AU750975B2 - Quantitative methods, systems and apparatuses for gene expression analysis - Google Patents

Quantitative methods, systems and apparatuses for gene expression analysis Download PDF

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Publication number
AU750975B2
AU750975B2 AU40751/99A AU4075199A AU750975B2 AU 750975 B2 AU750975 B2 AU 750975B2 AU 40751/99 A AU40751/99 A AU 40751/99A AU 4075199 A AU4075199 A AU 4075199A AU 750975 B2 AU750975 B2 AU 750975B2
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AU
Australia
Prior art keywords
gene expression
gene
genes
expression
cell
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Ceased
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AU40751/99A
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AU4075199A (en
Inventor
Stewart Scherer
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Rosetta Inpharmatics LLC
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Rosetta Inpharmatics LLC
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Assigned to ROSETTA INPHARMATICS, INC. reassignment ROSETTA INPHARMATICS, INC. Amend patent request/document other than specification (104) Assignors: ACACIA BIOSCIENCES INC.
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    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6809—Methods for determination or identification of nucleic acids involving differential detection
    • Y—GENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02—TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02A—TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A90/00—Technologies having an indirect contribution to adaptation to climate change
    • Y02A90/10—Information and communication technologies [ICT] supporting adaptation to climate change, e.g. for weather forecasting or climate simulation

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  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Molecular Biology (AREA)
  • Biotechnology (AREA)
  • Biophysics (AREA)
  • Physics & Mathematics (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
AU40751/99A 1998-05-12 1999-05-11 Quantitative methods, systems and apparatuses for gene expression analysis Ceased AU750975B2 (en)

Applications Claiming Priority (5)

Application Number Priority Date Filing Date Title
US7666898A 1998-05-12 1998-05-12
US09/076668 1998-05-12
US29265799A 1999-04-15 1999-04-15
US09/292657 1999-04-15
PCT/US1999/010387 WO1999058720A1 (en) 1998-05-12 1999-05-11 Quantitative methods, systems and apparatuses for gene expression analysis

Publications (2)

Publication Number Publication Date
AU4075199A AU4075199A (en) 1999-11-29
AU750975B2 true AU750975B2 (en) 2002-08-01

Family

ID=26758353

Family Applications (1)

Application Number Title Priority Date Filing Date
AU40751/99A Ceased AU750975B2 (en) 1998-05-12 1999-05-11 Quantitative methods, systems and apparatuses for gene expression analysis

Country Status (8)

Country Link
EP (1) EP1076722A1 (zh)
JP (1) JP2002514804A (zh)
KR (1) KR20010052341A (zh)
CN (1) CN1309722A (zh)
AU (1) AU750975B2 (zh)
CA (1) CA2331510A1 (zh)
IL (1) IL139567A0 (zh)
WO (1) WO1999058720A1 (zh)

Families Citing this family (29)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US6203987B1 (en) 1998-10-27 2001-03-20 Rosetta Inpharmatics, Inc. Methods for using co-regulated genesets to enhance detection and classification of gene expression patterns
US6468476B1 (en) 1998-10-27 2002-10-22 Rosetta Inpharmatics, Inc. Methods for using-co-regulated genesets to enhance detection and classification of gene expression patterns
US6950752B1 (en) 1998-10-27 2005-09-27 Rosetta Inpharmatics Llc Methods for removing artifact from biological profiles
US6801859B1 (en) 1998-12-23 2004-10-05 Rosetta Inpharmatics Llc Methods of characterizing drug activities using consensus profiles
US6453241B1 (en) 1998-12-23 2002-09-17 Rosetta Inpharmatics, Inc. Method and system for analyzing biological response signal data
US6370478B1 (en) * 1998-12-28 2002-04-09 Rosetta Inpharmatics, Inc. Methods for drug interaction prediction using biological response profiles
US6692916B2 (en) 1999-06-28 2004-02-17 Source Precision Medicine, Inc. Systems and methods for characterizing a biological condition or agent using precision gene expression profiles
US6960439B2 (en) 1999-06-28 2005-11-01 Source Precision Medicine, Inc. Identification, monitoring and treatment of disease and characterization of biological condition using gene expression profiles
WO2001029268A2 (en) * 1999-10-18 2001-04-26 Curagen Corporation Method for identifying interacting gene products
WO2001051667A2 (en) * 2000-01-14 2001-07-19 Integriderm, L.L.C. Informative nucleic acid arrays and methods for making same
AU4556501A (en) * 2000-03-09 2001-09-17 Yale University Phytomics: a genomic-based approach to herbal compositions
US7363165B2 (en) 2000-05-04 2008-04-22 The Board Of Trustees Of The Leland Stanford Junior University Significance analysis of microarrays
JP2004522216A (ja) 2000-10-12 2004-07-22 アイコニックス ファーマシューティカルズ インコーポレイテッド 化合物情報とゲノム情報との相互相関
US6691042B2 (en) 2001-07-02 2004-02-10 Rosetta Inpharmatics Llc Methods for generating differential profiles by combining data obtained in separate measurements
GB0117631D0 (en) * 2001-07-19 2001-09-12 Syngenta Ltd Improvements in or relating to organic compounds
WO2003040404A1 (en) 2001-11-09 2003-05-15 Source Precision Medicine, Inc. Identification, monitoring and treatment of disease and characterization of biological condition using gene expression profiles
WO2003091450A1 (en) * 2002-04-24 2003-11-06 Azign Bioscience A/S Method for evaluating a therapeutic potential of a chemical entity
FR2840323B1 (fr) * 2002-05-31 2006-07-07 Centre Nat Rech Scient Methode d'analyse des variations de transcription d'un ensemble de genes
US7588892B2 (en) 2004-07-19 2009-09-15 Entelos, Inc. Reagent sets and gene signatures for renal tubule injury
US7467118B2 (en) 2006-01-12 2008-12-16 Entelos Inc. Adjusted sparse linear programming method for classifying multi-dimensional biological data
KR100829867B1 (ko) * 2006-12-05 2008-05-16 한국전자통신연구원 유전자 발현 프로파일을 이용한 유전자 군집화 방법
KR100964181B1 (ko) * 2007-03-21 2010-06-17 한국전자통신연구원 유전자 어휘 분류체계를 이용한 유전자 발현 프로파일군집화 방법 및 그 장치
KR101394339B1 (ko) * 2012-03-06 2014-05-13 삼성에스디에스 주식회사 시드의 길이를 고려한 염기 서열 처리 시스템 및 방법
ES2933028T3 (es) * 2014-01-14 2023-01-31 Fabric Genomics Inc Métodos y sistemas para análisis genómico
CN108664769B (zh) * 2017-03-31 2021-09-21 中国科学院上海营养与健康研究所 基于癌症基因组和非特异性基因标签的药物重定位方法
CN107723343B (zh) * 2017-11-28 2021-03-23 宜昌美光硅谷生命科技股份有限公司 一种基因定量分析的方法
CN109935341B (zh) * 2019-04-09 2021-04-13 北京深度制耀科技有限公司 一种药物新适应症的预测方法及装置
CN113539366A (zh) * 2020-04-17 2021-10-22 中国科学院上海药物研究所 一种用于预测药物靶标的信息处理方法及装置
CN112687370B (zh) * 2020-12-28 2023-12-22 北京博奥晶方生物科技有限公司 一种电子药方生成方法、装置及电子设备

Family Cites Families (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO1994017208A1 (en) * 1993-01-21 1994-08-04 President And Fellows Of Harvard College Methods and diagnostic kits utilizing mammalian stress promoters to determine toxicity of a compound
US5777888A (en) * 1995-08-09 1998-07-07 Regents Of The University Of California Systems for generating and analyzing stimulus-response output signal matrices
US5569588A (en) * 1995-08-09 1996-10-29 The Regents Of The University Of California Methods for drug screening
WO1997013877A1 (en) * 1995-10-12 1997-04-17 Lynx Therapeutics, Inc. Measurement of gene expression profiles in toxicity determination
US6156502A (en) * 1995-12-21 2000-12-05 Beattie; Kenneth Loren Arbitrary sequence oligonucleotide fingerprinting

Also Published As

Publication number Publication date
AU4075199A (en) 1999-11-29
IL139567A0 (en) 2002-02-10
KR20010052341A (ko) 2001-06-25
CN1309722A (zh) 2001-08-22
WO1999058720A1 (en) 1999-11-18
EP1076722A1 (en) 2001-02-21
JP2002514804A (ja) 2002-05-21
CA2331510A1 (en) 1999-11-18

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Owner name: ROSETTA INPHARMATICS, INC.

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