GGA Ile Val Ser Gly AGT AGA GAG AAA Ser Arg Giu Lys
ATO
Ile 590 TTG GOA GTT GGT TOG GOG CGT GTG AGA Leu Ala Val Gly Ser Ala Arg Val Arg 595 ACC CGC Thr Arg 600 1827 OAT TGO ACT His Oys Thr
GAG
Glu 605 CAC GGA TAO TTT His Gly Tyr Phe AGO TGG GOG GGT Arg Trp Ala Gly GAT CAA GAA Asp Gin Glu 615 1875 TGG GAA ACG Trp Giu Thr 620 TGC GCA CGT GAG Cys Ala Arg Glu AAT GTC GGG TGG Asn Val Gly Trp
ATG
Met 630 GAT GGA AAT Asp Gly Asn 1923 1971 CTG AGG Leu Arg 635 CCG GTT ATG AAT Pro Val Met Asn
CTT
Leu 640 TAT ACA GAA ACT Tyr Thr Glu Thr
ACT
Thr 645 GAC GGT TCG TAT Asp Gly Ser Tyr
ATT
Ile 650 GAA AAG AAA GAA Glu Lys LysGlu GCA ATG GTT TGG Ala Met Val Trp TAT GAA GAT GCT Tyr Glu Asp Ala
GAT
Asp 665 2019 2067 AAA GAT OTT GGG Lys Asp Leu Gly GAG CAG GCT AAG Giu Gin Ala Lys CTG TTG GAC CAT Leu Leu Asp His OTT GAA Leu Giu 680 AAO GTG CTC Asn Val Leu ATT GTA GAA Ile Val Giu 700 AAT GAG CCC GTT Asn Giu Pro Val
GGA
Gly 690 GTG AAT CGA ACA Val Asn Arg Thr GGT CAA TAC Gly Gin Tyr 695 OTT GTT ATG Leu Val Met 2115 .0
I.
.0 *oo GTT AAA CCA CAG Vai Lys Pro Gin
TCC
Ser 705 CCC ATT AAT TAC Pro Ile Asn Tyr
CTT
Leu 710 ACA TTC Thr Phe 715 ATA GGC ACT GAT Ile Gly Thr Asp AGA ATC TTT AAC Arg Ile Phe Asn
TTA
Leu 725 AAT TTC TTT AAA Asn Phe Phe Lys 2163 2211 2259
TAT
Tyr 730 GAA TGC AAT TAT Giu Cys Asn Tyr
AGG
Arg 735 GGG TCA CTA AAA Gly Ser Leu Lys
GGT
Gly 740 ATA GTT GOA GAG Ile Val Ala Giu ATT TTT GCG TTC Ile Phe Ala Phe
ATG
Met 750 GOT AAA AAG GGA Ala Lys Lys Gly
AAA
Lys 755 CAG GOT GAT TTC Gin Ala Asp Phe GTG TTG Val Leu 760 2307 0* .0* ACG TTG AAT Thr Leu Asn GGA ATA AAA Gly Ile Lys 780
GAT
Asp 765 AGA AGT GAT GAA Arg Ser Asp Giu
GAO
Asp 770 ATG TTT GTG GC Met Phe Val Ala ATT GGG GAT Ile Gly Asp 775 TTT ACA TGO Phe Thr Cys 2355 2403 AAG GGT CGG ATA Lys Gly Arg Ile
ACT
Thr 785 AAO AAO AAT TCA Asn Asn Asn Ser
GTG
Val 790 GTA GTG Val Val 795 GGA GAG AAA COG Gly Giu Lys Pro GOA GOT GAG TAO TTT TTA AAT GAT GTC Ala Ala Giu Tyr Phe Leu Asn Asp Val 805 2451
TOG
Ser 810 AGA AGO TOO GGG Arg Ser Ser Gly
TGT
Cys 815 CTC AGO AAC CAA Leu Ser Asn Gin
GGA
Gly 820 T GATCCGGAAG 2495 CTTCTOGTGA TOTTTATGAG TTAAAAGTTT TCGACTTTTT CTTCATCAAG ATTCATGGGA 2555 33 AAGTTGTTCA ATATGAACTT GTGTTCTTGG TTCTGGATTT TAGGGAGTCT ATGGATATAA
CATTTC
INFORMATION FOR SEQ ID NO: 2: SEQUENCE CHARACTERISTICS: LENGTH: 820 amino acids TYPE: amino acid TOPOLOGY: linear (ii) MOLECULE TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 2: Met Ile Leu Leu His Leu Met Pro Leu Gin Met Leu Pro Asn Arg Leu 2615 2621 0*
C.
9 1 Ile Thr Thr Leu 30 65 Val 35 Pro Leu Val Giu 145 Val Arg Val met Cys 50 Gly Ser Thr Trp Pro 130 Phe Trp Asp Val1 Giu 35 Thr Asp Lys Se r Pro 115 Asn Ser Ile Phe Ser Gly Ser Pro Thr Lys 100 Ile Ser Gin His Cys 180 5 Asn Pro Lys Leu Leu Trp Phe Arg Lys Asp 165 Arg Gin Phe Met Arg 70 Leu Asp His Asp Val 150 Tyr Phe Leu Gly His 55 Aia Asp Gin Tyr Ser 135 met His Lys Ile 25 Ser Pro Vai Phe Tyr 105 Val Asn Aia Met Gly 10 Ile Leu Gin Giy Asn 90 His Pro Ala Val1 Thr 170 Phe Ala Gly Pro Pro 75 Cys Cys Ala Tyr Thr 155 Leu Phe Arg Thr Leu Thr Val Phe Ser Val1 140 Asn Pro Leu Leu Arg Arg Giu Ala Cys Asp 125 His Arg Thr His Arg Val Phe Gin Val Lys 110 Val Val Se r Phe Ser 190 Leu Arg Ser Asp Phe Gin Lys Asn Asn Leu 175 Pro Thr Phe Ile Asp Val Tyr Ser Lys Tyr 160 Arg Phe Pro Ser Ser Giu Vai Tyr Lys Thr Leu Pro Met Arg Asn Giu Leu Leu 195 205 Lys Gly Leu Leu Asn Ala Asp Leu Ile Gly Phe His Thr Tyr Asp Tyr 210 215 220 Ala Arg His Phe Leu Thr Cys Cys Ser Arg Met Phe Gly Leu Asp His 225 230 235 240 Gin Leu Lys Arg Gly Tyr Ile Phe Leu Giu Tyr Asn Gly Arg Ser Ile 245 250 255 Giu Ile Lys Ile Lys Ala Ser Gly Ile His Vai Giy Arg Met Giu Ser 260 265 270 Tyr Leu Ser Gin Pro Asp Thr Arg Leu Gin Val Gin Giu Vai Gin Lys 275 280 285 Arg Ser Lys Giu Ile Val Leu Leu Gly Val Asp Asp Leu Asp Ile Phe 290 295 300 Lys Gly Vai Asn Phe Lys Vai Leu Ala Leu Giu Lys Leu Leu Lys Ser 305 310 315 320 His Pro Ser Trp Gin Gly Arg Vai Giu Lys Val Gin Ile Leu Asn Pro 5325 330 335 .Leu Arg Arg Cys Gin Asp Val Asp Giu Ile Asn Ala Giu Ile Arg Thr 340 345 350 Val Cys Giu Arg Ile Asn Asn Giu Leu Giy Ser Pro Gly Tyr Gin Pro 355 360 365 Val Vai Leu Ile Asp Giy Pro Val Ser Leu Ser Giu Lys Aia Ala Tyr 370 375 380 Tyr Ala Ile Ala Asp Met Ala Ile Val Thr Pro Leu Arg Asp Gly Leu *385 390 395 400 Asn Leu Ile Pro Tyr Giu Tyr Vai Vai Ser Arg Gin Ser Val Asn Asp 405 410 415 0Pro Asn Pro Asn Thr Pro Lys Lys Ser Met Leu Val Val Ser Giu Phe 420 425 430 Ile Gly Val Ser Leu Ser Leu Thr Gly A-la Ile Arg Val Asn Pro Trp 435 440 445 Asp Glu Leu Giu Thr Ala Giu Ala Leu Tyr Asp Ala Leu Met Ala Pro 450 455 460 Asp Asp His Lys Giu Thr Ala His Met Lys Gin Tyr Gin Tyr Ile Ile 465 470 475 480 Ser His Asp Val Ala Asn Trp Ala Ser Phe Phe Gin Asp Leu Glu Gin 485 490 495 Ala Cys Ile Asp His Ser Arg Lys Arg Cys Met Asn Leu Gly Phe Gly 500 505 510 Leu Asp Thr Arg Val Val Phe Leu Met Arg Ser Leu.Ala Ser Trp Ile 515 520 525 Lys Met Ser Trp Lys Asn Ala Tyr Ser Met Ala Gln.Asn Arg Ala Ile 530 535 540 Leu Leu Asp Tyr Asp Gly Thr Val Thr Pro Ser Ile Ser Lys Ser Pro 545 550 555 560 Thr Giu Ala Val Ile Ser Met Ile Asn Lys Leu Cys Asn Asp Pro Lys 565 570 575 Asn Met Val Phe Ile Val Ser Gly Arg Ser Arg Giu Lys Ile Leu Ala 580 585 590 Val Gly Ser Ala Arg Val Arg Thr Arg His Cys Thr Giu His Gly Tyr 595 600 605 0 Phe Ile Arg Trp Ala Gly Asp Gin Giu Trp Giu Thr Cys Ala Arg Giu 610 615 620 o. o .0 Asn Asn Val Gly Trp, Met Asp Gly Asn Leu Arg Pro Val Met Asn Leu *0625 630 635 640 Tyr Thr Giu Thr Thr Asp Giy Ser Tyr Ile Giu Lys Lys Giu Thr Ala 30 645 650 655 Met Val Trp His Tyr Giu Asp Ala Asp Lys Asp Leu Giy Leu Giu Gin 660 665 670 Ala Lys Giu Leu Leu Asp His Leu Giu Asn Val Leu Ala Asn Giu Pro *675 680 685 Val Gly Val Asn Arg Thr Gly Gin Tyr Ile Val Giu Vai Lys Pro Gin o 690 695 700 ooo o Ser Pro Ile Asn Tyr Leu Leu Val Met Thr Phe Ile Gly Thr Asp Cys 705 *710 715 720 Arg Ile Phe Asn Leu Asn Phe Phe Lys Tyr Giu Cys Asn Tyr Arg Gly 725 730 735 Ser Leu Lys Gly Ile Val Ala Giu Lys Ile Phe Ala Phe Met Ala Lys 740 745 750 Lys Gly Lys Gin Ala Asp Phe Val Leu Thr Leu Asn Asp Arg Ser Asp 755 760 765 Giu Asp Met Phe Val Ala Ile Gly Asp Gly Ile Lys Lys Gly Arg Ile 770 775 780 Thr Asn Asn Asn Ser Val Phe Thr Cys Val Val Gly Glu Lys Pro Ser 785 790 795 800 Ala Ala Glu Tyr Phe Leu Asn Asp Val Ser Arg Ser Ser Gly Cys Leu 805 810 815 Ser Asn Gin Gly 820 INFORMATION FOR SEQ ID NO: 3: SEQUENCE CHARACTERISTICS: LENGTH: 25 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES :(iii) ANTI-SENSE: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 3: AAGCTTATGT TGCCATATAG AGTAG INFORMATION FOR SEQ ID NO: 4: SEQUENCE CHARACTERISTICS: LENGTH: 24 base pairs 35 TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) S S: (iii) HYPOTHETICAL: YES (iii) ANTI-SENSE: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 4: GTAGTTGCCA TGGTGCAAAT GTTC 24 37 INFORMATION FOR SEQ ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: AGCTCTGCAG TGAGGTACCA INFORMATION FOR SEQ ID NO: 6: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs S(B) TYPE: nucleic acid STRANDEDNESS: single 25 TOPOLOGY: linear MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 6: 35 GACGTCACTC CATGGTTCGA INFORMATION FOR SEQ ID NO: 7: SEQUENCE CHARACTERISTICS: 40 LENGTH: 24 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 7: GTACCCTGCA GTGTGACCCT AGAC 24 38 INFORMATION FOR SEQ ID NO: 8: SEQUENCE CHARACTERISTICS: LENGTH: 21 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 8: TCGATTCATA GAAGCTTAGA T 21 INFORMATION FOR SEQ ID NO: 9: SEQUENCE CHARACTERISTICS: LENGTH: 2207 base pairs TYPE: nucleic acid STRANDEDNESS: double TOPOLOGY: linear S" (ii) MOLECULE TYPE: cDNA to mRNA (iii) HYPOTHETICAL: NO (iii) ANTI-SENSE: NO (vi) ORIGINAL SOURCE: ORGANISM: Solanum tuberosum 35 STRAIN: Kardal (ix) FEATURE: NAME/KEY: CDS LOCATION: 161..1906 (ix) FEATURE: NAME/KEY: misc feature LOCATION: 842..850 OTHER INFORMATION: /function= "putative glycosylationsite" (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 9: CTTTTCTGAG TAATAACATA GGCATTGATT TTTTTTCAAT TAATAACACC TGCAAACATT CCCATTGCCG GCATTCTCTG TTCTTACAAA AAAAAACATT TTTTTGTTCA CATAAATTAG 120 TTATGGCATC AGTATTGAAC CCTTTAACTT GTTATACAAT ATG GOT AAA GCT ATA Met Giy Lys Ala Ile 175 ATT TTT ATG ATT Ile Phe Met Ile ACT ATG TCT ATG Thr Met Ser Met
AAT
Asn ATG ATT AAA GCT Met Ile Lys Ala GAA ACT Giu Thr 223 TGC AAA TCC Cys Lys Ser
ATT
Ile GAT AAG GOT CCT Asp Lys Gly Pro ATC CCA ACA ACC Ile Pro Thr Thr CCT TTA GTG Pro Leu Val TAT GGC CAT Tyr Gly His 271 ATT TTT CTT Ile Phe Leu GAA AAA GTT CAA Giu Lys Val Gin GCT GCT CTT CAA Ala Ala Leu Gin
ACT
Thr AAA GGG Lys Giy TTT GAT GCT AAA Phe Asp Ala Lys
CTG
Leu 60 TTT GTT GAT ATG Phe Val Asp Met
TCA
Se r CTG AGA GAG AGT Leu Arg Giu Ser
CTT
Leu TCA GAA ACA GTT Ser Giu Thr Val GCT TTT AAT AAG Ala Phe Asn Lys CCA AGA GTT GTG Pro Arg Val Val 25 GOT TCA ATA TCA Gly Ser Ile Ser AGT GAT TTG GAT Ser Asp Leu Asp
GT
Gly TTT ATA GGT AGT Phe Ile Gly Ser TAC TTG Tyr Leu 100 AGT AGT CCT Ser Ser Pro
GAT
Asp 105 AAG GAT TTG GTT Lys Asp Leu Val
TAT
Tyr 110 GTT GAG CCT ATG Val Giu Pro Met GAT TTT GTG Asp Phe Val 115 GCT GAG CCT Ala Giu Pro 120 GAA GOC TTT TTG Giu Giy Phe Leu AAG GTG AAG AAT Lys Val Lys Asn
TCT
Ser 130 GAG GTG AGO 559 Giu Val Arg GCA TGO Ala Trp 135 GCA TTG GAG GTG Ala Leu Giu Val
CAT
His 140 TCA CTT TGO AAG, Ser Leu Trp Lys
AAT
Asn 145 TTA AGT AGO AAA Leu Ser Arg Lys
GTG
Val 150 GOT GAT CAT GTA TTG GAA AAA CCA GAG Ala Asp His Val Leu Giu Lys Pro Giu 155
TTG,
Leu 160 TAT ACT TTG CTT Tyr Thr Leu Leu TTG AAA AAT CCA OTT ATT ATA CCG OGA Leu Lys Asn Pro Val Ile Ile Pro Gly 170
TCG
Ser 175 CGT TTT AAG Arg Phe Lys GAG GTT TAT Giu Val Tyr 180 AGO AAA ATG Ser Lys Met 195 TAT TGO GAT Tyr Trp Asp
TCT
Ser 185 TAT TGO GTA ATA Tyr Trp Val Ile GOT TTG TTA GCA Gly Leu Leu Ala TAT GAA ACT Tyr Giu Thr 200 GCA AAA GGG ATT Ala Lys Gly Ile GTG ACT Val Thr 205 AAT CTG GTT TCT CTG ATA GAT Asn Leu Val Ser 210 Leu Ile Asp CAA TTT Gin Phe 215 GGT TAT GTT CTT Gly Tyr Val Leu
AAC
Asn 220 GGT GCA AGA GCA Gly Ala Arg Ala
TAC
Tyr 225 TAC AGT AAC AGA Tyr Ser Asn Arg
AGT
Ser 230 CAG CCT CCT GTC Gin Pro Pro. Val
CTG
Leu 235 GOC ACG ATG ATT Ala Thr Met Ile GAC ATA TTC AAT Asp Ile Phe Asn
CAG
Gin 245 ACA GGT GAT TTA Thr Gly Asp Leu
AAT
Asn 250 TTG GTT AGA AGA Leu Val Arg Arg
TCC
Ser 255 CTT CCT GCT TTG Leu Pro Ala Leu CTC AAG Leu Lys 260 943 GAG AAT CAT Giu Asn His GCT CAG GGA Ala Gin Giy 280
TTT
Phe 265 TGG AAT TCA GGA Trp Asn Ser Gly
ATA
Ile 270 CAT AAG GTG ACT His Lys Val Thr ATT CAA GAT Ile Gin Asp 275 ATG TGG AAT Met Trp Asn
S.
*5* TCA AAC CAC AGC Ser Asn His Ser AGT CGG TAC TAT Ser Arg Tyr Tyr AAG CCC Lys Pro 295 CGT CCA GAA TCG Arg Pro Giu Ser ACT ATA GAC AGT Thr Ile Asp Ser
GAA
Giu 305 ACA GCT TCC GTA Thr Ala Ser Val 1039 1087 1135 1183
CTC
Leu 310 CCA AAT ATA TGT Pro Asn Ile Cys
GAA
Glu 315 AAA AGA GAA TTA Lys Arg Giu Leu CGT GAA CTG GCA Arg Giu Leu Ala
TCA
Ser 325 GCT GCT GAA AGT Ala Ala Giu Ser
GGA
Gly 330 TGG GAT TTC AGT Trp Asp Phe Ser
TCA
Ser 335 AGA TGG ATG AGC Arg Trp, Met Ser AAC GGA Asn Gly 340
S
TCT GAT CTG Ser Asp Leu AAT GCA TTC Asn Ala Phe 360
ACA
Thr 345 ACA ACT AGT ACA Thr Thr Ser Thr
ACA
Thr 350 TCA ATT CTA CCA Ser Ile Leu Pro GTT GAT TTG Val Asp Leu 355 CTA GCA AAT Leu Ala Asn 1231 1279 CTT CTG AAG ATG Leu Leu Lys Met
GAA
Giu 365 CTT GAC ATT GCC.
Leu Asp Ile Ala CTT GTT GGA Leu Val Gly 375 GAA AGT AGC Giu Ser Ser
ACG
Thr 380 GCT TCA CAT TTT Ala Ser His Phe
ACA
Thr 385 GAA GCT GCT CAA Giu Ala Ala Gin 1327
AAT
Asn 390 AGA CAG AAG GOT Arg Gin Lys Ala ATA AAC Ile Asn 395 TGT ATC TTT Cys Ile Phe TGG AAC Trp Asn 400 GCA GAG ATG Ala Giu Met
GGG
Gly 405 1375 CAA TGG CTT GAT TAG TGG GTT AGC AAG AGC GAC AGA TCT GAG Gin Trp, Leu Asp Tyr Trp Leu Thr Asn Ser Asp Thr Ser Glu GAT ATT Asp Ile 420 1423 TAT AAA TGG Tyr Lys Trp TTT GTT CCG Phe Val Pro 440
GAA
Giu 425 GAT TTG CAC GAG Asp Leu His Gin AAG AAG TCA TTT Lys Lys Ser Phe GGG TGT AAT Ala Ser Asn 435 AAT ATG ACA Asn Ile Thr 1471 GTG TGG ACT GAA ATT TGT TGT TCA GAT Leu,.Trp Thr Giu Ile Ser Cys Ser Asp 445 1519 *ACT GAG Thr Gin 455 AAA GTA GTT GAA Lys Val Val Gin
AGT
Ser 460 GTC ATG AGG TG Leu Met Ser Ser
GGG
Gly 465 TTG CTT GAG GCT Leu Leu Gin Pro 1567
GGA
Ala 470 GGG ATT GGA ATG Gly Ile Ala Met TTG TGT AAT ACT Leu Ser Asn Thr GAG CAA TGG GAT Gin Gin Trp, Asp 9*
C
CCC.
a GGG AAT GGT TGG Pro Asn Gly Trp
CCC
Pro 490 CCC CTT CAA GAG Pro Leu Gin His
ATA
Ile 495 ATC ATT GAA GGT Ile Ile Giu Gly CTC TTA Leu Leu 500 1615 1663 1711 25 AGG TCT GGA Arg Ser Gly CG TGG TTA 30 Arg Trp Leu 520 TAT GAA AAA Tyr Giu Lys 35 535
GTA
Leu 505 GAA GAG GGA AGA Giu Glu Ala Arg TTA GGA AAA GAG Leu Ala Lys Asp ATT GGT ATT Ile Ala Ile 515 GGT GGT ATG Giy Ala Met AGA ACT AAG TAT Arg Thr Asn Tyr ACT TAG AAG AAA Thr Tyr Lys Lys
ACC
Thr 530 TAT GAT GTG Tyr Asp Val
ACA
Thr 540 AAA TGT GGA GGA Lys Cys Gly Ala
TAT
Tyr 545 GGA GGT GGT GGT Gly Gly Gly Gly 1759 1807 1855 1903
GAA
Glu 550 TAT ATG TCG CAA Tyr Met Ser Gin
ACG
Thr 555 GGT TTG GGA TGG Giy Phe Gly Trp
TCA
Ser 560 AAT GGC GTT GTA Asn Gly Vai Val
GTG
Leu 565 GCA GTT GTA GAG Ala Leu Leu Giu
GAA
Giu 570 TTT GGA TGG GCT Phe Gly Trp Pro
GAA
Giu 575 GAT TTG AAG ATT Asp Leu Lys Ile GAT TGG Asp Cys 580 TAATGAGGAA GTAGAAAAGC CAAATGAAAG ATCATTGAGT TTTATTTTGT TCTTTTGTTA AAATAAGGTG GAATGGTTTG CTGATAGTTT ATGTTTTGTA TTACTATTTC ATAAGGTTTT TGTACCATAT GAAGTGATAT TACCATGAAC TATGTGGTTG GGACTCTTGA AATCGGATTT TGGAAAAATA ATGCAGTTTT GGAGAATCGG ATAAGATAGA GGATGTATGG ATCTAAATTG TAAAGAGGTT ACTATATTAA GTAAAAGAAA GATGATTCCT CTGCTTTAAA AAAAAAAAAA 1963 2023 2083 2143 2203 42
AAAA
INFORM4AT ION FOR SEQ ID NO: Wi SEQUENCE CHARACTERISTICS:.
LENGTH: 581 amino acids TYPE: amino acid TOPOLOGY: linear (ii) MOLECULE.TYPE: protein (xi) SEQUENCE DESCRIPTION: SEQ ID NO: Met Gly Lys Ala Ile Ile Phe Met Ile Phe Thr Met 2207 S S
S.
S..
S
S
*5SS
S
555.5.
S. 55
S
S
1 Ile Thr Gin 25 Ser 30 Pro Ile Pro Asn 40 Asn 145 Tyr Phe Lys Thr Thr 50 Leu Arg Giy met Ser 130 Leu Thr Lys Ala Pro 35 Tyr Arg Val1 Ser Asp 115 Giu Ser Leu Giu Giu Leu Gly Glu Val Tyr 100 Phe Val Arg Leu Val 180 Thr Val His Ser Asn Leu Val Arg Lys Pro 165 Tyr Cys Ile Lys Leu 70 Gly Ser Ala Ala Val 150 Leu Tyr Lys Phe Giy 55 Ser Ser Ser Giu Trp 135 Ala Lys Trp, Ile 25 Glu Asp Thr Ser Asp 105 Giu Leu His Pro Ser 185 10 Asp Lys Ala Val1 Lys 90 Lys Gly Giu Val Val 170 Tyr Lys Val1 Lys Glu 75 Ser Asp Phe Val1 Leu 155 Ile Trp Gly Gin Leu Ala Asp Leu Leu His 140 Giu Ile Val1 Ser Met Pro Val Giu Ala Phe Val Phe Asn Leu Asp Val Tyr 110 Pro Lys 125 Ser Leu Lys Pro Pro Gly Ile Arg 190 Asn Ile Ala Asp Lys Gly Val1 Val1 Trp, Giu Ser 175 Gly Met Pro Leu met Leu Phe Giu Lys Lys Leu 160 Arg Leu Leu Ala Ser Lys Met Tyr Giu Thr Ala Lys Gly Ile Val Thr Asn Leu 195 200 205 43 Vai Ser Leu Ile Asp Gin Phe Gly Tyr Vai Leu Asn Giy Ala Arg Ala Tyr 225 Asp Pro Val1 Tyr Giu 305 Arg 25 Trp, Leu Ala Thr 35 385 Asn 40 Thr Ser Asp Gly 465 210 Tyr Ile Ala Thr Ala 290 Thr Giu Met.
Pro Phe 370 Giu Ala Ser Phe Asn 450 Leu Ser Phe Leu Ile 275 Met Ala Leu Ser Val1 355 Leu Ala Giu Giu Ala 435 Asn Leu Asn Arg Asn Gin 245 Leu.. Lys 260 Gin Asp Trp Asn Ser Val Ala Ser 325 Asn Gly 340 Asp Leu Ala Asn Ala Gin Met Giy 405 Asp Ile 420 Ser Asn Ile Thr Gin Pro 215 Ser Gin 230 Thr Giy Giu Asn Ala Gin Lys Pro 295 Leu Pro 310 Ala Ala Ser Asp Asn Ala Leu Val 375 Asn Arg 390 Gin Trp Tyr Lys Phe Vai Thr Gin 455 Ala Gly 470 Pro Asp His Gly 280 Arg Asn Giu Leu Phe 360 Giy Gin Leu Trp Pro 440 Lys Ile Pro Leu Phe 265 Ser Pro Ile Ser Thr 345 Leu Giu Lys Asp Giu 425 Leu Val Ala Val Asn 250 Trp, Asn Giu Cys Gly 330 Thr Leu Ser Ala Tyr 410 Asp Trp, Val1 met Leu 235 Leu Asn His Ser Glu 315 Trp, Thr Lys Ser Ile 395 Trp Leu Thr Gin Th r 475 220 Alia Val1 Ser Ser Ser 300 Lys Asp Ser Met Th r 380 Asn Leu His Glu Se r 460 Leu Thr Arg Gly Leu 285 Thr Arg Phe Thr Giu 365 Ala Cys Thr Gin Ile 445 Leu Ser Met Arg Ile 270 Se r Ile Giu Ser Thr 350 Leu Ser Ile Asn Asn 430 Ser Met Asn Ile Ser 255 His Arg Asp Leu Ser 335 Ser Asp His Phe Ser 415 Lys Cys Ser Th r Val1 240 Leu Lys Tyr Ser Tyr 320 Arg Ile Ile Phe Trp, 400 Asp Lys Ser Se r Gly 480 Gin Gin Trp Asp Phe Pro Asn Gly Trp Pro Pro Leu Gin His Ile Ile 4 AS 490) 495 Ile Glu Gly Lys Asp Ile 515 Leu Leu 500 Arg Ser Gly Leu 505 Glu Glu Ala Arg Thr Leu Ala 510 Ala Ile Arg Trp Leu 520 Arg Thr Asn Tyr Val Thr Tyr Lys 525 Lys Thr 530 Gly Ala Met Tyr Glu 535 Lys Tyr Asp Tyr 545 Gly Gly Gly Gly Tyr Met Ser Gln Val Thr Lys Cys Gly Ala 540 Thr Gly Phe Gly Trp Ser 555 560 Phe Gly Trp Pro Glu Asp 575 Asn Gly Val Leu Lys Ile Val Leu 565 Asp Cys 580 Ala Leu Leu Glu
S
S
INFORMATION FOR SEQ ID NO: 11: SEQUENCE CHARACTERISTICS: LENGTH: 33 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (ix) FEATURE: NAME/KEY: modified base LOCATION: 6 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: OTHER INFORMATION: /modbase= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 11: GGYGGNMGMT TYRWNGARKT MTAYKRYTGG GAC INFORMATION FOR SEQ ID NO: 12: SEQUENCE CHARACTERISTICS: LENGTH: 26 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 3 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 6 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 9 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 12 25 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 30 OTHER INFORMATION: /mod base= i r (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 21 35 OTHER INFORMATION: /mod base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 12: 40 GTNCCNGGNG GNCGNTTYRW NGARKT 26 6 6 INFORMATION FOR SEQ ID NO: 13: SEQUENCE CHARACTERISTICS: LENGTH: 26 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES
I
S*
46 (ix) FEATURE: NAME/KEY: modified base LOCATION: 3 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modified-base LOCATION: 9 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 12 OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified-base LOCATION: 18 OTHER INFORMATION: /mod-base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 13: GGNGGYTGNS WNCGNYRNAG RTARTA 26 30 .3 INFORMATION FOR SEQ ID NO: 14: SEQUENCE CHARACTERISTICS: LENGTH: 24 base pairs 35 TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: DNA (genomic) (iii) HYPOTHETICAL: YES (ix) FEATURE: NAME/KEY: modified base LOCATION: 1 OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 7 OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 19 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 22 OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 14: NSCRTTNRYC CATCCRAANC CNTC 24 INFORMATION FOR SEQ ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO 30 (xi) SEQUENCE DESCRIPTION: SEQ ID NO: CGAAACGGGC CCATCAATTA INFORMATION FOR SEQ ID NO: 16: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single 40 TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 16: TCGATGAGAT CAATGCCGAG INFORMATION FOR SEQ ID NO: 17: SEQUENCE CHARACTERISTICS: LENGTH: 27 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 17: CCATCCTAAT ACGACTCACT ATAGGGC 27 INFORMATION FOR SEQ ID NO: 18: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single 25 TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 18: CACAACAGGC TGGTATCCCG INFORMATION FOR SEQ ID NO: 19: SEQUENCE CHARACTERISTICS: 40 LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 19: CAATAACGAA CTGGGAAGCC 49 INFORMATION FOR SEQ ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 23 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (xi) SEQUENCE DESCRIPTION: SEQ ID NO: ACTCACTATA GGGCTCGAGC GGC 23 INFORMATION FOR SEQ ID NO: 21: SEQUENCE CHARACTERISTICS: LENGTH: 26 base pairs TYPE: nucleic acid STRANDEDNESS: single 25 TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified base S(B) LOCATION: 4 OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: 6 40 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 9 OTHER INFORMATION: /mod base= i (ix) FEATURE: NAME/KEY: modified base LOCATION: OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 21: GAYNTNATNT GGRTNCAYGA YTAYCA 2( INFORMATION FOR SEQ ID NO: 22: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified base LOCATION: 3 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified_base LOCATION: 6 OTHER INFORMATION: /modbase= i 25 (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 12 OTHER INFORMATION: /mod_base= i 30 (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 18 OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 22: CCNACNGTRC ANGCRAANAC INFORMATION FOR SEQ ID NO: 23: SEQUENCE CHARACTERISTICS: LENGTH: 28 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified base LOCATION: 2 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modified base LOCATION: OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 8 OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 14 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: OTHER INFORMATION: /modbase= i (ix) FEATURE: NAME/KEY: modifiedbase LOCATION: 23 OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 23: 35 TNGGNTKNTT YYTNCAYAYN CCNTTYCC 28 INFORMATION FOR SEQ ID NO: 24: SEQUENCE CHARACTERISTICS: 40 LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified base LOCATION: 6 OTHER INFORMATION: /modbase= i 52 (ix) FEATURE: NAME/KEY: modified_base LOCATION: 9 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified_base LOCATION: 18 OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 24: TGRTCNARNA RYTCYTTNGC INFORMATION FOR SEQ ID NO: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified_base LOCATION: 9 OTHER INFORMATION: /mod_base= i (ix) FEATURE: 35 NAME/KEY: modified_base LOCATION: 12 OTHER INFORMATION: /mod_base= i (ix) FEATURE: S 40 NAME/KEY: modified_base LOCATION: OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified_base LOCATION: 18 OTHER INFORMATION: /mod_base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: CCRTGYTCNG CNSWNARNCC INFORMATION FOR SEQ ID NO: 26: SEQUENCE CHARACTERISTICS: LENGTH: 20 base pairs TYPE: nucleic acid STRANDEDNESS: single TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified_base LOCATION: 6 OTHER INFORMATION: /mod_base i (ix) FEATURE: 20 NAME/KEY: modified_base LOCATION: 17 OTHER INFORMATION: /mod_base= i 25 (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 26: TCRTCNGTRA
ARTCRTCNCC
INFORMATION FOR SEQ ID NO: 27: SEQUENCE CHARACTERISTICS: LENGTH: 22 base pairs TYPE: nucleic acid STRANDEDNESS: single 35 TOPOLOGY: linear (ii) MOLECULE TYPE: cDNA (iii) HYPOTHETICAL: NO (ix) FEATURE: NAME/KEY: modified_base LOCATION: 3 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified_base LOCATION: 6 OTHER INFORMATION: /mod_base= i (ix) FEATURE: NAME/KEY: modified_base LOCATION: 1 54 OTHER INFORMATION: /mod base= (ix) FEATURE: NAME/KEY: modified-base LOCATION: 21 OTHER INFORMATION: /mod-base= i (xi) SEQUENCE DESCRIPTION: SEQ ID NO: 27: GYNACNARRT TCATNCCRTC NC 22

Claims (7)

  1. 2. A chimaeric gene according to claim 1 comprising the sequence depicted as SEQ ID No. 1.
  2. 3. A chimaeric gene according to claim 1 or claim 2 said gene comprising, in sequence: a transcription initiation region obtainable from a gene preferentially expressed in a plant part, (ii) a 5'-untranslated leader, (iii) an open reading frame encoding a bipartite trehalose synthesizing enzyme said enzyme having both trehalose phosphate synthase (TPS) and trehalose phosphate phosphotase (TPP) activity; and (iv) downstream of said open reading frame, a transcriptional terminator region. S4. A chimaeric gene according to claim 2 wherein said transcription initiation region is from t he patatin gene from Solanum tuberosum and said transcriptional terminator region is obtainable from the proteinase inhibitor-in gene of Solanum ruberosum.
  3. 5. A vector comprising a chimaeric plant expressible gene according to any of claims 1 to 4.
  4. 6. A recombinant plant genome comprising a chimaeric gene according to any of claims I to 4.
  5. 7. A plant cell having a recombinant genome according to claim 6. S: g8. A plant or a part thereof, consisting essentially of cells according to claim 7. 56
  6. 9. A plant or apart thereof according to claim 8 wherein said plant or a part thereof is from" the species Solaitum tube rcsumL A plant part according to claim 9, wh~ich is a tuber or a micro-tubear. 11, A process for obtaining1 trehalose, comprising the steps of. growing a plant cell according to claim 7, or cultivating a plant according to claim 8, or cultivating a plant part according to claim 8 or 9; and (ii) extracting trehalose from said plant cells, plants or parts.
  7. 12. A chimaeric gene according to claim 1 substantially as hereinbefore described with reference to any of the examples. DATED: 30 August, 2002 PHILLIPS ORMONDE FITZPATRICK Attorneys for: SYNGENTA MOGEN By 0S 6 0060 0* 0 60 0 so
AU48921/00A 1996-01-12 2000-07-31 Enhanced accumulation of trehalose in plants Ceased AU754482B2 (en)

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Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996021030A1 (en) * 1995-01-04 1996-07-11 Mogen International N.V. Enhanced accumulation of trehalose in plants

Patent Citations (1)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1996021030A1 (en) * 1995-01-04 1996-07-11 Mogen International N.V. Enhanced accumulation of trehalose in plants

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
PLANT PHYSIO. 108(2) 149 (1995) GODDIJN OJM ET AL *

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