AU2021200253A1 - Treatment of AMD using AAV sFlt-1 - Google Patents

Treatment of AMD using AAV sFlt-1 Download PDF

Info

Publication number
AU2021200253A1
AU2021200253A1 AU2021200253A AU2021200253A AU2021200253A1 AU 2021200253 A1 AU2021200253 A1 AU 2021200253A1 AU 2021200253 A AU2021200253 A AU 2021200253A AU 2021200253 A AU2021200253 A AU 2021200253A AU 2021200253 A1 AU2021200253 A1 AU 2021200253A1
Authority
AU
Australia
Prior art keywords
seq
pharmaceutical composition
sflt
human subject
administering
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2021200253A
Inventor
Thomas W. Chalberg Jr.
Ian J. Constable
Chooi-may LAI
P. Elizabeth Rakoczy
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Avalanche Australia Pty Ltd
Original Assignee
Avalanche Australia Pty Ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Avalanche Australia Pty Ltd filed Critical Avalanche Australia Pty Ltd
Priority to AU2021200253A priority Critical patent/AU2021200253A1/en
Publication of AU2021200253A1 publication Critical patent/AU2021200253A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K39/395Antibodies; Immunoglobulins; Immune serum, e.g. antilymphocytic serum
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61BDIAGNOSIS; SURGERY; IDENTIFICATION
    • A61B3/00Apparatus for testing the eyes; Instruments for examining the eyes
    • A61B3/02Subjective types, i.e. testing apparatus requiring the active assistance of the patient
    • A61B3/028Subjective types, i.e. testing apparatus requiring the active assistance of the patient for testing visual acuity; for determination of refraction, e.g. phoropters
    • A61B3/032Devices for presenting test symbols or characters, e.g. test chart projectors
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K31/00Medicinal preparations containing organic active ingredients
    • A61K31/70Carbohydrates; Sugars; Derivatives thereof
    • A61K31/7088Compounds having three or more nucleosides or nucleotides
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K35/00Medicinal preparations containing materials or reaction products thereof with undetermined constitution
    • A61K35/66Microorganisms or materials therefrom
    • A61K35/76Viruses; Subviral particles; Bacteriophages
    • A61K35/761Adenovirus
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/17Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • A61K38/177Receptors; Cell surface antigens; Cell surface determinants
    • A61K38/179Receptors; Cell surface antigens; Cell surface determinants for growth factors; for growth regulators
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K38/00Medicinal preparations containing peptides
    • A61K38/16Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • A61K38/43Enzymes; Proenzymes; Derivatives thereof
    • A61K38/45Transferases (2)
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K45/00Medicinal preparations containing active ingredients not provided for in groups A61K31/00 - A61K41/00
    • A61K45/06Mixtures of active ingredients without chemical characterisation, e.g. antiphlogistics and cardiaca
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K48/00Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy
    • A61K48/0075Medicinal preparations containing genetic material which is inserted into cells of the living body to treat genetic diseases; Gene therapy characterised by an aspect of the delivery route, e.g. oral, subcutaneous
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K49/00Preparations for testing in vivo
    • A61K49/0004Screening or testing of compounds for diagnosis of disorders, assessment of conditions, e.g. renal clearance, gastric emptying, testing for diabetes, allergy, rheuma, pancreas functions
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K9/00Medicinal preparations characterised by special physical form
    • A61K9/0012Galenical forms characterised by the site of application
    • A61K9/0048Eye, e.g. artificial tears
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P27/00Drugs for disorders of the senses
    • A61P27/02Ophthalmic agents
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P27/00Drugs for disorders of the senses
    • A61P27/02Ophthalmic agents
    • A61P27/10Ophthalmic agents for accommodation disorders, e.g. myopia
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P3/00Drugs for disorders of the metabolism
    • A61P3/08Drugs for disorders of the metabolism for glucose homeostasis
    • A61P3/10Drugs for disorders of the metabolism for glucose homeostasis for hyperglycaemia, e.g. antidiabetics
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P43/00Drugs for specific purposes, not provided for in groups A61P1/00-A61P41/00
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/10Drugs for disorders of the cardiovascular system for treating ischaemic or atherosclerotic diseases, e.g. antianginal drugs, coronary vasodilators, drugs for myocardial infarction, retinopathy, cerebrovascula insufficiency, renal arteriosclerosis
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61PSPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS OR MEDICINAL PREPARATIONS
    • A61P9/00Drugs for disorders of the cardiovascular system
    • A61P9/14Vasoprotectives; Antihaemorrhoidals; Drugs for varicose therapy; Capillary stabilisers
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/435Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from animals; from humans
    • C07K14/705Receptors; Cell surface antigens; Cell surface determinants
    • C07K14/71Receptors; Cell surface antigens; Cell surface determinants for growth factors; for growth regulators
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/08Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses
    • C07K16/081Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from viruses from DNA viruses
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K16/00Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies
    • C07K16/18Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans
    • C07K16/22Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against growth factors ; against growth regulators
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • C12N15/63Introduction of foreign genetic material using vectors; Vectors; Use of hosts therefor; Regulation of expression
    • C12N15/79Vectors or expression systems specially adapted for eukaryotic hosts
    • C12N15/85Vectors or expression systems specially adapted for eukaryotic hosts for animal cells
    • C12N15/86Viral vectors
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N7/00Viruses; Bacteriophages; Compositions thereof; Preparation or purification thereof
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N9/00Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
    • C12N9/10Transferases (2.)
    • C12N9/12Transferases (2.) transferring phosphorus containing groups, e.g. kinases (2.7)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/10Protein-tyrosine kinases (2.7.10)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/10Protein-tyrosine kinases (2.7.10)
    • C12Y207/10001Receptor protein-tyrosine kinase (2.7.10.1)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12YENZYMES
    • C12Y207/00Transferases transferring phosphorus-containing groups (2.7)
    • C12Y207/10Protein-tyrosine kinases (2.7.10)
    • C12Y207/10002Non-specific protein-tyrosine kinase (2.7.10.2), i.e. spleen tyrosine kinase
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K39/00Medicinal preparations containing antigens or antibodies
    • A61K2039/505Medicinal preparations containing antigens or antibodies comprising antibodies
    • AHUMAN NECESSITIES
    • A61MEDICAL OR VETERINARY SCIENCE; HYGIENE
    • A61KPREPARATIONS FOR MEDICAL, DENTAL OR TOILETRY PURPOSES
    • A61K2300/00Mixtures or combinations of active ingredients, wherein at least one active ingredient is fully defined in groups A61K31/00 - A61K41/00
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/20Immunoglobulins specific features characterized by taxonomic origin
    • C07K2317/24Immunoglobulins specific features characterized by taxonomic origin containing regions, domains or residues from different species, e.g. chimeric, humanized or veneered
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/50Immunoglobulins specific features characterized by immunoglobulin fragments
    • C07K2317/55Fab or Fab'
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2317/00Immunoglobulins specific features
    • C07K2317/70Immunoglobulins specific features characterized by effect upon binding to a cell or to an antigen
    • C07K2317/73Inducing cell death, e.g. apoptosis, necrosis or inhibition of cell proliferation
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K2319/00Fusion polypeptide
    • C07K2319/32Fusion polypeptide fusions with soluble part of a cell surface receptor, "decoy receptors"
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2710/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA dsDNA viruses
    • C12N2710/00011Details
    • C12N2710/14011Baculoviridae
    • C12N2710/14041Use of virus, viral particle or viral elements as a vector
    • C12N2710/14044Chimeric viral vector comprising heterologous viral elements for production of another viral vector
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2750/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14141Use of virus, viral particle or viral elements as a vector
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2750/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14141Use of virus, viral particle or viral elements as a vector
    • C12N2750/14142Use of virus, viral particle or viral elements as a vector virus or viral particle as vehicle, e.g. encapsulating small organic molecule
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2750/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14141Use of virus, viral particle or viral elements as a vector
    • C12N2750/14143Use of virus, viral particle or viral elements as a vector viral genome or elements thereof as genetic vector
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N2750/00MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA ssDNA viruses
    • C12N2750/00011Details
    • C12N2750/14011Parvoviridae
    • C12N2750/14111Dependovirus, e.g. adenoassociated viruses
    • C12N2750/14171Demonstrated in vivo effect

Abstract

The present disclosure provides compositions and methods for the prevention or treatment of ocular neovascularization, such as AMD, in a human subject, by administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a vector comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFlt 1) protein to the human subject.

Description

TREATMENT OF AMD USING AAV SFLT-1
10001] This application is a divisional of Australian Patent Application No. 2018211212, which is a divisional of Australian Patent Application No. 2013263159 the entire contents of which are incorporated herein by reference.
SEQUENCE LISTING
[0001A] This application contains a Sequence Listing which has been submitted in ASCII format via EFS-Web and is hereby incorporated by reference in its entirety. Said ASCII copy, created on May 1, 2013, is named 43016-702.201_SL.txt and is 84,779 bytes in size.
BACKGROUND OF THE DISCLOSURE
10002] Age-related macular degeneration (AMD) is one of the leading causes of vision irreversible damage in people over the age of 50 years. AMD is clinically divided into two types as "dry" and "wet". The wet form of AMD may develop rapidly and often results in blindness. The pathological changes of the disease may cause severe visual impairment. The manifestations of AMD may include, but is not limited to retinal pigment epithelial cells (RPE) dysfunction and choroidal neovascularization (CNV) in the macular area. Fluid leakage, RPE or neural epithelial detachment and bleeding from ruptured blood vessels can occur in severe cases. It has been found that many cellular factors play important roles in regulation in CNV generation, among which may include but are not limited to vascular endothelial growth factor (VEGF), VEGF receptor (VEGFR), platelet derived growth factor (PDGF), hypoxia inducible factor (HIF), angiopoietin (Ang) and other cytokines, mitogen-activated protein kinases (MAPK) and others.
10003] One currently approved treatment for wet AMD is Lucentis@. Lucentis@ is an anti angiogenesis agent and targets all isoforms of Vascular Endothelial Growth Factor (VEGF). Clinical studies have shown improved or stable vision in approximately 95% of patients administered Lucentis@, compared to approximately 60% of the patients who received sham treatment. Although Lucentis@ is the first approved agent to improve vision it requires intravitreal administrations every 4 weeks for optimal visual benefit. Eylea@ is another VEGF inhibitor that has been approved to treat wet AMD. Eylea@ also requires frequent intravitreal injections every 4-8 weeks for optimal visual benefit. Intravitreal routes of administration may increase risks for serious complications such as infectious endophthalmitis and retinal detachment, for which cumulative risk increases with repeated administrations. Increased intraocular pressure, traumatic cataract, and retinal tears have also been reported. Finally, with a treatment that is delivered by an ophthalmologist, treatment frequency determines the burden to the patient, physician, and health system in general and to the extent possible should be reduced. The limitations of currently available therapy for CNV secondary to AMD have created a need in the art for alternative approaches which address the high frequency of treatments required and the invasiveness of the treatment procedure. Neovascularization involving VEGF elevation can also lead to other ocular pathologies, such as diabetic retinopathy, diabetic macular edema (DME), and retinal vein occlusions (RVO). These diseases lead to retinal neovascularization and vision loss. VEGF inhibitors such as Lucentis* have demonstrated efficacy in DME and RVO, and, like with wet AMD, require frequent intravitreal administration in order to maintain benefit. SUMMARY OF THE DISCLOSURE
[0004] The present disclosure provides compositions and methods for treating CNV, such as found in the wet form of AMD, in a human subject.
[0005] In one aspect, the present disclosure provides compositions and methods for treating AMD in a human subject, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a VEGF inhibitor to a human subject in need of treatment for AMD. In one aspect, the pharmaceutical composition comprises a recombinant virus. In another aspect, the VEGF inhibitor comprises a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT 1) protein.
[0006] In one aspect, the present disclosure provides compositions and methods for the prevention of CNV in human subjects with AMD, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein to a human subject in need of a treatment for AMD.
[0007] In some aspects, the virus is selected from adeno-associated virus (AAV), helper dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus. In some aspects, the AAV capsid or inverted terminal repeats (ITRs) is selected from the group consisting of: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, rh10, and hybrids thereof.
[0008] In some aspects, the recombinant virus comprises a promoter selected from cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter,
EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
[0009] In some aspects, the recombinant virus comprises an enhancer.
[0010] In some aspects, the recombinant virus comprises an intron or chimeric intron.
[0011] In some aspects, the recombinant virus comprises a SV40 poly A sequence.
[0012] In some aspects, the recombinant virus comprises a human sFlt-1 protein or a functional fragment thereof.
[0013] In some aspects, the recombinant virus is generated from a plasmid comprising either an ampicillin resistance marker or a non-ampicillin resistance marker.
[0014] In some aspects, the recombinant virus comprises bacterial regulatory sequences such as a T7 RNA polymerase promoter.
[0015] In some aspects, the recombinant virus lacks bacterial regulatory sequences such as a T7 RNA polymerase promoter.
[0016] In some aspects, the recombinant virus comprises a regulatory nucleic acid fragment that is capable of directing selective expression of the sFlt-1 protein or a functional fragment thereof in an eye cell.
[0017] In some aspects, the pharmaceutical composition comprises about I x 106 to about I x 1015 recombinant viral vector genomes, about 1 x 107 to about 1 x 1014 recombinant viral vector genomes, about 1 x 108 to about I x 10- recombinant viral vector genomes, about I x 109 to about 3 x 10 recombinant viral vector genomes, or about I x 10" to about 3 x 10' recombinant viral vector genomes.
[0018] In some aspects, the pharmaceutical composition is administered via subretinal injection.
[0019] In some aspects, the method further comprises administering to the human subject a pharmaceutically effective amount of a VEGF inhibitor. In some aspects, the VEGF inhibitor comprises an antibody against VEGF or a functional fragment thereof. In some aspects, the VEGF inhibitor comprises ranibizumab. In some aspects, the pharmaceutical composition is administered at least 5, 6, 7, or 8 days after the administering the VEGF inhibitor. In some aspects, the pharmaceutical composition is administered within 30, 60, or 90 days of administering the VEGF inhibitor.
[0020] In some aspects, the VEGF inhibitor is administered for 1 time prior to administering the pharmaceutical composition comprising the recombinant virus and 1 to 2 times following administration. In some aspects, the VEGF inhibitor is administered for at least 2 times prior to administering the pharmaceutical composition and 1 to 2 times following administration. In some aspects, the VEGF inhibitor is administered over a period of 6 to 7 weeks.
[0021] In some aspects the VEGF inhibitor is an anti-VEGF antibody, such as bevacizumab or ranibizumab. In other aspects the VEGF inhibitor is a soluble receptor, fusion protein, or fragment thereof, such as aflibercept or sFLTO1.
[0022] In some aspects, the AMD is wet AMD.
[0023] In some aspects, AMD is dry AMD.
[0024] In some aspects, the human subject is at risk for wet AMD.
[0025] In some aspects, the human subject presents symptoms of early stage wet AMD.
[0026] In some aspects, at least 3, 5, 10, 15, or 20 treatments of a different VEGF inhibitor for the treatment of AMD have been previously administered to said human subject
[0027] In some aspects, best corrected visual acuity (BCVA) did not improve after said treatment with ranibizumab.
[0028] In some aspects, best corrected visual acuity (BCVA), as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, improves by more than 1 line after said treatment with ranibizumab.
[0029] In some aspects, human subject presents symptoms of early stage dry AMD.
[0030] In some aspects, treatment is administered at a frequency of at least biannually.
[0031] In some aspects, administering step is carried out in said human subject where the subject is age 20, 40, 50, 55, or 65 years or older.
[0032] In some aspects, administration is to a site outside the fovea.
[0033] In some aspects, administration is to one or more cells of the subretinal space of the central retina.
[0034] In some aspects, administration is to one or more cells of the outer macula.
[0035] In some aspects, administration is to one or more cells of the inner macula.
[0036] In some aspects, administration is to retinal pigment epithelial cells.
[0037] In some aspects, administration does not adversely affect central retinal function or central retinal structure.
[0038] In some aspects, administration does not increase systemic levels of VEGF inhibitor in the human subject.
[0039] In some aspects, administration does not increase systemic levels of sFlt-1 in the human subject.
[0040] In some aspects, administering step is carried out simultaneously, or sequentially in both eyes
[0041] In some aspects, administering step is carried out in one eye.
[0042] In some aspects, administering step is carried out in one eye when fellow eye presents symptoms of AMD.
[0043] In some aspects, administering step is carried out in a human subject resistant to penicillin.
[0044] In some aspects, administering step is carried out in a human subject sensitive to penicillin.
[0045] In some aspects, administering step is carried out in a human subject allergic to penicillin.
[0046] In some aspects, administering step is carried out in a human subject not allergic to penicillin.
[0047] In some aspects, administering step causes no inflammation of the vitreous is observed by biomicroscopy (BE) and indirect opthalmoscopy (IOE) following the administering step.
[0048] In some aspects, administering step does not cause a cytotoxic T cell.
[0049] In some aspects, administering step does not cause a cytotoxic T cell response a measure by in increase in cytotoxic T cells of less than 10% greater than the baseline range.
[0050] In some aspects, T cells do not display an activated effector phenotype following the administering step.
[0051] In some aspects, best corrected visual acuity (BCVA) improves by 1, 2, 3, 4 or 5 lines or more. as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, following the administering step.
[0052] In some aspects, reduction in neovascularization is observed using Fluorscein Angiography (FA) following the administering step
[0053] In some aspects, frequency of administration of ranibizumab is reduced to less than 12 doses per year. In some aspects, frequency of administration of aflibercept is reduced to less than 6 doses per year.
[0054] In some aspects, ranibizumab or aflibercept or other VEGF inhibitor is administered with reduced frequency or no longer administered.
[0055] In some aspects, the virus comprises a sFLT-1 gene or a functional fragment thereof with >90% sequence homology to the human sFLT-1 gene sequence.
[0056] In some aspects, the virus administered comprises a sFLT-1 gene, gene variant or gene fragment.
[0057] In some aspects, no vector is detected in the human subject's tear, blood, saliva or urine samples 7, 14, 21 or30 days after administering the pharmaceutical composition.
[0058] In some aspects, the presence of the viral vector is detected by qPCR or ELISA.
[0059] In some aspects, the sFLT-1 protein levels in the vitreous of the human subject is about 500 - 5,000 pg/ml, about 600 - 4,000 pg/ml, about 800 - 3,000 pg/ml about 900 2,000 pg/ml, or about 1,000 - 1,800 pg/ml 7, 14, 21 or 30 days after administering the pharmaceutical composition. In some aspects, the sFlt-1 protein level, which may also be called the sFlt-1 protein concentration, in the vitreous of the human subject is elevated at 7, 14, 31, 30, 60, 90, 180, 270 and 365 days after administering the pharmaceutical composition.
[0060] In some aspects, the human subject shows no clinically significant retinal toxicity as assessed by serial ophthalmic examinations over least a two months period.
[0061] In some aspects, no superficial, anterior segment or vitreous inflammatory signs are present in the human subject over least a two months period.
[0062] In some aspects, the human subject does not require rescue treatment with a VEGF inhibitor at least 120 days post administering the recombinant viruses. In some aspects, the human subject does not require rescue treatment with a VEGF inhibitor at least 180 days or at least 210 days post administering the recombinant viruses. In some aspects, the human subject does not require rescue treatment with a VEGF inhibitor for at least 270 days after administering the recombinant viruses. In some aspects, the human subject does not require rescue treatment with a VEGF inhibitor for at least 365 days after administering the recombinant viruses.
[0063] In some aspects, there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at least 180 days or at least 210 days post said administering the recombinant viruses. In some aspects, there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at least 365 days after administering the recombinant viruses.
[0064] In another aspect, the present disclosure provides a pharmaceutical composition comprising about 1 x 106 to about 1 x 1015 recombinant viruses, wherein each of the recombinant virus comprises a nucleic acid encoding soluble Fms-related tyrosine kinase 1 (sFlt-1) protein.
[0065] In some aspects, the disclosure provides for a method for the treatment or prophylaxis of ocular neovascularization in a human subject comprising: administering to one or more subretinal sites a pharmaceutically effective amount of a pharmaceutical composition comprising a nucleic acid encoding sFLT-1 to a human subject in need of treatment.
[00661 In some aspects, the disclosure provides for a human subject that has or is suspected of having one or more conditions selected from the group consisting of: age related macular degeneration (AMD), wet-AMD, dry-AMD, retinal neovascularization, choroidal neovascularization and diabetic retinopathy. In some cases the human subject has or is suspected of having one or more conditions selected from the group consisting of: proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal vein occlusion, diabetic macular edema, diabetic retinal ischemia, ischernic retinopathy and diabetic retinal edema.
[0067] In some aspects, the disclosure provides for a pharmaceutical composition comprising a recombinant virus, the virus selected from the group consisting of: adeno associated virus (AAV), adenovirus, helper-dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
[0068] In some aspects, the disclosure provides for a nucleic acid encoding the sFLT-1 which is operatively linked to a promoter selected from the group consisting of: cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
[00691 In some aspects, the disclosure provides sFLT-1 nucleic acid, wherein the sFLT-1 encodes at least 1 dimerization domain. In some cases the sFLT-1 nucleic acid does not contain a prokaryotic regulatory sequence. In some cases the sFLT-1 nucleic acid does contain a prokaryotic regulatory sequence.
[0070] In some aspects, the disclosure provides for a pharmaceutical composition comprising a virus or a plasmid.
[0071] In some aspects, the disclosure provides for administration of one or more treatments of a VEGF inhibitor to the human subject. In some cases the VEGF inhibitor is administered within 30, 90, or 180 days of administration of the pharmaceutical composition. In some cases the pharmaceutical composition of the disclosure and VEGF inhibitor are administered at least 24 hours apart.
[0072] In some aspects, the disclosure provides for a pharmaceutical composition administered to a human subject at least 55 years old.
[0073] In some aspects, the disclosure provides for administering the pharmaceutical composition outside the fovea.
[0074] In some aspects, the disclosure provides for the best corrected visual acuity (BCVA) of the human subject, to improve by at least 1, 2, 3, 4 or 5 lines as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters following the administering of the pharmaceutical composition.
[0075] In some aspects, the disclosure provides for the best corrected visual acuity (BCVA) to decrease by fewer than 15 letters as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) following the administering of the pharmaceutical composition.
[0076] In some aspects, the disclosure provides for administering the pharmaceutical composition under conditions selected from the group consisting of: administering the pharmaceutical composition in one eye, administering the pharmaceutical composition sequentially in two eyes, and administering the pharmaceutical composition simultaneously in two eyes.
[0077] In some aspects, the disclosure provides for a reduction in neovascularization as observed by a Fluorscein Angiography (FA) follows the administering of the pharmaceutical composition.
[0078] In some aspects, the disclosure provides for no superficial, anterior segment or vitreous inflammatory signs are present in the human subject at least I week after injection.
[0079] In some aspects, the disclosure provides for no superficial, anterior segment or vitreous inflammatory signs are present in the human subject at Iweek or at 3, 6, 9 or 12 months after administration of the pharnaceutical composition.
[0080] In some aspects, the disclosure provides for the human subject not to require rescue treatment for at least 30, 60, 90, 120, 180, 270 or 365 days after the administering of the pharmaceutical composition.
[0081] In some aspects, the disclosure provides for the human subject to experience no visual acuity loss, IOP elevation, retinal deachrnent, intraocular or systemic imrnurle response after administering the pharmaceutical composition.
[0082] In some aspects, the disclosure provides for no increased anti-AAV cytotoxic T cell response is measured following the administering step.
[0083] In some aspects, the disclosure provides for no virus detected in the human subject's blood, saliva or urine samples, 3, 7, 14, 21 or 30 days after administering the pharmaceutical composition.
[0084] In some aspects, the disclosure provides for sFLT-1 protein levels in the vitreous of the human subject to be about 500 - 5,000 pg/ml, 7, 14, 21, 30, 60, 90, 120, 150, 180, 270 or 365 days after administering the pharmaceutical composition in the human subject.
[0085] In some aspects, the disclosure provides for the human subject to receive one or more treatments with VEGF inhibitors prior to the administering of the pharmaceutical composition.
[0086] In some aspects, the disclosure provides for the human subject as resistant to treatment with VEGF inhibitors.
[0087] In some aspects, the disclosure provides for a human subject who has not previously received a VEGF inhibitor before administering the pharmaceutical composition.
[0088] In some aspects, the disclosure provides for administering of the pharmaceutical composition at a frequency less than 3 times a year in the human subject.
[0089] In some aspects, the disclosure provides for administering of the pharmaceutical composition to reduce the frequency of administration of additional VEGF inhibitor treatments in the human subject.
[0090] In some aspects, the disclosure provides for the concentration of sFLT-1 protein in the vitreous of the human subject to be elevated when measured at 7, 14, 21, 30, 60, , 120, 150, 180, 270 or 365 days after administering of the pharmaceutical composition.
[0091] In some aspects, the disclosure provides for a human subject who has the vitreous gel removed prior to or within one day or one week of the administration of the pharmaceutical composition.
[0092] In some aspects, the disclosure provides for a pharmaceutical composition administered using a vitrectomy system that is smaller than 20 gauge.
[0093] In some aspects, the disclosure provides for a pharmaceutical composition administered using a vitrectomy system that does not require sutures.
[0094] In some aspects, the disclosure provides for a pharmaceutical composition administered using a cannula tip that is smaller than 39 gauge.
[0095] In some aspects, the disclosure provides for a pharmaceutical composition followed by gas/fluid exchange in the vitreous chamber.
[0096] In some aspects, the disclosure provides for the central retinal thickness of the subject not to increase by more than 50 microns, 100 microns, or 250 microns within 12 months following treatment with said pharmacological agent.
[0097] In some aspects, the disclosure provides for geographic atrophy not to progress in the diseased eye of the human subject as compared to the diseased eyes of untreated human subjects.
[0098] In some aspects, the disclosure provides for a pharmaceutical composition comprising recombinant viruses or plasmids comprising a nucleic acid comprising at least 1 promoter sequence operatively linked to a sFLT-1 transgene sequence. In some cases the pharmaceutical composition of the disclosure comprises a promoter sequence and the sFLT-1 transgene sequence separated by a sequence greater than 300 base pairs. In some cases the pharmaceutical composition of the disclosure comprises a promoter sequence and the sFLT-1 transgene sequence separated by a UTR sequence. In some cases the UTR sequence comprises at least 10 base pairs. In some cases, the pharmaceutical composition comprises at least 3 linker sequences each comprising at least 50 base pairs.
[0099] In some aspects, the disclosure provides for a pharmaceutical composition, wherein the sFLT-1 nucleic acid encodes at least 1 dimerization domain.
[00100] In some aspects, the disclosure provides for a pharmaceutical composition comprising a promoter sequence selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22, SEQ ID No. 23, SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32, SEQ ID No. 33, SEQ ID No. 34, SEQ ID No. 35, SEQ ID No. 36, SEQ ID No. 37, SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 340, SEQ ID No. 41, SEQ ID No. 42, SEQ ID No. 43, SEQ ID No. 44, SEQ ID No. 45, SEQ ID No. 46, and SEQ ID No. 47; a sequence encoding a
VEGF inhibitor selected from the group consisting of SEQ ID No. 102, SEQ ID No. 103, SEQ ID No. 104, SEQ ID No. 105, SEQ ID No. 106, SEQ ID No. 107 and SEQ ID No. 108; an intron sequence consisting of SEQ ID No. 48, SEQ ID No. 115, SEQ ID No. 116, SEQ ID No. 117, SEQ ID No. 118, and SEQ ID No. 119; a UTR sequence selected from the group consisting of SEQ ID No. 91, SEQ ID No. 2, SEQ ID No. 92, SEQ ID No. 93, SEQ ID No. 94, SEQ ID No. 95, SEQ ID No. 96, SEQ ID No. 97, SEQ ID No. 98, SEQ ID No. 99, SEQ ID No.100, and SEQ ID No. 101; and a termination sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, and SEQ ID No. 55.
[00101] In some aspects, the disclosure provides for a unit dose of a pharmaceutical composition comprising recombinant viruses of xi106 to Ix101 vector genomes, wherein the recombinant viruses comprise a nucleic acid encoding sFLT-1 operatively linked to a promoter. In some cases the unit dose of the pharmaceutical composition comprises IxI10 to 3x101 vector genomes.
[00102] In some aspects, the disclosure provides for a method of generating a recombinant virus in a cell, the method comprising: introducing into a cell, a nucleic acid comprising at least 1 promoter sequence operatively linked to an sFLT-1 transgene sequence, an ITR sequence, and UTR sequence; and purifying the recombinant virus. In some cases the UTR sequence is a human UTR sequence. In some cases, the nucleic acid sequence does not contain a beta-lactam antibiotic resistance sequence. In some cases the recombinant virus produces sFLT-1 protein in the range of 100-10,000 pg/mL when measured at 72 hours following transduction of HEK293 cells at a multiplicity of infection (MOI) of xi106. In some cases, the recombinant virus inhibits proliferation of human umbilical vascular endothelial (HUVEC) cells.
[00103] In some aspects, the disclosure provides for a cell for generating recombinant viral vector, the cell comprising at least1 promoter polynucleotide sequence operatively linked to a sFLT-1 transgene sequence, an ITR polynucleotide sequence, and a UTR polynucleotide sequence.
[00104] In some aspects, the disclosure provides for a nucleic acid comprising a sequence encoding sFLT-1 for use in treatment or prophylaxis of ocular neovascularization in a human; wherein said use comprises administering directly to a human subject in need thereof, to one or more sub retinal sites in said human subject, an effective amount of a pharmaceutical composition; wherein said pharmaceutical composition comprises said nucleic acid.
[00105] In some aspects, the disclosure provides the nucleic acid for use, wherein said sFLT-1 is an inhibitor of VEGF and wherein said treating or reducing the likelihood of ocular neovascularization occurs as a result of VEGF inhibition.
[00106] In some aspects, the disclosure provides for the nucleic acid for use, wherein the pharmaceutical composition is capable of elevating levels of sFLT-1 protein in the vitreous of the human subject after at least 72 hours after administration of said pharmaceutical composition to said human subject, compared to levels of sFLT-1 protein in the vitreous of said human prior to said administration.
[00107] In some aspects, the disclosure provides for the nucleic acid for use, wherein the nucleic acid comprising said sFLT-1 comprises a recombinant virus, the virus selected from the group consisting of: adeno-associated virus (AAV), adenovirus, helper dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
[00108] In some aspects, the disclosure provides for the nucleic acid for use, wherein the nucleic acid encoding the sFLT-1 is operatively linked to a promoter selected from the group consisting of: cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
[00109] In some aspects, the disclosure provides for the nucleic acid for use, wherein the nucleic acid is packaged by a virus or is plasmid DNA.
[00110] In some aspects, the disclosure provides for the nucleic acid for use, said use further comprising administration of one or more additional VEGF inhibitors to the human subject in need of treatment or reduction, optionally wherein said additional VEGF inhibitor is ranibizumab or bevacizumab.
[00111] In some aspects, the disclosure provides for the nucleic acid for use, said use comprising administering said pharmaceutical composition to a human subject at least 50, , or 65 years old.
[00112] In some aspects, the disclosure provides for the nucleic acid for use, said use comprising administering said pharmaceutical composition outside the fovea.
[00113] In some aspects, the disclosure provides for the nucleic acid for use, wherein the best corrected visual acuity (BCVA) of the human subject in need of treatment, improves by at least 1, 2, 3, 4 or 5 lines as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters following the administering of an effective amount of the pharmaceutical composition.
[00114] In some aspects, the disclosure provides for the nucleic acid for use, wherein the administering of the pharmaceutical composition is performed at a frequency at least once per 3, 6, 9, 12, 18, or 24 months in a human subject in need of treatment.
[00115] In some aspects, the disclosure provides for the nucleic acid for use, wherein the administering of the pharmaceutical composition is performed at a frequency less than 3 times a year in the human subject or is performed at a frequency reducing the frequency of administration of additional VEGF inhibitor treatments in the human subject.
[00116] In some aspects, the disclosure provides for a unit dose of pharmaceutical composition comprising about ixi06 to Ix101 or IxI10 to 3x101 vector genomes. In some aspects, the recombinant viruses comprise a nucleic acid encoding sFLT-1, or a functional fragment thereof, operatively linked to a promoter.
[00117] In some aspects, the disclosure provides for a method for the treatment or prophylaxis of ocular neovascularization in a human subject comprising: administering to one or more subretinal sites a pharmaceutically effective amount of a pharmaceutical composition comprising a nucleic acid encoding a VEGF inhibitor to a human subject in need of treatment. In some aspects, the VEGF inhibitor is an anti-VEGF antibody or a functional fragment thereof. In some aspects, the VEGF inhibitor is a soluble receptor, fusion protein, or a functional fragment thereof. INCORPORATION BY REFERENCE
[00118] All publications, patents, and patent applications mentioned in this specification are herein incorporated by reference to the same extent as if each individual publication, patent, or patent application was specifically and individually indicated to be incorporated by reference. BRIEF DESCRIPTION OF THE DRAWINGS
[00119] The novel features of the disclosure are set forth with particularity in the appended claims. A better understanding of the features and advantages of the present disclosure will be obtained by reference to the following detailed description that sets forth illustrative aspects, in which the principles of the disclosure are utilized, and the accompanying drawings of which:
[00120] FIG. 1 depicts the schematic representation of an exemplary plasmid.
[00121] FIG. 2 depicts expression, secretion and biological activity of sFLT-1 from rAAV.sflt-1-transduced cells. (a) Western blot analysis of conditioned media from Ad.sFlt-1-transduced 293 cells (lane 1), rAAV.sFlt-1-transduced D407 cells (lane 2), rAAV.sFlt-1-transduced 293 cells (lane 3), and AAV.gfp-transduced D407 cells (lane 4). (b) Inhibition of VEGF-induced HUVEC proliferation by conditioned media from rAAV.sFlt-1-transduced cells. HUVECs were cultured in starvation medium (column 1), in medium containing recombinant VEGF (column 2), in medium containing VEGF and gL conditioned medium from rAAV.sFlt-1-transduced 293 cells (column 3), in medium containing VEGF and 80 gL conditioned medium from rAAV.sFt-1-transduced 293 cells (column 4), and in medium containing VEGF and 80 gL conditioned medium from rAAV.gfp-transduced 293 cells (column 5). (*P < 0.02, **P <0.005 for differences between rAAV.sFlt-1 plus VEGF, and VEGF only.
[00122] FIG. 3A depicts graph showing human sFlt-1 (hsFLT-1) expression in the vitreous of monkeys injected in the left eyes with rAAV.sFlt-1 (Monkey 8514, 8530, 8523, 8524 and 999), rAAV.gfp (Monkey 8297 and 8532), in both eyes with recombinant sFLT-1 protein (Monkey 8294) and control uninjected monkey (control). Control and monkeys 8294 and 999 were euthanized at 3 months post injection, Monkey 8524 was euthanized at 9 months post injection and monkeys 8297, 8532, 8514, 8530 and 8523 were euthanized at 12 months post injection. * denotes sFLT-1 protein levels that are significantly higher in the rAAV.sFt-1 injected eyes (p < 0.05). FIG. 3B depicts graphs showing hsFLT-1 levels in the rAAV.sFlt-1-injected (999, 8524, 8523, 8530 and 8514), rAAV.gfp-injected (8297 and 8532), recombinant sFlt-1 protein-injected (8294) and uninjected (control) monkeys at different times post injection.
[00123] FIG. 4: Immune Cell Subset Population in mouse eyes. Graphs showing immune cell subset population at the different times post injection.
[00124] FIG. 5: Immune Cell Subset Population in mouse spleens. Graphs showing immune cell subset population at the different times post injection.
[00125] FIG. 6 depicts diagrams comparing Ki67 responses in CD4+ T cells in different mice at different times post injection.
[00126] FIGS. 7A to 7D depict various exemplary replication origin sequences.
[00127] FIGS. 8A to 8F depict the sequences of various exemplary promoters.
[00128] FIGS. 9A to 9C depict the sequence of various exemplary introns, poly A sequences, and ITR regions.
[00129] FIGS. 9D to 9F depict the sequence of various exemplary linker sequences.
[00130] FIGS. 9G to 9H depict the sequence of various exemplary UTR sequences.
[00131] FIGS. 10A to 10C depict the sequence encoding various exemplary anti-VEGF proteins.
[00132] FIG. 11A depicts the amino acid sequence of sFLT-1. FIG 11B depicts the amino acid sequence of sFLT-1 domain 2, a functional fragment of sFLT-1. FIG IC depicts a nucleic acid sequence coding for sFLT-1 domain 2.
[00133] FIGS. 12A to 12B depict the sequences of various exemplary antibiotic resistance genes.
[00134] FIG. 13 depicts the PK of one exemplary composition (rAAV.sFlt-1), wherein it reaches optimal anti-VEGF expression at 6-8 weeks. RBZ is a standard care of anti VEGF, such as ranibizumab. "RBZ rescue" means rescue treatment.
[00135] FIG. 14 depicts ophthalmologic assessment of the patients. Inflammation was evaluated by biomicroscopy (BE) and indirect ophthalmoscopy (IOE). Unrem: unremarkable.
[00136] FIGS. 15A and 15B depict visual acuity results.
[00137] FIG. 16 depicts the measurement of retina thickness of a patient who was given 24 previous Lucentis injections.
[00138] FIG. 17 depicts biodistribution: qPCR for sFLT-1 sequence (copy number detected).
[00139] FIG. 18 depicts biodistribution: AAV capsid measured by ELISA, AAV titer in capsids/mL.
[00140] FIG. 19 depicts biodistribution of sFLT-1 measured by ELISA. Shown are human sFLT-1 concentration (pg/mL).
[00141] FIGS. 20A and 20B depict OCT assessments of patients administered with either low dose rAAV.sFlt-1 (RI, R2, R4) or high dose of rAAV.sFlt-1 (R5, R6 and R8).
[00142] FIGS. 21A and 21B depict visual acuity results of human subjects treated with rAAV.sFt-1 vs. untreated control patients at 180 days following treatment.
[00143] FIGS. 22A and 22B depict visual acuity results of human subjects treated with rAAV.sFlt-1 vs. untreated control patients at 1 year after treatment.
[00144] FIG. 23 depicts a table of human subjects who received Lucentis rescue injections (VEGF inhibitor readministration) by week in a clinical study of rAAV.sFlt-1.
[00145] FIG. 24 depicts visual acuity and SD-OCT images by week for a human subject treated with rAAV.sFlt-1 in a clinical study of rAAV.sFlt-1.
[00146] FIGS. 25A and 25B depicts data on production of human sFlt-1 protein in human embryonic kidney 293 (HEK293) cells as detected by ELISA. rAAV.sFlt-1 was produced using plasmid transfection in HEK293 cells. A second construct, rAAV(bv).sFlt-1, was produced using recombinant baculovirus in Sf9 insect cells. sFlt-1 protein concentration was measured via ELISA after 72 at various MOI. DETAILED DESCRIPTION OF THE DISCLOSURE
[00147] The present disclosure provides compositions and methods for the prevention or treatment of ocular neovascularization, such as AMD, in a human subject, by administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a vector comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFlt-1) protein to the human subject.
[00148] Several aspects of the disclosure are described below with reference to example applications for illustration. It should be understood that numerous specific details, relationships, and methods are set forth to provide a full understanding of the disclosure. One having ordinary skill in the relevant art, however, will readily recognize that the disclosure can be practiced without one or more of the specific details or with other methods. The present disclosure is not limited by the illustrated ordering of acts or events, as some acts may occur in different orders and/or concurrently with other acts or events. Furthermore, not all illustrated acts or events are required to implement a methodology in accordance with the present disclosure.
[00149] The terminology of the present disclosure is for the purpose of describing particular cases only and is not intended to be limiting of compositions, methods and compositions of this disclosure.
[00150] The compositions and methods of this disclosure as described herein may employ, unless otherwise indicated, conventional techniques and descriptions of molecular biology (including recombinant techniques), cell biology, biochemistry, immunochemistry and ophthalmic techniques, which are within the skill of those who practice in the art. Such conventional techniques include methods for observing and analyzing the retina, or vision in a subject, cloning and propagation of recombinant virus, formulation of a pharmaceutical composition, and biochemical purification and immunochemistry. Specific illustrations of suitable techniques can be had by reference to the examples herein. However, equivalent conventional procedures can, of course, also be used. Such conventional techniques and descriptions can be found in standard laboratory manuals such as Green, et al., Eds., Genome Analysis: A Laboratory Manual Series (Vols. I-IV) (1999); Weiner, et al., Eds., Genetic Variation: A Laboratory Manual (2007); Dieffenbach, Dveksler, Eds., PCR Primer: A Laboratory Manual (2003); Bowtell and Sambrook, DNA Microarrays: A Molecular Cloning Manual (2003); Mount, Bioinformatics: Sequence and Genome Analysis (2004); Sambrook and Russell, Condensed Protocols from Molecular Cloning: A Laboratory Manual (2006); and Sambrook and Russell, Molecular Cloning: A Laboratory Manual (2002) (all from Cold Spring Harbor Laboratory Press); Stryer, L., Biochemistry (4th Ed.) W.H. Freeman, N.Y. (1995); Gait, "Oligonucleotide Synthesis: A Practical Approach" IRL Press, London (1984); Nelson and Cox, Lehninger, Principles of Biochemistry, 3rd Ed., W.H. Freeman Pub., New York (2000); and Berg et al., Biochemistry, 5th Ed., W.H. Freeman Pub., New York (2002), all of which are herein incorporated by reference in their entirety for all purposes. Before the present compositions, research tools and methods are described, it is to be understood that this disclosure is not limited to the specific methods, compositions, targets and uses described, as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular aspects only and is not intended to limit the scope of the present disclosure, which will be limited only by appended claims.
[00151] As used herein, the singular forms "a an" and "the" are intended to include the plural forms as well, unless the context clearly indicates otherwise. Furthermore, to the extent that the terms "including", "includes", "having", "has","with", or variants thereof are used in either the detailed description and/or the claims, such terms are intended to be inclusive in a manner similar to the term "comprising".
[00152] Ranges can be expressed herein as from "about" one particular value, and/or to "about" another particular value. When such a range is expressed, another case includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by use of the antecedent "about," it will be understood that the particular value forms another case. It will be further understood that the endpoints of each of the ranges are significant both in relation to the other endpoint, and independently of the other endpoint. The term "about" as used herein refers to a range that is 15% plus or minus from a stated numerical value within the context of the particular usage. For example, about 10 would include a range from 8.5 to 11.5. The term "about" also accounts for typical error or imprecision in measurement of values. I. AMD
[00153] AMD is the leading cause of blindness in patients over the age of 50 and it is characterized by progressive degeneration of the photoreceptors, outer retina, and retinal pigment epithelium at the macula. The advanced "wet" form (neovascular or exudative) of AMD is less common, but may frequently cause a rapid and often substantial loss of central vision in patients. In the wet form of AMD, choroidal neovascularization forms and develops into a network of vessels that may grow under and through the retinal pigment epithelium. As this is accompanied by leakage of plasma and / or hemorrhage into the subretinal space, there could be severe sudden loss of central vision if this occurs in the macula.
[00154] The term "AMD" if not otherwise specified, can be either dry AMD or wet AMD. The present disclosure contemplates treatment or prevention of AMD, wet AMD and/or dry AMD.
[00155] As is previously known in the art, AMD has been shown to have no single cause. This highly complex disease may result from variable contributions including but not limited to age, genetic predisposition, and environment or combination thereof. In humans, for example, established epidemiologic risk factors may include but are not limited to cigarette smoking, diet, female sex, Caucasian race, and a family history of AMD. Because AMD is rare in individuals younger than 50 years, the only required risk factor is age, which implicates the multitude of cellular changes that accompany normal aging in the pathogenesis of AMD.
[00156] The etiologic complexity of AMD is reflected by the relative paucity of effective therapies, preventive strategies, and good animal models with which to study it. Due to the complexity and incomplete characterization of the disease, AMD is incompletely modeled in animals. This is in part due to anatomical differences in animal and primate retinas, as well as the protracted time needed for the disease to develop. Evidence from human molecular genetic and animal studies support the notion that altered homeostasis of a multitude of mechanisms responsible for normal photoreceptor-RPE physiology can precipitate the disease. At least on the molecular level, the disease can be explored in animal models and, in some cases, even in those whose gene defects are not the primary causes of AMD in humans.
[00157] Previous genetic studies as well as in depth pathological analysis, reveals that no simple inheritance pattern for AMD, and no one pathology is common to various AMD animal models. While nonhuman primate models are known in the art to better approximate CNV in humans, than mice or rat models, fundamental differences in retinal anatomy, histology and even genetics of nonhuman primates yield different species specific pathologies.
[00158] Further, and as describe herein, laser photocoagulation may be used to induce CNV, one AMD like symptom in animal models. In some cases, laser treatment ruptures the Bruch's membrane and evokes a fibrovascular proliferative response that originates in the choroid. This response is the basis for modeling choroidal neovascularization in late stage AMD and was developed in rhesus and cynomolgus macaques.
[00159] Using an argon laser, spots are kept small and induced with sufficient power to rupture the Bruch's membrane. This is funduscopically visible as a bubble at the time of photocoagulation. Photocoagulation induces thrombosis of choroidal vessels followed by re-endothelialization 48 hours later and growth of new vessels into the subretinal space by a week. Because newly formed vessels are more permeable, neovascular development can be monitored with fluorescein angiography to assess vessel leakage.
[00160] Spontaneous neovascular involution (indicated by decreased fluorescein leakage) commences at approximately 3 to 7 weeks and then gradually progresses (over a period of approximately 2 to 13 months) until leakage is no longer apparent at the site.
[00161] The extent of new vessel growth compared to poorly vascularized scarring can be variable in all models and is influenced by species, location of injury in the retina, and intensity of the laser beam. The inherent variability in differences of treatment from species to species further supports the idea that no one animal model fully recapitulates AMD in humans.
[00162] Therapies for AMD have changed during the past few years, with the availability of aptamers, antibodies, and soluble receptor decoys that bind the protein VEGF. The VEGF protein or VEGF ligand, has been shown to stimulate the formation of new blood vessels (i.e. angiogenesis) through binding to cellular receptors, including the VEGF receptor. As known in the art, anti-VEGF agents may prevent, to some extent, the neovascularization and angiogenesis that occurs in wet AMD. Intraocular injection of
Macugen@ or Lucentis@ or Eylea@ (anti-VEGF agents) is costly, and in most cases the treatment must be repeated every four to six weeks or every eight weeks in the case of Eylea@. For example, Lucentis is a VEGF antibody fragment which costs about $1950/inj. Monthly. Avastin (VEGF Antibody) is used off label, and Eylea (VEGF trap) costs about, $1850/inj and is administered every second month. All of these medicines share common problems of decreasing pharmacokinetic profile and thus require repeat ocular injections.
[00163] There is a need in the art for a practical, economically viable, longer lasting treatment strategy. The disclosure provides for a novel therapeutic to address some of these needs.
[00164] The present disclosure provides an anti-VEGF molecule, such as sFLT-1, delivered by any suitable vector, (e.g. recombinant viral system) to the retina of a human subject having or suspected of having AMD or related neovascular retinal diseases. In some cases, sFLT-1 may be potent direct binding protein of VEGF. In some cases, sFLT 1 may also block or inhibit VEGF activity.
[00165] For example, as known in the art, sFLT-1 (as described further herein) has been observed to bind to the VEGF protein dimer with a Kd=10 pM.
[00166] The present invention also provides compositions and methods related to rAAV mediated gene delivery into the eye. Long term gene expression in dog eyes (>8 years) has been observed with AAV based system. sFLT-1 mRNA expression in the retina is maintained at least for 18 months. Three human trials for Leber's congenital amarousis have been conducted that demonstrated the safety of an AAV based delivery system in the context of a retinal degenerative disease such as LCA. II. VEGF and Fns-related tyrosine kinase-1 (sFLT-1) protein A. VEGF
[00167] Vascular endothelial growth factor (herein referred to as "VEGF" or "VEGF ligand") is a potent endothelial cell-specific mitogen that plays a key role in physiological blood vessel formation. In some cases, VEGF activity results from the binding of VEGF ligand to one or more VEGF receptors in a cell. The binding of VEGF ligand to VEGF receptor may have numerous downstream cellular and biochemical effects, including but not limited to angiogenesis in tissues. VEGF has been implicated in virtually every type of angiogenic or neovascular disorder, including those associated with cancer, ischemia, and inflammation. Additionally, VEGF has been implicated in eye diseases, including but not limited to ischemic retinopathy, intraocular neovascularization, age-related macular degeneration (AMD), wet-AMD, dry-AMD, retinal neovascularization, diabetic macular edema, diabetic retina ischemia, diabetic retinal edema, proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal vein occlusion. Further, anti-VEGF treatments, including the compositions and methods of this disclosure as described herein, may be used in the treatment of one or more of these diseases described herein.
[00168] Recent data suggests that VEGF is the principal angiogenic growth factor in the pathogenesis of the wet form of AMD.
[00169] VEGF, a 46-kDa homodimeric glycopeptide, is expressed by several different ocular cell types including but not limited to pigment epithelial cells, pericytes, vascular endothelial cells, neuroglia and ganglion cells., In some cases, VEGF is express in specific spatial and temporal patterns during retinal development. In some cases, the human isoforms of VEGF may include proteins of 206, 189, 183, 165, 148, 145, and 121 amino acids per monomer, however the predominant human VEGF isoforms include but are not limited to VEGF121, VEGF165, VEGF189 and VEGF206. These proteins are produced by alternative splicing of the VEGF mRNA and differ in their ability to bind to heparin and to the specific VEGF receptors or coreceptors (neuropilins). The domain encoded by exons 1-5 of the VEGF gene contains information required for the recognition of the known VEGF receptors KDR/FLK-1 and FLT-1. This domain is present in all of the VEGF isoforms. VEGF acts via these receptors, which are high affinity receptor tyrosine kinases, leading to endothelial cell proliferation, migration, and increased vasopermeability.
[00170] VEGF is one of the several factors involved in the complex process of angiogenesis and has a very high specificity for vascular endothelial cells. VEGF is a regulator of physiological angiogenesis during processes such as embryogenesis, skeletal growth and reproductive function, but it has also been implicated in pathological angiogenesis associated with disease such as in cancer, placental disorders and other conditions. The potential biological effects of VEGF may be mediated by specific fms like membrane spanning receptors, FLT-1 and FLK-1/KDR. In some cases, these naturally occurring binding partners of VEGF may affect binding of VEGF to VEGF receptors, thus modulating activation of the VEGF receptor and subsequent downstream pathways.
[00171] As related to cancer, several VEGF inhibitors, including a humanized monoclonal antibody to VEGF (rhuMab VEGF), an anti-VEGFR-2 antibody, small molecules inhibiting VEGFR-2 signal transduction and a soluble VEGF receptor have shown some therapeutic properties.
[00172] As related to intraocular neovascular diseases, such as diabetic retinopathy, retinal vein occlusions, or age related macular degeneration, some VEGF antagonists have shown therapeutic effects, despite the need for frequent administration. B. Anti-VEGF
[00173] The recombinant virus of the present disclosure comprises the sequence encoding an anti-VEGF protein, including, but not limited to the VEGF-binding proteins or functional fragments thereof disclosed in U.S. Pat. Nos 5,712,380, 5,861,484 and 7,071,159 and VEGF-binding fusion proteins disclosed in U.S. Pat. No. 7,635,474. An anti-VEGF protein may also include the sFLT-1 protein as described herein.
[00174] The recombinant viruses or plasmids of the present disclosure may comprise the sequence encoding an anti-VEGF protein, including the naturally occurring protein sFlt-1, as described in US Patent 5,861,484 and that sequence described by SEQ ID NO: 109. It also includes, but is not limited to functional fragments thereof, including sequences of sFlt-1 domain 2 or those set forth in SEQ ID NO: 121, as well as related constructs, such as the VEGF-binding fusion proteins disclosed in U.S. Pat. No. 7,635,474. An anti VEGF protein may also include the sFLT-1 protein as described herein. These sequences can be expressed from DNA encoding such sequences using the genetic code, a standard technique that is understood by those skilled in the art. As can be appreciated by those with skill in the art, due to the degeneracy of the genetic code, anti-VEGF protein sequences can be readily expressed from a number of different DNA sequences.
[00175] "sFlt-1 protein" herein refers to a polypeptide sequence, or functional fragment thereof, with at least 90%, or more, homology to the naturally occurring human sFLT-1 sequence, such that the sFlt-1 protein or polypeptide binds to VEGF and/or the VEGF receptor. Homology refers to the % conservation of residues of an alignment between two sequences (e.g. a s Naturally occurring human sFLT-1 protein may include any suitable variants of sFLT-1, including, but not limited to functional fragments, sequences comprising insertions, deletions, substitutions, pseudofragments, pseudogenes, splice variants or artificially optimized sequences.In some cases, "sFLT-1 protein" maybe at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or
100% homologous to the naturally occurring human sFLT-1 protein sequence. In some cases, "sFLT-1 protein" maybe at most about 90%,91%,92%,93%,94%,95%,96%, 97%, 98%, 9 9 %, 99.9%, 99.99% or 100% homologous to the naturally occurring human sFLT-1 protein sequence. In some cases, "sFLT-1 protein" may be at least about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% spatially homologous to the naturally occurring human sFLT-1 protein conformation. In some cases, "sFLT-1 protein" may be at most about 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, 99.9%, 99.99% or 100% spatially homologous to the naturally occurring human sFLT-1 protein conformation.
[00176] Further, the soluble truncated form of the VEGF receptor FLT-1, sFLT-1, is the only known endogenous specific inhibitor of VEGF. In nature, it is generated by alternative mRNA splicing and lacks the membrane-proximal immunoglobulin-like domain, the transmembrane spanning region and the intracellular tyrosine-kinase domain. Structurally, FLT-1 and sFLT-1 protein may both comprise multiple functional domains. In some variants, FLT and sFLT proteins commonly share 6 interlinked domain; 3 domains involved in dimerization of the protein and 3 domains involved in the binding of a ligand, such as VEGF.
[00177] sFLT-1is a soluble truncated form of the FLT-1 and it is expressed endogenously. As described herein, "soluble" FLT-1, or sFLT-1 refers to FLT-1 that is not restricted to the cellular membrane. Unbound sFLT-1 may diffuse freely in extracellular space or solution.
[00178] sFLT-1 is the only known endogenous specific inhibitor of VEGF. This interaction is specific and can be competed away with100-fold excess unlabeled VEGF. In some cases, the angiostatic activity of sFLT-1 may result from inhibition of VEGF by two mechanisms: i) sequestration of VEGF, to which it binds with high affinity, and ii) formation of inactive heterodimers with membrane-spanning isoforms of the VEGF receptors FLTt- Iand FLK-1/KDR. As known in the art, in vitro binding assays have indicate that sFLT-1 binds VEGF with high affinity and may also inhibit VEGF driven proliferation of human umbilical vein endothelial cells. In animal models for cancer, sFLT-1 inhibits tumor growth. In some cases, sFLT-1 may function in a substoichiometric or dominant negative manner, as excess VEGF in the extracellular space may be prevented from binding and subsequently activating the VEGF receptor. These properties of sFLT-1 have been described in Kendall and Thomas, 1993; Proc Natl
Acad Sci. 90: 10705-10709, which is incorporated herein by reference in its entirety. As is known in the art, functional fragments of sFLT-1 can be used in place of the full-length protein. More specifically, the VEGF binding domain (domain 2), or alternatively domain 2 of sFLT-1 plus domain 3 from sFLT1, KDR, or another family member, can be used to bind and inactivate VEGF. Such functional fragments are described in Wiesmann et al., 1997; Cell, 91: 695-704, which is incorporated herein by reference in its entirety. The terms "sFLT-1" and "a functional fragment of sFLT-1" are equivalent and used here interchangeably. IIl. Vectors and Recombinant Viruses
[00179] The compositions and methods of the disclosure provide for the delivery of a nucleic acid encoding an anti-VEGF (e.g. sFLT-1 proteins) to cells in a human subject or patient in need thereof. In some cases, delivery of the nucleic acid may be referred to as gene therapy.
[00180] The composition and methods of the disclosure provide for any suitable method for delivery of the anti-VEGF nucleic acid (e.g. sFLT-1). In some cases, delivery of the nucleic acid may be performed using any suitable "vector" (sometimes also referred to as "gene delivery" or "gene transfer vehicle). Vector, delivery vehicle, gene delivery vehicle or gene transfer vehicle, may refer to any suitable macromolecule or complex of molecules comprising a polynucleotide to be delivered to a target cell. In some cases, a target cell may be any cell to which the nucleic acid or gene is delivered. The polynucleotide to be delivered may comprise a coding sequence of interest in gene therapy, such as the sFLT-1 gene.
[00181] For example, suitable vectors may include but are not limited to, viral vectors such as adenoviruses, adeno-associated viruses (AAV), and retroviruses, liposomes, other lipid-containing complexes, and other macromolecular complexes capable of mediating delivery of a polynucleotide to a target cell.
[00182] In some cases, a vector may be an organic or inorganic molecule. In some cases, a vector may be small molecule (i.e. <5 kD), or a macromolecule (i.e. > 5kD). For example a vector may include but is not limited to inert, non-biologically active molecules such as metal particles. In some cases, a vector may be gold particles.
[00183] In some cases a vector may comprise a biologically active molecule. For example, vectors may comprise polymerized macromolecules such as dendrimers.
[00184] In some cases, a vector may comprise a recombinant viral vector that incorporates one or more nucleic acids. As described herein, nucleic acids may refer to polynucleotides. Nucleic acid and polynucleotide may be used interchangeably. In some cases nucleic acids may comprise DNA or RNA. In some cases, nucleic acids may include DNA or RNA for the expression of sFLT-1. In some cases RNA nucleic acids may include but are not limited to a transcript of a gene of interest (e.g. sFLT-1), introns, untranslated regions, termination sequences and the like. In other cases, DNA nucleic acids may include but are not limited to sequences such as hybrid promoter gene sequences, strong constitutive promoter sequences, the gene of interest (e.g. sFLT-1), untranslated regions, termination sequences and the like. In some cases, a combination of DNA and RNA may be used.
[00185] As described in the disclosure herein, the term "expression construct" is meant to include any type of genetic construct containing a nucleic acid or polynucleotide coding for gene products in which part or all of the nucleic acid encoding sequence is capable of being transcribed. The transcript may be translated into a protein. In some cases it may be partially translated or not translated. In certain aspects, expression includes both transcription of a gene and translation of mRNA into a gene product. In other aspects, expression only includes transcription of the nucleic acid encoding genes of interest.
[00186] In one aspect, the present disclosure provides a recombinant virus, such as adeno associated virus (rAAV) as a vector to mediate the expression of sFLT-1.
[00187] In some cases, the viral vector of the disclosure may be measured as pfu (plaque forming units). In some cases, the pfu of recombinant virus, or viral vector of the compositions and methods of the disclosure may be about 108 to about 5 x 1010 pfu. In some cases, recombinant viruses of this disclosure are at least about Ix108, 2x108, 3x108, 4x108, 5x108, 6x108, 7x108, 8x108, 9x108, IxI9, 2x109, 3x109, 4x109, 5x109, 6x109, 7x10 9,8x10 9 , 9x10 9, 1xO1 0,2x0 10,3x10 1 ,4x1010,and 5xl0 10 pfu. In some cases, recombinant viruses of this disclosure are at most about Ix108, 2x10 , 3x108, 4x108, x108, 6x108, 7x108, 8x108, 9x108, IxI9, 2x109, 3x109, 4x109, 5x109, 6x109, 7x109, 8x10 9 , 9x10 9,1x 10 ,2x010 ,3x10 10 ,4x101 0 ,and 5x 10 pfu.
[00188] In some cases, the viral vector of the disclosure may be measured as vector genomes. In some cases, recombinant viruses of this disclosure are 1x10 to 3x102 vector gen some cases, recombinant viruses of this disclosure re tx109 to 3x1 vectorgenomes.ome cases, recombinant viruses of this disclosure are 1x108 to 3x1014 vector genomes. In some cases, recombinant viruses of the disclosure are at least about xI1, 1x1021x10 3 1x10 4 , 1x10 5, 1x10 6, 1x10 7 , 1x10 8 , 1x10 9 , 1x101 1x101 1 IxI1, IxI1, IxI014, IxI1, 1x10 , 1x10, 17and IxI18 vector genomes. In some cases, recombinant viruses of this disclosure are Ix108 to 3x1014 vector genomes. In some cases, recombinant viruses of the disclosure are at most about1x10 1,1x10 2, 1x10 3
, XI 4' I1x10G, 1x104, I 5' 1x10G, XI 6' I1x107, I 7' 1x10G, 8X1 1x10G, 9X1 I1x10°, I 10' I1x10", 11' I1x10 12', I1x10 I 13', I1x104, I 14' 1x10 015
IxI016, 1x10 17 ,and IxI18 vector genomes.
[00189] In some cases, the viral vector of the disclosure may be measured using multiplicity of infection (MOI). In some cases, MOI may refer to the ratio, or multiple of vector or viral genomes to the cells to which the nucleic may be delivered. In some cases, the MOI may be 1x10 6 . In some cases, the MOI may be1x10 5-1x10 7 . In some cases, the MOI may be xi104 -ix108. In some cases, recombinant viruses of the disclosure are at least about x101, 1x102, 1x10 3, 1x10 4 , 1x10 5, 1x10 6, 1x10 7 , 1x10 8 , 1x10 9 , 1x101 1x101 1 IxI1, IxI1, IxI014, IxI1, 1x10 , 1x10,17and IxI18 MOI. Insome cases, recombinant viruses of this disclosure are Ix10' to 3x1014 MOI. In some cases, recombinant viruses of the disclosure are at most about Ix101, ixi02, ixi03, ixi04, I 5' 1x10G, I 1x10G, XI 6' I1x107, I 7' 1x10G, 8X1 1x10G, 9X1 I1x10G°, I 10' I1x10", 11' I1x10 I 12', I1x10 I 13', I1x104, I 14' I1x10 015', I1x10 16
1x10 1 7 ,and IxIG MOI.
[00190] In some aspects the nucleic acid may be delivered without the use of a virus (i.e. with a non-viral vector), and may be measured as the quantity of nucleic acid. Generally, any suitable amount of nucleic acid may be used with the compositions and methods of this disclosure. In some cases, nucleic acid may be at least about 1 pg, 10 pg, 100 pg, 1 pg,10pg,100pg,200pg,300pg,400pg,500pg,600pg,700pg,800pg,900pg,1gg, gg,100gg,200gg,300gg,400gg,500gg,600gg,700gg,800gg,900gg,1ng,10 ng, 100 ng, 200 ng, 300 ng, 400 ng, 500 ng, 600 ng, 700 ng, 800 ng, 900 ng, 1 mg, 10 mg, 100 mg, 200 mg, 300 mg, 400 mg, 500 mg, 600 mg, 700 mg, 800 mg, 900 mg 1 g, 2 g, 3 g, 4 g, or 5g. In some cases, nucleic acid may be at most about 1 pg, 10 pg, 100 pg, 1 pg, pg,100pg,200pg,300pg,400pg,500pg,600pg,700pg,800pg,900pg,1gg,10 gg, 100 gg, 200 gg, 300 gg, 400 gg, 500 gg, 600 gg, 700 gg, 800 gg, 900 gg, 1 ng, 10 ng, 100 ng, 200 ng, 300 ng, 400 ng, 500 ng, 600 ng, 700 ng, 800 ng, 900 ng, 1 mg, 10 mg, 100 mg, 200 mg, 300 mg, 400 mg, 500 mg, 600 mg, 700 mg, 800 mg, 900 mg, 1 g, 2 g, 3 g, 4 g, or 5g.
[00191] In some aspects, a self-complementary vector (sc) may be used. The use of self complementary AAV vectors may bypass the requirement for viral second-strand DNA synthesis and may lead to greater rate of expression of the transgene protein, as provided by Wu, Hum Gene Ther. 2007, 18(2):171-82, incorporated by reference herein.
[00192] In some aspects, several AAV vectors may be generated to enable selection of the most optimal serotype, promoter, and transgene.
[00193] In some cases, the vector can be a targeted vector, especially a targeted vector that selectively binds to a specific cell, such as cancer cells or tumor cells or eye cells. Viral vectors for use in the disclosure can include those that exhibit low toxicity to a target cell and induce production of therapeutically useful quantities of the anti-VEGF protein in a cell specific manner.
[00194] The compositions and methods of the disclosure provide for any suitable viral nucleic acid delivery systems including but not limited to use of at least one of an adeno associated virus (AAV), adenovirus, helper-dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus. Preferably, the viral vector comprises a strong eukaryotic promoter operably linked to the polynucleotide e.g., a cytomegalovirus (CMV) promoter.
[00195] Generally, any suitable viral vectors may be engineered to be optimized for use with the compositions and methods of the disclosure. For example, viral vectors derived from adenovirus (Ad) or adeno-associated virus (AAV) may be used. Both human and non-human viral vectors can be used and the recombinant viral vector can be altered such that it may be replication-defective in humans. Where the vector is an adenovirus, the vector can comprise a polynucleotide having a promoter operably linked to a gene encoding the anti-VEGF protein and is replication-defective in humans.
[00196] To combine advantageous properties of two viral vector systems, hybrid viral vectors may be used to deliver a nucleic acid encoding a sFLT-1 protein to a target cell or tissue. Standard techniques for the construction of hybrid vectors are well-known to those skilled in the art. Such techniques can be found, for example, in Sambrook, et al., In Molecular Cloning: A laboratory manual. Cold Spring Harbor, N.Y. or any number of laboratory manuals that discuss recombinant DNA technology. Double-stranded AAV genomes in adenoviral capsids containing a combination of AAV and adenoviral ITRs may be used to transduce cells. In another variation, an AAV vector may be placed into a
"gutless", "helper-dependent" or "high-capacity" adenoviral vector. Adenovirus/AAV hybrid vectors are discussed in Lieber et al., J. Virol. 73:9314-9324, 1999. Retrovirus/adenovirus hybrid vectors are discussed in Zheng et al., Nature Biotechnol. 18:176-186, 2000.
[00197] Retroviral genomes contained within an adenovirus may integrate within the target cell genome and effect stable gene expression.
[00198] Replication-defective recombinant adenoviral vectors can be produced in accordance with known techniques. See, Quantin, et al., Proc. Natl. Acad. Sci. USA, 89:2581-2584 (1992); Stratford-Perricadet, et al., J. Clin. Invest., 90:626-630 (1992); and Rosenfeld, et al., Cell, 68:143-155 (1992).
[00199] Additionally preferred vectors may include but are not limited to viral vectors, fusion proteins and chemical conjugates. Retroviral vectors include Moloney murine leukemia viruses and HIV-based viruses. In some cases a HIV-based viral vector may be used, wherein the HIV-based viral vector comprises at least two vectors wherein the gag and pol genes are from an HIV genome and the env gene is from another virus. DNA viral vectors may be used. These vectors include pox vectors such as orthopox or avipox vectors, herpesvirus vectors such as a herpes simplex I virus (HSV) vector [Geller, A.I. et al., J. Neurochem, 64: 487 (1995); Lim, F., et al., in DNA Cloning: Mammalian Systems, D. Glover, Ed. (Oxford Univ. Press, Oxford England) (1995); Geller, A.I. et al., Proc Natl. Acad. Sci.: U.S.A.:90 7603 (1993); Geller, A.I., et al., Proc Natl. Acad. Sci USA: 87:1149 (1990)], Adenovirus Vectors [LeGal LaSalle et al., Science, 259:988 (1993); Davidson, et al., Nat. Genet. 3: 219 (1993); Yang, et al., J. Virol. 69: 2004 (1995)] and Adeno-associated Virus Vectors [Kaplitt, M.G., et al., Nat. Genet. 8:148 (1994)], incorporated by reference herein.
[00200] Other viral vectors that can be used in accordance with the present disclosure include herpes simplex virus (HSV)-based vectors. HSV vectors deleted of one or more immediate early genes (IE) are advantageous because they are generally non-cytotoxic, persist in a state similar to latency in the target cell, and afford efficient target cell transduction. Recombinant HSV vectors can incorporate approximately 30 kb of heterologous nucleic acid.
[00201] Retroviruses, such as C-type retroviruses and lentiviruses, may also be used in the disclosure. For example, retroviral vectors may be based on murine leukemia virus (MLV)., as provided by Hu and Pathak, Pharmacol. Rev. 52:493511, 2000 and Fong et al., Crit. Rev. Ther. Drug Carrier Syst. 17:1-60, 2000, incorporated by reference herein. MLV-based vectors may contain up to 8 kb of heterologous (therapeutic) DNA in place of the viral genes. The heterologous DNA may include a tissue-specific promoter and a anti VEGF protein nucleic acid. In methods of delivery to neoplastic cells, it may also encode a ligand to a tissue specific receptor.
[00202] Additional retroviral vectors may be used including but not limited to replication defective lentivirus-based vectors, including human immunodeficiency (HIV)-based vectors, as provided by Vigna and Naldini, J. Gene Med. 5:308-316, 2000 and Miyoshi et al., J. Virol. 72:8150-8157, 1998, incorporated by reference herein. Lentiviral vectors may be advantageous in that they are capable of infecting both actively dividing and non dividing cells. They may also be highly efficient at transducing human epithelial cells.
[00203] Lentiviral vectors for use in the disclosure may be derived from human and non human (including SIV) lentiviruses. Examples of lentiviral vectors include nucleic acid sequences required for vector propagation as well as a tissue-specific promoter operably linked to an anti-VEGF protein gene. Nucleic acid sequences may include the viral LTRs, a primer binding site, a polypurine tract, att sites, and an encapsidation site.
[00204] A lentiviral vector may be packaged into any suitable lentiviral capsid. The substitution of one particle protein with another from a different virus is referred to as "pseudotyping". The vector capsid may contain viral envelope proteins from other viruses, including murine leukemia virus (MLV) or vesicular stomatitis virus (VSV). The use of the VSV G-protein yields a high vector titer and results in greater stability of the vector virus particles.
[00205] Alphavirus-based vectors, such as those made from semliki forest virus (SFV) and sindbis virus (SIN), may also be used in the disclosure. Use of alphaviruses is described in Lundstrom, K., Intervirology 43:247-257, 2000 and Perri et al., Journal of Virology 74:9802-9807, 2000, incorporated by reference herein.
[00206] Recombinant, replication-defective alphavirus vectors may be advantageous because they are capable of high-level heterologous (therapeutic) gene expression, and can infect a wide target cell range. Alphavirus replicons may be targeted to specific cell types by displaying on their virion surface a functional heterologous ligand or binding domain that would allow selective binding to target cells expressing a cognate binding partner. Alphavirus replicons may establish latency, and therefore long-term heterologous nucleic acid expression in a target cell. The replicons may also exhibit transient heterologous nucleic acid expression in the target cell.
[00207] Pox viral vectors may introduce a gene into the cell's cytoplasm. Avipox virus vectors may result in only a short term expression of the gene or nucleic acid. Adenovirus vectors, adeno-associated virus vectors and herpes simplex virus (HSV) vectors may be used with the compositions and methods of the disclosure . The adenovirus vector may result in a shorter term expression (e.g., less than about a month) than adeno-associated virus, in some aspects, and may exhibit much longer expression. The particular vector chosen may depend upon the target cell and the condition being treated.
[00208] Adeno-associated viruses (AAV) are small non-enveloped single-stranded DNA viruses. They are non-pathogenic human parvoviruses and may be dependent on helper viruses, including adenovirus, herpes simplex virus, vaccinia virus and CMV, for replication. Exposure to wild-type (wt) AAV is not associated or known to cause any human pathologies and is common in the general population, usually occurring in the first decade of life in association with an adenoviral infection.
[00209] As described herein, "AAV" refers to Adeno-associated virus "rAAV" refers to a recombinant adeno-associated virus.
[00210] In some cases, the wild-type AAV encodes rep and cap genes. The rep gene is required for viral replication and the cap gene is required for synthesis of capsid proteins. Through a combination of alternative translation start and splicing sites, the small genome may be able to express four rep and three cap gene products. The rep gene products and sequences in the inverted terminal repeats (145 bp ITRs, which flank the genome) may be critical in this process. To date, 11 serotypes of AAV have been isolated. AAV2 may be used with composition and methods of the disclosure. The compositions and methods of the disclosure provide for use of any suitable AAV serotype. In some aspects, the AAV is selected from the group consisting of: AAV1, AAV2, AAV2.5, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, rh10, and hybrids thereof.
[00211] In some aspects, the present disclosure provides a recombinant virus comprising a nucleic acid further comprising a human form of the truncated, soluble VEGF receptor 1 (sFLT-1) and is named rAAV.sFlt-1. The vector is a recombinant, replicative-deficient adeno-associated viral (rAAV) vector, of serotype 2. In another aspect, the vector is a recombinant, replicative-deficient adeno-associated viral (rAAV) vector, of serotype 2 named rAAV.sFlt-1.
[00212] AAV2 is the most characterized. rAAV2 has been shown to be able to mediate long-term transgene expression in the eyes of many species of animals. In rats, rAAV mediated reporter gene (green fluorescent protein) was still present at 18 months post injection. In monkeys, the same reported gene was present at 17 months post injection. Similarly, high sFLT-1 protein levels were present in the vitreous of rAAV.sFlt-1 injected monkey eyes at 15 months post injection.
[00213] rAAV.sFlt-1 has been tested in animal models for intraocular neovascular disorders. rAAV.sFt-1 appeared to slow the progression of neovascularization in animal models of comeal neovascularization and retinal neovascularization. Interestingly rAAV mediated sFlt-1 indicated some inhibition of neovascularization in a monkey model of choroidal neovascularization (model for the wet form of age related macular degeneration or AMD). In this study, the presence of the rAAV.sFt-1 construct showed low levels of expression of sFLT-1 in the eyes of monkeys and, did not affect the well-being or retinal function of the monkeys. There is no evidence to suggest any safety issues associated with systemic exposure to rAAV.sFlt-1. The overall positive findings and lack of toxicity of rAAV vectors in these studies, as well as the findings with rAAV.sFlt-1 in mammalian models of choroidal neovascularization / AMD provide extensive supporting data that the vector has a favorable safety profile when administered to the eye.
[00214] Despite the ability of rAAV.sFlt-1 to ameleriorate certain symptoms of AMD in the monkey model, sFLT-1 proteins levels are unexpectedly low in the retina. Expression levels of sFLT-1 driven by a constitutively active mammalian promoter have been shown in the art to provide high levels of protein expression in numerous cell types. While not being bound to theory, multiple possibilities may exist for this lower than expected expression level. As a large multi-domain protein, sFLT-1 may be susceptible to premature proteolyitic degradation, poor kinetics of expression, or non optimal sorting. With respect to the latter, as a secreted protein, sFLT-1, as expressed recombinantly in cell, enters the secretory pathway. In retinal cells, including RPE cells, sFLT-1 may be secreted either apically or basolaterally, depending on either ER or Golgi appartis sorting of the protein. In some cases, non-optimal sorting may secrete the molecule to the undesired basolatteral membrane, thus decreasing the concentration of sFLT-1 molecules available to inhibit VEGF signaling and neovascular angiogenesis on the apical surface of the RPE cell layer.
[00215] Additionally, it was unknown in the art how this unexpectedly lower level of sFLT-1 may affect efficacy of the drug towards treatment of the actual AMD disease in humans. While barely elevated levels in the monkey model showed promising signs of ameliorating symptoms of AMD, the monkey animal model for AMD merely serves a surrogate for AMD disease. As described herein, AMD symptoms are artificially induced (via laser) in the retina. While this model is suitable for various analysies, the actual efficacy of the drug in the treatment of symptoms in the monkey model is difficult to extrapolate to treatment of disease in humans. Unexpectedly lower protein levels as generated by the rAAV.sFlt-lfurther increases difficulty in this assessment without experiments in humans.
[00216] In addition, 3 clinical trials on Lebers Congenital Amaurosis (LCA) are being conducted in the UK and USA using the rAAV2 backbone. LCA is a rare inherited eye disease that appears at birth or in the first few months of life and it is characterized by nystagmus, sluggish or no pupillary responses, and severe vision loss or blindness. To date, no safety issues have been reported following injection of the rAAV2 construct into the subretinal space of 6 participants in these two trials. Both teams involved in the clinical trials concluded that their findings have supported further gene therapy studies In LCA patients.
[00217] Given the apparent technical difficulties in generating substantially or sustained elevated levels of sFLT-1 in monkeys, various optimization strategies may be taken to address one or more of the technical issues underlying lower protein levels of sFlt-1 in the retina after introduction of rAAV.sFlt-1. In some cases, optimization strategies, including ones as provided by the composition and methods of this disclosure may include increasing optimizing the sFlt-Iprotein sequence, or domains, introducing control elements to direct correct sorting after expression in retinal cells, or elevating levels of sFlt-lprotein to compensate for any of these possible factors. In some cases, yhe composition and methods of the disclosure provide for specific strategies directed toward the latter, involving the incorporation of specific nucleic acid sequences directed towards improving the elevating protein levels in human retinans over sFlt-1 levels as observed previously in monkey studies. As described herein, various sequences, linkers, UTRs, introns, sFLT-1 variants or combination thereof may be used to elevate protein levels of sFlt-1 protein in the retina after exposure to rAAV.sFt-1.
[00218] Vectors can comprise components or functionalities that further modulate gene delivery and/or gene expression, or that otherwise provide beneficial properties to the targeted cells. Such other components include, for example, components that influence binding or targeting to cells (including components that mediate cell-type or tissue specific binding); components that influence uptake of the vector nucleic acid by the cell; components that influence localization of the polynucleotide within the cell after uptake (such as agents mediating nuclear localization); and components that influence expression of the polynucleotide. Such components also might include markers, such as detectable and/or selectable markers that can be used to detect or select for cells that have taken up and are expressing the nucleic acid delivered by the vector. Such components can be provided as a natural feature of the vector (such as the use of certain viral vectors which have components or functionalities mediating binding and uptake), or vectors can be modified to provide such functionalities.
[00219] Selectable markers can be positive, negative or bifunctional. Positive selectable markers allow selection for cells carrying the marker, whereas negative selectable markers allow cells carrying the marker to be selectively eliminated. A variety of such marker genes have been described, including bifunctional (i.e., positive/negative) markers (see, e.g., Lupton, S., WO 92/08796, published May 29, 1992; and Lupton, S., WO 94/28143, published Dec. 8, 1994). Examples of negative selectable markers may include the inclusion of resistance genes to antibiotics, such as ampicillin or kanamycin. Such marker genes can provide an added measure of control that can be advantageous in gene therapy contexts. A large variety of such vectors are known in the art and are generally available.
[00220] In some cases, nucleic acids encoding antibiotic resistnaces markers may include but are not limited to sequences such as SEQ ID No. 110, SEQ ID No. 111, SEQ ID No. 112, SEQ ID No. 113 or SEQ ID No. 114.
[00221] In many of the viral vectors compatible with methods of the disclosure, one or more promoters can be included in the vector to allow more than one heterologous gene to be expressed by the vector. Further, the vector can comprise a sequence which encodes a signal peptide or other moiety which facilitates expression of the anti-VEGF protein from the target cell.
[00222] The nucleic acid encoding a gene product may be under transcriptional control by a promoter. A "promoter", as provided herein, refers to a suitable DNA sequence required to initiate transcription of a gene. The phrase "under transcriptional control" means that the promoter is in the correct location and orientation in relation to the nucleic acid to control RNA polymerase initiation and expression of the gene. In some cases, promoter may include a "strong" or constitutively active promoter. For example, the CMV promoter may be used as known in the art a constitutively active promoter. In some cases, the CMV promoter may comprise additional regulatory elements for promoting expression. In some cases, the CMV promoter may comprise the initial-early CMV promoter.
[00223] In some cases a promoter may refer to a "weak" promoter, or sequence that yields lower levels of sFLT-1 protein than a strong promoter. In some cases a promoter may be used such that the promoter drives selective expression of sFLT-1. In some cases a promoter or other regulatory elements used in combination with other sequences as described herein may be used to drive selective expression of sFLT-1 in an eye cell, or eye tissue.
[00224] Additionally, "promoter", 104 may also be used herein interchangeably to refer to any additional suitable transcriptional control modules that may be present around the initiation site for RNA polymerases. The compositions and methods of this disclosure may use any suitable promoters and transcriptional control modules for expression of a transgene, 106. Additional transcriptional control modules may include but are not limited to elements such as HSV thymidine kinase (tk) and SV40 early transcription units. Generally, promoters may be composed of discrete functional modules, each consisting of approximately 7-20 bp of DNA, or 20-5000 bp of DNA, and contain one or more recognition sites for transcriptional activator or repressor proteins. The composition and methods of the disclosure provide for any suitable regulatory sequences or combination thereof. In some cases, these transcriptional control module sequences may be referred to or identified as enhancer or repressor sequences.
[00225] At least one module in each promoter functions to position the start site for RNA synthesis. One example is the TATA box. Other example may include some promoters that lack a TATA box, such as the promoter for the mammalian terminal deoxynucleotidyl transferase gene and the promoter for the SV40 late genes, a discrete element overlying the start site itself helps to fix the place of initiation.
[00226] Additional promoter elements regulate the frequency of transcriptional initiation. Generally, these are located in a region 30-110 bp upstream of the start site, although a number of promoters may contain functional elements downstream of the start site as well. The spacing between promoter elements frequently may be flexible, so that promoter function is preserved when elements are inverted or moved relative to one another. In the tk promoter for example, the spacing between promoter elements can be increased to 50 bp apart before activity begins to decline. Depending on the promoter, individual elements may position to function either co-operatively or independently to activate transcription.
[00227] The compositions and methods of the disclosure provide for any suitable sequences for the control of expression of a nucleic acid sequence of interest in the targeted cell. Thus, where a human cell is targeted, sequences may the nucleic acid coding region may be engineered to be adjacent to and under the control of a promoter that is capable of being expressed in a human cell. Generally, such a promoter might include either a human or viral promoter.
[00228] In various aspects of the disclosure, the human cytomegalovirus (CMV) immediate early gene promoter (ie-CMV), the SV40 early promoter, the Rous sarcoma virus long terminal repeat, p-actin, rat insulin promoter and glyceraldehyde-3-phosphate dehydrogenase can be used to obtain a high level of expression of the coding sequence of interest (e.g. sFLT-1). The use of other viral or mammalian cellular or bacterial phage promoters which are well-known in the art to achieve expression of a coding sequence of interest is contemplated as well, provided that the levels of expression are sufficient for a given purpose. In some aspects, prokaryotic regulatory sequences may be present in the vector, such as the T7 RNA polymerase promoter sequence. In other aspects, the vector is free from such regulatory sequences. By employing a promoter with known properties, the level and pattern of expression of the protein of interest following transfection or transformation can be optimized.
[00229] Selection of a promoter that is regulated in response to specific physiologic or synthetic signals can permit inducible expression of the gene product. For example in the case where expression of a transgene, or transgenes when a multicistronic vector is utilized, is toxic to the cells in which the vector is produced in, it may be desirable to prohibit or reduce expression of one or more of the transgenes. Examples of transgenes that may be toxic to the producer cell line are pro-apoptotic and cytokine genes. Several inducible promoter systems are available for production of viral vectors where the transgene product may be toxic. The composition and methods of the disclosure provide for any suitable combination of promoter sequence, regulatory sequences and transgene. In some cases, a combination of sequences may result in no toxicity to the cell. In some cases, a combination of sequences may result in high toxicity to the cell. In some cases, a combination of sequences may result in moderate levels of toxicity in the cell.
[00230] The ecdysone system (Invitrogen, Carlsbad, Calif.) is one such system for transgene expression. This system is designed to allow regulated expression of a gene of interest in mammalian cells. It consists of a tightly regulated expression mechanism that allows little basal level expression of the transgene, but over 200-fold inducibility. The system is based on the heterodimeric ecdysone receptor of Drosophila, and when ecdysone or an analog such as muristerone A binds to the receptor, the receptor activates a promoter to turn on expression of the downstream transgene high levels of mRNA transcripts are attained. In this system, both monomers of the heterodimeric receptor are constitutively expressed from one vector, whereas the ecdysone-responsive promoter which drives expression of the gene of interest is on another plasmid. Engineering of this type of system into the gene transfer vector of interest may be used in the compositions and methods of this disclosure. Cotransfection of plasmids containing the gene of interest and the receptor monomers in the producer cell line would then allow for the production of the gene transfer vector without expression of a potentially toxic transgene. At the appropriate time, expression of the transgene could be activated with ecdysone or muristeron A.
[00231] In some circumstances, it may be desirable to regulate expression of a transgene in a gene therapy vector. For example, different viral promoters with varying strengths of activity may be utilized depending on the level of expression desired. In mammalian cells, the CMV immediate early promoter may be used to provide strong transcriptional activation. Modified versions of the CMV promoter that are less potent have also been used when reduced levels of expression of the transgene are desired. When expression of a transgene in hematopoietic cells is desired, retroviral promoters such as the LTRs (Long Terminal Repeat) from MLV or MMTV are often used. Other viral promoters that may be used depending on the desired effect include SV40, RSV LTR, HIV-1 and HIV-2 LTR, adenovirus promoters such as from the ElA, E2A, or MLP region, AAV LTR, cauliflower mosaic Virus, HSV-TK, and avian sarcoma virus.
[00232] In some aspects, tissue-specific promoters are used to effect transcription in specific tissues or cells so as to reduce potential toxicity or undesirable effects to non targeted tissues. For example, promoters such as the PSA, probasin, prostatic acid phosphatase or prostate-specific glandular kallikrein (hK2) may be used to target gene expression in the prostate.
[00233] In some cases, promoters or regulatory sequence elements may be used to direct selective expression in eye cells or eye tissue. For example, promoter, sequence elements or regulatory sequences found in specific eye cell types, such as retinal pigment epithelial cells, may be used in a suitable expression construct (e.g., the RPE65 or VMD2 promoter).
[00234] The selection of appropriate promoters can be readily accomplished. In some cases a high expression, or strong promoter may be used. An example of a suitable promoter is the 763-base-pair cytomegalovirus (CMV) promoter. The Rous sarcoma virus (RSV) (Davis, et al., Hum Gene Ther 4:151 (1993)) and MMT promoters may also be used. Certain proteins can be expressed using their native promoter. Other elements that can enhance expression can also be included such as an enhancer or a system that results in high levels of expression such as a tat gene and tar element. This cassette can then be inserted into a vector, e.g., a plasmid vector such as, pUC19, pUC118, pBR322, or other known plasmid vectors, that includes, for example, an E. coli origin of replication. See, Sambrook, et al., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor Laboratory press, (1989). Promoters are discussed infra. The plasmid vector may also include a selectable marker such as the -lactamase gene for ampicillin resistance, provided that the marker polypeptide does not adversely affect the metabolism of the organism being treated. The cassette can also be bound to a nucleic acid binding moiety in a synthetic delivery system, such as the system disclosed in WO 95/22618, incorporated by reference herein. Generally promoter sequences and/or any associated regulatory sequences may comprise about at least 150 bp, 200 bp, 300 bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1000 bp, 2000 bp, 3000 bp, 4000 bp,5000 bp or 10000 bp. Promoter sequences and any associated regulatory sequences, may comprise about at most 150 bp, 200 bp, 300 bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1000 bp, 2000 bp, 3000 bp, 4000 bp,5000 bp or 10000 bp.
[00235] In some aspects, the recombinant virus or plasmid comprises a promoter selected from cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, and MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter. Generally, promoter sequences and promoter/enhancer sequences as provided by the present disclosure may include but are not limited to any sequences selected from SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22, SEQ ID No. 23, SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31, SEQ ID No. 32, SEQ ID No. 33, SEQ ID No. 34, SEQ ID No. 35, SEQ ID No. 36, SEQ ID No. 37, SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 340, SEQ ID No. 41, SEQ ID No. 42, SEQ ID No. 43, SEQ ID No. 44, SEQ ID No. 45, SEQ ID No. 46, and SEQ ID No. 47.
[00236] In some aspects, an antibiotic marker is used in the process for production of the recombinant virus. Antibiotic resistance markers may be used to identify positive transgenic cells in the generation of recombinant virus. In some aspects, the antibiotic marker comprises a sequence encoding an antibiotic resistance gene, such as those provided herein including but not limited to sequences shown in Fig. 8A and Fig. 8B. For example markers conferring resistance may include but are not limited to kanamycin, gentamicin, ampicillin, chloramphenicol, tetracycline, doxycycline, or hygromycin. In some aspects, the antibiotic resistance gene is a non-beta-lactam antibiotic resistance gene such as kanamycin.
[00237] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise a sequence encoding a replication origin sequence, such as those provided herein. Origin of replication sequences, generally provide sequence useful for propagating a plasmid. Generally, origin of replication sequences as provided by the present disclosure may include but are not limited to any sequences selected from sequences as provided in Fig. 7A, Fig. 7B, Fig. 7C and Fig. 7D.
[00238] In some aspects, an origin or origin of replication sequences may include but is not limited to sequences such as SEQ ID No. 1, SEQ ID No. 2, SEQ ID No. 3, SEQ ID No. 4, SEQ ID No. 5, SEQ ID No. 6, SEQ ID No. 7, SEQ ID No. 8, SEQ ID No. 9, SEQ ID No. 10, SEQ ID No. 11, SEQ ID No. 12, SEQ ID No. 13, SEQ ID No. 14, SEQ ID No. , SEQ ID No. 16, or SEQ ID No. 17.
[00239] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise an enhancer, such as those provided herein.
[00240] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise a chimeric intron or an intron, 105, such as those provided herein and disclosed in U.S. Pat. No. 7635474, incorporated by reference herein. Intron or chimeric intron may be used interchangeably herein. In some cases, an intron may refer to any sequence that may be transcribed but is not translated. In some cases, an intron may refer to any sequence that be transcribed and is removed from a mature RNA transcript in a cell. In some cases, an intron may comprise about at least 1 bp, 50 bp, 100 bp,150bp,200bp,300bp,400bp,500bp,600bp,700bp,800bp,900bp,1000bp, 2000 bp, 3000 bp, 4000 bp or 5000 bp. In some cases, an intron may comprise may comprise about at least 1 bp, 50 bp, 100 bp, 150 bp, 200 bp, 300 bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1000 bp, 2000 bp, 3000 bp, 4000 bp or 5000 bp. In some cases, an intron may be about 300 bp. In some cases, an intron may be about 200-400 bp. In some cases, a chimeric intron may be about 100 - 500 bp. In some cases, an intron may be about 50 - 200 bp. In some cases, an intron may be either an intact naturally occurring intron or a chimeric intron.
[00241] In some aspects, an intron may include but is not limited to sequences such as SEQ ID No. 48, SEQ ID No. 115, SEQ ID No. 116, SEQ ID No. 117, SEQ ID No. 118, SEQ ID No. 119 or SEQ ID No. 120.
[00242] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise a poly A (polyadenylation) sequence, 107, such as those provided herein (e.g. SV40 poly A sequence.). Generally, any suitable polyA sequence may be used for the desired expression of the transgene (i.e. sFLT-1). For example, in some cases, the present disclosure provides for a sequence comprising SV40 polyA sequence, or portion of SV40 polyA sequence. In some cases, native polyA sequences as found downstream (3'UTR) of the human sFLT-1 gene as found in human genomic sequence may be used. In other cases, polyA sequences as found downstream of genes other than sFLT-1 may be used. In other cases, the present disclosure provides for polyA sequences comprising a combination of one or more polyA sequences or sequence elements. In some cases, no polyA sequence is used. In some cases one or more polyA sequences may be referred to as untranslated regions (UTRs), 3' UTRs, or termination sequences.
[00243] In certain aspects of the disclosure, the use of internal ribosome entry site (IRES) or foot-mouth disease virus (FMDV) elements may be used to create multigene, or polycistronic, messages. IRES elements are able to bypass the ribosome scanning model of 5' methylated Cap dependent translation and begin translation at internal sites. IRES elements from two members of the picornavirus family (poliovirus and encephalomyocarditis) have been described, as well an IRES from a mammalian message. IRES elements can be linked to heterologous open reading frames. Multiple open reading frames can be transcribed together, each separated by an IRES, creating polycistronic messages. By virtue of the IRES element, each open reading frame may be accessible to ribosomes for efficient translation. Multiple genes can be efficiently expressed using a single promoter/enhancer to transcribe a single message. An alternative system for co expression of two proteins in gene therapy delivery vectors is the FMDV 2A system. The FMDV 2A system employs a retroviral plasmid vector in which two genes may be linked to a nucleotide sequence encoding the 2A sequence from the picornavirus foot-and-mouth disease virus. Transcription and translation gives rise to a bicistronic mRNA and two independent protein products.
[00244] Any heterologous open reading frame can be linked to IRES elements. This may include genes for secreted proteins, multi-subunit proteins, encoded by independent genes, intracellular or membrane-bound proteins and selectable markers. In this way, expression of several proteins can be simultaneously engineered into a cell with a single construct and a single selectable marker.
[002451 A polyA sequence may comprise a length of 1 - 10 bp, 10- 20 bp, 20 - 50 bp, 50 100 bp, 100 - 500 bp, 500 bp - 1Kb, 1Kb - 2 Kb, 2Kb - 3 Kb, 3Kb - 4 Kb, 4Kb - 5 Kb, Kb - 6 Kb, 6Kb -7 Kb, 7Kb - 8 Kb, 8Kb - 9 Kb, and 9Kb - 10 Kb in length. A polyA sequence may comprise a length of at least 1bp, 2 bp, 3 bp, 4 bp, 5 bp, 6 bp, 7 bp, 8 bp, 9 bp,10bp,20bp,30bp,40bp,50bp,60bp,70bp,80bp,90bp,100bp,200bp,300bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length. A polyA sequence may comprise a length of at most 1 bp, 2 bp, 3 bp, 4 bp, 5 bp, 6 bp, 7 bp, 8 bp, 9 bp, 10 bp, 20 bp, 30 bp, 40 bp, 50 bp, bp,70bp,80bp,90bp,100bp,200bp,300bp,400bp,500bp,600bp,700bp,800 bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length.
[00246] In some cases, a polyA or termination sequence may include but is not limited to sequences such as SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, and SEQ ID No. 55.
[00247] Generally, polyA sequences, as provided by the present disclosure, may include but are not limited to any sequences selected from PolyA Regions 1-10 as provided in Fig. 9A and Fig. 9B.
[00248] In some cases, polyA sequences may be optimized for various parameters affecting protein expression, including but not limited to mRNA half-life of the transgene in the cell, stability of the mRNA of the transgene or transcriptional regulation. For example, polyA sequences maybe altered to increase mRNA transcript of the transgene, which may result in increased protein expression. In some cases, the polyA sequences maybe altered to decrease the half-life of the mRNA transcript of the transgene, which may result in decreased protein expression.
[00249] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise a polynucleotide encoding a human sFLT-1 protein or a functional fragment thereof. In some cases, the recombinant virus and/or plasmid used to generate recombinant virus, comprises a nucleic acid encoding another anti-VEGF protein or VEGF inhibitor.
[00250] In some cases, a VEGF inhibitor may include but is not limited to sequences such as SEQ ID No. 102, SEQ ID No. 103, SEQ ID No. 104, SEQ ID No. 105, SEQ ID No. 106, SEQ ID No. 107, SEQ ID No. 108, or SEQ ID No. 122
[00251] In some cases, nucleic acids of a VEGF inhibitor may encode for polypeptide sequences which may include but are not limited to polypeptide sequences such as SEQ ID No. 109 or SEQ ID No. 121.
[00252] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, comprise a regulatory nucleic acid fragment that is capable of directing selective expression of the sFLT-1protein in an eye cell. In some cases, eye cells may comprise retinal pigment epithelial cells (RPE).
[00253] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, may comprise one or more untranslated regions (UTR) or sequences. Generally, any suitable UTR sequence may be used for the desired optimal expression of the transgene (i.e. sFLT-1). For example, in some cases, UTR regions or sequences may comprise native sequences. In some cases, UTR sequences may be sequences as found upstream (5' UTR) or downstream (3'UTR) of the human sFLT-1 gene as found in human genomic sequence or portions thereof. In other cases, UTR sequences may comprise non-native sequences, such as found upstream or downstream of genes other than sFLT-1 or comprise sequences further comprising a combination of one or more UTR sequence elements as further described herein. In some cases, only a 5' UTR sequence is used. In some cases, only a 3' UTR sequence is used. In some cases, no UTR sequences are used.
[00254] A UTR sequence may comprise a length of 1 - 10 bp, 10- 20 bp, 20 - 50 bp, 50 100 bp, 100 - 500 bp, 500 bp - 1Kb, 1Kb - 2 Kb, 2Kb - 3 Kb, 3Kb - 4 Kb, 4Kb - 5 Kb, Kb - 6 Kb, 6Kb -7 Kb, 7Kb - 8 Kb, 8Kb - 9 Kb, and 9Kb - 10 Kb in length. A UTR sequence may comprise a length of at least 1bp, 2 bp, 3 bp, 4 bp, 5 bp, 6 bp, 7 bp, 8 bp, 9 bp,10bp,20bp,30bp,40bp,50bp,60bp,70bp,80bp,90bp,100bp,200bp,300bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length. A UTR sequence may comprise a length of at most 1bp,2bp,3 bp,4bp,5 bp,6bp,7bp,8bp,9bp,10bp,20bp,30bp,40bp,50bp,60 bp,70bp,80bp,90bp,100bp,200bp,300bp,400bp,500bp,600bp,700bp,800bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length.
[00255] Generally, UTR sequences as provided by the present disclosure may include but are not limited to any sequences including but to limited to SEQ ID No. 91, SEQ ID No. 2, SEQ ID No. 92, SEQ ID No. 93, SEQ ID No. 94, SEQ ID No. 95, SEQ ID No. 96, SEQ ID No. 97, SEQ ID No. 98, SEQ ID No. 99, SEQ ID No.100, and SEQ ID No. 101.
[00256] In some cases, variations of either the 5'UTR and/or 3'UTR may be optimized for a desired level of protein expression. In some cases, 3'UTR sequences may be optimized for various parameters affecting protein expression, including but not limited to mRNA half-life of the transgene in the cell, stability or secondary structure of the mRNA of the transgene or conditional regulation (e.g. binding of various factors to modulate translation). For example, the 3'UTR sequence maybe altered to increase the half-life of the mRNA transcript of the transgene, which may result in increased protein expression. In some cases, the 3'UTR sequence maybe altered to decrease the half-life of the mRNA transcript of the transgene, which may result in decreased protein expression.
[00257] Generally, 3' UTRs sequences may comprise various sequence elements. The present disclosure provides for 3' UTR sequences that may include but are not limited to sequence elements such as one or more polyadenylation signals, linker sequences, spacer sequences, SECIS elements, AU-rich or ARE sequences or miRNA or RNAi binding sequences, transcription terminator sequences, 3' termination sequences or variants and/or combinations thereof.
[00258] In some cases, 5'UTR sequences may be optimized for various parameters affecting protein expression, including but not limited to mRNA half-life of the transgene in the cell, stability or secondary structure of the mRNA of the transgene or transcriptional regulation. For example, the 5'UTR sequences maybe altered to increase translation efficiency of mRNA transcript of the transgene, which may result in increased protein expression. In some cases, the 5'UTR sequences maybe altered to decrease translation efficiency of mRNA transcript of the transgene, which may result in decreased protein expression.
[00259] Generally, 5' UTRs sequences may comprise various sequence elements. The present disclosure provides for 5' UTR sequences that may include but are not limited to sequence elements such as one or more ribosome binding sites (RBS), linker sequences, spacer sequences, regulatory sequences, regulatory response elements, riboswitches, sequences that promote or inhibit translation initiation, regulatory sequences for mRNA transport or variants and/or combinations thereof.
[00260] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus, may comprise one or more linker or spacer sequences. As described herein, linker sequence or spacer sequence may be used interchangeably. Generally, a linker sequence or spacer sequence may be any suitable sequence used to create a non contiguous sequence between at least two sequence elements. For example, in one aspect of the disclosure, a linker sequence may be found inserted between an ITR-1, 108 sequence, or ITR-2, 103, and an antibiotic resistance gene sequence, 106 as reflected in Fig. 1A. In another example, linker sequences may be inserted adjacent to any sequence element of the recombinant virus or the plasmid encoding the recombinant virus including the ITR sequences, the promoter or promoter/enhancer sequences, the intron sequence, the transgene sequence and the poly A region sequence. Generally, any suitable linker or spacer sequence may be used to create non-contiguous sequences. For example, in some cases, linker sequences may be randomly generated sequence. In some cases, linker sequence may be non-specific sequence optimized to prevent formation of secondary structure or intramolecular interactions that may adversely affect protein expression. In some cases, linker sequences may comprise any additional functional sequence elements, including but not limited to introns, regulatory sequences, enhancers or the like. Functional elements in linker sequences may be used for the desired optimal production of virus and/or expression of transgene expression. In some cases, linker sequences are cloning sites, remnants of prior cloning sites or other non-significant sequences and the insertion of such linkers between any two sequence elements is optional.
[00261] Generally, linker sequence, as provided by the present disclosure, may include but are not limited to any sequences selected from sequences as provided in Fig. 9D, Fig. 9E and Fig. 9F.
[00262] In some cases, the length of the linker sequence may be optimized for the desired optimal production of virus and/or expression of transgene expression. In some cases, the length of one or more linker sequences located at one or more sites in the virus genome or plasmid may be varied to produce the desired optimal protein expression. For example, a linker sequence may be found between the intron, as described herein and the transgene (i.e. sFLT-1). The length of the linker sequence may be varied to produce varying effects on the transcription and subsequent translation of the transgene in the cell.
[00263] A linker sequence may comprise a length of 1 - 10 bp, 10- 20 bp, 20 - 50 bp, 50 100 bp, 100 - 500 bp, 500 bp - 1Kb, 1Kb - 2 Kb, 2Kb - 3 Kb, 3Kb - 4 Kb, 4Kb - 5 Kb, Kb - 6 Kb, 6Kb -7 Kb, 7Kb - 8 Kb, 8Kb - 9 Kb, and 9Kb - 10 Kb in length. A linker sequence may comprise a length of at least 1bp, 2 bp, 3 bp, 4 bp, 5 bp, 6 bp, 7 bp, 8 bp, 9 bp,10bp,20bp,30bp,40bp,50bp,60bp,70bp,80bp,90bp,100bp,200bp,300bp, 400 bp, 500 bp, 600 bp, 700 bp, 800 bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length. A linker sequence may comprise a length of at most 1bp,2bp,3 bp,4bp,5 bp,6bp,7bp,8bp,9bp,10bp,20bp,30bp,40bp,50bp,60 bp,70bp,80bp,90bp,100bp,200bp,300bp,400bp,500bp,600bp,700bp,800bp, 900 bp, 1Kb, 2 Kb, 3 Kb, 4 Kb, 5 Kb, 6 Kb, 7 Kb, 8 Kb, 9 Kb, and 10 Kb in length.
[00264] In some cases, a linker or spacer sequence may include but is not limited to SEQ ID No. 60, SEQ ID No. 61, SEQ ID No. 62, SEQ ID No. 63, SEQ ID No. 64, SEQ ID No. , SEQ ID No. 66, SEQ ID No. 67, SEQ ID No. 68, SEQ ID No. 69, SEQ ID No.70, SEQ ID No. 71, SEQ ID No. 72, SEQ ID No. 73, SEQ ID No. 74, SEQ ID No. 75, SEQ ID No. 76, SEQ ID No. 77, SEQ ID No. 78, SEQ ID No. 79, SEQ ID No. 80, SEQ ID No. 81, SEQ ID No. 82, SEQ ID No. 83, SEQ ID No. 84, SEQ ID No. 85, SEQ ID No. 86, SEQ ID No. 87, SEQ ID No. 88, SEQ ID No. 89, and SEQ ID No. 90.
[00265] In some aspects, the recombinant virus comprises inverted terminal repeat (ITR) sequences used for packaging the recombinant gene expression cassette into the virion of the viral vector. In some cases, the ITR is from adeno-associated virus (AAV). In some cases, the ITR is from AAV serotype 2. In some cases, an ITR may include but is not limited to SEQ ID No. 56, SEQ ID No. 57, SEQ ID No. 58, or SEQ ID No. 59.
[00266] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus comprises nucleic acid elements in the following order: a) a first ITR sequence; b) a promoter sequence; c) an intron sequence; d) a first UTR sequence; e) a sequence encoding a VEGF inhibitor; f) a second UTR sequence; g) a poly A sequence; and h) a second ITR sequence. In some aspects of the recombinant virus and/or plasmid used to generate the recombinant virus, the promoter sequence comprises a promoter/enhancer sequence. In some aspects, the sequence encoding a VEGF inhibitor comprises a sequence encoding human sFLT-1 protein or a functional fragment thereof. In other aspects, the plasmid used to generate the recombinant virus further comprises an origin of replication sequence, 102. In some aspects, the plasmid further comprises a sequence for an antibiotic resistance gene as provided herein.
[00267] In some aspects, the recombinant virus and/or plasmid used to generate recombinant virus comprises nucleic acid elements in the following order: a) a first ITR sequence; b) a first linker sequence; c) a promoter sequence; d) a second linker sequence; e) an intron sequence; f) a third linker sequence; g) a first UTR sequence; h) a sequence encoding a VEGF inhibitor; i) a second UTR sequence; j) a fourth linker sequence; k) a poly A sequence; 1) a fifth linker sequence; and m) a second ITR sequence. In some aspects of the recombinant virus and/or plasmid used to generate recombinant virus, the promoter sequence comprises a promoter/enhancer sequence. In some aspects, the sequence encoding a VEGF inhibitor comprises a sequence encoding human sFLT-1 protein or a functional fragment thereof. In other aspects, the plasmid used to generate the recombinant virus further comprises an origin of replication sequence. In some aspects, the plasmid further comprises a sequence for an antibiotic resistance gene as provided herein. IV. Pharmaceutical Compositions
[00268] A pharmaceutical composition is a formulation containing one or more active ingredients as well as one or more excipients, carriers, stabilizers or bulking agents, which is suitable for administration to a human patient to achieve a desired diagnostic result or therapeutic or prophylactic effect. For storage stability and convenience of handling, a pharmaceutical composition can be formulated as a lyophilized (i.e. freeze dried) or vacuum dried powder which can be reconstituted with saline or water prior to administration to a patient. Alternately, the pharmaceutical composition can be formulated as an aqueous solution. A pharmaceutical composition can contain a proteinaceous active ingredient. Unfortunately, proteins can be very difficult to stabilize, resulting in loss of protein and/or loss of protein activity during the formulation, reconstitution (if required) and during the storage prior to use of a protein containing pharmaceutical composition. Stability problems can occur because of protein denaturation, degradation, dimerization, and/or polymerization. Various excipients, such as albumin and gelatin have been used with differing degrees of success to try and stabilize a protein active ingredient present in a pharmaceutical composition. Additionally, cryoprotectants such as alcohols have been used to reduce protein denaturation under the freezing conditions of lyophilization.
[00269] Pharmaceutical compositions suitable for internal use include sterile aqueous solutions or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion. For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants such as polysorbates (TweenTM), sodium dodecyl sulfate (sodium lauryl sulfate), lauryl dimethyl amine oxide, cetyltrimethylammonium bromide (CTAB), polyethoxylated alcohols, polyoxyethylene sorbitan, octoxynol (Triton X100TM), N, N - dimethyldodecylamine-N oxide, hexadecyltrimethylammonium bromide (HTAB), polyoxyl 10 lauryl ether, Brij 721TM, bile salts (sodium deoxycholate, sodium cholate), pluronic acids (F-68, F-127), polyoxyl castor oil (CremophorTM), nonylphenol ethoxylate (TergitolTM), cyclodextrins and ,ethylbenzethonium chloride (HyamineTM). Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as manitol, sorbitol, sodium chloride in the composition. Prolonged absorption of the internal compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.
[00270] Sterile solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle that contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, methods of preparation are vacuum drying and freeze-drying that yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof
[00271] In one aspect, active compounds are prepared with carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems. Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art. The materials can also be obtained commercially. Liposomal suspensions (including liposomes targeted to infected cells with monoclonal antibodies to viral antigens) can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Pat. No. 4,522,811, incorporated by reference herein.
[00272] It is especially advantageous to formulate oral or parenteral compositions in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the human subject to be treated; each unit containing a predetermined quantity of active compound calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The specification for the dosage unit forms of the disclosure are dictated by and directly dependent on the unique characteristics of the active compound and the particular therapeutic effect to be achieved, and the limitations inherent in the art of compounding such an active compound for the treatment of individuals.
[00273] The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.
[00274] The pharmaceutical compositions of the disclosure encompass any pharmaceutically acceptable salts, esters, or salts of such esters, or any other compound which, upon administration to an animal comprising a human, is capable of providing (directly or indirectly) the biologically active metabolite or residue thereof. Accordingly, for example, the disclosure is also drawn to prodrugs and pharmaceutically acceptable salts of the compounds of the disclosure, pharmaceutically acceptable salts of such prodrugs, and other bio-equivalents.
[00275] The term "prodrug" indicates a therapeutic agent that is prepared in an inactive form that is converted to an active form (i.e., drug) within the body or cells thereof by the action of endogenous enzymes or other chemicals and/or conditions.
[00276] The term "pharmaceutically acceptable salt" refers to physiologically and pharmaceutically acceptable salts of the compounds of the disclosure: i.e., salts that retain the desired biological activity of the parent compound and do not impart undesired toxicological effects thereto.
[00277] Pharmaceutically acceptable base addition salts are formed with metals or amines, such as alkali and alkaline earth metals or organic amines. Metals used as cations comprise sodium, potassium, magnesium, calcium, and the like. Amines comprise N-N' dibenzylethylenediamine, chloroprocaine, choline, diethanolamine, dicyclohexylamine, ethylenediamine, N-methylglucamine, and procaine (see, for example, Berge et al., "Pharmaceutical Salts," J. PharmaSci., 1977, 66, 119). The base addition salts of said acidic compounds are prepared by contacting the free acid form with a sufficient amount of the desired base to produce the salt in the conventional manner. The free acid form may be regenerated by contacting the salt form with an acid and isolating the free acid in the conventional manner. The free acid forms differ from their respective salt forms somewhat in certain physical properties such as solubility in polar solvents, but otherwise the salts are equivalent to their respective free acid for purposes of the present disclosure.
[00278] As used herein, a "pharmaceutical addition salt" comprises a pharmaceutically acceptable salt of an acid form of one of the components of the compositions of the disclosure. These comprise organic or inorganic acid salts of the amines. Preferred acid salts are the hydrochlorides, acetates, salicylates, nitrates and phosphates. Other suitable pharmaceutically acceptable salts are well known to those skilled in the art and comprise basic salts of a variety of inorganic and organic acids, such as, for example, with inorganic acids, such as for example hydrochloric acid, hydrobromic acid, sulfuric acid or phosphoric acid; with organic carboxylic, sulfonic, sulfo or phospho acids or N substituted sulfamic acids, for example acetic acid, propionic acid, glycolic acid, succinic acid, maleic acid, hydroxymaleic acid, methylmaleic acid, fumaric acid, malic acid, tartaric acid, lactic acid, oxalic acid, gluconic acid, glucaric acid, glucuronic acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, salicylic acid, 4-aminosalicylic acid, 2 phenoxybenzoic acid, 2-acetoxybenzoic acid, embonic acid, nicotinic acid or isonicotinic acid; and with amino acids, such as the 20 alpha-amino acids involved in the synthesis of proteins in Nature, for example glutamic acid or aspartic acid, and also with phenylacetic acid, methanesulfonic acid, ethanesulfonic acid, 2-hydroxyethanesulfonic acid, ethane 1,2-disulfonic acid, benzenesulfonic acid, 4-methylbenzenesulfoic acid, naphthalene-2 sulfonic acid, naphthalene-1,5-disulfonic acid, 2-or 3-phosphoglycerate, glucose-6 phosphate, N-cyclohexylsulfamic acid (with the formation of cyclamates), or with other acid organic compounds, such as ascorbic acid. Pharmaceutically acceptable salts of compounds may also be prepared with a pharmaceutically acceptable cation. Suitable pharmaceutically acceptable cations are well known to those skilled in the art and comprise alkaline, alkaline earth, ammonium and quaternary ammonium cations. Carbonates or hydrogen carbonates are also possible. For oligonucleotides, preferred examples of pharmaceutically acceptable salts comprise but are not limited to: (I) salts formed with cations such as sodium, potassium, ammonium, magnesium, calcium, polyamides such as spermine and spermidine, and the like; (II) acid addition salts formed with inorganic acids, for example hydrochloric acid, hydrobromic acid, sulfuric acid, phosphoric acid, nitric acid and the like; (III) salts formed with organic acids such as, for example, acetic acid, oxalic acid, tartaric acid, succinic acid, maleic acid, fumaric acid, gluconic acid, citric acid, malic acid, ascorbic acid, benzoic acid, tannic acid, palmitic acid, alginic acid, polyglutamic acid, napthalenesulfonic acid, methanesulfonic acid, p toluenesulfonic acid, naphthalenedisulfonic acid, polygalacturonic acid, and the like; and (IV) salts formed from elemental anions such as chlorine, bromine, and iodine.
[00279] Pharmaceutical compositions of the present disclosure comprise, but are not limited to, solutions, emulsions, and liposome-containing formulations. These compositions may be generated from a variety of components that comprise, but are not limited to, preformed liquids, self-emulsifying solids and self-emulsifying semisolids.
[00280] Certain compositions of the present disclosure also incorporate carrier compounds in the formulation. As used herein, "carrier compound" or "carrier" can refer to a nucleic acid, or analog thereof, which is inert (i.e., does not possess biological activity per se) but is recognized as a nucleic acid by in vivo processes that reduce the bioavailability of a nucleic acid having biological activity by, for example, degrading the biologically active nucleic acid or promoting its removal from circulation. The co administration of a nucleic acid and a carrier compound, generally with an excess of the latter substance, can result in a substantial reduction of the amount of nucleic acid recovered in the liver, kidney or other extra circulatory reservoirs, presumably due to competition between the carrier compound and the nucleic acid for a common receptor. For example, the recovery of a partially phosphorothioate oligonucleotide in hepatic tissue can be reduced when it is co-administered with polyinosinic acid, dextran sulphate, polycytidic acid or 4-acetamido-4'isothiocyano-stilbene-2,2'disulfonic acid (Miyao et al., Antisense Res. Dev., 1995, 5, 115-121; Takakura et al., Antisense & Nucl. Acid Drug Dev., 1996, 6, 177-183).
[00281] The vector or recombinant viruses (virions) can be incorporated into pharmaceutical compositions for administration to mammalian patients, particularly humans. The vector or virions can be formulated in nontoxic, inert, pharmaceutically acceptable aqueous carriers, preferably at a pH ranging from 3 to 8, more preferably ranging from 6 to 8. Such sterile compositions will comprise the vector or virion containing the nucleic acid encoding the therapeutic molecule dissolved in an aqueous buffer having an acceptable pH upon reconstitution.
[00282] In some aspects, the pharmaceutical composition provided herein comprise a therapeutically effective amount of a vector or virion in admixture with a pharmaceutically acceptable carrier and/or excipient, for example saline, phosphate buffered saline, phosphate and amino acids, polymers, polyols, sugar, buffers, preservatives and other proteins. Exemplary amino acids, polymers and sugars and the like are octylphenoxy polyethoxy ethanol compounds, polyethylene glycol monostearate compounds, polyoxyethylene sorbitan fatty acid esters, sucrose, fructose, dextrose, maltose, glucose, mannitol, dextran, sorbitol, inositol, galactitol, xylitol, lactose, trehalose, bovine or human serum albumin, citrate, acetate, Ringer's and Hank's solutions, cysteine, arginine, carnitine, alanine, glycine, lysine, valine, leucine, polyvinylpyrrolidone, polyethylene and glycol. Preferably, this formulation is stable for at least six months at 40 C.
[00283] In some aspects, the pharmaceutical composition provided herein comprises a buffer, such as phosphate buffered saline (PBS) or sodium phosphate/sodium sulfate, tris buffer, glycine buffer, sterile water and other buffers known to the ordinarily skilled artisan such as those described by Good et al. (1966) Biochemistry 5:467. The pH of the buffer in which the pharmaceutical composition comprising the anti-VEGF contained in the adenoviral vector delivery system, may be in the range of 6.5 to 7.75, 7 to 7.5, or 7.2 to 7.4. The pH of the formulation may range from about 3.0 to about 12.0. The pH of the immunogenic composition may be at least about 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 pH units. The pH of the immunogenic composition may be at most about 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 pH units.
[00284] In some aspects, the pharmaceutical composition provided herein comprises substances which increase the viscosity of the suspension, such as sodium carboxymethyl cellulose, sorbitol, or dextran, in the amount about 1-10 percent, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 percent.
[00285] Certain aspects of the disclosure provide pharmaceutical compositions containing one or more recombinant virus and one or more other chemotherapeutic agents.
[00286] Examples of such chemotherapeutic agents comprise, but are not limited to, anticancer drugs such as daunorubicin, dactinomycin, doxorubicin, bleomycin, mitomycin, nitrogen mustard, chlorambucil, melphalan, cyclophosphamide, 6 mercaptopurine, 6-thioguanine, cytarabine (CA), 5-fluorouracil (5-FU), floxuridine (5 FUdR), methotrexate (MIX), colchicine, vincristine, vinblastine, etoposide, teniposide, cisplatin and diethylstilbestrol (DES). See, generally, The Merck Manual of Diagnosis and Therapy, 15th Ed., Berkow et al., eds., 1987, Rahway, N.J., pages 1206-1228).
[00287] Anti-inflammatory drugs, comprising but not limited to nonsteroidal anti inflammatory drugs and corticosteroids, and antiviral drugs, comprising but not limited to ribivirin, vidarabine, acyclovir and ganciclovir, may also be combined in compositions of the disclosure (The Merck Manual of Diagnosis and Therapy, 15th Ed., Berkow et al., eds., 1987, Rahway, N.J., pages 2499-2506 and 46-49, respectively). Other non-antisense chemotherapeutic agents are also within the scope of this disclosure. Two or more combined compounds may be used together or sequentially.
[00288] In another related aspect, compositions of the disclosure may contain one or more recombinant viruses, particularly sFLT-1 with different sequences. Two or more combined viruses may be used together or sequentially.
[00289] In another aspect, the present disclosure provides a unit dose of a pharmaceutical composition comprising about 1 x 106 about 1 x 1015 viral genomes, wherein the viruses
comprises a nucleic acid encoding sFLT-1.
[00290] In some cases, the unit dose of the pharmaceutical composition of the disclosure may be measured as pfu (plaque forming units). In some cases, the pfu of the unit dose of
the pharmaceutical composition of the disclosure may be about Ix108 to about 5x 10 pfu. In some cases, the pfu of the unit dose of the pharmaceutical composition of the disclosure is at least about IxI8, 2x10, 3x10, 4x10, 5x108, 6x108, 7x10, 8x10, 9x108, 1x10 9,2x10 9,3x10 9,4x10 9,5x10 9,6x10 9,7x10 9,8x10 9 , 9x10 9,1x 10 ,2x 10 ,3x 10
, 4x1010,and 5x1010 pfu. In some cases, the pfu of the unit dose of the pharmaceutical composition of the disclosure is at most about Ix108, 2x108, 3x108, 4x108, 5x10, 6x101, 7x108, 8x108, 9x10, IxI9, 2x109, 3x109, 4x109, 5x109, 6x109, 7x109, 8x109, 9x109,
1x10 10,2x010,3x10 10,4x101 0,and 5x 10 pfu.
[00291] In some cases, the viral vector of the disclosure may be measured as vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is IxI10° to 3x101 vector genomes. In some cases, the unit dose of the
pharmaceutical composition of the disclosure is Ix109 to 3x101 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is 1x101 0 to 1x10 1 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is Ix108 to 3x1014 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is at least about Ix10 1x10 2 , 1x10, 1x10 4 ,
I 5' 1x10G, I 1x10G, XI 6' I1x107, I 7' 1x10G, 8X1 1x10G, XI 9' I1x10G°, 10' I1x10", I 11' I1x10 12', I1x10 I 13', I1x104, I 14' I1x10 I 16 015', 1x10
1x10 1 7 , and IxIG vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is Ix108 to 3x1014 vector genomes. In some cases, the unit dose of the pharmaceutical composition of the disclosure is at most about1x10 1,1x10 2 XI 3' 1x104, 1x10G, I 5' 1x10G, I 4' I1x10G, XI 6' I1x107, I 7' 1x10G, 8X9 1x10G, XI 9' I1x10°, 10' I1x10", I 11' I1x10, 12' I1x10, I 13' I1x104 14'
IxI1 1x1016, 1x10 7 ,and 1x1018 vector genomes.
[00292] In some cases, the unit dose of the pharmaceutical composition of the disclosure may be measured using multiplicity of infection (MOI). In some cases, MOI may refer to the ratio, or multiple of vector or viral genomes to the cells to which the nucleic may be delivered. In some cases, the MOI may be 1x10 6 . In some cases, the MOI may be1x10 5 -xi107. In some cases, the MOI may be xi104 -ix108. In some cases, recombinant viruses of the disclosure are at least about Ix101, ixi02, IxG1, ixi04, IxI05, ixi06, IxI07, IxI0G, IxG1, IxI01°, IxI1, IxI1, IxI1, IxI014, IxI1, 1x10 , 1x10 17,and IxI18 MOI. In some cases, recombinant viruses of this disclosure are IxI8 to 3x1014 MOI. In some cases, recombinant viruses of the disclosure are at most about 1x10 1
, ixi02, ixi03, ixi04, IxI05, ixi0G, IxI07, IxI0G, IxG1, IxI0 °, IxI1, IxI1, IxI1 IxI014, IxI1, IxI016, IxI1, and 1x10 18 MOI.
[00293] In some aspects the nucleic acid may be delivered without the use of a virus (i.e. with a non-viral vector), and may be measured as the quantity of nucleic acid. Generally, any suitable amount of nucleic acid may be used with the compositions and methods of this disclosure. In some cases, the amount of nucleic acid may be at least about 1 pg, 10 pg,100pg,1pg,10pg,100pg,200pg,300pg,400pg,500pg,600pg,700pg,800pg, 900pg,1ng,10ng,100ng,200ng,300ng,400ng,500ng,600ng,700ng,800ng,900 ng,1gg,10gg,100gg,200gg,300gg,400gg,500gg,600gg,700gg,800gg,900 gg, 1 mg, 10 mg, 100 mg, 200 mg, 300 mg, 400 mg, 500 mg, 600 mg, 700 mg, 800 mg, 900 mg 1 g, 2 g, 3 g, 4 g, or 5g. In some cases, nucleic acid may be at most about 1 pg, pg,100pg,1pg,10pg,100pg,200pg,300pg,400pg,500pg,600pg,700pg,800 pg,900pg,1ng,10ng,100ng,200ng,300ng,400ng,500ng,600ng,700ng,800ng, 900 ng, 1 gg, 10 gg, 100 gg, 200 gg, 300 gg, 400 gg, 500 gg, 600 gg, 700 gg, 800 gg, 900 gg, 1 mg, 10 mg, 100 mg, 200 mg, 300 mg, 400 mg, 500 mg, 600 mg, 700 mg, 800 mg, 900 mg, 1 g, 2 g, 3 g, 4 g, or 5g.
[00294] In some aspects, the pharmaceutical composition comprises about 1 x 106 to about I x 105 recombinant viruses, about I x 107 to about Ix 1()14 recombinant viruses, about I x 108 to about 1 x 1013recombinant viruses, about 1 x 10 9 to about 3 x 102 recombinant viruses, or about I x I0 to about 3 x10 recombinant viruses. Kits
[00295] Compositions and reagents useful for the present disclosure may be packaged in kits to facilitate application of the present disclosure. In some aspects, the present method provides for a kit comprising a recombinant nucleic acid of the disclosure. In some aspects, the present method provides for a kit comprising a recombinant virus of the disclosure. The instructions could be in any desired form, including but not limited to, printed on a kit insert, printed on one or more containers, as well as electronically stored instructions provided on an electronic storage medium, such as a computer readable storage medium. Also optionally included is a software package on a computer readable storage medium that permits the user to integrate the information and calculate a control dose.
[00296] In another aspect, the present disclosure provides a kit comprising the pharmaceutical compositions provided herein. In yet another aspect, the disclosure provides kits in the treatment of diseases such as, for example: AMD, DME, RVO, angiogenesis related diseases, cancer, autoimmune diseases, infectious disease organisms, and the like.
[00297] In one aspect, a kit comprises: (a) a recombinant virus provided herein, and (b) instructions to administer to cells or an individual a therapeutically effective amount of the recombinant virus. In some aspects, the kit may comprise pharmaceutically acceptable salts or solutions for administering the recombinant virus. Optionally, the kit can further comprise instructions for suitable operational parameters in the form of a label or a separate insert. For example, the kit may have standard instructions informing a physician or laboratory technician to prepare a dose of recombinant virus.
[00298] Optionally, the kit may further comprise a standard or control information so that a patient sample can be compared with the control information standard to determine if the test amount of recombinant virus is a therapeutic amount consistent with for example, a shrinking of a tumor. Optionally, the kit could further comprise devices for administration, such as a syringe, filter needle, extension tubing, cannula, and subretinal injector.
[00299] Recombinant viruses may be generated by any suitable means. The methods and compositions and of the disclosure provide for generation of recombinant virus through various means, including the use of transgenic cells, which may include mammalian cells, insect cells, animal cells or fungal cells.
[00300] For example, in some aspects, recombinant viruses may be generated through transfection of insect cells via recombinant baculovirus. In some cases, recombinant baculovirus may be generated as an intermediate, whereby the baculovirus may contain sequences necessary for the generation of other viruses such as AAV or rAAV2 viruses. In some cases one or more baculoviruses may be used in the generation of recombinant viruses used for the composition and methods of treatment of this disclosure. In some cases insect cells such as Sf9, High-Five or Sf21 cell lines may be used. In some cases, cell lines may be generated using transient methods (i.e. infection with not stably integrated transgenes.) In other cases, cell lines may be generated through the generation of stable cell lines (i.e. infection with transgenes stably integrated into the host cell genome.)In other aspects, the pharmaceutical composition provided herein is manufactured using adherent human embryonic kidney 293 (HEK293) cells. In an alternative aspect, the pharmaceutical composition provided herein is manufactured using suspension-adapted HEK293 cells. In another aspect, the pharmaceutical composition provided herein is manufactured using the baculovirus expression system (BVES) in insect cells. In some aspects, the vector is produced using herpes-helper virus. In some aspects, the vector is produced using producer-clone methods. In some aspects, the vector is produced using Ad-AAV.
[00301] Generally, any suitable method may be used in the biochemical purification of recombinant viruses for use in a pharmaceutical composition as described herein. Recombinant viruses may be harvested directly from cells, or from the culture media surrounding host cells. Virus may be purified using various biochemical means, such as gel filtration, filtration, chromatography, affinity purification, gradient ultracentrifugation, or size exclusion methods. Recombinant virus may be tested for content (i.e., identity), purity, or potency (i.e., activity) using any suitable means, before formulation into a pharmaceutical composition. Method may include but are not limited to immunoassays, ELISA, SDS-PAGE, western blot, Northern blot, Southern blot or PCR, HUVEC assays and the like. V. Method of Treatment
[00302] In another aspect, the present disclosure provided a method for treating a pathological angiogenesis related disease, comprising administering a pharmaceutically effective amount of the pharmaceutical compositions provided herein to a human subject in need of such treatment. In some aspects, the disease is selected from the group of ocular neovascular diseases consisting of: age-related macular degeneration (AMD), wet AMD, dry-AMD, retinal neovascularization, choroidal neovascularization diabetic retinopathy, proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal vein occlusion, diabetic macular edema, diabetic retinal ischemia, ischenic retinopathy and diabetic retinal edema.
[00303] In some cases, dry AMD may be treated. In some cases, dry AMD may be referred to as central geographic atrophy, characterized by atrophy of the retinal pigment epithelial later below the retina and subsequent loss of photoreceptors in the central part of the eye. The composition and methods of this disclosure provide for the treatment of any and all forms of AMD.
[00304] In another aspect, the present disclosure provides a method for prophylactic treatment of AMD or ocular neovascular diseases as described herein, comprising administering a pharmaceutically effective amount of the pharmaceutical compositions provided herein to a human subject in need of such treatment. The present disclosure may be used to treat patients at risk of developing AMD, or presenting early symptoms of the disease. This may include treatment of eyes either simultaneously or sequentially. Simultaneous treatment may mean that the treatment is administered to each eye at the same time or that both eyes are treated during the same visit to a treating physician or other healthcare provider. It has been documented that patients have a higher risk of developing AMD in a healthy fellow eye of an eye that presents symptoms of AMD, or in patients who have a genetic predisposition toward developing AMD. The present disclosure can be used as a prophylactic treatment in prevention of AMD in the fellow eye.
[00305] While the mechanism underlying the increased risk for the progression of ocular neovascular disease in a fellow eye is unknown, there are multiple studies in the art detailing this elevated risk. For example, in one such large scale study, of110 fellow eyes observed that progressed to advanced AMD, choroidal neovascularization (CNV) developed in 98 eyes and foveal geographic atrophy (GA) in 15 eyes.Opthmciologa 2011;226(3):110-8. doi: 10.1159/000329473. Curr Opin Ophthalmol. 1998 Jun;9(3):38 46. No non-ocular characteristic (age, gender, history of hypertension or smoking) or ocular feature of the study eye at baseline (lesion composition, lesion size, or visual acuity) was predictive of progression to advanced AMD in this cohort. However, statistical analysis indicates that AMD symptoms of the first eye, including drusen size, focal hyperpigmentation, and nonfoveal geographic atrophy had significant independent relationships in assessing risk of developing of AMD in the fellow eye. Recent studies have indicated that of ocular characteristics, genetic factors and certain environmental factors may play a role in the increased risk of developing AMD in the fellow eye. JAMA Ophthalmol. 2013 Apr 1;131(4):448-55. doi: 10.1001/jamaophthalmol.2013.2578. Given the well characterized elevated risk of AMD development in untreated fellow eyes, there is need in the art of methods for preventing onset and subsequent vision loss due to the disease.
[00306] The term "subject," or "individual" or "patient" as used herein in reference to individuals having a disease or disorder or are suspected of having a disease or disorder, and the like. Subject, individual or patent may be used interchangeably in the disclosure and encompass mammals and non-mammals. Examples of mammals include, but are not limited to, any member of the Mammalian class: humans, non-human primates such as chimpanzees, and other apes and monkey species; farm animals such as cattle, horses, sheep, goats, swine; domestic animals such as rabbits, dogs, and cats; laboratory animals including rodents, such as rats, mice and guinea pigs, and the like. Examples of non mammals include, but are not limited to, birds, fish and the like. In some aspects of the methods and compositions provided herein, the mammal is a human.
[00307] The term "subject" or "individual" also includes humans suffering from the disorder or disease, age 20 and older. Unexpectedly, the present disclosure can be used in a range of patient ages. This includes younger patients not generally associated with AMD disease, which presents more frequently in patients over the age of 65. Human subjects, or patients of the disclosure may include ages at least about 20, 25, 30, 35, 40, , 50, 55, 60, 65, 70, 75, 80, 85, 90, 95 or 100. Human subjects, or patients of the disclosure may include ages at most about 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75, , 85, 90, 95 or 100.
[00308] In some aspects, the term "subject," or "individual" includes patients with varying responses to penicillin, such as resistance or sensitivity to its effects or patients who show or lack symptoms of allergic response to the drug. A. Method of Delivery
[00309] In some aspects, the pharmaceutical composition is administered to subretinal sites using any direction method. In some cases, the delivery method may be by injection, such as those described in US Pat Pub. No. 2010008170, which is incorporated by reference in its entirety. In some cases, direct administration to subretinal sites includes injection of a liquid pharmaceutical composition via syringe. In another example, direct administration may involve injection via a cannula or other suitable instrument for delivery for a vector or recombinant virus. In other examples, direct administration may comprise an implant further comprising a suitable vector for delivery of transgenes such as sFLT-1. In some cases the implant may be either directly implanted in or near the retina.
[00310] The central retina, macula, and fovea regions of the retina are unique amongst mammals to primates. Furthermore, there are distinct differences in the anatomy and subsequent pathogenesis of AMD between primate and humans. The central retina is the area of the retina surrounding the posterior pole between the vascular arcades of a primate eye, which includes the fovea, macula, and surrounding area. The macula is near the center of the retina and has a diameter of approximately 1.5 mm. This area contains the highest concentration of both rod and cone photoreceptors. At the center of the macula is the fovea, a small pit that contains the largest concentration of cone photoreceptors. The macula and fovea regions of the retina also contain underlying RPE cells. These regions of the retina are responsible for perception of fine detail (acuity) and color. As this region is responsible for the most important part of human vision (fine vision), safe and effective targeting of the vector to the subretinal space of the macula and fovea is desired. In some cases, a pharmaceutical composition of the disclosure is administered in the central retina. In some cases, it is administered in the central retina outside the fovea.
[00311] Briefly, the general method for delivering a vector to the subretinal space of the macula and fovea may be illustrated by the following brief outline. This example is merely meant to illustrate certain features of the method, and is in no way meant to be limiting.
[00312] Generally, the vector can be delivered in the form of a suspension injected intraocularly (subretinally) under direct observation using an operating microscope. This procedure may involve vitrectomy followed by injection of vector suspension using a fine cannula through one or more small retinotomies into the subretinal space.
[00313] Briefly, an infusion cannula can be sutured in place to maintain a normal globe volume by infusion (of e.g. saline) throughout the operation. A vitrectomy is performed using a cannula of appropriate bore size (for example 20 to 27 gauge), wherein the volume of vitreous gel that is removed is replaced by infusion of saline or other isotonic solution from the infusion cannula. The vitrectomy is advantageously performed because (1) the removal of its cortex (the posterior hyaloid membrane) facilitates penetration of the retina by the cannula; (2) its removal and replacement with fluid (e.g. saline) creates space to accommodate the intraocular injection of vector, and (3) its controlled removal reduces the possibility of retinal tears and unplanned retinal detachment.
[00314] In some aspects, the vector is directly injected into the subretinal space within the central retina, by utilizing a cannula of the appropriate bore size (e.g. 27-45 gauge), thus creating a bleb in the subretinal space. In other aspects, the subretinal injection of vector suspension is preceded by subretinal injection of a small volume (e.g. about 0.1 to about 0.5 ml) of an appropriate fluid (such as saline or Ringer's solution) into the subretinal space within the central retina. This initial injection into the subretinal space establishes an initial fluid bleb within the subretinal space, causing localized retinal detachment at the location of the initial bleb. This initial fluid bleb can facilitate targeted delivery of vector suspension to the subretinal space (by defining the plane of injection prior to vector delivery), and minimize possible vector administration into the choroid and the possibility of vector injection or reflux into the vitreous cavity. In some aspects, this initial fluid bleb can be further injected with fluids comprising one or more vector suspensions and/or one or more additional therapeutic agents by administration of these fluids directly to the initial fluid bleb with either the same or additional fine bore cannulas.
[00315] Intraocular administration of the vector suspension and/or the initial small volume of fluid can be performed using a fine bore cannula (e.g. 27-45 gauge) attached to a syringe. In some aspects, the plunger of this syringe may be driven by a mechanized device, such as by depression of a foot pedal. The fine bore cannula is advanced through the sclerotomy, across the vitreous cavity and into the retina at a site pre-determined in each subject according to the area of retina to be targeted (within the central retina). In one aspect, administration is performed to a site outside the fovea. Under direct visualization the vector suspension is injected mechanically under the neurosensory retina causing a localized retinal detachment with a self-sealing non-expanding retinotomy. As noted above, the vector can be either directly injected into the subretinal space creating a bleb within the central retina or the vector can be injected into an initial bleb within the central retina, causing it to expand (and expanding the area of retinal detachment). In some aspects, the injection of vector suspension is followed by injection of another fluid into the bleb.
[00316] Without wishing to be bound by theory, the rate and location of the subretinal injection(s) can result in localized shear forces that can damage the macula, fovea and/or underlying RPE cells. The subretinal injections may be performed at a rate that minimizes or avoids shear forces. In some aspects, the vector is injected over about 15-17 minutes. In some aspects, the vector is injected over about 17-20 minutes. In some aspects, the vector is injected over about 20-22 minutes. In some aspects, the vector is injected over about 1 minute or over about 1-3 minutes or in less than one minute. In some aspects, the vector is injected at a rate of about 35 to about 65gl/min or 65 gl/min to about 150 gl/min. In some aspects, the vector is injected at a rate of about 35l/min. In some aspects, the vector is injected at a rate of about 40 gl/min. In some aspects, the vector is injected at a rate of about 45 gl/min. In some aspects, the vector is injected at a rate of about 50 gl/ml. In some aspects, the vector is injected at a rate of about 55 gl/min. In some aspects, the vector is injected at a rate of about 60 gl/ml. In some aspects, the vector is injected at a rate of about 65 gl/min. In some aspects, the vector is injected at a rate of about 100 gl/min. One of ordinary skill in the art would recognize that the rate and time of injection of the bleb may be directed by, for example, the volume of the vector or size of the bleb necessary to create sufficient retinal detachment to access the cells of central retina, the size of the cannula used to deliver the vector, and the ability to safely maintain the position of the cannula of the disclosure.
[00317] One or multiple (e.g. 2, 3, or more) blebs can be created. Generally, the total volume of bleb or blebs created by the methods and systems of the disclosure cannot exceed the fluid volume of the eye, for example about 4 ml in a typical human subject. The total volume of each individual bleb is preferably at about 0.1 - 0.2 ml. One of ordinary skill in the art will appreciate that in creating the bleb according to the methods and systems of the disclosure that the appropriate intraocular pressure must be maintained in order to avoid damage to the ocular structures. The size of each individual bleb may be, for example, about 50l to about 100gl, about 50l to about 200gl, about 0.1 to about 0.2 ml, about 0.1 to about 0.3 ml, or > 0.3 ml.
[00318] In order to safely and efficiently transduce areas of target retina (e.g. the central retina) outside the edge of the original location of the bleb, in some cases it may be desirable to manipulate the bleb to reposition the bleb to the target area for transduction. Manipulation of the bleb can occur by the dependency of the bleb that is created by the volume of the bleb, repositioning of the eye containing the bleb, repositioning of the head of the human with an eye or eyes containing one or more blebs, and/or by means of a fluid-air exchange. This is particularly relevant to the central retina since this area generally resists detachment by subretinal injection.
[00319] In some aspects fluid-air exchange is utilized following subretinal injection; fluid from the infusion cannula is temporarily replaced by air, e.g. from blowing air onto the surface of the retina. As the volume of the air displaces saline fluid from the vitreous cavity, the bleb is kept in place without efflux into the vitreous cavity. By positioning the eye globe appropriately, the bleb of subretinal vector in some cases can be manipulated to involve adjacent areas (e.g. the macula and/or fovea). In some cases, the mass of the bleb is sufficient to cause it to gravitate, even without use of the fluid-air exchange. Movement of the bleb may be further be facilitated by altering the position of the human subject's head, so as to allow the bleb to gravitate to the desired location in the eye. Once the desired configuration of the bleb is achieved, fluid is returned to the vitreous cavity. The fluid is an appropriate fluid, e.g., fresh saline. Generally, the subretinal vector may be left in situ without retinopexy to the retinotomy and without intraocular tamponade, and the retina will spontaneously reattach within about 48 hours.
[00320] Subretinal administration of AAV-2 for treatment of an ocular disease has been demonstrated in treatment of the rare genetic disease, Leber's Congenital Amaurosis ("LCA"). The pathology of LCA and the LCA patient population are different from those of wet-AMD and therefore it was not expected that treatment of wet AMD with gene therapy, and in particular, with AAV-2, would be safe and effective prior to the rAAV.sFLT clinical study. Specifically, LCA is a degenerative genetic disease caused by insufficient expression of the retinal protein RPE-65. It causes slow deterioration of vision in babies and young children that leads to total blindness by young adulthood, generally prior to age 25 to 30. By contrast, as described here previously, wet AMD is caused by growth of new blood vessels in the retina late in life, generally beginning between age 65 - 75. The presence of new vessels raises the concern that AAV particles, the transgene or the transgene product, would be transported outside the eye in greater amounts than was shown in the LCA study. Additionally, the immune system and immune response to foreign substances changes as patients age creating uncertainly prior to study results disclosed in Example 12 that treatment of wet AMD with a viral vector such as rAAV.sFLT-1 would be safe and effective. B. Effect of Treatment
[00321] In some aspects, a single injection of the pharmaceutical composition of the present disclosure into the affected eye not only has the benefits of the Lucentis* treatment, but may also require only one single injection.
[00322] The pharmaceutical composition of the present disclosure can stop leakage in existing blood vessels and can inhibit further new vessel formation in the subretinal space of patients suffering from CNV secondary to AMD for at least 18 months, and in some aspects the activity continues for 3-5 years. Inhibition of leakage and new vessel formation prevents the development of blindness in affected patients.
[00323] In some aspects, the sFLT-1 protein levels in the vitreous of said human subject is about 500 - 5,000 pg/ml, about 600 - 4,000 pg/ml, about 800 - 3,000 pg/ml about 900 - 2,000 pg/ml, or about 1,000 - 1,800 pg/ml, 500 - 700 pg/ml, 700 - 1,000 pg/ml, 1,000 1200 pg/ml, 1200 - 1,500 pg/ml, 1,800 - 2000 pg/ml. In some cases, protein levels in the vitreous of the human subject is at least about 100, 200, 300, 400, 500, 600, 700. 800, 900,1000,1100,1200,1300,1400,1500,1600,1700,1800,1900,2000,2100,2200, 2300 or 2400 pg/ml. In some cases, protein levels in the vitreous of the human subject is at most about 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1600, 1700, 1800, 1900, 2000, 2100, 2200, 2300 or 2400 pg/ml.
[00324] In some cases, protein "levels" may refer to any quantity or relative quantity of protein. In some cases, level may be measured as a concentration (e.g. pM, nM, uM etc.), a molality (e.g. m), as a mass (e.g. pg, ug, ng etc.) or any suitable measurement. In some cases, a unitless measurement may indicate a level.
[00325] In some cases, protein levels may be measured at least about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7 0.8, 0.9, 1.0, 2, 3, 4, 5, 6, 7, 14, 21 or 30, 50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350 or 365 days after administering said pharmaceutical composition. In some cases, protein levels may be measured at most about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7 0.8, 0.9, 1.0, 2, 3, 4, 5, 6, 7, 14, 21 or 30, 50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300, 325, 350 or 365 days after administering said pharmaceutical composition. In some cases, protein levels are measured at least 72 hours after administering said pharmaceutical composition.
[00326] Administration of the pharmaceutical composition of the present disclosure general leads to no side effects or adverse events.
[00327] In some aspects, no vector is detected in the human subject's tear, blood, saliva or urine samples 7, 14, 21 or 30 days after administering said pharmaceutical composition. In some aspects, the presence of the viral vector is detected by qPCR or ELISA as known in the art.
[00328] In some cases, no vector is detected in the human subject's tear, blood, saliva or urine samples at least about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7 0.8, 0.9, 1.0, 2, 3, 4, 5, 6, 7, 14, 21or30,50,75,100,125,150,175,200,225,250,275,300,325,350or365 days after administering said pharmaceutical composition. In some cases, no vector is detected in the human subject's tear, blood, saliva or urine samples at most about 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7 0.8, 0.9, 1.0, 2, 3, 4, 5, 6, 7, 14, 21 or 30, 50, 75, 100, 125, 150, 175, 200,
225, 250, 275, 300, 325, 350 or 365 days after administering said pharmaceutical composition. In some cases, no vector is detected in the human subject's tear, blood, saliva or urine samples are measured at least 72 hours after administering said pharmaceutical composition.
[00329] In some aspects, the human subject shows no clinically significant retinal toxicity as assessed by serial ophthalmic examinations over at least about a 2, 3, 4, 5, 6, 7, 8, 9, , 11 or 12 month months period. In some aspects, the human subject shows no clinically significant retinal toxicity as assessed by serial ophthalmic examinations over at most about a 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 or 12 month months period.
[00330] In some aspects, no superficial, anterior segment or vitreous inflammatory signs are present in the human subject over least a two months period. In some cases, no superficial, anterior segment or vitreous inflammatory signs are present in the human subject at 1 week or at 3, 6, 9 or 12 months after administration of the pharmaceutical composition.
[00331] In some aspects, no inflammatory signs are seen including a cytotoxic T cell response within about a 10% of normal range following administering step. In some aspects, there is no increase in T-cell response as measured by ELISpot. In some aspects, T cells do not express HLA-DR or Ki67, and do not develop an activated effector phenotype, as described in Lai et al. 2011 Gene Therapywhihis herein incorporatedby reference in its entirety. In some aspects, no inflammation of the vitreous is observed by biomicroscopy (BE) and indirect opthalmoscopy (JOE) following the administering step. In some aspects, trace inflammation of the vitreous that resolved within 10 days is observed by biomicroscopy (BE) and indirect opthalmoscopy (OE) following the administering step. In some aspects, the human subject does not require rescue treatment at least 120 days post administration. In some aspects, the human subject does not require rescue treatment for at least 30 days, at least 60 days, at least 90 days, at least 120 days at least 180 days, at least 270 days or at least 365 days after administration.
[00332] As used herein, rescue treatment refers to an administration of a dose of a VEGF inhibitor after the initial administration of the pharmaceutical composition described in the present disclosure. A rescue treatment is administered to boost the amount of VEGF inhibition in the eye patient in order to arrest or reverse signs and symptoms of disease progression. The decision to administer a rescue treatment may be based on predetermined diagnostic criteria, as in the clinical study described in Example 12, or on a physcian's clinical judgment that signs of active disease are present in a patient.
[00333] In some aspects, there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at least 120 days post administration. In some aspects, there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at least 30 days, at least 60 days, at least 90 days, at least 120 days at least 180 days, at least 270 days or at least 365 days after administration. In some aspects, there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at most 30 days, at least 60 days, at least 90 days, at least 120 days at least 180 days, at least 270 days or at least 365 days after administration.
[00334] In some aspects, a patient's best corrected visual acuity (BCVA) improves by 1, 2 3, 4, 5 or more lines.
[00335] In some aspects, a reduction in neovascularization as assessed by Fluorscein Angiography (FA) follows the administering step.
[00336] In some cases, retinal thickness may be measured to examine the effects of treatment. In some cases, the central retinal thickness of the human subject does not increase by more than 50 microns, 100 microns, or 250 microns within 12 months following treatment with the pharmaceutical composition of the disclosure. In some cases, the central retinal thickness of the human subject decreases by at least 50 microns, 100 microns, 200 microns, 250 microns, 300 microns, 400 microns, 500 microns, 600 microns within 3 months, 6 months or 9 months 12 months following treatment with the pharmaceutical composition of the disclosure. The decrease in the central retinal thickness of the human subject may be measured comparing the central retinal thickness at point in time to a baseline measurement taken at or within 1, 3, 7 or 10 days of the administration of the pharmaceutical composition of the disclosure. C. Combination Treatment with VEGF inhibitors
[00337] In some aspects, the method further comprises administering to the human subject a pharmaceutically effective amount of a VEGF inhibitor.
[00338] In some aspects, the VEGF inhibitor comprises an antibody against VEGF or a functional fragment thereof. In some aspects, the VEGF inhibitor comprises ranibizumab. In other aspects the VEGF inhibitor is a soluble receptor, fusion protein, or fragment thereof, such as aflibercept or sFLTO1. In some aspects, the pharmaceutical composition is administered at least 1, 2, 3, 4, 5, 6, 7, or 8 days after the administering of said VEGF inhibitor. In some aspects, the pharmaceutical composition is administered at most 1, 2, 3, 4, 5, 6, 7, or 8 days after the administering of said VEGF inhibitor. In some aspects, the pharmaceutical composition is administered within 90 days after the administering of said VEGF inhibitor.
[00339] In some aspects, the patient is treated under a protocol such as outlined in FIG. 13. After the protein expressed by the recombinant virus is expressed at a suitable level, (or "on"), the patients are followed with criteria-based re-treatment: a. If disease recurs, ranibizumab re-treatment is allowed b. Expect 5-8 re-treatments per year with control group c. In treatment group, expect equivalent vision with substantial decrease in number of re-treatments.
[00340] The patient is eligible for re-treatment if signs of active CNV are present: a. Based upon objective criteria as evaluated by masked personnel (technician and ophthalmologist) b. Re-treatment criteria are based upon substantial experience with "as needed" (PRN) treatment in previous trials with anti-VEGF agents.
[00341] Re-treatment is warranted based on signs of active disease; such as: a. >10 Early Treatment Diabetic Retinopathy Study (ETDRS) letter loss from human subject's previous visit (attributable to retinal causes), OR a decrease of >5 ETDRS letters from previous visit in conjunction with patient perception of functional loss; b. Any increased, new, or persistent subsensory, sub-Retinal Pigment Epithelial (RPE), or intraretinal fluid on OCT; c. Signs of increased CNV leakage via FA.
[00342] In some aspects, the VEGF inhibitor is administered for at least 1 time prior to administering the said pharmaceutical composition and an additional 1 or 2 times at about day intervals following said administration to prevent disease progression while protein expression increase to suitable levels. In some aspects, the VEGF inhibitor is administered for at least 2 times prior to administering said pharmaceutical composition. In some aspects, the VEGF inhibitor is administered over a period of 6 to 7 weeks following administration of said pharmaceutical composition.
[00343] In some aspects, the frequency of administration of VEGF inhibitor is reduced by less than a year or stopped altogether.
[00344] In some aspects, the present disclosure is used after 3 or more treatments of VEGF inhibitors. In some aspects, the present disclosure is used after observation that AMD patients show no improvement in BCVA after use of other VEGF inhibitors. D. Other Combination Treatments
[00345] In another preferred aspect, treatment of a patient comprises administration one or more of the pharmaceutical compositions provided herein, in conjunction with other therapies, for example, chemotherapy, radiation, surgery, anti-inflammatory agents, selected vitamins and the like. The other agents can be administered, prior to, after or co administered with the pharmaceutical compositions.
[00346] Aspects of the disclosure may be practiced without the theoretical aspects presented. Moreover, the theoretical aspects are presented with the understanding that Applicants do not seek to be bound by the theory presented.
[00347] While preferred aspects of the present disclosure have been shown and described herein, it will be obvious to those skilled in the art that such aspects are provided by way of example only. Numerous variations, changes, and substitutions will now occur to those skilled in the art without departing from the disclosure. It should be understood that various alternatives to the aspects of the disclosure described herein may be employed in practicing the disclosure. It is intended that the following claims define the scope of the disclosure and that methods and structures within the scope of these claims and their equivalents be covered thereby.
[00348] The effective dose of the nucleic acid will be a function of the particular expressed protein, the particular disease to be targeted, the patient and his or her clinical condition, weight, age, sex, etc. EXAMPLES
[00349] It will be understood by those of skill in the art that numerous and various modifications can be made to yield essentially similar results without departing from the spirit of the present disclosure. All of the references referred to herein are incorporated by reference in their entirety for the subject matter discussed. The following examples are included for illustrative purposes only and are not intended to limit the scope of the disclosure.
[00350] It must be explained, if not specified, that the percentage of following examples are all weight percent content wt %.
Example 1 rAAV.sFlt-1
[00351] One example recombinant virus is rAAV.sFlt-1. It encodes a vector and a human form of the truncated, soluble VEGF receptor 1 (sFLT-1). The vector is a recombinant, replicative-deficient adeno-associated viral (rAAV) vector, of serotype 2.
[00352] The rAAV.sFt-1 was manufactured under Good Manufacturing Practices (cGMP). At the manufacture site, the final product was aliquoted into sterile, low-virus binding microcentrifuge tubes (individually wrapped, low-retention, sterilised flat cap vials) according to the protocol requirements (i.e. 200 DA of I X 1010 or I X 1011viral genomes) and stored at -80 D C to await final product release. Each vial contained enough vector for use in a single patient (100 E to be administered).
[00353] The recombinant virus, rAAV.sFlt-1, is a recombinant adeno-associated virus 2 (rAAV2) vector carrying the soluble VEGFR receptor 1 (VEGFR1) or sFLT-1 driven by the human cytomegalovirus (CMV) promoter. The rAAV.sFlt-1 vector and intact AAV2 genome used as the backbone was prepared as described in Lai et. al. Gene Therapy 2002 vol. 9 (12) 804-813). The rAAV2 vector is devoid of viral coding sequences, i.e., rep and cap have been replaced with an expression cassette for the therapeutic gene. The active moiety of rAAV.sFt-1 is sFlt-1. sFLT-1 is the soluble truncated form of the vascular endothelial growth factor receptor 1 (VEGFR1 or Flt-1) which occurs naturally. sFLT-1 is the only known endogenous specific inhibitor of VEGF. sFLT-1 is generated by alternative splicing and it lacks the membrane-proximal immunoglobulin-like domain, the transmembrane spanning region and the intracellular tyrosine-kinase domain. Hence, it contains only the first six extracellular immunoglobulin-like loops followed by 31 unique amino acid residues. sFLT-1 was first identified in human umbilical vein endothelial cells (IUVEC), but it has since been found to occur naturally in the placenta and circulating systematically in pregnant women. The sFLT-1 used in generating rAAV.sFlt-1 contains an open reading frame encoding only the first six extracellular immunoglobulin-like domains of the full length membrane-spanning FLT-1, followed by a unique 31-amino acid long C-terminal extension, representing the alternatively splices, secreted soluble FLT-1 isoform described earlier.
[00354] While the ITR has been shown to possess mild promoter activity, for maximum levels of transgene expression, the cassette generally includes a promoter/enhancer combination, a small intron sequence, the cDNA of the therapeutic gene, and a polyadenylation signal. In rAAV.sFlt-1, the human CMV major immediate early gene enhancer / promoter and a chimeric intron were placed upstream of the sFLT-1 cDNA. A simian virus 40 polyadenylation (SV40 poly A) signal was placed downstream of the sFLT-1 cDNA.
[00355] Binding of sFLT-1 to VEGF in vitro has been widely demonstrated. The ability of sFLT-1 to inhibit VEGF-driven angiogenesis has attracted considerable attention for its potential clinical application, but no evidence of efficacy or suitability in humans was shown prior to the clinical study of rAAV.sFlt-1 described in Example 12. The angiostatic activity of sFLT-1 results from inhibition of VEGF by two mechanisms: i) sequestration of VEGF, to which it binds with high affinity, and ii) formation of inactive heterodimers with membrane-spanning isoforms of the VEGF receptors Flt-1 and KDR/Flk-1. Nucleotide sequence and diagram of plasmid vector used to generate rAAV.sFlt-1
[00356] rAAV.sFlt-1 was generated by triple transfection of human embryonic kidney 293 cells with DNA from the pSSV.CI.hsFlt-1 plasmid vector and helper plasmids, as is known in the art (Xiao et al., 1998. J Virololgy, 72(3): 2224-2232). rAAV.sFlt-1 was purified using a sequential process of nuclei isolation, density gradient centrifugation and heparin sulfate affinity column chromatography. A diagrammatic representation of the sFLT-1 plasmid vector is given in FIG. 1. Formulation
[00357] rAAV.sFlt-1 was formulated in sterile phosphate buffered saline (pH7) at 2 concentrations: 1X 1010 vector genome / 100 uL (low dose) and 1 X 1011 vector genome / 100 uL (high dose) in sterile low-virus-binding microcentrifuge tubes. The formulation is preservative-free and is for one-thaw, single use by subretinal injection only. rAAV(bv).sFlt-1
[00358] A second example recombinant virus is rAAV(bv).sFlt-1. rAAV(bv).sFlt-1 is a recombinant, replicative-deficient adeno-associated viral (rAAV) vector, of serotype 2 that is produced using a baculovirus expression system (BEVS) in Sf9 insect cells, and encodes a human form of the truncated, soluble VEGF receptor 1 (sFLT-1). The vector was produced using infection in S9 cells with two recombinant baculovirsues, Bac inRep-inCap and Bac-sFlt-1. Bac-sFlt-1 was derived from bacmid DNA that was generated from transformation of electrocompetent cells with an 8.7 kb plasmid, AVAI pFB-CMV-sFlt, which was cloned from the FragOO1m-BHKan and the plasmid backbone
V109-pFB-AAV-CMV-SV4pA-Kan using standard molecular biology techniques, as described in Maniatis et al., and as further described below. FragIm was formed from the following sequential nucleic acide elements which were chemically synthesized by Blue Heron Biotech, LLC (Bothell, WA) and cloned into a BHKan backbone: an ITR (AAV serotype 2), CMV-IE promoter, chimeric intron, 5' untranslated region (UTR), sFlt-1 coding sequence, SV40 polyA region, ITR (AAV serotype 2). The plasmid V109 pFB-AAV-CMV-SV40pA-Kan was obtained from Virovek, Inc. (Hayward, CA). The plasmid contained a kanamycin antibiotic resistance gene, a ColE1 origin and a recombinant AAV cassette, which contained a CMV-IE promoter, an intron, multiple cloning sequences and a SV40 polyA region, flanked by inverted terminal repeats (ITRs) from AAV serotype 2. This rAAV cassette was flanked by a gentamicin resistance gene and Tn7L attachment sites. AVAO1-pFB-CMV-sFlt did not contain a T7 RNA polymerase promoter or other prokaryotic regulatory sequence. Bac-inRep-inCap is a recombinant baculovirus containing expression cassettes for rep and cap genes from AAV serotype 2. rAAV(bv).sFlt-1 Production in Baculovirus
[00359] rAAV(bv).sFt-1 was produced in baculovirus according to the methods described in US Patent Application 12/297,958 and more specifically as follows: Sf9 cells were grown at 280 C to about 107 cells/ml in SF900 II SFM media containing 100 units/ml of penicillin and 100 Ig/ml streptomycin, and diluted to about 5x106 cells/ml prior to infection. Bac-inRep-inCap and Bac-sFlt-1, each at m.o.i. of one were used to infect the cells at 28°C for 3 days to produce AAV type 2 vectors. After 3 days of infection, cell pellets were collected by centrifugation at 2,000 rpm for 15 min in a tabletop centrifuge. The cell pellets were lysed in lysis buffer as described by Urabe et al., Hum Gene Ther. 1; 13(16):1935-43 (2002) and cellular nucleic acids (DNA and RNA) were digested by benzonase (Sigma, St. Louis, Mo.). The cell lysates were cleared by centrifugation at 8,000 rpm for 30 min in an Avanti J-25 centrifuge (Beckman, Fullerton, Calif.) and then loaded onto an SW28 centrifuge tube containing 5 ml of 1.55 g/cc, and 10 ml of 1.32 g/cc of CsC solutions. After centrifugation at 28,000 rpm for about 16 hours at 150 C., the rAAV-containing fraction was collected by puncturing the centrifuge tube using a syringe needle and subjected to a second round of CsCultracentrifugation. The rAAV-containing fraction was collected again by puncturing the centrifuge tube using a syringe needle and dialyzed in PBS buffer to remove the salts and detergents. Vector titers were determined by quantitative real-time PCR assay according to manufacturer's protocol (Applied Biosystems, Foster City, Calif.). Example 2 In vitro inhibition of VEGF-induced endothelial cell proliferation
[00361] Studies were performed to assess VEGF-induction of human umbilical vein endothelial cell (HUVEC) proliferation and to determine whether VEGF-induced HUVEC proliferation would be inhibited by rAAV-mediated sFLT-1. The presence of sFLT-1 in transduced cells was first confirmed by Western blot analysis of conditioned media (FIG 2, panel a). Conditioned medium from rAAV.sFt-1-transduced and rAAV.gfp-transduced 293 cells were added to VEGF-treated HUVECs in increasing dilutions. A control starvation medium (normal HUVEC growth medium without bovine endothelial growth factor) only was also included. Heparin was added to each well at 100 gg/mL. The relative VEGF-induced proliferation of HUVECS treated with VEGF and the different conditioned media was assayed by addition 25 gL of 3-(4,5-dimethythiazol-2 yl)-2,5-diphenyltetrozolium bromide (MTT, 5 mg / mL, Sigma) to each well for 4 hours at 37°C. The secreted sFLT-1 encoded by the rAAV vector in 40 gL of conditioned medium from rAAV.sFlt-1-transduced 293 cells was confirmed to inhibit VEGF-induced proliferation of HUVECS by 32%. Doubling the volume of conditioned medium resulted in complete inhibition with cell growth equivalent to basal levels similar to culture in starvation medium (FIG. 2, panel b). In vitro Assessment of rAAV.sFt-1 Vector Potency
[00362] Studies were performed to assess the potency of AAV vectors encoding the recombinant human sFlt-1 gene by quantifying human sFlt-1 protein expression of transduced human embryonic kidney 293 (HEK293) cells by ELISA. Human embryonic kidney 293 cells were obtained from the American Type Culture Collection (Rockville, MD, USA) and cultured in Dulbecco's Modified Eagle Medium (DMEM; Gibco, Grand Island, NY, USA) with 10% Fetal bovine serum (FBS, GIBCO) and 1X Penicillin Streptomycin-Glutamine. All cultures were maintained at 37C and 5% C02 in a humidified atmosphere.
[00363] The HEK293 cells were seeded at 8E4 or 1.5E5 cells/24 well and transduced at -90% confluency with the recombinant AAV vectors at a multiplicity of infection (MOI) ranging from xi103-ixi06 in DMEM medium supplemented with 2% FBS. After 72 hours, post-transduction, conditioned media were collected. Aliquots of the conditioned media were prepared for ELISA using reagents and according to standard instructions from the R&D Systems SVR1OOB Quantikine ELISA Human sVEGF RI/ sFlt-1 kit. (R&D Systems, Minneapolis, MN). Samples, standards and controls were prepared according to the ELISA kit instructions with the R&D Systems ELISA reagents and then transferred to an ELISA plate pre-coated with an antibody to sVEGF RI/ sFlt-1 and incubated for two hours at room temperature on a horizontal orbital microplate shaker. After incubation, anti-sVEGF RI Conjugate (two hours), substrate solution (30 minutes) and stop solution were sequentially applied to each well with aspiration and wash steps between each according to standard ELISA assay procedures. The optical density (OD) of the samples, standards and controls was measured within 30 minutes of stopping the substrate reaction with an ELISA plate reader. The concentration of sFlt-1 in pg/mL was calculated using SoftmaxPro software using the OD measurements from the ELISA plate reader..
[00364] Results of the studies for rAAV.sFlt-1 and rAAV(bv).sFlt-1 are presented in FIG. 25A and FIG. 25B. The concentration of sFlt-1 protein expressed by HEK293 cells 72 hours after transduction with rAAV.sFlt-1 and rAAV(bv).sFlt-1 ranged from 100 1,000 pg/mL at an MOIof1x10 4, 100-10,000 pg/mL at an MOI of1x10 5 and 1,000 ,000 pg/mL at an MOI of xi106. Example 3 rAAV.sFlt-1 Studies in Mice
[00365] Transgenic mice (trVEGF029) with slow, but stable retinal neovascularization induced by transgenic expression of human VEGF from photoreceptor cells were used as a model for retinal neovascularization. Two separate studies with these mice have been conducted.
[00366] In the first mouse study, 13 transgenic mice were assessed for ocular neovascular changes before and after administration of the rAAV.sFlt-1 vector (I X 1011 vector particles) in one eye and control vector in the contralateral eye. Eyes were assessed for neovascular changes using fluorescein angiography at one, three and eight months after injection. The extent, intensity and stage of neovascularization were graded (0 - 4) by three observers, masked to the treatment received in the eyes examined. There was a statistically significant overall reduction in the neovascular grading from a median grade of '3' (before injection) to a median grade of '1' at one month after injection (P = 0.012). This reduction was maintained at three months (median = 1; P = 0.001) and at eight months (median = 1; P = 0.001) after injection with rAAV.sFlt-1. Injection of rAAV.sFlt 1 vector resulted in the long-term (at least eight months) regression of neovascular vessels in 85% (11 of 13) of treated eyes compared to 8% (1 of 13) in the control vector-treated eyes.
[00367] Histological examination of the eyes in this preclinical study revealed that disturbance or loss of photoreceptors was significantly (P < 0.01) more pronounced in control vector-injected eyes compared to eyes injected with rAAV.sFlt-1. Expression of sFLT-1 was also confirmed by reverse transcriptase-polymerase chain reaction analysis of tissue samples; mRNA for sFLT-1 was detected in all four eyes tested. No rAAV.sFt-1 vector-specific adverse effects were noted in the eye injected with rAAV.sFlt-1 when compared to the eye injected with the control (rAAV.gfp) vector.
[00368] In the second study, conducted in trVEGF02 transgenic mice, the aim of the study was to determine whether subretinal injection of rAAV.sFlt-1 resulted in any cell mediated immune responses that could negatively impact on long-term expression of sFLT-1 or cause immune response-associated damage to the retina. In this study, 50 trVEGF02 transgenic mice were given subretinal injections of rAAV.sFlt-1 (8 X 109 viral particles) or phosphate-buffered saline (PBS) in one eye. The retinas of 30 mice from either the rAAV.sFlt-1 or control treatment groups were then assessed at one week and one month post-injection for the presence of immune cells(leucocytes, macrophages and B- and T-lymphocytes). Flow cytometric examination of the posterior eye cup showed that at one week post-injection there was a statistically significant increase in CD45+ leucocytes (6.6-fold increase compared to control; P < 0.05) and CD11b+ macrophages (5.7-fold increase compared to control; P < 0.036). However, there were no differences in CD19+, CD8+ and CD4+ (B- and T-lymphocytes) at this time point. At one month post injection, there were no differences in cell numbers between leucocyte subsets (i.e. CD45+, CD19+, CD1lb+, CD8+ or CD4+ cells) in the mouse eyes treated with rAAV.sFt-1 or the PBS control, suggesting that the infiltration of leucocytes and macrophages was transient. Flow cytometric evaluation of lymphocyte subsets of the spleens from these mice at the one-week and one-month time points showed no significant differences in the numbers of lymphocytes. This finding suggests that there was no systemic immune response observed, albeit a transient, localized immune response had been shown in the retina.
[00369] In this second study, histological examination of the eyes from five of the mice injected with either rAAV.sFlt-1 or PBS revealed no observable immune-response associated destruction or sequelae in the retinas of any of the mice examined.
[00370] To assess the impact of rAAV.sFlt-1 on the level of neovascularization in this transgenic mouse model (trVEGF02) of retinal neovascularization, the retinas of the mice injected with either rAAV.sFlt-1 or PBS were also graded independently by two different assessors at two months after treatment. Overall, there was a significant reduction in mean neovascularization grades (before injection: 1.46 0.58; after injection: 0.81 0.57; P < 0.00015) in the rAAV.sFlt-1-injected eyes whereas there was a significant increase in mean neovascularization grades (before injection: 1.08 0.56; after injection: 1.63 0.96; P < 0.018) in the PBS control-injected eyes.
[00371] The findings from this second mouse study clearly indicate that treatment with rAAV.sFlt-1 appeared to reverse the progressive increase in neovascularization observed in this mouse model of retinal neovascularization and AMD. Furthermore, only a limited, localized, inflammatory response was observed one week after subretinal injection with rAAV.sFlt-1 and resolved at one month. This immune response did not appear to compromise the long-term therapeutic efficacy of rAAV.sFlt-1 in the retina.
[00372] The transgenic mice models described in this Example 3 demonstrate that the pharmaceutical compositions disclosed herein can be used for the treatment and/or prophylaxis of other retinal vascular diseases in which VEGF inhibition is implicated. These include diabetic macular edema, diabetic retina ischemia, diabetic retinal edema, proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion and branched retinal vein occlusion. In clinical studies some VEGF inhibitors, such as Lucentis, have been shown to effectively treat certain of these diseases including diabetic macular edema and retinal vein occlusion. The efficacy of rAAV.sFt-1 demonstrated in these mouse models indicates rAAV.sFlt-1 is also effective in treating these VEGF mediated diseases. Example 4 rAAV.sFlt-1 Study in Rats
[00373] In the rat rAAV.sFlt-1 study, two models of ocular neovascularization were used: cautery-induced comeal neovascularization and laser photocoagulation-induced choroidal neovascularization (CNV). In the comeal neovascularization model, 22 rats were injected with rAAV.sFlt-1 vector (8 X 108 viral particles) in the anterior chamber of one eye and with control vector (rAAV.gfp) in the contralateral eye, followed by cauterization of the cornea. The eyes were then examined for neovascularization four days after cautery, using slit-lamp photography. A significantly lower rate of corneal vascularization was found in the rAAV.sFlt-1-treated eyes compared to the control treated eyes (27% and 63%, respectively; P = 0.009). Histological examination of the eyes showed that no corneal blood vessels were observed in the majority of cauterized, rAAV.sFlt-1-teated eyes. Histological examination also revealed that cellular infiltration of the corneal stromal layer was more pronounced in the control vector-injected eyes compared to the rAAV.sFlt-1-treated eyes. In addition, there was obvious edema and corneal stroma swelling in the control vector-treated eyes whereas there was no evidence of significant tissue swelling in rAAV.sFt-1-treated eyes.
[00374] In the laser photocoagulation-induced CNV model, 10 rats were injected subretinally with rAAV.sFlt-1 vector (8 X 108 viral particles) in one eye, and a control vector (rAAV.gfp) in the contralateral eye. Laser photocoagulation was used to induce CNV one month after injection. Five weeks after laser photocoagulation, eyes were examined for CNV using fluorescein angiography. Only 41% of the laser-treated areas showed leakage in the rAAV.sFlt-1 treated eyes compared to 60% in the control vector treated eyes (P = 0.002). Sixteen weeks after laser-induced CNV, the rAAV.sFt-1 treated eyes still showed significantly lower neovascularization than control eyes. Histological examination of the eyes in the areas immediately adjacent to the injection sites revealed a normal retinal pigmented epithelium and normal outer segments and outer nuclear layer. These findings suggested there was no obvious toxicity associated with sFLT-1 expression. Electroretinograms also indicated normal functioning of rAAV.sFt 1-treated eyes. Most of the rAAV.sFlt-1 and control vector-treated laser lesions developed subretinal cellular membranes. However, the lesions in eyes treated with rAAV.sFlt-1 generally had less proliferating endothelial cells, reflecting the fluorescein angiography findings, and indicating that the rate of angiogenesis (i.e. neovascularization) was reduced in rAAV.sFlt-1-treated eyes. rAAV.sFlt-1 and rAAV(bv).sFlt-1 Study in Rat Model of Diabetes
[00375] To further assess the safety and efficacy of rAAV.sFt-1 and rAAV(bv).sFlt-1 for the treatment of diabetic retinopathy (DR) and diabetic macular edema (DME), an experiment in a rat model of diabetes is conducted.
[00376] Vision loss in diabetic patients is mediated by inflammation, leading to the eventual breakdown of the blood-retinal-barrier and subsequent vascular leakage, resulting in macular edema. The streptozotocin (STZ)-diabetic rat model displays a well characterized pattern of vascular leakage, in which VEGF is strongly upregulated as early as 2 weeks. (Miyamoto, K., et al. Proc Natl Acad Sci USA 96, 10836-10841 (1999). Current approaches to treating animal models of DR demonstrate only a partial resolution of vascular leakage.
[00377] Diabetes is induced in Brown Norway rats by intraperitoneal injection of streptozotocin (50 mg/kg). Diabetes is confirmed and monitored by blood glucose measurements. Rats with blood glucose > 350 mg/dl are considered diabetic. Eight days following onset of diabetes, rats are treated by subretinal injection (n = 12 eyes per group) with 5 pL containing either 1x10 1 or 5x0 1 0 vg of rAAV.sFlt-1 or rAAV(bv).sFlt-1 using established techniques as described in Chalberg, T.W. et al., Invest Ophthalmol Vis Sci 46, 2140-2146 (2005). AAV2.GFP (5x10 10 vg) and vehicle are be injected as controls. Non-diabetic and diabetic no-treatment groups are also used as controls.
[00378] The effect of the rAAV(bv).sFlt-1 expressing sFLT-1 on vascular leakage is measure at 60 days. Retinal vascular leakage is measured by the FITC-albumin leakage method following the injection using the FITC-conjugated albumin as tracer. The FITC albumin leakage method directly measures the leakage of FITC-albumin leaking into the retina from the circulation and is a commonly used method to measure retinal vascular permeability. Retinal vascular leakage in injected eyes will be compared to non-diabetic controls, untreated and vehicle-treated diabetic eyes, and wildtype AAV serotypes 2 and 8.
[00379] Results: rAAV(bv).sFt-1 expressing sFLT-1 reduces vascular leakage in the STZ-diabetic rat whereas injection of AAV2.GFP and other controls does not. Example 5 rAAV.sFlt-1 Study in Monkeys
[00380] The efficacy and safety of rAAV.sFlt-1 was also examined in a nonhuman primate (macaque) model of AMD using laser photocoagulation to induce CNV. One challenge in developing treatments for AMD in humans is that nonhuman primates do not develop AMD. Laser photocoagulation induced CNV simulates some symptoms of AMD, but the underlying biological process is healing of an acute injury rather than progression of a chronic disease and thus may not be predictive of the performance of any particular treatment for CNV in humans with AMD or other CNV based diseases. Nonetheless, because human eyes are anatomically more similar to nonhuman primate eyes than nonprimate eyes, nonhuman primates are frequently studied to assess toxicity and histological response to a potential treatment or other intervention.
[00381] In the first study on nonhuman primates, five macaque monkeys were injected subretinally with rAAV.sFlt-1 (4 X 10" viral particles) in one eye, and a control vector (rAAV.gfp) in the contralateral eye. The eye health of the monkeys was periodically assessed after subretinal injection. There was no apparent complication related directly to subretinal injection of either the control or rAAVsFlt-1 vector. A transient conjunctival irritation and vitreous haze was noted in the week following injection, which cleared by the second week. Subretinal injection was unsuccessful in the right eye of one of the monkeys; therefore this animal was not subjected to further evaluation.
[00382] Subretinal injection of 40-100 uL of rAAV suspension lifted the retina, creating a bleb that housed the vector between the pigment epithelium and the photoreceptor layer in a localized manner. This bleb self-corrected within 24 to 48 hours. Except for a minor disturbance to the retinal pigment epithelium at the point of needle penetration, no other retinal abnormalities were observed for the duration of the follow-up (3 to 17 months post-injection). No other abnormalities or adverse events were observed; at no time was retinal detachment associated with the surgery.
[00383] To assess the long-term therapeutic efficacy of rAAVsFlt-1, the four injected monkeys were then subjected to intense laser photocoagulation 16 months after treatment with the vectors. Eight lesions were induced using laser in each eye, and the eyes then monitored for CNV at two and four weeks after laser treatment. After laser photocoagulation, only three of the four monkeys were analyzable, therefore, efficacy data was collected for three animals. None of three monkey eyes treated with rAAVsFt 1 developed CNV-related lesions and only weak fluorescein staining was observed, indicating minimum leakage / neovascularization. All contralateral eyes treated with control vector developed CNV-related lesions.
[00384] In a follow-up study aimed at assessing the safety and toxicity of rAAV.sFlt-1 injected into the subretinal space, eight monkeys were used: five were injected in their left eyes with rAAV.sFlt-1, two injected in their left eyes with rAAV.gfp, one injected in both eyes with recombinant Flt-1 protein and one was kept as uninjected control. The monkeys were examined preinjection and post injection by color fundus photography, fluorescein angiography and electroretinography. Blood was collected routinely for assaying sFLT-l levels and peripheral blood lymphocytes were isolated for flow cytometry to assess immune cell subset response. At time of sacrifice (3, 9 and 12 months post injection), tissues were collected for i) biodistribution studies on the rAAV.sFlt-1 vector using real time polymerase chain reaction on extracted genomic DNA; ii) hsFlt-1 protein and AAV2 capsid protein level quantitation by ELISA; and iii) histology of the eyes.
[00385] Color fundus photography, fluorescein angiography and electroretinography did not detect any adverse effect on the eye following injection. Plasma sFLT-1 level did not show any rAAV.sFlt-1 injection-related rise in level in any of the male or female monkeys examines. Except for an optic nerve sample, the rAAV.sFlt-1 sequence was not detected in the genomic DNA of any of the other tissues sampled (lymph nodes, spleen, liver, brain, brain, heart, spleen, cornea). Haematoxylin and eosin stained paraffin embedded sections of the eyes appeared normal.
[00386] While non-human primate anatomy is more similar to human anatomy than the anatomy of smaller mammals such as mice, limitations do exist which make studies in non-human primates intriguing, but not predictive of clinical results in humans. As noted above, the study in this example uses a laser injury model in which the animal has otherwise healthy retinal tissue. The retinal tissue was not degraded over time as in disease retinal tissue nor are the disease specific pathogenic factors present. Non-human primates frequently differ from humans with respect to biodistribution, pharmacokinetics and dose dependencies, antibody titer, immune response and inflammatory response in ways that are not predictable. Additional differences include the ILM (inner limiting membrane) and the volume of the vitreous chamber, which is approximately four times larger in humans than the nonhuman primates used in this study. The human inner limiting membrane, a barrier that acts to limit transport between the retina and the vitreous, is a more a more profound and effective barrier than the ILM of a monkey. Example 6 Safety Studies
[00387] In these studies, sFLT-1 protein was measured in the vitreous and plasma of animals using an enzyme linked immunosorbent assay kit for sFLT-1 protein detection. sFLT-1 protein level was upregulated in vitreous and eyes of animals injected with rAAV.sFlt-1. FIG. 3A shows the vitreous sFLT-1 protein level in monkey eyes injected with rAAV.sFlt-1 (left eye) and control eye injected with rAAV.gfp and uninjected eyes
(right eye). sFLT-1 protein levels were significantly higher in four out of the five rAAV.sFlt-1 injected eyes. Table 5.3.1 shows the sFLT-1 protein level in the mouse eyes that were not injected and that were injected with rAAV.sFlt-1 and enucleated at one month post injection. Overexpression of sFLT-1 in the eyes of mice and vitreous of monkeys did not have any adverse effect on their overall well-being. In monkeys, sFLT-1 overexpression in the vitreous did not have any effect on their retinal function and did not have any clinically or histologically evident toxic effects on the eyes. The significantly higher sFLT-1 protein levels in the rAAV.sFlt-1 injected eyes suggests long-term rAAV mediated hsFLT-1 expression and supports previous data on detection of viral mRNA sequence and presence of rAAV-mediated gfp expression in monkey retina 17 months post injection.
Table 1 Summarizing hsFLT-1 protein levels in rAAV.sFlt-1-injected mouse eyes and uninjected mouse eyes at 1 month post injection. Animal species and Treatment Time post injection sFLT-1 protein number of eyes (week) level (pg/mL) Mouse (n=1) uninjected NA 101.4 4.8 Mouse (n=1) uninjected NA 91.0 10.9 Mouse (n=1) uninjected NA 113.4 6.3 Mouse (n=1) uninjected NA 160.2 8.9 Mouse (n=1) rAAV.sFlt-1 injected 4 1034.7 44.3 Mouse (n=1) rAAV.sFlt-1 injected 4 610.3 16.3 Mouse (n=1) rAAV.sFlt-1 injected 4 1417.2 50 Mouse (n=1) rAAV.sFlt-1 injected 4 >max
[00388] Plasma hsFLT-1 levels in the monkeys did not show any trend at the different sampling times (FIG. 3B). This suggests that the injection of rAAV.sFlt-1 did not have an obvious effect on the plasma hsFLT-1 level. The fluctuating levels did not have any effect on the well-being of the monkeys.
Table 2 Immunogenicity Studies Species/Strain Method of Duration of Doses GLP administration dosing compliance C57B1/6 mice subretinal 1, 2 and 4 8 X 10 9 vector No weeks genomes Monkeys subretinal 12 months 8 X 10" vector No genomes
[00389] Table 2: Summary of animal strain, injection route, duration and dose of rAAV.sFlt-1 used in immunogenicity studies Example 7 Immunogenicity studies on mice
[00390] The cellular immune response to rAAV.sFlt-1 therapy was assessed in the mouse eye one, two and four weeks post injection using flow cytometry. Infiltrating leucocytes were identified on the basis of CD45 expression and classified as monocytes/granulocytes, B cells, CD4' T cells and CD8' T cells on the basis of CD1Ib, CD19, CD4 and CD8 expression, respectively. The posterior eye cup was collected from five mice in each group (rAAV.sFt-1-injected, PBS-injected, uninjected control) and pooled for analysis. As shown in FIG. 4A, there was no difference in the number of cells recovered from each group of mice over the course of this experiment. However, there was a significant increase in the number of CD45V cells one and two weeks post injection that disappeared by four weeks (FIG. 4B). Almost all of the increase seen at one week could be attributed to an increase in CD11b_ cells (FIG. 4C), since there was no difference in the number of CD4, CD8, and CD19V cells (FIGS. 4D-F). At two weeks though, there was no longer a significant difference in the number of CDlb- present in the eyes of AAV.sFlt-1 injected mice; instead, there was a significant increase in the number of CD4' and CD8' T cells and a possible trend towards an increase in B cells. The number of CD4' and CD8' cells fell sharply at four weeks yet remained significantly increased compared to the PBS-injected and uninjected mice. In contrast, there was no change in the number of CDlb, CD4, CD8' and CD19Vcells in the spleen during the course of this experiment (FIGS. 5A-E).
[00391] The function of the T cells infiltrating the retina was examined more closely by stimulating them with PMA/ionomycin or anti-CD3 and measuring intracellular IFN gamma production by flow cytometry. FIG. 6 shows that compared to uninjected controls, a small proportion of both CD4' and CD8' T cells were primed to produce IFN-gamma after the injection of rAAV.sFlt-1. The frequency of IFN-gamma producing cells did not vary significantly over the course of the experiment despite an apparent increase amongst CD8' T cells on day 3 (FIG. 6B). Lower levels of IFN-gamma were measured when the T cells were restimulated with a class I MHC-restricted epitope of rAAV capsid protein and some IFN-gamma was also detected in the absence of any stimulation (data not shown). Taken together, these results indicate a small proportion of the T cells infiltrating the eyes of rAAV.sFlt-1-injected mice had been recently activated to produce IFN-gamma, but this did not vary amongst either T cell subset during the course of this experiment.
[00392] The data presented for these experiments on the infiltration of immune cells into the eyes of AAV-sFLT-1 injected mice clearly show two waves of cell infiltration. There was an early wave of CDlb- cells at 1 week followed by a wave of CD4' and CD8 T cells at 2 weeks. Importantly, neither wave of infiltration was still present at 4 weeks, suggesting the infiltration had resolved itself. Importantly, sFLT-1 protein production was did not wane at this point, and indeed, continued to be expressed at very high levels.
[00393] The data on IFN-gamma production indicated that around 5% of the CD4' and CD8' T were recently primed, and this frequency did not vary over the course of the experiment. Hu. et al first described the breakdown of the blood-retinal barrier by activated T cells, and the data presented here is consistent with the infiltration of activated CD4' and CD8' cells. However, there was no evidence of an increase in the number of capsid-specific T cells amongst this population since restimulation with specific peptide only revealed low and levels of IFN-gamma production that did not change over the course of the experiment. Taken together, these observations suggest that the initial insult that occurred with injection of rAAV.sFlt-1 produced a short-lived wave of immune cell infiltration that resolved itself within four weeks, but failed to elicit an ongoing immune response that could harm the tissues of the eye or affect sFLT-1 expression. Example 8 Immunogenicity studies on monkeys
[00394] Immune response following subretinal injection of rAAV.sFlt-1 or rAAV.gfp was analyzed using a panel of antibodies that would identify changes in immune cell subset populations. The results are summarized in FIG. 4. In some monkeys, very small changes in immune cell subset populations were observed but they were not statistically significant. Despite this, this was followed by a more in-depth study of circulating cells. Specifically, we assessed the possibility that either the vector (rAAV) or the inserted gene product (sFLT-1) may cause immune activation. Activation of B cells and T cells was investigated (FIG. 5 and FIG. 6). Other lymphocyte populations were also analyzed to determine whether the therapy caused any observable differences that may be indicative of direct activation or a response to activation. Analysis was conducted using a combination of classic markers (Pitcher, 2002 #129), as well as a novel phenotypic analysis described in a recently published report (Miller, 2008 #126). Using a small subset of phenotypic markers (HLA-DR, Ki-67, and Bcl-2) we investigated whether following administration of rAAV-sFLT-1 CD4+ or CD8+ T cells and/or B cells showed signs of activation. In the studies published by Miller and colleagues, activated T cells display an activated effector phenotype characterized by the expression of the differentiation marker HLA-DR and the cell cycle associated nuclear antigen Ki-67, which is used as a marker for proliferation. Resting T cells do not express Ki-67, whereas cycling or recently divided T cells upregulate Ki-67 expression. A level of Ki-67 expression is normally detected as part of homeostatic cell cycling. Example 9 Biodistribution of rAAV.sFlt-1
[00395] Genomic DNA was extracted from tissues collected (optic nerve, lymph node, brain, heart, lungs, spleen, liver, cornea) immediately after euthanasia of monkeys. Real time polymerase chain reaction was performed on the genomic DNA to determine whether the rAAV.sFlt-1 vector construct injected in the subretinal space would be present elsewhere. Based on comparison of Ct values between known amounts of control plasmid pssv.C1.sflt-1 DNA, the rAAV.sFt-1 construct was found at low gene copy number in the optic nerve of one injected eye and not in any of the other tissues samples. This suggests that rAAV.sFlt-1 injected into the subretinal space remains mainly within the eye. Table 4 is a summary of the Ct values from genomic DNA extracted from monkeys that were not injected or injected with rAAV.sFlt-1- and rAAV.gfp.
Table 3: Ct values and Ct standard deviation values for the different genomic DNA and control plasmid DNA samples analyzed. Sample ID Ct Mean Ct Std Dev No DNA 0 copy 40.83970125 0.08415232 pssv.C1.hsFt-1 (0.045ng) 6000000 copies 18.17500393 0.522299978 pssv.C1.hsFLT-1 (0.009.ng) 1000000 copies 22.5311632 0.318372962 pssv.C1.hsFLT-1 (0.0009ng) 100000 copies 26.23701276 0.183232131 pssv.C1.hsFLT-1 (0.00009ng) 10000 copies 25.2483849 0.164140658 pssv.C1.hsFLT-1 (0.000009ng) 1000copies 29.4265616 0.415926721 Control uninjected monkey 1 LE Optic nerve 42.11 0.573 2 RE Optic nerve 43.58 0.323 3 axillary LN 45.86 1.319 4 cervical LN N/A N/A spleen 40.71 0.093 6 liver 44.16 0.604 Monkey 999: rAAV.sFlt-1 injected, euthanized 3 mo p.i. 7 LE optic nerve 39.13 0.137 8 RE optic nerve 42.25 0.153 9 axillary LN 40.87 0.728
Sample ID Ct Mean Ct Std Dev submandibular LN 40.54 0.453 11 spleen N/A N/A 12 liver 41.23 0.388 Monkey 8294: sFLT-1 protein injected, euthanized 3 mo p.i. 13 LE optic nerve 42.15 0.545 14 RE optic nerve 42.67 0.411 axillary LN 43.92 0.304 16 submandibular LN N/A N/A 17 spleen N/A N/A 18 liver 40.45 0.981 Monkey 8524: rAAV.sFlt-1 injected, euthanized 9 mo p.i. 19 left cornea 39.72 0.975 right cornea N/A N/A 21 axillary LN 44.12 0.216 22 cervical LN N/A N/A 23 spleen 37.91 0.668 24 liver 41.8 0.648 Monkey 8514: rAAV.sFlt-1 injected, euthanized 12 mo p.i. 25 right optic nerve 39.96 0.609 26 left optic nerve 28.9 0.057 27 axillary LN 40.08 0.221 28 cervical LN 41.27 0.063 29 spleen 39.22 0.196 liver 40.79 0.367 31 brain 41.14 0.798 32 heart 42.19 0.265 33 lungs 40.11 2.093 Monkey 8523: rAAV.sFlt-1 injected, euthanized 12 mo p.i. 34 left optic nerve 37.27 0.838 right optic nerve 37.92 1.181 36 axillary LN 38.55 0.895 37 cervical LN 39.68 0.583 39 spleen 36.44 0.519 liver 39.94 0.768 41 8523 brain 40.29 0.397 42 8523 heart 41.28 0.877 43 8523lungs 41.71 1.186 Monkey 8530: rAAV.sFlt-1 injected, euthanized 12 mo p.i. 44 left optic nerve 38.52 0.777 right optic nerve 40.67 1.354 46 axillary LN 42.49 0.841 47 cervical LN 38.55 0.895 48 spleen 36.44 0.519 49 liver 39.94 0.768 brain 40.29 0.397 51 heart 41.67 1.787 52 lungs 39.29 1.474 Monkey 8532: rAAV.sFlt-1 injected, euthanized 12 mo p.i. 53 left optic nerve 35.07 1.06 54 right optic nerve 38.14 0.665
Sample ID Ct Mean Ct Std Dev axillary LN 40.23 1.171 56 cervical LN 40.82 0.496 57 spleen 40.09 0.195 58 liver 40.63 1.1052 59 brain 38.68 0.295 heart 40.04 0.685 Monkey 8297: rAAV.sFlt-1 injected, euthanized 12 mo p.i. 61 left optic nerve 39.84 1.034 62 right optic nerve 42.17 1.247 63 axillary LN 41.19 2.174 64 cervical LN 41.38 2.040 spleen 39.09 1.273 66 liver 41.36 0.683 67 brain 37.84 1.243 68 heart 40.74 0.868 69 lungs 42.60 0.276
Example 10 Efficacy studies on a mouse model of retinal neovascularization
[00396] Transgenic mice generated through VEGF upregulation in the photoreceptors cells were used in the study. One eye was injected with rAAV.sFt-1 and the contralateral eye was injected with rAAV.gfp. The extent, intensity, and stage of neovascularization were graded by masked observers based on an agreed scale. The results shown that there was a statistically significant overall reduction in neovascularization grades from a median of 3 (severe) to a median of 1 (mild) at one month post injection ( P = 0.012). This low level of fluorescein leakage was maintained at three (median = 1; P = 0.001) and eight months (median 1; P = 0.001) post-rAAV.sFlt-1 injection suggesting the long-term, sustained therapeutic effect of rAAV.sFlt-1.
Table 4: Grading of eyes before and after AAV.sFlt-1 and AAV.gfp injection and photoreceptor numbers/rows at 8 months post-injection
Grades at time (months) Photoreceptor Rows of Regression post injection numbers photoreceptors Animal ID ao 1 3 8
243 L 1 0 0 0 68.8±14.1b 4-8 Moderate 243 R 1 3 3 3 0 0 None 244 L 2 1 1 1 72.8±18.8' 3-7 Moderate 244 R 1 3 2 1 5.8±3.1 0-1 None 247 L 2 2 0 0 80.8±31.0' 3-8 Significant 247 R 1 1 1 1 28.3+33.3 0-4 None
249 L 3 1 1 1 0 0 Significant 249 R 3 3 3 4 7.2+13.1 0-1 None 250 L 3 1 1 1 65.1+24.4 3-8 Significant 250 R 3 3 3 3 0 0 None 251 L 3 2 1 1 0 0 Significant 251 R 3 3 3 4 0 0 None 253 L 3 2 1 1 73.8+20.39 5-7 Significant 253 R 3 2 3 2 20+30.3 0-2 Moderate 254 L 3 1 0 0 61.8+14.3b 4-6 Significant 254 R 2 2 2 2 8.8+9.6 0-1 None 324 L 1 1 1 1 ND ND None 324 R 1 1 1 1 ND ND None 326 L 2 1 1 1 ND ND Moderate 326 R 2 2 2 2 ND ND None 327 L 2 2 0 0 ND ND Significant 327 R 2 3 2 2 ND ND None 329 L 3 2 2 2 ND ND Moderate 329 R 2 2 2 2 ND ND None 330 L 3 3 2 3 ND ND None 330 R 3 3 3 3 ND ND None
L= left eye injected with AAV.sFlt-1, R= right eye injected with AAV.GFP, ND= not done a3 days prior to injection with AAV vectors.
bStatistically significant difference in photoreceptor numbers (p<O.01) Example 11 Efficacy studies on a monkey model of laser-induced choroidal neovascularization
[00397] Five monkeys were injected in one eye with rAAV.sFlt-1 and in the other with rAAV.gfp. Subretinal injection was unsuccessful in the right eye of one of the monkeys; therefore this animal was not subjected to further evaluation. Subretinal injection of 40 100 gl of rAAV suspension lifted the retina, creating a bleb that housed the vector between the pigment epithelium and the photoreceptor layer in a localized manner. This bleb self-corrected within 24 to 48 hours. Except for a minor disturbance to the retinal pigment epithelium at the point of needle penetration, no other retinal abnormalities were observed for the duration of the follow-up (3 to 17 months post-injection). No other abnormalities or adverse events were observed; at no time was retinal detachment associated with the surgery.
[00398] To assess the long-term therapeutic efficacy of rAAVsFlt-1, the four injected monkeys were then subjected to intense laser photocoagulation 16 months after treatment with the vectors. Eight lesions were induced using laser in each eye, and the eyes then monitored for choroidal neovascularization at two and four weeks after laser treatment. After laser photocoagulation, only three of the four monkeys were analyzable, therefore, efficacy data was collected for three animals. None of the three monkey eyes treated with rAAVsFlt-1 developed choroidal neovascularization -related lesions and only weak fluorescein staining was observed, indicating minimum leakage / neovascularization. All contralateral eyes treated with control vector developed choroidal neovascularization related lesions. Efficacy data for the three animals are presented in Table 5.
Table 5: Effect of subretinal administration of rAAV.sFlt-1 or control (rAAV.gfp) vector on laser-induced CNV in macaque monkeys
CNV Lesions after Fluorescein Fundus Angiography Time of laser Right Eye (rAAV.sFlt-1) Left Eye (rAAV.gfp) Monkey induced CNV 2 Weeks 4 Weeks 2 Weeks 4 Weeks No. (months)* 1 16 0/8 0/8 1/8 6/8 2 16 0/8 0/8 0/8 3/8 4 16 0/8 0/8 0/8 2/8 *CNV was induced at 16 months after subretinal injection of rAAVs. INumber of macular lesions with neovascularization (fluorescein leakage) after laser photocoagulation. The retinal function of the monkeys was assessed by electroretinography. Amplitudes and implicit times from the responses of the injected eye and uninjected contralateral eye were calculated and compared pre-injection and at different times following injection. The results showed that injection of rAAV.sFt-1, the recombinant sFLT-1 protein or rAAV.gfp did not have any adverse effect on the retinal function of the monkeys. Example 12
[00399] The standard of care in treating wet AMD involves frequent intraocular injection of recombinant anti-VEGF proteins every 4-8 weeks. A rAAV construct has been developed for a potent (Kd ~10 pM), naturally occurring anti-VEGF protein, soluble Fms related tyrosine kinase-1 (sFlt-1), for the treatment of wet AMD. rAAV.sFt-1 was produced in accordance with FDA and ICH guidelines at the UNC Vector Core Human
Application Laboratory. An eight patient controlled study on the safety and efficacy of rAAV.sFlt-1 was conducted. Eligibility, inclusion and exclusion criteria for the study were as follows:
[00400] Eligibility Criteria Ages Eligible for Study: 65 Years and older Genders Eligible for Study: Both Accepts Healthy Volunteers: No
[00401] Inclusion Criteria:
* Age greater than or equal to 65 years;
* Subfoveal CNV secondary to AMD and with best corrected visual acuity of 20/80 - 20/400 or better in the other eye;
* Fluorescein angiogram of the study eye must show evidence of a leaking subfoveal choroidal neovascular lesion;
* Must be a candidate for anti-VEGF intravitreal injections;
* The entire dimension of the lesion must not exceed 12 Macular Photocoagulation Study disc areas;
* No previous retinal treatment of photodynamic therapy or laser;
* Able to provide informed consent;
* Participant has clinically acceptable laboratory and ECG at the time of enrolment; and
* Able to comply with protocol requirements, including follow-up visits.
[00402] Exclusion Criteria:
* Liver enzymes > 2 X upper limit of normal;
• Clinical evidence of active infection of any type, including adenovirus, hepatitis A, B, or C, or HIV virus;
* Any prior treatment for AMD in the study / control eye, excluding anti VEGF injections;
* A tear in the retinal pigmented epithelium;
* Extensive submacular scar tissue;
* Significant retinal disease other than subfoveal CNV AMD, such as diabetic retinopathy or retinal vascular occlusion;
* Significant non-retinal disease such as ocular atrophy or cataracts;
* Known allergy to fluorescein;
* Current use of prednisolone, other anti-inflammatory steroids or immune suppression drugs. Non-steroidal drugs such as aspirin are allowed;
* Any other significant disease or disorder which, in the opinion of the Investigator, may either put the participants at risk because of participation in the study, or may influence the result of the study, or the participant's ability to participate in the study;
* Participants who have participated in another research study involving an investigational product in the past 12 weeks; and
* Penicillin sensitivity.
[00403] Administration procedure: The pharmaceutical composition containing rAAV.sFlt-1 was administered to study subjects in a setting appropriate for subretinal injection according to the following procedure: 1. The subject's periocular skin and eyelid margins and eye lashes were cleaned with 5% povidone iodine prior to draping; 2. A sterile whole body drape was placed followed by an additional eye drape. 3. Inserted eyelid speculum, ensuring that it is well positioned underneath the eyelids to direct the eyelashes away from the field and protected by eye drape. 4. Inserted 3 x 23G or 25G vitrectomy ports; 5. Connected saline infusion to 1st port; 6. Inserted fiber optic into 2nd port; 7. A 36G-41G subretinal cannula was connected to drug syringe via microconnector in the 3rd port; 8. Under microscopic control, 100 microlitres is injected under the retina; 9. Following injection, instruments and ports were withdrawn; 10. Chloramphenicol ointment was applied; 11. Atropine 1% drop from sterile single use container was instilled; and 12. An eye pad and eye shield were applied.
[004041 The results of the rAAV.sFlt-1 study are summarized herein. The eight enrolled subjects (mean age 77 years) all had active subfoveal choroidal neovascularization, with visual acuity of 20/40 to 20/400, and had previously received between 1 and 25 intravitreal injections of ranibizumab. The patients were randomly distributed into three groups, a control group and two experimental groups. All patients received intravitreal injections of ranibizumab on day 1and day 30 of the study. On day 7, 1 x 1010 vector genomes of rAAV.sFlt-1 in 100ul volume was administered via subretinal injection to the first experimental group and 1 x 1011 vector genomes of rAAV.sFlt-1 in 100ul volume was administered via subretinal injection to the second experimental group. In all six cases for patients in the experimental groups, the bleb of sub-retinal fluid resolved within 4 hours. After 24 hours, most of the air in the vitreous had absorbed and only the retinal injection site remained visible. One patient developed a minor hemorrhage associated with the procedure that did not affect vision. As expected following vitrectomy, there was a transient increase in neutrophil counts that returned to normal by 14 days post injection. Vector sequence was found in the tears of one subject at one day post injection that cleared by day 30. Other than this single occurrence, AAV2 was not detected in any of the subjects'blood, saliva or urine samples either by qPCR or ELISA to date. Background levels of the naturally occurring sFLT-1 protein showed a high baseline variation in the urine, serum, and saliva with no increase following treatment. sFLT-1 levels in the vitreous also varied among subjects (975-2085pg/ml). Blood biochemistry, complete blood count, and T-cell response, remained without any significant change compared to baseline. Subretinal injection of rAAV.sFlt-1 showed no clinically significant retinal toxicity as assessed by serial ophthalmic examinations over a two month period. No superficial, anterior segment or vitreous inflammatory signs were present in any of the subjects. There was no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in any of the patients. A summary of anti-VEGF treatments, both initial and rescue, are summarized for each patient in Table 6.
Table 6: Summary of Ranibizumab Injections by Patient Subject Da Da Da Da Da Da Da Da Da Da Da Da Da Da y0 y y y y y y y y y y y y y 30 60 90 120 150 180 210 224 252 280 308 336 364 R1001 X X 0 0 0 0 0 No No 0 0 0 0 0 visi visi t t
R1002 X X 0 0 0 0 0 0 0 No 0 0 0 0 visi t
R1003 X X 0 X X 0 0 X 0 X 0 0 X 0 (control )
R1004 X X 0 0 0 0 0 0 0 0 0 0 0 X R1005 X X 0 0 0 0 0 No 0 0 0 0 0 0 visi t
R1006 X X 0 X No 0 0 0 0 0 0 0 0 0 visi t
R1007 X X 0 0 0 X 0 0 0 0 0 0 0 0 (control )
R1008 X X 0 X 0 0 No 0 0 0 0 0 0 0 visi t
Note: Per protocol, injections at Day 0 and Day.30 were mandatory for all patients in the study'\
[00405] Notably, none of the patients in the experimental groups required rescue treatment at day 60 and most of the patients in the lower dose experimental group required 0 rescue treatments at day 90, day 120, day 150, day 180 or day 210 or day 270 or day 365 (1 year). The control patient required multiple rescue treatments. These results are unexpected and extend the promise of gene therapy for the large cohort of elderly patients suffering from wet AMD. Generally, patients treated with current anti
VEGF therapy, such as intravitreal injections of a VEGF inhibitor protein or other anti VEGF agent will require additional injections in 30, 60 or 90 days.
[00406] Maximum expression levels of sFLT-1 in a study subject or a patient are reached six to eight weeks after subretinal administration of rAAV.sFLT-1. During this so called "ramp-up" period, at least one, two or three intravitreal injections of an anti-VEGF agent are injected at 15 to 45 day intervals, and preferably about 30 day intervals, to prevent disease progression. It is preferred to administer the first intravitreal injection of an anti VEGF agent between 1 to 30 days, and preferably between 5 to 10 days, prior to administration of rAAV.sFlt-1 to allow for absorption of the intravitreally injected anti VEGF agent (Lucentis or Avastin or Eylea or other non sFLT agents). If this first intravitreal injection is administered less than 24 hours prior to subretinal administration of rAAV.sFLT, it may be washed out of the vitreous during the subretinal injection procedure leading to a sub-therapeutic anti-VEGF agent concentration and disease progression.
[00407] After the completion of the ramp period, patients who express sufficient sFLT-1 to treat or prevent progression of their AMD may not need additional intravitreal anti VEGF injections although it is expect that they will remain under the care of a physician. Patients are monitored and treated on an as-needed basis based on objective criteria, such as an increased center point retinal thickness measurement with an optical coherence tomography.
[00408] In this study, patients in the control and both experimental groups were evaluated for signs of active choroidal neovascularization on an approximately monthly basis and retreated with intravitreal ranibizumab if any of the following criteria was met: - >10 Early Treatment Diabetic Retinopathy Study (ETDRS) letter loss from subject's previous visit (attributable to retinal causes), OR a decrease of >5 ETDRS letters from previous visit in conjunction with patient perception of functional loss; - Any increased, new, or persistent subsensory, sub-Retinal Pigment Epithelial
(RPE), or intraretinal fluid on OCT; - Signs of increased CNV leakage via FA.
Example 13 Optical Coherence Tomography (OCT)
[00409] Spectral Domain Optical Coherence Tomography (SD-OCT) was performed using approved equipment (Heidelberg Spectralis@ SD-OCT) and standard techniques to monitor center point retinal thickness and fluid leakage in the retina of patients.
[00410] Optical Coherence Tomography (OCT) is a non-contact medical imaging technology similar to ultrasound and MRI. With OCT, reflected light is used to produce detailed cross-sectional and 3D images of the eye. The SPECTRALIS@ SD-OCT simultaneously measures multiple wavelengths of reflected light across a spectrum, hence the name spectral domain. The increased speed and number of scans translates into higher resolution and a better chance of observing disease. In patients with wet AMD, the detection of new retinal fluid or a clinically significant increase in retinal thickness may be detected by SD-OCT. (Adhi et al., Curr Opin Ophthalmol. 2013 May; 24(3):213-21; Malamos et al.,_Invest Ophthalmol Vis Sci. 2009 Oct; 50(10):4926-33). Detection of these symptoms in a patient with AMD indicates disease progression that warrants treatment with an anti-VEGF therapy such as Lucentis or Eylea.
[00411] The retinal health and symptoms of AMD progression of each subject in the study were monitored via SD-OCT. At least 6 radial scans through the macula, each approximately 6mm in length, were taken; and OCT images/ scans were collected at each specified visit. The SD-OCT images were evaluated for the presence of intraretinal fluid by a masked reader and the central retinal thickness was measured using Heidelberg Heyex SD-OCT software. The central retinal thickness results for each visit for 8 patients are presented below in Table 7.
Table 7: Mean Change in Central Retinal Thickness from Baseline at Day 0 in microns by dosing group Study Day 14 28 56 84 112 140 168 196 224 252 280 308 336 364 Control - 24 - - - - - - - - - - -
101 194 178 176 199 131 124 186 190 198 172 157 138 Low dose - - - - - - - - - - - - -
140 115 161 189 173 163 157 147 149 155 161 144 127 134 High - - - - - - - - - - - - -
Dose 254 245 266 254 245 239 235 209 219 225 215 239 246 245
[00412] As shown in table 7, the mean central retinal thickness of the subjects in all dosing cohorts decreased after administration of the intravitreal injections of the anti VEGF protein (Lucentis) at the beginning of the study as required by protocol. As expected, the central retinal thickness of the patients in the control group starts to increase and fluid can be seen on SD-OCT images within 30 - 90 days of the administration of the anti-VEGF protein. Unexpectedly, the central retinal thickness of the subjects in the low and high dosing groups is generally well controlled by rAAV.sFlt-1 and does not increase over time. New intraretinal fluid does not occur in the retinas of the low dose group subjects or the high dose group subjects. This is shown by OCT, for example, in Figure 24. At 12 months, the central retinal thickness of subjects treated with rAAV.sFt-1 did not increase by more than 50 microns, or by more than 100 microns, or by more than 250 microns within 12 months of administration of a pharmaceutical composition comprising rAAV.sFlt-1. When compared against baseline, the central retinal thickness of human subjects treated with rAAV.sFlt-1 decreased by 50 microns or in some cases by 100 microns or in some cases, by 200 microns. This decrease was observed within 8 weeks of administering sFlt-1 and was maintained at 3 months, 6 months, 9 months and 12 months. This result is surprising and is unknown in in the clinical treatment of AMD and ocular neovascularization in human subjects. More generally, without additional administrations of an anti-VEGF protein or other VEGF inhibitor, intraretinal fluid and an increase in central retinal thickness will be observed with 30 days, 60 days, 90 days or 180 days of an initial anti-VEGF treatment. Fluorescein Angiography (FA)
[00413] FA was performed using a standard technique. Transit images are taken of the study eye. Mid and late phase images are taken of the study and non-study eye; and FA is be obtained at each specified visit. Biodistribution Studies
[00414] Dissemination of vector was investigated by polymerase chain reaction (PCR) amplification of vector genomes isolated from samples of tears, plasma, urine and saliva. Biodistribution of vector and sFLT-1 was investigated by ELISA for sFLT-1 and AAV2 capsids in plasma, tears and saliva. Extraction of DNA
[00415] Samples (100-300 ul) were pipetted onto Sample Collection Cards (Qiagen, Valencia, CA) or sterile foam tip applicators. DNA was extracted from each sample as per manufacturer's protocol. Purified DNA was dissolved in 50 ul of elution buffer. The amount of DNA present was determined by spectrophotometry. Detection of rAAV.sFlt-1 by Real Time PCR
[00416] Genomic DNA samples (0.5-1 gg) were screened for the presence of the AAV.sFlt-1 vector using the TaqMan@ Gene Expression Assays (Applied Biosystems, U.S.A.). The assay consists of a pair of unlabeled PCR primers which amplifies a fragment between the AAV2 and the sFLT-1 sequences, and a TaqMan@ probe with a FAMTM or VIC@ dye label and minor groove binder moiety on the 5' end, and non fluorescent quencher dye on the 3' end. The cycling conditions were 1 hold for 2 minutes at 50°C and another hold at 95°C for 20 seconds, followed by 45 cycles of 95°C for 3 seconds and 60°C for 30 seconds.
[00417] Samples positive for the rAAV.sFlt-1 fragment were further tested and the gene copy number of rAAV.sFlt-1 present were quantified by real time polymerase chain reaction (PCR). Between 0.5-1.0 ug of extracted DNA were amplified in 20-ul reaction mixes containing Platinum SYBR Green qPCR Supermix-UDG (Invitrogen, Carlsbad, California, USA) and 0.5 uM of each primer using the IQ5 Bio-Rad real-time PCR system (Bio-Rad, Hercules, California, USA). A similar set of samples spiked with plasmid DNA containing the target sequence was set up in parallel as the spiked samples. The primer pair used (forward: CACTAGTCCAGTGTGGTGGA; reverse: AGCCAGGAGACAACCACTTC) was designed with the aid of Primer3 Output (Whitehead Institute, MA, USA) to amplify the region from the vector cDNA into the sFLT-1 gene using the Rotorgene (Corbett). The cycling conditions that were used were: 2 min 50.0 °C, 2 min 95.0 °C and 60 three-step cycles of 95.0 °C 20 s, 60.0 °C for 20 s and 72.0 °C for 20 s. A standard curve was generated in each run from 10-fold dilutions of plasmid DNA (pSSV.sFlt-1) which had the same target vector sequence. Each sample was analyzed in triplicate. Quantifying sFlt-1 Protein Concentration by ELISA
[00418] The concentration of sFLT-1 present in the plasma, tears and saliva were measured quantitatively by ELISA using a Quantikine ELISA kit (R&D Systems, Minneapolis, MN) which was based on the sandwich immunoassay technique. The samples (100 ul) were added to the 96-well plate coated with a monoclonal antibody specific for VEGF R1/sFLT-1 and allowed to incubate for 2 hours. Any unbound sFLT-1 was removed by washing with a buffer. Following incubation with an enzyme-linked polyclonal antibody specific for VEGF R1/sFLT-1, the excess of antibody-enzyme conjugate was washed off and the samples were then be incubated with a substrate solution. Enzyme-catalyzed chromogen formation was quantified by measuring the visible absorbance at 450 nm. The concentrations of sFLT-1 (in pg/ml) in the samples were calculated from the absorbance value using a calibration curve plotted with recombinant human sFLT-1. Detection of AAV2 by ELISA
[00419] Presence of AAV2 capsid in the plasma, tears, urine and saliva was analyzed using the AAV2 Titration ELISA Kit (American Research Products, Inc., Belmont, Massachusetts, USA). This kit is based on a sandwich ELISA technique and uses a mouse monoclonal antibody specific for a conformational epitope on assembled AAV particles. This monoclonal antibody is coated onto microplate strips and is used to capture AAV particles from the specimen. Captured AAV particles were detected in two steps. First a biotin-conjugated monoclonal antibody to AAV was bound to the immune complex. In the second step streptavidin peroxidase conjugate reacts with the biotin molecules. Addition of substrate solution results in a color reaction which was proportional to specifically bound virus particles. The absorbance was measured photometrically at 450 nm. The kit control provided contains an AAV particle preparation of empty capsids and it allowed the quantitative determination of samples of an unknown particle titer. Samples (100 ul) were added to the plates and the assay was to be carried out according to the manufacturer's protocol. Detection of Neutralizing AAV-2 Antibody
[00420] Plasma was assayed for the ability to block the transduction of HEK293 cells with AAV2.gfp. Patient's plasma was serially diluted in normal mouse serum in multi well plates. AAV2.gfp was added to each well and plates were incubated at 37C for 1 hour before addition to HEK293 cells in triplicate. The neutralizing antibody titer was expressed as the plasma dilution that resulted in 50% inhibition of transduction by AAV2 gfp. Maximum gfp activity was represented by vector diluted in normal mouse serum; maximum inhibition was represented by medium only in normal mouse serum. Baseline plasma from each subject was assayed alongside each post-op sample. Green cells from transduction of 293T cells with AAV2.gfp were counted in the test wells after 48 hours and compared with the number of green cells in the baseline serum sample.
Detection of Anti-AAV2 Antibodies
[00421] To detect plasma antibodies to AAV2 capsid, enhanced protein-binding ELISA plates were coated with 10 9 vg/ml of AAV2 (Vector Core Facility, North Carolina) at 4 °C overnight. The plates were be blocked at 37 °C for 2 hours and then are incubated at 4 °C overnight with serially diluted anti-AAV2 monoclonal antibody (Industries International, Concord, MA) or 1:50, 1:100, 1:200, or 1:400 dilutions of patient plasma. The plates were incubated with horse radish peroxidase (HRP)-conjugated anti-human Ig at 37 °C for 2 hours, then with tetramethyl benzidine (TMP) substrate and hydrogen peroxide (H202). The reaction was stopped by phosphoric acid (H3PO4) and read at 450 nm on a plate reader. The titer of anti-AAV2 antibodies were calculated based on the standard curve of the commercial antibody determined in parallel. Each value was determined in triplicate. Geographic Atrophy
[00422] The human study subjects were examined for signs of geographic atrophy in their treated and untreated eyes according to standard techniques. Increases geographic atrophy was not observed in patients treated with rAAV.sFlt-1 at 3 months, 6 months, 9 months, or 12 months. It is hypothesized that the treatment may stop progression of geographic atrophy in a treated eye for up to 15 months, 18 months, 24 months, 36 months, 5 years and 10 years. Example 14
[00423] To further test the safety and efficacy of rAAV.sFlt-1 for the treatment of wet AMD and choroidal neovascularization, forty (40) additional subjects were enrolled in a controlled clinical study. As in Example 12, rAAV.sFlt-1 was produced in accordance with FDA and ICH guidelines at the UNC Vector Core Human Application Laboratory. Eligibility, inclusion and exclusion criteria for the study were as follows:
[00424] Eligibility: Ages Eligible for Study: 55 Years and older Genders Eligible for Study: Both Accepts Healthy Volunteers: No
[00425] Inclusion Criteria:
* Age greater than or equal to 55 years;
* Subfoveal CNV secondary to AMD and with best corrected visual acuity in the study eye of 20/30 - 20/400 and 20/200 or better in the other eye;
* Fluorescein angiogram of the study eye must show evidence of a leaking subfoveal choroidal neovascular lesion; or choroidal neovascularization currently under active management with anti-VEGF therapy;
* Must be a candidate for anti-VEGF intravitreal injections;
* The entire dimension of the lesion must not exceed 12 Macular Photocoagulation Study disc areas;
* No previous retinal treatment of photodynamic therapy or laser;
* Able to provide informed consent;
* Participant has clinically acceptable laboratory parameters and ECG at the time of enrollment; and
* Able to comply with protocol requirements, including follow-up visits.
[00426] Exclusion Criteria:
* Liver enzymes > 2 X upper limit of normal;
• Clinical evidence of active infection of any type, including adenovirus, hepatitis A, B, or C, or HIV virus; or documented history of hepatitis B or hepatitis C;
* Any prior treatment for AMD in the study / control eye, excluding anti VEGF injections;
* A tear in the retinal pigmented epithelium;
* Extensive sub-fovial scarring, extensive geographic atrophy, or thick subretinal blood in the study eye as determined by the investigator;
* Significant retinal disease other than subfoveal CNV AMD, such as diabetic retinopathy or retinal vascular occlusion, that could compromise vision in the study eye;
* Significant non-retinal disease such as ocular atrophy or significant cataract in the study eye, including central comeal scarring that affects visual acuity, glaucoma with field defects, or any measurable uveitis;
* Known allergy to fluorescein;
* Current use of prednisolone, other anti-inflammatory steroids or immune suppression drugs. Inhaled steroids and non-steroidal drugs such as aspirin are allowed;
* Any other significant disease or disorder which, in the opinion of the Investigator, may either put the participants at risk because of participation in the study, or may influence the result of the study, or the participant's ability to participate in the study;
* Participants who have participated in another research study involving an investigational product in the past 12 weeks; and
* Penicillin sensitivity confirmed by participant medical records.
[00427] Initial enrolled subjects had active subfoveal choroidal neovascularization, with visual acuity in the study eye of 20/30 to 20/400, and had previously received between 0 and 25 intravitreal injections of ranibizumab. The patients were randomly distributed into a control group or an experimental group until a total of 14 patients control patients and 26 experiments patients were enrolled. All patients received intravitreal injections of ranibizumab on day 1 and day 30 of the study. On day 7, 1 x 1011 vector genomes of rAAV.sFlt-1 in 100 ul volume was administered via subretinal injection to the experimental group.
[00428] As in the study in Example 12, maximum expression levels of sFLT-1 in a study subject or a patient were reached six to eight weeks after subretinal administration of rAAV.sFLT-1. During this so called "ramp-up" period, at least one, two or three intravitreal injections of an anti-VEGF agent were injected at 15 to 45 day intervals, and preferably about 30 day intervals, to prevent disease progression. It is preferred to administer the first intravitreal injection of an anti-VEGF agent between 1 to 30 days, and preferably between 5 to 10 days, prior to administration of rAAV.sFLT-1 to allow for absorption of the intravitreally injected anti-VEGF agent (Lucentis or Avastin or Eylea or other non sFLT agents). If this first intravitreal injection is administered less than 24 hours prior to subretinal administration of rAAV.sFLT, it may be washed out of the vitreous during the subretinal injection procedure leading to a sub-therapeutic anti-VEGF agent concentration and disease progression.
[00429] After the completion of the ramp period, patients who expressed sufficient sFLT 1 to treat or prevent progression of their AMD or other symptoms of choroidal neovascularization did not need additional intravitreal anti-VEGF injections although it is expected that they will remain under the care of a physician.
[00430] In this study recited in this example, patients in the control and experimental groups were evaluated for signs of active choroidal neovascularization on an approximately monthly basis and retreated with intravitreal ranibizumab if any of the following criteria was met: - >10 Early Treatment Diabetic Retinopathy Study (ETDRS) letter loss from subject's previous visit (attributable to retinal causes), OR a decrease of >5 ETDRS letters from previous visit in conjunction with patient perception of functional loss; - Any increased, new, or persistent subsensory, sub-Retinal Pigment Epithelial
(RPE), or intraretinal fluid on OCT; - Signs of increased CNV leakage via FA. Example 15
[00431] To test the safety and efficacy of rAAV.sFlt-1 for the prevention or prophylaxis of the ocular neovascular disease Age Related Macular degeneration (AMD), an additional controlled clinical study with forty (150) patients is conducted. rAAV(bv).sFlt 1 is produced in accordance with FDA and ICH guidelines at Lonza Houston, Inc. (Houston, Texas). Eligibility, inclusion and exclusion criteria for the study were as follows:
[00432] Eligibility: • Ages Eligible for Study: 50 Years and older • Genders Eligible for Study: Both • Accepts Healthy Volunteers: Yes
[00433] Inclusion Criteria:
• Patients with nonexudative AMD (either categories 2, 3 or 4 according to the AREDS criteria; in group 4 the eyes with no-advanced AMD will be included); Patients with AMD classified as either "wet" or "dry" are included; • Age between 50 and 90 years;
* Able to understand and comply with the requirements of the trial;
• Visual acuity > 0.4;
[00434] Exclusion Criteria:
• Currently enrolled in an ophthalmic clinical trial; • Eyes with concomitant macular or choroidal disorders other than AMD and with indefinite signs of AMD; • Eyes with a diagnosis of exudative AMD with active subretinal neovascularization (SRNV) or CNV lesions requiring laser photocoagulation in the study eye; • Subjects with significant ocular lens opacities causing vision decrease; • Subjects with amblyopia; • Subjects with optic nerve disease (neuropathy, atrophy, papilledema), unstable glaucoma as defined by intraocular pressures greater than 25 mm Hg, 3 or more glaucoma medications, C/D of 0.8 or greater and visual fields consistent with glaucoma; history of retina-vitreous surgery, degenerative myopia, active posterior intraocular inflammatory disease, chronic use of topical ocular steroid medications, vasoproliferative retinopathies (other than AMD), rhegmatogenous retinal detachment, and inherited macular dystrophies; • Subjects with demand type pacemakers or epilepsy; • Subjects with uncontrolled hypertension (defined as diastolic of 90 or greater and systolic of 150 or greater); • Subjects with recent history (within the previous year) of cerebral vascular disease; • manifested with transient ischemic attacks (TIA's) or cerebral vascular accidents (CVA's); • Subjects with a history of AIDS; * Subjects who have had intraocular surgery in trial eye within 3 months prior to enrolling in the trial; * Patients who are unwilling to adhere to visit examination schedules;
[00435] Primary Outcome Measures:
MPOD and multifocal electroretinograms [ Time Frame: 1 year ][Designated as safety issue: Yes]
[00436] Secondary Outcome Measures:
The safety and efficacy of rAAV(bv).sFlt-1 in reducing the risk of the development of advanced AMD. [Time Frame: 1 year ][Designated as safety issue: Yes ]
Table 9: Experimental DesignArms
Arms Assigned Interventions
Active Comparator: Group I Drug: of rAAV(bv).sFlt-1 1 x 1010 vector genomes of rAAV(bv).sFlt-1 in 1 x 1010 vector genomes of rAAV.sFlt 100ul volume is administered via subretinal 1in100ulvolumeisadministeredvia injection to the experimental group within 30- subretinal injection to the day intervals for 36 months experimentalgroup.
Active Comparator: Group II Drug: of rAAV(bv).sFlt-1 1 x 1011 vector genomes of rAAV(bv).sFlt-1 in 1x1011vectorgenomesofrAAV.sFlt 100ul volume is administered via subretinal 1in100ulvolumeisadministeredvia injection to the experimental group within 180- subretinalinjectiontothe 365 day intervals for 36 months experimentalgroup.
Placebo Comparator: Group Placebo Drug Placebo: Saline solution Drug Placebo: Saline solution Drug Placebo: Saline solution, until one year. Patients on placebo showing early stages of AMD may receive rAAV(bv).sFlt-1
Active Comparator: Ranibizumab 0.3 mg Drug: Ranibizumab
Patients receive ranibizumab 0.3 mg monthly Sterilesolutionforintravitreal administered intravitreally for 36 months. injection.
Other Name: Lucentis
Example 16
[00437] To test the safety and efficacy of rAAV.sFlt-1 for the treatment of the ocular neovascular disease Diabetic Macular Edema (DME), an additional controlled clinical study with forty (40) patients is conducted. rAAV(bv).sFlt-1 is produced in accordance with FDA and ICH guidelines at Lonza Houston, Inc. (Houston, Texas). Eligibility, inclusion and exclusion criteria for the study were as follows:
[00438] Eligibility: • Ages Eligible for Study: 18 Years and older • Genders Eligible for Study: Both • Accepts Healthy Volunteers: No
[00439] General Inclusion Criteria: • Subjects are eligible if the following criteria are met: • Willingness to provide written informed consent and, at U.S. sites, Health Insurance Portability and Accountability Act (HIPAA) authorization, and in other countries, as applicable according to national laws. • Diabetes mellitus (Type 1 or 2). • Retinal thickening secondary to diabetes mellitus (DME) involving the center of the fovea with central macular thickness > 275 min the center subfield as assessed on optical coherence tomography (OCT). • Best corrected visual acuity (BCVA) score in the study eye of 20/40 to 20/320 approximate Snellen equivalent using the Early Treatment Diabetic Retinopathy Study (ETDRS) protocol at an initial testing distance of 4 meters. • Decrease in vision determined to be primarily the result of DME and not to other causes. • Ability (in the opinion of the investigator) and willingness to return for all scheduled visits and assessments.
[00440] Exclusion Criteria: • History of vitreoretinal surgery in the study eye. • Panretinal photocoagulation (PRP) or macular laser photocoagulation in the study eye within 3 months of screening. • Proliferative diabetic retinopathy (PDR) in the study eye, with the exception of inactive, regressed PDR. • Iris neovascularization, vitreous hemorrhage, traction retinal detachment, or preretinal fibrosis involving the macula in the study eye. • Vitreomacular traction or epiretinal membrane in the study eye. • Ocular inflammation (including trace or above) in the study eye. • History of idiopathic or autoimmune uveitis in either eye. • Structural damage to the center of the macula in the study eye that is likely to preclude
improvement in VA following the resolution of macular edema, including atrophy of the retinal pigment epithelium (RPE), subretinal fibrosis, or organized hard-exudate plaque. • Ocular disorders in the study eye that may confound interpretation of study results, including retinal vascular occlusion, retinal detachment, macular hole, or choroidal neovascularization (CNV) of any cause (eg, age-related macular degeneration (AMD), ocular histoplasmosis, or pathologic myopia). • Cataract surgery in the study eye within 3 months, yttrium-aluminum-garnet (YAG) laser capsulotomy within the past 2 months, or any other intraocular surgery within the 90 days preceding Day 0. • Uncontrolled glaucoma or previous filtration surgery in the study eye. • Uncontrolled blood pressure. • History of cerebral vascular accident or myocardial infarction within 3 months prior to Day 0. • Uncontrolled diabetes mellitus. • Renal failure requiring dialysis or renal transplant. • History of other disease, metabolic dysfunction, physical examination finding, or clinical laboratory finding giving reasonable suspicion of a disease or condition that contraindicates the use an investigational drug, might affect interpretation of the results of the study, or renders the subject at high risk from treatment complications.
[00441] Primary Outcome Measures: • Percentage of Patients Who Gain > 15 Letters in Their Best Corrected Visual Acuity (BCVA) Score From Baseline at Month 12 [ Time Frame: Baseline to Month 12][ Designated as safety issue: No ]
[00442] Secondary Outcome Measures: • Mean Change From Baseline in Best Corrected Visual Acuity (BCVA) Score at Months 12, 24 and 36 • Percentage of Patients With a Visual Acuity (VA) Snellen Equivalent of 20/40 or Better at Months 12, 24 and 36. • Mean Change From Baseline in Central Foveal Thickness as measured by SD-OCT at Months 12, 24 and 36. • Reduction in Frequency of concomitant anti-VEGF treatment (e.g. Lucentis, Avastin, Macugen or Eyelea) [ Designated as safety issue: No]
Table 10: Experimental Design Arms for DME Study
Arms Assigned Interventions
Experimental: I Low Dose Drug: rAAV.sFlt-1 (AVA-01) 1 x 1010 vector genomes of rAAV(bv).sFlt-1 in 1 x 10vector genomes of 100ul volume was administered via subretinal rAAV.sFlt-1 in 100ul volume was injection to the experimental group. administered via subretinal Follow-up phase: Participants on rAAV.sFlt-1 are injection to the experimental monitored monthly and receive rescue treatments group. with intravitreal anti-VEGF therapy if they meet the study criteria for retreatment.
Experimental: II High Dose Drug: rAAV.sFlt-1 (AVA-01) 1 x 1011 vector genomes of rAAV.sFlt-1 in 100ul 1 x 1011 vector genomes of volume was administered via subretinal injection to rAAV.sFlt-1 in 100ul volume was the experimental group. administered via subretinal Follow-up phase: Participants on rAAV.sFlt-1 are injection to the experimental monitored monthly and receive rescue treatments group. with intravitreal anti-VEGF therapy if they meet the study criteria for retreatment.
Active Comparator: Ranibizumab injection 0.3 mg. Drug: Ranibizumab Participants receive two initial injections of Sterile solution for intravitreal Ranibizumab at Day 0 and Day 30. injection. Follow-up phase: Participants are monitored Other Name: Lucentis monthly and receive rescue treatments with Ranibizumab if they meet the study criteria for retreatment.
[00443] Initial enrolled subjects have DME, with visual acuity in the study eye of 20/40 to 20/320, and will have previously received between 0 and 25 intravitreal injections of ranibizumab or aflibercept. The patients are randomly distributed into a control group or two experimental groups until a total of 14 patients control patients and 13 low dose experimental patients and 13 high dose experimental patients are enrolled. All patients received intravitreal injections of ranibizumab on day 1and day 30 of the study. On day
7, 1 x 10" or 1 x 10" vector genomes of rAAV(bv).sFlt-1 in 100 ul volume are administered via subretinal injection to the experimental groups.
[00444] As in the study in Example 12, maximum expression levels of sFLT-1 in a study subject or a patient are reached are six to eight weeks after subretinal administration of rAAV(bv).sFLT-1. During this so called "ramp-up" period, at least one, two or three intravitreal injections of an anti-VEGF agent are injected at 15 to 45 day intervals, and preferably about 30 day intervals, to prevent disease progression. It is preferred to administer the first intravitreal injection of an anti-VEGF agent between 1 to 30 days, and preferably between 5 to 10 days, prior to administration of rAAV(bv).sFLT-1 to allow for absorption of the intravitreally injected anti-VEGF agent (Lucentis or Avastin or Eylea or other non sFLT agents). If this first intravitreal injection is administered less than 24 hours prior to subretinal administration of rAAV(bv).sFLT, it may be washed out of the vitreous during the subretinal injection procedure leading to a sub-therapeutic anti-VEGF agent concentration and disease progression.
[00445] After the completion of the ramp period, patients who express sufficient sFLT-1 to treat or prevent progression of their DME may not need additional intravitreal anti VEGF injections although it is expect that they will remain under the care of a physician.
[00446] In this study recited in this example, patients in the control and experimental groups are evaluated for signs of active or new DME and neovascularization on an approximately monthly basis and are retreated with intravitreal ranibizumab if any of the following criteria was met: - >10 Early Treatment Diabetic Retinopathy Study (ETDRS) letter loss from subject's previous visit (attributable to retinal causes), OR a decrease of >5 ETDRS letters from previous visit in conjunction with patient perception of functional loss; - Any increased, new, or persistent subsensory, sub-Retinal Pigment Epithelial
(RPE), or intraretinal fluid on OCT; - Signs of increased CNV leakage via FA. Example 17
[00447] To test the safety and efficacy of rAAV.sFlt-1 for the treatment of the ocular neovascular disease Retinal Vein Occlusion (RVO), an additional controlled clinical study with forty (40) patients is conducted. The clinical study is performed with patients of 2 cohorts, 1 cohort including patients with Central Retinal Vein Occlusion (CRVO) and 1 cohort including Branched Retinal Vein Occlusion (BRVO). As in Example 15, rAAV(bv).sFt-1 is produced in accordance with FDA and ICH guidelines at Lonza Houston, Inc. (Houston, Texas). Eligibility, inclusion and exclusion criteria for the study were as follows:
[00448] Inclusion Criteria:
• Center-involved macular edema secondary to central retinal vein occlusion (CRVO) or Branch-involved macular edema secondary to BRVO for no longer than 9 months with mean central subfield thickness > 250 pm on optical coherence tomography (OCT); • Adults > 18 years; • Early treatment diabetic retinopathy study (ETDRS) best corrected visual acuity (BCVA) of 20/40 to 20/320 (73 to 24 letters) in the study eye;
[00449] Exclusion Criteria:
• Any prior treatment with anti-VEGF agents in the study eye (Pegaptanib sodium, anecortave acetate, bevacizumab, ranibizumab, etc.) or previous administration of systemic anti-angiogenic medications; • Prior panretinal laser photocoagulation or macular laser photocoagulation in the study eye • CRVO disease duration > 9 months from date of diagnosis; BRVO disease duration > 9 months from date of diagnosis; • Previous use of intraocular corticosteroids in the study eye or use of periocular corticosteroids in the study eye within the 3 months prior to Day 1; • Iris neovascularization, vitreous hemorrhage, traction retinal detachment, or preretinal fibrosis involving the macula in either the study eye or fellow eye;
[0001] Primary Outcome Measures: • Mean Change From Baseline in Best Corrected Visual Acuity (BCVA) Score at 6 Months. [Time Frame: Baseline and 6 months ] [Designated as safety issue: No] .
• Defined study baseline range of Early Treatment Diabetic Retinopathy Study (ETDRS) Best Corrected Visual Acuity (BCVA) letter score of 73 to 24 (= Acuity of 20/40 to 20/320) in the study eye; a higher score represents better functioning. Nominator = (Number of participants who maintained vision * 100); Denominator= Number of participants analyzed.
[0002] Secondary Outcome Measures: • Percentage of Participants Who Gained > 15 Letters in BCVA Score at Month 6 Compared With Baseline. • Mean Change From Baseline in Central Retinal Thickness (CRT) at 6 months [ Time Frame: Baseline and 6 months] [ Designated as safety issue: No ] • Reduction in frequency of concomitant anti-VEGF treatment ((e.g. Lucentis, Avastin, Macugen or Eyelea) [ Designated as safety issue: No]
Table 11: Experimental Design Arms for BRVO/CRVO Study
Arms Assigned Interventions
Experimental: 1 x 1010 vector genomes of Biological: 1 x 1010 vector genomes rAAV.sFlt-1 of rAAV.sFlt-1. Subretinal injection. in 100ul volume is administered via subretinal Drug: Ranibizumab injection 0.3 mg injection to the experimental group, on Day 7. if meet reinjection criteria. Follow-up phase: Participants on rAAV.sFt-1 are monitored monthly and receive rescue treatments with intravitreal anti-VEGF therapy if they meet the study criteria for retreatment.
Experimental: 1 x 101 vector genomes of Biological: 1 x 1011 vector genomes rAAV.sFlt-1 of rAAV.sFlt-1. Subretinal injection. in 100ul volume is administered via subretinal Drug: Ranibizumab injection 0.3 mg injection to the experimental group, on Day 7. if meet reinjection criteria. Follow-up phase: Participants on rAAV.sFt-1 are monitored monthly and receive rescue treatments with intravitreal anti-VEGF therapy if they meet the study criteria for retreatment.
Active Comparator: Ranibizumab injection 0.3 Drug: Ranibizumab injection 0.3 mg mg. Ranibizumab injection 0.3 mg in a Participants receive two initial injections of single-dose regimen given at Day 0 Ranibizumab at Day 0 and Day 30. and Day 30. Follow-up phase: Participants are monitored Other Name: Lucentis monthly and receive rescue treatments with Ranibizumab if they meet the study criteria for retreatment.
[00450] Initial enrolled subjects have CRVO or BRVO, with visual acuity in the study eye of 20/40 to 20/320, and will have previously received between 0 and 25 intravitreal injections of ranibizumab or aflibercept. The patients are randomly distributed into a control group or two experimental groups until a total of 14 patients control patients and 13 low dose experimental patients and 13 high dose experimental patients are enrolled. All patients received intravitreal injections of ranibizumab on day 1 and day 30 of the study. On day 7, 1 x 1010 or 1 x 1011vector genomes of rAAV(bv).sFlt-1 in 100 ul volume are administered via subretinal injection to the experimental groups.
[00451] As in the study in Example 14, maximum expression levels of sFLT-1 in a study subject or a patient are reached are six to eight weeks after subretinal administration of rAAV(bv).sFLT-1 . After the completion of the ramp period, as described in Example 14, patients who express sufficient sFLT-1 to treat or prevent progression of their BRVO or CRVO may not need additional intravitreal anti-VEGF injections although it is expect that they will remain under the care of a physician.
[00452] In this study recited in this example, patients in the control and experimental groups are evaluated for signs of active or new retinal vein occlusion and neovascularization on an approximately monthly basis and are retreated with intravitreal ranibizumab if any of the following criteria was met: - >10 Early Treatment Diabetic Retinopathy Study (ETDRS) letter loss from subject's previous visit (attributable to retinal causes), OR a decrease of >5 ETDRS letters from previous visit in conjunction with patient perception of functional loss; - Any increased, new, or persistent subsensory, sub-Retinal Pigment Epithelial (RPE), or intraretinal fluid on OCT; - Signs of increased CNV leakage via FA.
[00453] Throughout this specification and the claims which follow, unless the context requires otherwise, the word "comprise", and variations such as "comprises" and "comprising", will be understood to imply the inclusion of a stated integer or step or group of integers or steps but not the exclusion of any other integer or step or group of integers or steps.
[00454] The reference in this specification to any prior publication (or information derived from it), or to any matter which is known, is not, and should not be taken as an acknowledgment or admission or any form of suggestion that that prior publication (or information derived from it) or known matter forms part of the common general knowledge in the field of endeavour to which this specification relates.
SEQUENCE LISTING Jan 2021
<110> CONSTABLE, IAN J. RAKOCZY, ELIZABETH P. LAI, CHOOI-MAY CHALBERG JR., THOMAS W.
<120> TREATMENT OF AMD USING AAV SFLT-1
<130> 43016-702.201 2021200253
<140> <141>
<150> 61/775,440 <151> 2013-03-08
<160> 114
<170> PatentIn version 3.5
<210> 1 <211> 20 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 1 atggaaaaac gccagcaacg 20
<210> 2 <211> 881 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 2 aaaaggatct aggtgaagat cctttttgat aatctcatga ccaaaatccc ttaacgtgag 60
ttttcgttcc actgagcgtc agaccccgta gaaaagatca aaggatcttc ttgagatcct 120
ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc agcggtggtt 180
tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt cagcagagcg 240
cagataccaa atactgtcct tctagtgtag ccgtagttag gccaccactt caagaactct 300
gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc tgccagtggc 360
gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa ggcgcagcgg 420
tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac ctacaccgaa 480 2021200253
ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg gagaaaggcg 540
gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga gcttccaggg 600
ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact tgagcgtcga 660
tttttgtgat gctcgtcagg ggggcggagc ctatggaaaa acgccagcaa cgcggccttt 720
ttacggttcc tggccttttg ctggcctttt gctcacatgt tctttcctgc gttatcccct 780
gattctgtgg ataaccgtat taccgccttt gagtgagctg ataccgctcg ccgcagccga 840
acgaccgagc gcagcgagtc agtgagcgag gaagcggaag a 881
<210> 3 <211> 362 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 3 gcgccacgct tcccgaaggg agaaaggcgg acaggtatcc ggtaagcggc agggtcggaa 60
caggagagcg cacgagggag cttccagggg gaaacgcctg gtatctttat agtcctgtcg 120
ggtttcgcca cctctgactt gagcgtcgat ttttgtgatg ctcgtcaggg gggcggagcc 180
tatggaaaaa cgccagcaac gcggcctttt tacggttcct ggccttttgc tggccttttg 240
ctcacatgtt ctttcctgcg ttatcccctg attctgtgga taaccgtatt accgcctttg 300
agtgagctga taccgctcgc cgcagccgaa cgaccgagcg cagcgagtca gtgagcgagg 360
aa 362
<210> 4 <211> 615 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide 2021200253
<400> 4 aaaggatctt cttgagatcc tttttttctg cgcgtaatct gctgcttgca aacaaaaaaa 60
ccaccgctac cagcggtggt ttgtttgccg gatcaagagc taccaactct ttttccgaag 120
gtaactggct tcagcagagc gcagatacca aatactgttc ttctagtgta gccgtagtta 180
ggccaccact tcaagaactc tgtagcaccg cctacatacc tcgctctgct aatcctgtta 240
ccagtggctg ctgccagtgg cgataagtcg tgtcttaccg ggttggactc aagacgatag 300
ttaccggata aggcgcagcg gtcgggctga acggggggtt cgtgcacaca gcccagcttg 360
gagcgaacga cctacaccga actgagatac ctacagcgtg agctatgaga aagcgccacg 420
cttcccgaag ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg aacaggagag 480
cgcacgaggg agcttccagg gggaaacgcc tggtatcttt atagtcctgt cgggtttcgc 540
cacctctgac ttgagcgtcg atttttgtga tgctcgtcag gggggcggag cctatggaaa 600
aacgccagca acgcg 615
<210> 5 <211> 1258 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 5 tgttgtttgt cggttaacgt cgacctagag ctgcctcgcg cgtttcggtg atgacggtga 60
aaacctctga cacatgcagc tcccggagac ggtcacagct tgtctgtaag cggatgccgg 120 gagcagacaa gcccgtcagg gcgcgtcagc gggtgttggc gggtgtcggg gcgcagccat 180 Jan 2021 gacccagtca cgtagcgata gcggagtgta tactggctta actatgcggc atcagagcag 240 attgtactga gagtgcacca tatgcggtgt gaaataccgc acagatgcgt aaggagaaaa 300 taccgcatca ggcgctcttc cgcttcctcg ctcactgact cgctgcgctc ggtcgttcgg 360 ctgcggcgag cggtatcagc tcactcaaag gcggtaatac ggttatccac agaatcaggg 420 2021200253 gataacgcag gaaagaacat gtgagcaaaa ggccagcaaa aggccaggaa ccgtaaaaag 480 gccgcgttgc tggcgttttt ccataggctc cgcccccctg acgagcatca caaaaatcga 540 cgctcaagtc agaggtggcg aaacccgaca ggactataaa gataccaggc gtttccccct 600 ggaagctccc tcgtgcgctc tcctgttccg accctgccgc ttaccggata cctgtccgcc 660 tttctccctt cgggaagcgt ggcgctttct caatgctcac gctgtaggta tctcagttcg 720 gtgtaggtcg ttcgctccaa gctgggctgt gtgcacgaac cccccgttca gcccgaccgc 780 tgcgccttat ccggtaacta tcgtcttgag tccaacccgg taagacacga cttatcgcca 840 ctggcagcag ccactggtaa caggattagc agagcgaggt atgtaggcgg tgctacagag 900 ttcttgaagt ggtggcctaa ctacggctac actagaagga cagtatttgg tatctgcgct 960 ctgctgaagc cagttacctt cggaaaaaga gttggtagct cttgatccgg caaacaaacc 1020 accgctggta gcggtggttt ttttgtttgc aagcagcaga ttacgcgcag aaaaaaagga 1080 tctcaagaag atcctttgat cttttctacg gggtctgacg ctcagtggaa cgaaaactca 1140 cgttaaggga ttttggtcat gagattatca aaaaggatct tcacctagat ccttttaaat 1200 taaaaatgaa gttttaaatc aatctaaagt atatatgagt aaacttggtc tgacagtt 1258
<210> 6 <211> 674 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 6 cccgtagaaa agatcaaagg atcttcttga gatccttttt ttctgcgcgt aatctgctgc 60 Jan 2021 ttgcaaacaa aaaaaccacc gctaccagcg gtggtttgtt tgccggatca agagctacca 120 actctttttc cgaaggtaac tggcttcagc agagcgcaga taccaaatac tgtccttcta 180 gtgtagccgt agttaggcca ccacttcaag aactctgtag caccgcctac atacctcgct 240 ctgctaatcc tgttaccagt ggctgctgcc agtggcgata agtcgtgtct taccgggttg 300 2021200253 gactcaagac gatagttacc ggataaggcg cagcggtcgg gctgaacggg gggttcgtgc 360 acacagccca gcttggagcg aacgacctac accgaactga gatacctaca gcgtgagcat 420 tgagaaagcg ccacgcttcc cgaagggaga aaggcggaca ggtatccggt aagcggcagg 480 gtcggaacag gagagcgcac gagggagctt ccagggggaa acgcctggta tctttatagt 540 cctgtcgggt ttcgccacct ctgacttgag cgtcgatttt tgtgatgctc gtcagggggg 600 cggagcctat ggaaaaacgc cagcaacgcg gcctttttac ggttcctggc cttttgctgg 660 ccttttgctc acat 674
<210> 7 <211> 674 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 7 atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt gctggcgttt 60
ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag tcagaggtgg 120
cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc cctcgtgcgc 180
tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc ttcgggaagc 240
gtggcgcttt ctcatagctc acgctgtagg tatctcagtt cggtgtaggt cgttcgctcc 300
aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt atccggtaac 360
tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc agccactggt 420 aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa gtggtggcct 480 Jan 2021 aactacggct acactagaag gacagtattt ggtatctgcg ctctgctgaa gccagttacc 540 ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg tagcggtggt 600 ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga agatcctttg 660 atcttttcta cggg 674 2021200253
<210> 8 <211> 830 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 8 ttaataagat gatcttcttg agatcgtttt ggtctgcgcg taatctcttg ctctgaaaac 60
gaaaaaaccg ccttgcaggg cggtttttcg aaggttctct gagctaccaa ctctttgaac 120
cgaggtaact ggcttggagg agcgcagtca ccaaaacttg tcctttcagt ttagccttaa 180
ccggcgcatg acttcaagac taactcctct aaatcaatta ccagtggctg ctgccagtgg 240
tgcttttgca tgtctttccg ggttggactc aagacgatag ttaccggata aggcgcagcg 300
gtcggactga acggggggtt cgtgcataca gtccagcttg gagcgaactg cctacccgga 360
actgagtgtc aggcgtggaa tgagacaaac gcggccataa cagcggaatg acaccggtaa 420
accgaaaggc aggaacagga gagcgcacga gggagccgcc agggggaaac gcctggtatc 480
tttatagtcc tgtcgggttt cgccaccact gatttgagcg tcagatttcg tgatgcttgt 540
caggggggcg gagcctatgg aaaaacggct ttgccgcggc cctctcactt ccctgttaag 600
tatcttcctg gcatcttcca ggaaatctcc gccccgttcg taagccattt ccgctcgccg 660
cagtcgaacg accgagcgta gcgagtcagt gagcgaggaa gcggaatata tcctgtatca 720
catattctgc tgacgcaccg gtgcagcctt ttttctcctg ccacatgaag cacttcactg 780
acaccctcat cagtgccaac atagtaagcc agtatacact ccgctagcgc 830
<210> 9 <211> 237 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide 2021200253
<400> 9 aaacgccagc aacgcggcct ttttacggtt cctggccttt tgctggcctt ttgctcacat 60
gttctttcct gcgttatccc ctgattctgt ggataaccgt attaccgcct ttgagtgagc 120
tgataccgct cgccgcagcc gaacgaccga gcgcagcgag tcagtgagcg aggaagcgga 180
agagcgccca atacgcaaac cgcctctccc cgcgcgttgg ccgattcatt aatgcag 237
<210> 10 <211> 456 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 10 aaattgtaaa cgttaatatt ttgttaaaat tcgcgttaaa tatttgttaa atcagctcat 60
tttttaacca ataggccgaa atcggcaaaa tcccttataa atcaaaagaa tagaccgcga 120
tagggttgag tgttgttcca gtttggaaca agagtccact attaaagaac gtggactcca 180
acgtcaaagg gcgaaaaacc gtctatcagg gcgatggccc actacgtgaa ccatcaccca 240
aatcaagttt tttgcggtcg aggtgccgta aagctctaaa tcggaaccct aaagggagcc 300
cccgatttag agcttgacgg ggaaagccgg cgaacgtggc gagaaaggaa gggaagaaag 360
cgaaaggagc gggcgctagg gcgctggcaa gtgtagcggt cacgctgcgc gtaaccacca 420
cacccgccgc gcttaatgcg ccgctacagg gcgcgt 456
<210> 11 <211> 307
<212> DNA Jan 2021
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 11 ggcgcattaa gcgcggcggg tgtggtggtt acgcgcagcg tgaccgctac acttgccagc 60 2021200253
gccctagcgc ccgctccttt cgctttcttc ccttcctttc tcgccacgtt cgccggcttt 120
ccccgtcaag ctctaaatcg ggggctccct ttagggttcc gatttagtgc tttacggcac 180
ctcgacccca aaaaacttga ttagggtgat ggttcacgta gtgggccatc gccctgatag 240
acggtttttc gccctttgac gttggagtcc acgttcttta atagtggact cttgttccaa 300
actggaa 307
<210> 12 <211> 456 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 12 acgcgccctg tagcggcgca ttaagcgcgg cgggtgtggt ggttacgcgc agcgtgaccg 60
ctacacttgc cagcgcccta gcgcccgctc ctttcgcttt cttcccttcc tttctcgcca 120
cgttcgccgg ctttccccgt caagctctaa atcgggggct ccctttaggg ttccgattta 180
gtgctttacg gcacctcgac cccaaaaaac ttgattaggg tgatggttca cgtagtgggc 240
catcgccctg atagacggtt tttcgccctt tgacgttgga gtccacgttc tttaatagtg 300
gactcttgtt ccaaactgga acaacactca accctatctc ggtctattct tttgatttat 360
aagggatttt gccgatttcg gcctattggt taaaaaatga gctgatttaa caaaaattta 420
acgcgaattt taacaaaata ttaacgctta caattt 456
<210> 13
<211> 66 Jan 2021
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 13 aatttttttt atttatgcag aggccgaggc cgcctcggcc tctgagctat tccagaagta 60 2021200253
gtgagg 66
<210> 14 <211> 362 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 14 tggacagcga acgcacacta caaccttgga tagagttagg aattagtaga cggacatact 60
acagggattt aaatgataat cattctcaaa aatgacacca gataagccta aatcagataa 120
cagccccaaa agcgagcttt tggggtgcct tttagacggt gctaggtttt tgacagcaga 180
taagcctaaa tcagataaca gccgaatcga taagccttag ttggttaagg gggcaggaaa 240
ttcatattga acaaatgttt agttaagtgt agaataatca tacatcctta ttaagggcaa 300
gcatactcaa gccccacaaa gtgtgcttga aatccttgta aggggaaatc ccccttaacc 360
cc 362
<210> 15 <211> 589 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 15 ttgagatcct ttttttctgc gcgtaatctg ctgcttgcaa acaaaaaaac caccgctacc 60 Jan 2021 agcggtggtt tgtttgccgg atcaagagct accaactctt tttccgaagg taactggctt 120 cagcagagcg cagataccaa atactgtcct tctagtgtag ccgtagttag gccaccactt 180 caagaactct gtagcaccgc ctacatacct cgctctgcta atcctgttac cagtggctgc 240 tgccagtggc gataagtcgt gtcttaccgg gttggactca agacgatagt taccggataa 300 2021200253 ggcgcagcgg tcgggctgaa cggggggttc gtgcacacag cccagcttgg agcgaacgac 360 ctacaccgaa ctgagatacc tacagcgtga gctatgagaa agcgccacgc ttcccgaagg 420 gagaaaggcg gacaggtatc cggtaagcgg cagggtcgga acaggagagc gcacgaggga 480 gcttccaggg ggaaacgcct ggtatcttta tagtcctgtc gggtttcgcc acctctgact 540 tgagcgtcga tttttgtgat gctcgtcagg ggggcggagc ctatggaaa 589
<210> 16 <211> 459 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 16 tttacgcgcc ctgtagcggc gcattaagcg cggcgggtgt ggtggttacg cgcagcgtga 60
ccgctacact tgccagcgcc ctagcgcccg ctcctttcgc tttcttccct tcctttctcg 120
ccacgttcgc cggctttccc cgtcaagctc taaatcgggg gctcccttta gggttccgat 180
ttagtgcttt acggcacctc gaccccaaaa aacttgattt gggtgatggt tcacgtagtg 240
ggccatcgcc ctgatagacg gtttttcgcc ctttgacgtt ggagtccacg ttctttaata 300
gtggactctt gttccaaact tgaacaacac tcaaccctat ctcgggctat tcttttgatt 360
tataagggat tttgccgatt tcggcctatt ggttaaaaaa tgagctgatt taacaaaaat 420
ttaacgcgaa ttttaacaaa atattaacgt ttacaattt 459
<210> 17
<211> 602 Jan 2021
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 17 atgcattagt tattaatagt aatcaattac ggggtcatta gttcatagcc catatatgga 60 2021200253
gttccgcgtt acataactta cggtaaatgg cccgcctggc tgaccgccca acgacccccg 120
cccattgacg tcaataatga cgtatgttcc catagtaacg ccaataggga ctttccattg 180
acgtcaatgg gtggagtatt tacggtaaac tgcccacttg gcagtacatc aagtgtatca 240
tatgccaagt acgcccccta ttgacgtcaa tgacggtaaa tggcccgcct ggcattatgc 300
ccagtacatg accttatggg actttcctac ttggcagtac atctacgtat tagtcatcgc 360
tattaccatg gtgatgcggt tttggcagta catcaatggg cgtggatagc ggtttgactc 420
acggggattt ccaagtctcc accccattga cgtcaatggg agtttgtttt ggcaccaaaa 480
tcaacgggac tttccaaaat gtcgtaacaa ctccgcccca ttgacgcaaa tgggcggtag 540
gcgtgtacgg tgggaggtct atataagcag agctggttta gtgaaccgtc agatccgcta 600
gc 602
<210> 18 <211> 741 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 18 tcaatattgg ccattagcca tattattcat tggttatata gcataaatca atattggcta 60
ttggccattg catacgttgt atctatatca taatatgtac atttatattg gctcatgtcc 120
aatatgaccg ccatgttggc attgattatt gactagttat taatagtaat caattacggg 180
gtcattagtt catagcccat atatggagtt ccgcgttaca taacttacgg taaatggccc 240
gcctggctga ccgcccaacg acccccgccc attgacgtca ataatgacgt atgttcccat 300
agtaacgcca atagggactt tccattgacg tcaatgggtg gagtatttac ggtaaactgc 360
ccacttggca gtacatcaag tgtatcatat gccaagtccg ccccctattg acgtcaatga 420
cggtaaatgg cccgcctggc attatgccca gtacatgacc ttacgggact ttcctacttg 480
gcagtacatc tacgtattag tcatcgctat taccatggtg atgcggtttt ggcagtacac 540 2021200253
caatgggcgt ggatagcggt ttgactcacg gggatttcca agtctccacc ccattgacgt 600
caatgggagt ttgttttggc accaaaatca acgggacttt ccaaaatgtc gtaataaccc 660
cgccccgttg acgcaaatgg gcggtaggcg tgtacggtgg gaggtctata taagcagagc 720
tcgtttagtg aaccgtcaga t 741
<210> 19 <211> 664 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 19 acgcgtacta gttattaata gtaatcaatt acggggtcat tagttcatag cccatatatg 60
gagttccgcg ttacataact tacggtaaat ggcccgcctg gctgaccgcc caacgacccc 120
cgcccattga cgtcaataat gacgtatgtt cccatagtaa cgtcaatagg gactttccat 180
tgacgtcaat gggtggagta tttacggtaa actgcccact tggcagtaca tcaagtgtat 240
catatgccaa gtacgccccc tattgacgtc aatgacggta aatggcccgc ctggcattat 300
gcccagtaca tgaccttatg ggactttcct acttggcagt acatctacgt attagtcatc 360
gctattacca tggtgatgcg gttttggcag tacatcaatg ggcgtggata gcggtttgac 420
tcacggggat ttccaagtct ccaccccatt gacgtcaatg ggagtttgtt ttgcaccaaa 480
atcaacggga ctttccaaaa tgtcgtaaca actccgcccc attgacgcaa atgggcggta 540
ggcgtgtacg gtgggaggtc tatataagca gagctcgttt agtgaaccgt cagatcgcct 600
ggagacgcca tccacgctgt tttgacctcc atagaagaca ccgggaccga tccagcctcc 660
gtac 664
<210> 20 <211> 663 <212> DNA <213> Artificial Sequence 2021200253
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 20 acgcgtggag ctagttatta atagtaatca attacggggt cattagttca tagcccatat 60
atggagttcc gcgttacata acttacggta aatggcccgc ctggctgacc gcccaacgac 120
ccccgcccat tgacgtcaat aatgacgtat gttcccatag taacgtcaat agggactttc 180
cattgacgtc aatgggtgga gtatttacgg taaactgccc acttggcagt acatcaagtg 240
tatcatatgc caagtacgcc ccctattgac gtcaatgacg gtaaatggcc cgcctggcat 300
tatgcccagt acatgacctt atgggacttt cctacttggc agtacatcta cgtattagtc 360
atcgctatta ccatggtgat gcggttttgg cagtacatca atgggcgtgg atagcggttt 420
gactcacggg gatttccaag tctccacccc attgacgtca atgggagttt gttttgcacc 480
aaaatcaacg ggactttcca aaatgtcgta acaactccgc cccattgacg caaatgggcg 540
gtaggcgtgt acggtgggag gtctatataa gcagagctcg tttagtgaac cgtcagatcg 600
cctggagacg ccatccacgc tgttttgacc tccatagaag acaccgggac cgatccagcc 660
tcc 663
<210> 21 <211> 589 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 21 tagttattaa tagtaatcaa ttacggggtc attagttcat agcccatata tggagttccg 60
cgttacataa cttacggtaa atggcccgcc tggctgaccg cccaacgacc cccgcccatt 120
gacgtcaata atgacgtatg ttcccatagt aacgccaata gggactttcc attgacgtca 180
atgggtggag tatttacggt aaactgccca cttggcagta catcaagtgt atcatatgcc 240 2021200253
aagtacgccc cctattgacg tcaatgacgg taaatggccc gcctggcatt atgcccagta 300
catgacctta tgggactttc ctacttggca gtacatctac gtattagtca tcgctattac 360
catggtgatg cggttttggc agtacatcaa tgggcgtgga tagcggtttg actcacgggg 420
atttccaagt ctccacccca ttgacgtcaa tgggagtttg ttttggcacc aaaatcaacg 480
ggactttcca aaatgtcgta acaactccgc cccattgacg caaatgggcg gtaggcgtgt 540
acggtgggag gtctatataa gcagagctgg tttagtgaac cgtcagatc 589
<210> 22 <211> 670 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 22 gcggccgcac gcgtggagct agttattaat agtaatcaat tacggggtca ttagttcata 60
gcccatatat ggagttccgc gttacataac ttacggtaaa tggcccgcct ggctgaccgc 120
ccaacgaccc ccgcccattg acgtcaataa tgacgtatgt tcccatagta acgtcaatag 180
ggactttcca ttgacgtcaa tgggtggagt atttacggta aactgcccac ttggcagtac 240
atcaagtgta tcatatgcca agtacgcccc ctattgacgt caatgacggt aaatggcccg 300
cctggcatta tgcccagtac atgaccttat gggactttcc tacttggcag tacatctacg 360
tattagtcat cgctattacc atggtgatgc ggttttggca gtacatcaat gggcgtggat 420
agcggtttga ctcacgggga tttccaagtc tccaccccat tgacgtcaat gggagtttgt 480 tttgcaccaa aatcaacggg actttccaaa atgtcgtaac aactccgccc cattgacgca 540 Jan 2021 aatgggcggt aggcgtgtac ggtgggaggt ctatataagc agagctcgtt tagtgaaccg 600 tcagatcgcc tggagacgcc atccacgctg ttttgacctc catagaagac accgggaccg 660 atccagcctc 670
<210> 23 2021200253
<211> 490 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 23 ggcgaccgcc cagcgacccc cgcccgttga cgtcaatagt gacgtatgtt cccatagtaa 60
cgccaatagg gactttccat tgacgtcaat gggtggagta tttacggtaa actgcccact 120
tggcagtaca tcaagtgtat catatgccaa gtccgccccc tattgacgtc aatgacggta 180
aatggcccgc ctagcattat gcccagtaca tgaccttacg ggagtttcct acttggcagt 240
acatctacgt attagtcatc gctattacca tggtgatgcg gttttggcag tacaccaatg 300
ggcgtggata gcggtttgac tcacggggat ttccaagtct ccaccccatt gacgtcaatg 360
ggagtttgtt ttggcaccaa aatcaacggg actttccaaa atgtcgtaat aaccccgccc 420
cgttgaccca aatgggcggt aggcgtgtac ggtgggaggt ctatatagca gagctcgttt 480
agtgaaccgt 490
<210> 24 <211> 887 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 24 ttagtcatat gttacttggc agaggccgca tggaaagtcc ctggacgtgg gacatctgat 60
taatacgtga ggaggtcagc catgttcttt ttggcaaagg actacggtca ttggacgttt 120
gattggcatg ggatagggtc agccagagtt aacagtgttc ttttggcaaa gggatacgtg 180
gaaagccccg ggccatttac agtaaactga tacggggaca aagcacagcc atatttagtc 240
atgtactgct tggcagaggg tctatggaaa gtccctggac gtgggacgtc tgattaatat 300
gaaagaaggt cagccagagg tagctgtgtc ctttttggca aagggatacg gttatgggac 360 2021200253
gtttgattgg actgggatag ggtcagccag agttaacagt gttcttttgg caaaggaaac 420
gtggaaagtc ccgggccatt tacagtaaac tgatactggg acaaagtaca cccatattta 480
gtcatgttct ttttggcaaa gagcatctgg aaagtcccgg gcagcattat agtcacttgg 540
cagagggaaa gggtcactca gagttaagta catctttcca gggccaatat tccagtaaat 600
tacacttagt tttatgcaaa tcagccacaa aggggatttt cccggtcaat tatgactttt 660
tccttagtca tgcggtatcc aattactgcc aaattggcag tacatactag gtgattcact 720
gacatttggc cgtcctctgg aaagtccctg gaaaccgctc aagtactgta tcatggtgac 780
tttgcatttt tggagagcac gccccactcc accattggtc cacgtaccct atgggggagt 840
ggtttatgag tatataaggg gctccggttt agaagccggg cagagcg 887
<210> 25 <211> 935 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 25 attgacgtca ataatgacgt atgttcccat agtaacgcca atagggactt tccattgacg 60
tcaatgggtg gactatttac ggtaaactgc ccacttggca gtacatcaag tgtatcatat 120
gccaagtacg ccccctattg acgtcaatga cggtaaatgg cccgcctggc attatgccca 180
gtacatgacc ttatgggact ttcctacttg gcagtacatc tacgtattag tcatcgctat 240
taccatggtc gaggtgagcc ccacgttctg cttcactctc cccatctccc ccccctcccc 300
acccccaatt ttgtatttat ttatttttta attattttgt gcagcgatgg gggcgggggg 360
gggggggggg cgcgcgccag gcggggcggg gcggggcgag gggcggggcg gggcgaggcg 420
gagaggtgcg gcggcagcca atcagagcgg cgcgctccga aagtttcctt ttatggcgag 480
gcggcggcgg cggcggccct ataaaaagcg aagcgcgcgg cgggcgggag tcgctgcgac 540
gctgccttcg ccccgtgccc cgctccgccg ccgcctcgcg ccgcccgccc cggctctgac 600 2021200253
tgaccgcgtt actcccacag gtgagcgggc gggacggccc ttctcctccg ggctgtaatt 660
agcgcttggt ttaatgacgg cttgtttctt ttctgtggct gcgtgaaagc cttgaggggc 720
tccgggaggg ccctttgtgc ggggggagcg gctcggggct gtccgcgggg ggacggctgc 780
cttcgggggg gacggggcag ggcggggttc ggcttctggc gtgtgaccgg cggctctaga 840
gcctctgcta accatgttca tgccttcttc tttttcctac agctcctggg caacgtgctg 900
gttattgtgc tgtctcatca ttttggcaaa gaatt 935
<210> 26 <211> 367 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 26 gtcgaggtga gccccacgtt ctgcttcact ctccccatct cccccccctc cccaccccca 60
attttgtatt tatttatttt ttaattattt tgtgcagcga tgggggcggg gggggggggg 120
gcgcgcgcca ggcggggcgg ggcggggcga ggggcggggc ggggcgaggc ggagaggtgc 180
ggcggcagcc aatcagagcg gcgcgctccg aaagtttcct tttatggcga ggcggcggcg 240
gcggcggccc tataaaaagc gaagcgcgcg gcgggcggga gtcgctgcgt tgccttcgcc 300
ccgtgccccg ctccgcgccg cctcgcgccg cccgccccgg ctctgactga ccgcgttact 360
cccacag 367
<210> 27 Jan 2021
<211> 278 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 27 2021200253
tcgaggtgag ccccacgttc tgcttcactc tccccatctc ccccccctcc ccacccccaa 60
ttttgtattt atttattttt taattatttt gtgcagcgat gggggcgggg gggggggggg 120
ggcgcgcgcc aggcggggcg gggcggggcg aggggcgggg cggggcgagg cggagaggtg 180
cggcggcagc caatcagagc ggcgcgctcc gaaagtttcc ttttatggcg aggcggcggc 240
ggcggcggcc ctataaaaag cgaagcgcgc ggcgggcg 278
<210> 28 <211> 109 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 28 ccagaaaaag tcaacacact tgtcataaag tcccgacgaa gtaaaacaag cggaattaat 60
tcaatttggc caaaaaacct agtataaaga cgtgcatagt gtcgggaat 109
<210> 29 <211> 999 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 29 cttcctcacg ctgaacccct ttaaccgttt cagtggtcgt gagtcttcta atctgactgt 60
gtgacgatgt tttaaggatt tggaggattg aggaggatca cctggtcagg taaatctgaa 120
atatccggat tacatcggaa gttgagcaca cggaaaaaca aaagactctt attggattta 180
gatccgtcag ccacctgctg ctgctcttca tcatcaggcg tcttcatcgc cctgcagtgg 240
gcctgacaac agcttgtgtt tattacacta aaaactttat aaacccatca caaaccatat 300
cacacagcag ggacttacct cttcatctgt aagaaggatt tttagagttg gcagcagagc 360
aacagtcagc tctgttgcct cactaaaaga gatctttgtt tgaatctgtg acctgtccaa 420 2021200253
gtgtacctcg cttctcaccc actgacctct ccacaacagt gagctggttg gcgggatgct 480
aatgtttcta gttattacgt gtaaccaaac ttaaagagta cagataaatc atttagcata 540
attaaagttt tactgtcatg ttattggctg ttaatatgat tgctgttgta agtatgtgtt 600
gatcactaac aatttaatta attaaatcaa tcattaaatt aagtttgttt ggaaaaagag 660
ggaaaactca tccactgacc acatggttct aggttcaatt ccttggagtt aaagggctaa 720
tcccagagcc atttaccaaa ataataaata aatatttaaa taagacgtgc atgcgactgc 780
ggtcaccttt aaagcacaaa gttttttttg agcagtgagg tgaactcggg tggatctgtg 840
tgttcacaga gaaaaccttc tgtaagcaga ttaaggagtc agaagttctt aatcctgaaa 900
gtttagaaaa atcccagcag cataatcttt gctgtaagtg gtttacgagc gtatataaga 960
ggctgacaca gcggcagcgg caaagagctc agggtcaca 999
<210> 30 <211> 626 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 30 aaatcaaaag tcctcaacct ggttggaaga atattggcac tgaatggtat caataaggtt 60
gctagagagg gttagaggtg cacaatgtgc ttccataaca ttttatactt ctccaatctt 120
agcactaatc aaacatggtt gaatactttg tttactataa ctcttacaga gttataagat 180
ctgtgaagac agggacaggg acaataccca tctctgtctg gttcataggt ggtatgtaat 240
agatattttt aaaaataagt gagttaatga atgagggtga gaatggaggc acagaggtat 300
tagggggagg tgggccccag agaatggtgc caaggtccag tggggtgact gggatcagct 360
caggcctgac gctggccact cccacctagc tcctttcttt ctaatctgtt ctcattctcc 420
ttgggaagga ttgaggtctc tggaaaacag ccaaacaact gttatgggaa cagcaagccc 480
aaataaagcc aagcatcagg gggatctgag agctgaaagc aacttctgtt ccccctccct 540 2021200253
cagctgaagg ggtggggaag ggctcccaaa gccataactc cttttaaggg atttagaagg 600
cataaaaagg cccctggctg agaact 626
<210> 31 <211> 173 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 31 actcacgggg atttccaagt ctccacccca ttgacgtcaa tgggagtttg ttttggcacc 60
aaaatcaacg ggactttcca aaatgtcgta ataaccccgc cccgttgacg caaatgggcg 120
gtaggcgtgt acggtgggag gtctatataa gcagagctcg tttagtgaac cgt 173
<210> 32 <211> 113 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 32 aaaatcaacg ggactttcca aaatgtcgta ataaccccgc cccgttgacg caaatgggcg 60
gtaggcgtgt acggtgggag gtctatataa gcagagctcg tttagtgaac cgt 113
<210> 33
<211> 21 Jan 2021
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 33 gtaatacgac tcactatagg g 21 2021200253
<210> 34 <211> 19 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 34 taatacgact cactatagg 19
<210> 35 <211> 67 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 35 ccgattaatc ataaatatga aaaataattg ttgcatcacc cgccaatgcg tggcttaatg 60
cacatca 67
<210> 36 <211> 19 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 36 Jan 2021
attaaccctc actaaaggg 19
<210> 37 <211> 87 <212> DNA <213> Artificial Sequence
<220> 2021200253
<223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 37 ctagacaagg tcgaacgagg ggcatgaccc ggtgcggggc ttcttgcact cggcataggc 60
gagtgctaag aataacgttg gcactcg 87
<210> 38 <211> 1478 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 38 tattaggcga agaggcatct agtagtagtg gcagtggtga gaacgtgggc gctgctatag 60
tgaacaatct ccagtcgatg gttaagaaga agagtgacaa accagcagtg aatgacttgt 120
ctgggtccgt gaggaaaaga aagaagcccg acacaaagga cagtaacgtc aagaaaccca 180
agaaataggg gggacctgtt tagatgtata ggaataaaaa ctccgagatg atctcaatgt 240
gtaatggagt tgtaatattg caaaggggga aaatcaagac tcaaacgtgt gtatgagtga 300
gcgtacgtat atctccgaga gtagtatgac ataatgatga ctgtgaatca tcgtaatctc 360
acacaaaaac cccattgtcg gccatatacc acaccaagca acaccacata tcccccggaa 420
aaaaaaacgt gaaaaaaaga aacaatcaaa actacaacct actccttgat cacacagtca 480
ttgatcaagt tacagttcct gctagggaat gaccaaggta caaatcagca ccttaatggt 540
tagcacgctc tcttactctc tctcacagtc ttccggcccc tattcaaaat tctgcacttc 600 catttgaccc cagggttggg aaacagggcc acaaaagaaa aacccgacgt gaatgaaaaa 660 Jan 2021 actaagaaaa gaaaaaaaat tatcacacca gaaatttacc taattgggta attcccatcg 720 gtgtttttcc tggattgtcg cacgcacgca tgctgaaaaa agtgttcgag ttttgctttt 780 gcctcggagt ttcacgcaag tttttcgatc tcggaaccgg agggcggtcg ccttgttgtt 840 tgtgatgtcg tgctttgggt gttctaatgt gctgttattg tgctcttttt ttttcttctt 900 2021200253 tttttggtga tcatatgata ttgctcggta gattactttc gtgtgtaggt attcttttag 960 acgtttggtt attgggtaga tatgagagag agagagtggg tgggggagga gttggttgta 1020 ggagggaccc ctgggaggaa gtgtagttga gttttccctg acgaatgaaa atacgttttt 1080 gagaagataa tacaggaaag gtgtgtcggt gaatttccat ctatccgagg atatgagtgg 1140 aggagagtcg tgtgcgtgtg gttaatttag gatcagtgga acacacaaag taactaagac 1200 agagagacag agagaaaaat ctggggaaga gacaaagagt cagagtgtgt gagttattct 1260 gtattgtgaa atttttttgc ccaactacat aatattgctg aaactaattt tacttaaaaa 1320 gaaaagccaa caacgtcccc agtaaaactt ttctataaat atcagcagtt ttccctttcc 1380 tccattcctc ttcttgtctt ttttcttact ttcccttttt tatacctttt cattatcatc 1440 ctttataatt gtctaaccaa caactatata tctatcaa 1478
<210> 39 <211> 412 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 39 cccacacacc atagcttcaa aatgtttcta ctcctttttt actcttccag attttctcgg 60
actccgcgca tcgccgtacc acttcaaaac acccaagcac agcatactaa attttccctc 120
tttcttcctc tagggtgtcg ttaattaccc gtactaaagg tttggaaaag aaaaaagaga 180
ccgcctcgtt tctttttctt cgtcgaaaaa ggcaataaaa atttttatca cgtttctttt 240 tcttgaaatt ttttttttta gtttttttct ctttcagtga cctccattga tatttaagtt 300 Jan 2021 aataaacggt cttcaatttc tcaagtttca gtttcatttt tcttgttcta ttacaacttt 360 ttttacttct tgttcattag aaagaaagca tagcaatcta atctaagggg cg 412
<210> 40 <211> 28 <212> DNA 2021200253
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 40 ttgacaatta atcatcggct cgtataat 28
<210> 41 <211> 27 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 41 ttcaaatatg tatccgctca tgagaca 27
<210> 42 <211> 143 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 42 aactacccgt aggtgtagtt ggcgcaagcg tccgattagc tcaggtttaa gatgtcgaga 60
gtgagagtgg gcggcttaac tttctcagtt aggcataaaa ttacgtctta aatctcgtag 120
cgactaattt aataaaaatt gga 143
<210> 43 <211> 419 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide 2021200253
<400> 43 gcgcagcacc atggcctgaa ataacctctg aaagaggaac ttggttaggt accttctgag 60
gcggaaagaa ccagctgtgg aatgtgtgtc agttagggtg tggaaagtcc ccaggctccc 120
cagcaggcag aagtatgcaa agcatgcatc tcaattagtc agcaaccagg tgtggaaagt 180
ccccaggctc cccagcaggc agaagtatgc aaagcatgca tctcaattag tcagcaacca 240
tagtcccgcc cctaactccg cccatcccgc ccctaactcc gcccagttcc gcccattctc 300
cgccccatgg ctgactaatt ttttttattt atgcagaggc cgaggccgcc tcggcctctg 360
agctattcca gaagtagtga ggaggctttt ttggaggcct aggcttttgc aaaaagctt 419
<210> 44 <211> 28 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 44 gacgcttttt atcgcaactc tctactgt 28
<210> 45 <211> 29 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 45 catgacaaaa acgcgtaaca aaagtgtct 29 Jan 2021
<210> 46 <211> 1904 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic 2021200253
polynucleotide
<400> 46 agccgaattc ctcctcattc ttctccaaac ctttattgag tacctactgt gtgctggaat 60
aagacaggca gggccatgcc ctcatgaagc tgacaatcct attggtgtga ccatccccag 120
gtgtgtccca ggtgtgttgc aggtgtgtcc gaggtatgcc ccagctgtcc caggtgtgcc 180
ccagctgtct cagatgtgcc ccagctgtcc caggtgtgtc acagctgcat tgcaggtgtg 240
ccccagttgc attccatgtg tgctccaagt gtgtaccagc tgtcccaggt gtgtctcagg 300
tgtgccccag ctgtatccca ggtgtgcctc agctgtctta ggtgtgtctc aggtgcatcc 360
caggtgtgtc tcagatgtgc cccagctgtc ccaggtgtgc cccagctgtc ccaggtgtgc 420
cccagctgtc tccagtgtgt cccagctgtg ccccaggtgt gtgtcctagg tgtgcctcag 480
ctgtctcagg tgtgccccag gcatatccca ggtgtgcccc agctgtccca ggtgtgtcct 540
acgtgtgcac cagctgtatc ccaggtgtgc cccaggtgtg tctcagatgg gtcccaagtg 600
ttccccaact gcatttcagg tgtctcaggt gtgcccaagc tgtcccaggt gtgtccaaga 660
tgtgccccag gtgtgtctca ggtgggtctc aagtgcccca gctgcatttc aggtgtctca 720
ggtgtgcccc ccagtgcatc ccaggtgtgt cccaggtgtg ccccaggtgc atcccaggtg 780
tgtcccaggt gtgccccagc tgtctcaggt gtctcaggtg tgccccaggc atatcccagg 840
tgtgcctcag ctctcccagg tgtgtcctac atgtgcacca gctgtatctc aggtgtgtct 900
caggtgtgcc ccagatgtgc ccccggtgtg tctcaggtgg gtcccaagtg ttccccagct 960
gcatttcaag tgtctcaggt gtgccccagg tgtgcccccg ctgtcccagg tgtgtccaag 1020
atgtacccca ggtgtgtccc agctgtccca agtgtgtctc aggtgtgccc caggtgtgtt 1080 ccaggtgttc cccagctgtc ccagctgtcc caggtctcag gtgtgcccca ggtgtgttcc 1140 Jan 2021 aggtgttcac cagctgtccc agctgtccca ggtctcaggt gtgccccagg tatgttgcag 1200 gtgttcccca gctgtcccag ctgtcccagg tgtgtcccag gtgttcccca ggtgtgtccc 1260 agctgtccca ggtgtgtccc agatgtgccc caggtgtacc ccaggtgttt ctcaggtgga 1320 ttccaggtgt gtcccaggtg agccccagct gtattccata tgcgtccctc tgagtggggc 1380 2021200253 cttggtttga tgtagctccg gggatcttct gctccctggt cctggtgtca ccagcaactg 1440 cctcttgaca atcctgcctt gcctgcaaac cccaggtgag aagaagacaa atgactggga 1500 actgacccct cagtaagcgc tggtggtctc acctacagac ccccaggaag ctggtcactg 1560 tgggcttctt ttcctctcta aattcctatt atcaggtggt tttctttctc atttgctatt 1620 ttcttaaaaa taaaaatagg gaaaaacagc ctttgtaaat tacggtttct tccggctcca 1680 tcctctccgt caggcccaca tcccaaggaa acagcaggct tgagcctggc tgctgaagcc 1740 aggggctgga tggagcagct cagaacagag ctttgagtgc ctctccagcc aggggcccca 1800 gaagcctggt ggttgtttgt ccttctcagg ggaaaagtga ggcggcccct tggaggaagg 1860 ggccgggcag aatgatctaa tcggattcca agcagctcag ggga 1904
<210> 47 <211> 352 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 47 ctctgagctg cttccctact cacactctgt ccacaacccc attttcctga tcatgtagta 60
gaaagaaatg gaacacaatc tttgtaaata agcccttgta aacaagcaag agctacagtg 120
cttccacaag ccctactgca agccaggaat gggaacagtg gtgtgtgtgc agcaaatgcc 180
ctgagcaccc ctgtggattg gactcagaaa catggaagtg agggtaggag gggatgatct 240
aagtcctggg cccaattaag agatcagatg gtgaagggtt tgggggcctt taaggtaagg 300 aggcctgggc tgatcctgca ggctgatata aagtcctgta accccatagg ca 352 Jan 2021
<210> 48 <211> 133 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic 2021200253
polynucleotide
<400> 48 gtaagtatca aggttacaag acaggtttaa ggagaccaat agaaactggg cttgtcgaga 60
cagagaagac tcttgcgttt ctgataggca cctattggtc ttactgacat ccactttgcc 120
tttctctcca cag 133
<210> 49 <211> 221 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 49 agacatgata agatacattg atgagtttgg acaaaccaca actagaatgc agtgaaaaaa 60
atgctttatt tgtgaaattt gtgatgctat tgctttattt gtaaccatta taagctgcaa 120
taaacaagtt aacaacaaca attgcattca ttttatgttt caggttcagg gggagatgtg 180
ggaggttttt taaagcaagt aaaacctcta caaatgtggt a 221
<210> 50 <211> 222 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 50 cagacatgat aagatacatt gatgagtttg gacaaaccac aactagaatg cagtgaaaaa 60 Jan 2021 aatgctttat ttgtgaaatt tgtgatgcta ttgctttatt tgtaaccatt ataagctgca 120 ataaacaagt taacaacaac aattgcattc attttatgtt tcaggttcag ggggagatgt 180 gggaggtttt ttaaagcaag taaaacctct acaaatgtgg ta 222
<210> 51 2021200253
<211> 239 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 51 ggccgcttcg agcagacatg ataagataca ttgatgagtt tggacaaacc acaactagaa 60
tgcagtgaaa aaaatgcttt atttgtgaaa tttgtgatgc tattgcttta tttgtaacca 120
ttataagctg caataaacaa gttaacaaca acaattgcat tcattttatg tttcaggttc 180
agggggagat gtgggaggtt ttttaaagca agtaaaacct ctacaaatgt ggtaaaatc 239
<210> 52 <211> 222 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 52 taatcagcat accacatttg tagaggtttt acttgcttta aaaaacctcc cacacctccc 60
cctgaacctg aaacataaaa tgaatgcaat tgttgttgtt aacttgttta ttgcagctta 120
taatggttac aaataaagca atagcatcac aaatttcaca aataaagcat ttttttcact 180
gcattctagt tgtggtttgt ccaaactcat caatgtatct ta 222
<210> 53 <211> 142
<212> DNA Jan 2021
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 53 aacttgttta ttgcagctta taatggttac aaataaagca atagcatcac aaatttcaca 60 2021200253
aataaagcat ttttttcact gcattctagt tgtggtttgt ccaaactcat caatgtatct 120
tatcacgtct ggtcaggtgg ca 142
<210> 54 <211> 132 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 54 aacttgttta ttgcagctta taatggttac aaataaagca atagcatcac aaatttcaca 60
aataaagcat ttttttcact gcattctagt tgtggtttgt ccaaactcat caatgtatct 120
tatcacgtct gg 132
<210> 55 <211> 49 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 55 aataaaatat ctttattttc attacatctg tgtgttggtt ttttgtgtg 49
<210> 56 <211> 341 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 56 ctgcgcgctc gctcgctcac tgaggccgcc cgggcaaagc ccgggcgtcg ggcgaccttt 60
ggtcgcccgg cctcagtgag cgagcgagcg cgcagagagg gagtggccaa ctccatcact 120 2021200253
aggggttcct tgtagttaat gattaacccg ccatgctact tatctacgcg tagataagta 180
gcatggcggg ttaatcatta actacaagga acccctagtg atggagttgg ccactccctc 240
tctgcgcgct cgctcgctca ctgaggccgg gcgaccaaag gtcgcccgac gcccgggctt 300
tgcccgggcg gcctcagtga gcgagcgagc gcgcagcctt a 341
<210> 57 <211> 344 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 57 aggctgcgcg ctcgctcgct cactgaggcc gcccgggcaa agcccgggcg tcgggcgacc 60
tttggtcgcc cggcctcagt gagcgagcga gcgcgcagag agggagtggc caactccatc 120
actaggggtt ccttgtagtt aatgattaac ccgccatgct acttatctac gcgtagataa 180
gtagcatggc gggttaatca ttaactacaa ggaaccccta gtgatggagt tggccactcc 240
ctctctgcgc gctcgctcgc tcactgaggc cgggcgacca aaggtcgccc gacgcccggg 300
ctttgcccgg gcggcctcag tgagcgagcg agcgcgcagc ctta 344
<210> 58 <211> 128 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide Jan 2021
<400> 58 aggaacccct agtgatggag ttggccactc cctctctgcg cgctcgctcg ctcactgagg 60
ccgggcgacc aaaggtcgcc cgacgcccgg gctttgcccg ggcggcctca gtgagcgagc 120
gagcgcgc 128 2021200253
<210> 59 <211> 130 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 59 aggaacccct agtgatggag ttggccactc cctctctgcg cgctcgctcg ctcactgagg 60
ccgggcgacc aaaggtcgcc cgacgcccgg gctttgcccg ggcggcctca gtgagcgagc 120
gagcgcgcag 130
<210> 60 <211> 45 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 60 ttatgaagat ccctcgacct gcagcccaag cttggcgtaa tcatg 45
<210> 61 <211> 27 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 61 Jan 2021
gataaggatc ttcctagagc atggcta 27
<210> 62 <211> 273 <212> DNA <213> Artificial Sequence
<220> 2021200253
<223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 62 atgtctgccc gtatttcgcg taaggaaatc cattatgtac tatttaaaaa acacaaactt 60
ttggatgttc ggtttattct ttttctttta cttttttatc atgggagcct acttcccgtt 120
tttcccgatt tggctacatg acatcaacca tatcagcaaa agtgatacgg gtattatttt 180
tgccgctatt tctctgttct cgctattatt ccaaccgctg tttggtctgc tttctgacaa 240
actcggcctc gactctaggc ggccgcgggg atc 273
<210> 63 <211> 141 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 63 ggaggggtgg agtcgtgacg tgaattacgt catagggtta gggaggtcct gtattagagg 60
tcacgtgagt gttttgcgac attttgcgac accatgtggt cacgctgggt atttaagccc 120
gagtgagcac gcagggtctc c 141
<210> 64 <211> 60 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide Jan 2021
<400> 64 ggatccactc gagtggagct cgcgactagt cgattcgaat tcgatatcaa gcttatcgat 60
<210> 65 <211> 98 <212> DNA <213> Artificial Sequence 2021200253
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 65 gcctgtacgg aagtgttact tctgctctaa aagctgcgga attgtacccg cggccgcaat 60
tcccggggat cgaaagagcc tgctaaagca aaaaagaa 98
<210> 66 <211> 48 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 66 ccgaacccga attctgcaga tatccagcac agtggcggcc gcttcgag 48
<210> 67 <211> 53 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 67 tagtttccat ggctacgtag ataagtagca tggcgggtta atcattaact aca 53
<210> 68 <211> 64
<212> DNA Jan 2021
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 68 tgtagttaat gattaacccg ccatgctact tatctacgta gccatgctcg atctgaattc 60 2021200253
ggta 64
<210> 69 <211> 14 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 69 ggccgcgggg atcc 14
<210> 70 <211> 11 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 70 ggttcgaaca g 11
<210> 71 <211> 120 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 71 catgttcatg ccttcttctt tttcctacag ctcctgggca acgtgctggt tattgtgctg 60 Jan 2021 tctcatcatt ttggcaaaga attctgcagt cgacggtacc gcgggcccgg gatccaccgg 120
<210> 72 <211> 30 <212> DNA <213> Artificial Sequence 2021200253
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 72 gcggccgcac gcgtgttact agttattaat 30
<210> 73 <211> 115 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 73 cactagaagc tttattgcgg tagtttatca cagttaaatt gctaacgcag tcagtgcttc 60
tgacacaaca gtctcgaact taagctgcag aagttggtcg tgaggcactg ggcag 115
<210> 74 <211> 68 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 74 gcctggagac gccatccacg ctgttttgac ctccatagaa gacaccggga ccgatccagc 60
ctccggac 68
<210> 75
<211> 133 Jan 2021
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 75 gtgtccactc ccagttcaat tacagctctt aaggctagag tacttaatac gactcactat 60 2021200253
aggctagcct cgagaattca cgcgtggtac cgagctcgga tccactagtc cagtgtggtg 120
gaattcgggc ggg 133
<210> 76 <211> 64 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 76 tgtatttaga aaaataaaca aataggggtt ccgcgcacat ttccccgaaa agtgccacct 60
ggtc 64
<210> 77 <211> 26 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 77 tagccatgct ctaggaagat cgtacc 26
<210> 78 <211> 26 <212> DNA <213> Artificial Sequence
<220> Jan 2021
<223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 78 gaattcgagc ttgcatgcct gcaggt 26
<210> 79 <211> 56 2021200253
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 79 gtgtccactc ccagttcaat tacagctctt aaggctagag tacttctagc ctcgag 56
<210> 80 <211> 67 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 80 aaatcgataa ggatcctaga gcatggctac gtagataagt agcatggcgg gttaatcatt 60
aactaca 67
<210> 81 <211> 13 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 81 ggcccgggat cca 13
<210> 82 Jan 2021
<211> 57 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 82 2021200253
gttgaattcg atatcggatc catcgatacc gtcgacctcg agggggggcc cggtacc 57
<210> 83 <211> 44 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 83 caattcgccc tatagtgagt cgtattacgc gcgcagcggc cgac 44
<210> 84 <211> 56 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 84 tgtagttaat gattaacccg ccatgctact tatctacgta gccatgctct agatct 56
<210> 85 <211> 18 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 85 agcggccgca ctcctcag 18 Jan 2021
<210> 86 <211> 21 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic 2021200253
oligonucleotide
<400> 86 atcgataccg tcgacccggg c 21
<210> 87 <211> 122 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 87 cagatcgcct ggagacgcca tccacgctgt tttgacctcc atagaagaca ccgggaccga 60
tccagcctcc ggactctaga ggatccggta ctcgaggaac tgaaaaacca gaaagttaac 120
tg 122
<210> 88 <211> 28 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 88 ccggaccacg tgcggaccga gcggccgc 28
<210> 89 <211> 115 <212> DNA
<213> Artificial Sequence Jan 2021
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 89 gtgtccactc ccagttcaat tacagctctt aaggctagag tacttctagc ctcgagaatt 60
cacgcgtggt accgagctcg gatccactag tccagtgtgg tggaattcgg gcggg 115 2021200253
<210> 90 <211> 67 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 90 ttatttgtga aatttgtgat gctattgctt tatttgtaac cattataagc tgcaataaac 60
aagttaa 67
<210> 91 <211> 20 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 91 taataataac cgggcaggcc 20
<210> 92 <211> 124 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 92 Jan 2021
agccgcgaga cgggcgctca gggcgcgggg ccggcggcgg cgaacgagag gacggactct 60
ggcggccggg tcgttggccg cggggagcgc gggcaccggg cgagcaggcc gcgtcgcgct 120
cacc 124
<210> 93 <211> 194 2021200253
<212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 93 ggggctcggg tgcagcggcc agcgggcctg gcggcgagga ttacccgggg aagtggttgt 60
ctcctggctg gagccgcgag acgggcgctc agggcgcggg gccggcggcg gcgaacgaga 120
ggacggactc tggcggccgg gtcgttggcc gggggagcgc gggcaccggg cgagcaggcc 180
gcgtcgcgct cacc 194
<210> 94 <211> 20 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 94 aggactcatt aaaaagtaac 20
<210> 95 <211> 197 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 95 Jan 2021
ggggctcggg tgcagcggcc agcgggcgcc tggcggcgag gattacccgg ggaagtggtt 60
gtctcctggc tggagccgcg agacgggcgc tcagggcgcg gggccggcgg cggcgaacga 120
gaggacggac tctggcggcc gggtcgttgg ccgcggggag cgcgggcacc gggcgagcag 180
gccgcgtcgc gctcacc 197 2021200253
<210> 96 <211> 1000 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 96 gggcgggtgc atcaatgcgg ccgaaaaaga cacggacacg ctcccctggg acctgagctg 60
gttcgcagtc ttcccaaagg tgccaagcaa gcgtcagttc ccctcaggcg ctccaggttc 120
agtgccttgt gccgagggtc tccggtgcct tcctagactt ctcgggacag tctgaagggg 180
tcaggagcgg cgggacagcg cgggaagagc aggcaagggg agacagccgg actgcgcctc 240
agtcctccgt gccaagaaca ccgtcgcgga ggcgcggcca gcttcccttg gatcggactt 300
tccgccccta gggccaggcg gcggagcttc agccttgtcc cttccccagt ttcgggcggc 360
ccccagagct gagtaagccg ggtggaggga gtctgcaagg atttcctgag cgcgatgggc 420
aggaggaggg gcaagggcaa gagggcgcgg agcaaagacc ctgaacctgc cggggccgcg 480
ctcccgggcc cgcgtcgcca gcacctcccc acgcgcgctc ggccccgggc cacccgccct 540
cgtcggcccc cgcccctctc cgtagccgca gggaagcgag cctgggagga agaagagggt 600
aggtggggag gcggatgagg ggtgggggac cccttgacgt caccagaagg aggtgccggg 660
gtaggaagtg ggctggggaa aggttataaa tcgcccccgc cctcggctgc tcttcatcga 720
ggtccgcggg aggctcggag cgcgccaggc ggacactcct ctcggctcct ccccggcagc 780
ggcggcggct cggagcgggc tccggggctc gggtgcagcg gccagcgggc gcctggcggc 840
gaggattacc cggggaagtg gttgtctcct ggctggagcc gcgagacggg cgctcagggc 900
gcggggccgg cggcggcgaa cgagaggacg gactctggcg gccgggtcgt tggccgcggg 960
gagcgcgggc accgggcgag caggccgcgt cgcgctcacc 1000
<210> 97 <211> 71 <212> DNA <213> Artificial Sequence 2021200253
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 97 ttgcttgtta atcaataaac cgtttaattc gtttcagttg aactttggtc tctgcgtatt 60
tctttcttat c 71
<210> 98 <211> 34 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 98 attttgaagc gggaggtttg aacgcgcagc cgcc 34
<210> 99 <211> 12 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic oligonucleotide
<400> 99 ccggtcgcca cc 12
<210> 100 <211> 197
<212> DNA Jan 2021
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 100 ggggctcggg tgcagcggcc agcgggcgcc tggcggcgag gattacccgg ggaagtggtt 60 2021200253
gtctcctggc tggagccgcg agacgggcgc tcagggcgcg gggccggcgg cggcgaacga 120
gaggacggac tctggcggcc gggtctttgg ccgcggggag cgcgggcacc gggcgagcag 180
gccgcgtcgc gctcacc 197
<210> 101 <211> 382 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 101 ggggtggggg accccttgac gtcaccagaa ggaggtgccg gggtaggaag tgggctgggg 60
aaaggttata aatcgccccc gccctcggct gctcttcatc gaggtccgcg ggaggctcgg 120
agcgcgccag gcggacactc ctctcggctc ctccccggca gcggcggcgg ctcggagcgg 180
gctccggggc tcgggtgcag cggccagcgg gcgcctggcg gcgaggatta cccggggaag 240
tggttgtctc ctggctggag ccgcgagacg ggcgctcagg gcgcggggcc ggcggcggcg 300
aacgagagga cggactctgg cggccgggtc gttggccgcg gggagcgcgg gcaccgggcg 360
agcaggccgc gtcgcgctca cc 382
<210> 102 <211> 2064 <212> DNA <213> Homo sapiens
<400> 102 atggtcagct actgggacac cggggtcctg ctgtgcgcgc tgctcagctg tctgcttctc 60
acaggatcta gttcaggttc aaaattaaaa gatcctgaac tgagtttaaa aggcacccag 120
cacatcatgc aagcaggcca gacactgcat ctccaatgca ggggggaagc agcccataaa 180
tggtctttgc ctgaaatggt gagtaaggaa agcgaaaggc tgagcataac taaatctgcc 240
tgtggaagaa atggcaaaca attctgcagt actttaacct tgaacacagc tcaagcaaac 300
cacactggct tctacagctg caaatatcta gctgtaccta cttcaaagaa gaaggaaaca 360 2021200253
gaatctgcaa tctatatatt tattagtgat acaggtagac ctttcgtaga gatgtacagt 420
gaaatccccg aaattataca catgactgaa ggaagggagc tcgtcattcc ctgccgggtt 480
acgtcaccta acatcactgt tactttaaaa aagtttccac ttgacacttt gatccctgat 540
ggaaaacgca taatctggga cagtagaaag ggcttcatca tatcaaatgc aacgtacaaa 600
gaaatagggc ttctgacctg tgaagcaaca gtcaatgggc atttgtataa gacaaactat 660
ctcacacatc gacaaaccaa tacaatcata gatgtccaaa taagcacacc acgcccagtc 720
aaattactta gaggccatac tcttgtcctc aattgtactg ctaccactcc cttgaacacg 780
agagttcaaa tgacctggag ttaccctgat gaaaaaaata agagagcttc cgtaaggcga 840
cgaattgacc aaagcaattc ccatgccaac atattctaca gtgttcttac tattgacaaa 900
atgcagaaca aagacaaagg actttatact tgtcgtgtaa ggagtggacc atcattcaaa 960
tctgttaaca cctcagtgca tatatatgat aaagcattca tcactgtgaa acatcgaaaa 1020
cagcaggtgc ttgaaaccgt agctggcaag cggtcttacc ggctctctat gaaagtgaag 1080
gcatttccct cgccggaagt tgtatggtta aaagatgggt tacctgcgac tgagaaatct 1140
gctcgctatt tgactcgtgg ctactcgtta attatcaagg acgtaactga agaggatgca 1200
gggaattata caatcttgct gagcataaaa cagtcaaatg tgtttaaaaa cctcactgcc 1260
actctaattg tcaatgtgaa accccagatt tacgaaaagg ccgtgtcatc gtttccagac 1320
ccggctctct acccactggg cagcagacaa atcctgactt gtaccgcata tggtatccct 1380
caacctacaa tcaagtggtt ctggcacccc tgtaaccata atcattccga agcaaggtgt 1440
gacttttgtt ccaataatga agagtccttt atcctggatg ctgacagcaa catgggaaac 1500 agaattgaga gcatcactca gcgcatggca ataatagaag gaaagaataa gatggctagc 1560 Jan 2021 accttggttg tggctgactc tagaatttct ggaatctaca tttgcatagc ttccaataaa 1620 gttgggactg tgggaagaaa cataagcttt tatatcacag atgtgccaaa tgggtttcat 1680 gttaacttgg aaaaaatgcc gacggaagga gaggacctga aactgtcttg cacagttaac 1740 aagttcttat acagagacgt tacttggatt ttactgcgga cagttaataa cagaacaatg 1800 2021200253 cactacagta ttagcaagca aaaaatggcc atcactaagg agcactccat cactcttaat 1860 cttaccatca tgaatgtttc cctgcaagat tcaggcacct atgcctgcag agccaggaat 1920 gtatacacag gggaagaaat cctccagaag aaagaaatta caatcagagg tgagcactgc 1980 aacaaaaagg ctgttttctc tcggatctcc aaatttaaaa gcacaaggaa tgattgtacc 2040 acacaaagta atgtaaaaca ttaa 2064
<210> 103 <211> 1453 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 103 aagcttgggc tgcaggtcga tcgactctag aggatcgatc cccgggcgag ctcgaattcg 60
caaccaccat ggtcagctac tgggacaccg gggtcctgct gtgcgcgctg ctcagctgtc 120
tgcttctcac aggatctagt tccggaggta gacctttcgt agagatgtac agtgaaatcc 180
ccgaaattat acacatgact gaaggaaggg agctcgtcat tccctgccgg gttacgtcac 240
ctaacatcac tgttacttta aaaaagtttc cacttgacac tttgatccct gatggaaaac 300
gcataatctg ggacagtaga aagggcttca tcatatcaaa tgcaacgtac aaagaaatag 360
ggcttctgac ctgtgaagca acagtcaatg ggcatttgta taagacaaac tatctcacac 420
atcgacaaac caatacaatc atagatgtgg ttctgagtcc gtctcatgga attgaactat 480
ctgttggaga aaagcttgtc ttaaattgta cagcaagaac tgaactaaat gtggggattg 540 acttcaactg ggaataccct tcttcgaagc atcagcataa gaaacttgta aaccgagacc 600 Jan 2021 taaaaaccca gtctgggagt gagatgaaga aatttttgag caccttaact atagatggtg 660 taacccggag tgaccaagga ttgtacacct gtgcagcatc cagtgggctg atgaccaaga 720 agaacagcac atttgtcagg gtccatgaaa agggcccggg cgacaaaact cacacatgcc 780 caccgtgccc agcacctgaa ctcctggggg gaccgtcagt cttcctcttc cccccaaaac 840 2021200253 ccaaggacac cctcatgatc tcccggaccc ctgaggtcac atgcgtggtg gtggacgtga 900 gccacgaaga ccctgaggtc aagttcaact ggtacgtgga cggcgtggag gtgcataatg 960 ccaagacaaa gccgcgggag gagcagtaca acagcacgta ccgtgtggtc agcgtcctca 1020 ccgtcctgca ccaggactgg ctgaatggca aggagtacaa gtgcaaggtc tccaacaaag 1080 ccctcccagc ccccatcgag aaaaccatct ccaaagccaa agggcagccc cgagaaccac 1140 aggtgtacac cctgccccca tcccgggatg agctgaccaa gaaccaggtc agcctgacct 1200 gcctggtcaa aggcttctat cccagcgaca tcgccgtgga gtgggagagc aatgggcagc 1260 cggagaacaa ctacaagacc acgcctcccg tgctggactc cgacggctcc ttcttcctct 1320 atagcaagct caccgtggac aagagcaggt ggcagcaggg gaacgtcttc tcatgctccg 1380 tgatgcatga ggctctgcac aaccactaca cgcagaagag cctctccctg tctccgggta 1440 aatgagcggc cgc 1453
<210> 104 <211> 1377 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 104 atggtcagct actgggacac cggggtcctg ctgtgcgcgc tgctcagctg tctgcttctc 60
acaggatcta gttccggaag tgataccggt agacctttcg tagagatgta cagtgaaatc 120
cccgaaatta tacacatgac tgaaggaagg gagctcgtca ttccctgccg ggttacgtca 180 cctaacatca ctgttacttt aaaaaagttt ccacttgaca ctttgatccc tgatggaaaa 240 Jan 2021 cgcataatct gggacagtag aaagggcttc atcatatcaa atgcaacgta caaagaaata 300 gggcttctga cctgtgaagc aacagtcaat gggcatttgt ataagacaaa ctatctcaca 360 catcgacaaa ccaatacaat catagatgtg gttctgagtc cgtctcatgg aattgaacta 420 tctgttggag aaaagcttgt cttaaattgt acagcaagaa ctgaactaaa tgtggggatt 480 2021200253 gacttcaact gggaataccc ttcttcgaag catcagcata agaaacttgt aaaccgagac 540 ctaaaaaccc agtctgggag tgagatgaag aaatttttga gcaccttaac tatagatggt 600 gtaacccgga gtgaccaagg attgtacacc tgtgcagcat ccagtgggct gatgaccaag 660 aagaacagca catttgtcag ggtccatgaa aaggacaaaa ctcacacatg cccaccgtgc 720 ccagcacctg aactcctggg gggaccgtca gtcttcctct tccccccaaa acccaaggac 780 accctcatga tctcccggac ccctgaggtc acatgcgtgg tggtggacgt gagccacgaa 840 gaccctgagg tcaagttcaa ctggtacgtg gacggcgtgg aggtgcataa tgccaagaca 900 aagccgcggg aggagcagta caacagcacg taccgtgtgg tcagcgtcct caccgtcctg 960 caccaggact ggctgaatgg caaggagtac aagtgcaagg tctccaacaa agccctccca 1020 gcccccatcg agaaaaccat ctccaaagcc aaagggcagc cccgagaacc acaggtgtac 1080 accctgcccc catcccggga tgagctgacc aagaaccagg tcagcctgac ctgcctggtc 1140 aaaggcttct atcccagcga catcgccgtg gagtgggaga gcaatgggca gccggagaac 1200 aactacaaga ccacgcctcc cgtgctggac tccgacggct ccttcttcct ctacagcaag 1260 ctcaccgtgg acaagagcag gtggcagcag gggaacgtct tctcatgctc cgtgatgcat 1320 gaggctctgc acaaccacta cacgcagaag agcctctccc tgtctccggg taaatga 1377
<210> 105 <211> 1444 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 105 aagcttgggc tgcaggtcga tcgactctag aggatcgatc cccgggcgag ctcgaattcg 60
caaccaccat ggtcagctac tgggacaccg gggtcctgct gtgcgcgctg ctcagctgtc 120
tgcttctcac aggatctagt tccggaggta gacctttcgt agagatgtac agtgaaatcc 180
ccgaaattat acacatgact gaaggaaggg agctcgtcat tccctgccgg gttacgtcac 240 2021200253
ctaacatcac tgttacttta aaaaagtttc cacttgacac tttgatccct gatggaaaac 300
gcataatctg ggacagtaga aagggcttca tcatatcaaa tgcaacgtac aaagaaatag 360
ggcttctgac ctgtgaagca acagtcaatg ggcatttgta taagacaaac tatctcacac 420
atcgacaaac caatacaatc atagatatcc agctgttgcc caggaagtcg ctggagctgc 480
tggtagggga gaagctggtc ctcaactgca ccgtgtgggc tgagtttaac tcaggtgtca 540
cctttgactg ggactaccca gggaagcagg cagagcgggg taagtgggtg cccgagcgac 600
gctcccaaca gacccacaca gaactctcca gcatcctgac catccacaac gtcagccagc 660
acgacctggg ctcgtatgtg tgcaaggcca acaacggcat ccagcgattt cgggagagca 720
ccgaggtcat tgtgcatgaa aatggcccgg gcgacaaaac tcacacatgc ccaccgtgcc 780
cagcacctga actcctgggg ggaccgtcag tcttcctctt ccccccaaaa cccaaggaca 840
ccctcatgat ctcccggacc cctgaggtca catgcgtggt ggtggacgtg agccacgaag 900
accctgaggt caagttcaac tggtacgtgg acggcgtgga ggtgcataat gccaagacaa 960
agccgcggga ggagcagtac aacagcacgt accgtgtggt cagcgtcctc accgtcctgc 1020
accaggactg gctgaatggc aaggagtaca agtgcaaggt ctccaacaaa gccctcccag 1080
cccccatcga gaaaaccatc tccaaagcca aagggcagcc ccgagaacca caggtgtaca 1140
ccctgccccc atcccgggat gagctgacca agaaccaggt cagcctgacc tgcctggtca 1200
aaggcttcta tcccagcgac atcgccgtgg agtgggagag caatgggcag ccggagaaca 1260
actacaagac cacgcctccc gtgctggact ccgacggctc cttcttcctc tatagcaagc 1320
tcaccgtgga caagagcagg tggcagcagg ggaacgtctt ctcatgctcc gtgatgcatg 1380
aggctctgca caaccactac acgcagaaga gcctctccct gtctccgggt aaatgagcgg 1440
ccgc 1444
<210> 106 <211> 214 <212> PRT <213> Artificial Sequence
<220> 2021200253
<223> Description of Artificial Sequence: Synthetic polypeptide
<400> 106 Asp Ile Gln Leu Thr Gln Ser Pro Ser Ser Leu Ser Ala Ser Val Gly 1 5 10 15
Asp Arg Val Thr Ile Thr Cys Ser Ala Ser Gln Asp Ile Ser Asn Tyr 20 25 30
Leu Asn Trp Tyr Gln Gln Lys Pro Gly Lys Ala Pro Lys Val Leu Ile 35 40 45
Tyr Phe Thr Ser Ser Leu His Ser Gly Val Pro Ser Arg Phe Ser Gly 50 55 60
Ser Gly Ser Gly Thr Asp Phe Thr Leu Thr Ile Ser Ser Leu Gln Pro 65 70 75 80
Glu Asp Phe Ala Thr Tyr Tyr Cys Gln Gln Tyr Ser Thr Val Pro Trp 85 90 95
Thr Phe Gly Gln Gly Thr Lys Val Glu Ile Lys Arg Thr Val Ala Ala 100 105 110
Pro Ser Val Phe Ile Phe Pro Pro Ser Asp Glu Gln Leu Lys Ser Gly 115 120 125
Thr Ala Ser Val Val Cys Leu Leu Asn Asn Phe Tyr Pro Arg Glu Ala 130 135 140
Lys Val Gln Trp Lys Val Asp Asn Ala Leu Gln Ser Gly Asn Ser Gln 145 150 155 160
Glu Ser Val Thr Glu Gln Asp Ser Lys Asp Ser Thr Tyr Ser Leu Ser 165 170 175
Ser Thr Leu Thr Leu Ser Lys Ala Asp Tyr Glu Lys His Lys Val Tyr 2021200253
180 185 190
Ala Cys Glu Val Thr His Gln Gly Leu Ser Ser Pro Val Thr Lys Ser 195 200 205
Phe Asn Arg Gly Glu Cys 210
<210> 107 <211> 642 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 107 gatattcagc tgacccagag cccgagcagc ctgagcgcga gcgtgggcga tcgcgtgacc 60
attacctgca gcgcgagcca ggatattagc aactatctga actggtatca gcagaaaccg 120
ggcaaagcgc cgaaagtgct gatttatttt accagcagcc tgcatagcgg cgtgccgagc 180
cgctttagcg gcagcggcag cggcaccgat tttaccctga ccattagcag cctgcagccg 240
gaagattttg cgacctatta ttgccagcag tatagcaccg tgccgtggac ctttggccag 300
ggcaccaaag tggaaattaa acgcaccgtg gcggcgccga gcgtgtttat ttttccgccg 360
agcgatgaac agctgaaaag cggcaccgcg agcgtggtgt gcctgctgaa caacttttat 420
ccgcgcgaag cgaaagtgca gtggaaagtg gataacgcgc tgcagagcgg caacagccag 480
gaaagcgtga ccgaacagga tagcaaagat agcacctata gcctgagcag caccctgacc 540 ctgagcaaag cggattatga aaaacataaa gtgtatgcgt gcgaagtgac ccatcagggc 600 Jan 2021 ctgagcagcc cggtgaccaa aagctttaac cgcggcgaat gc 642
<210> 108 <211> 642 <212> DNA <213> Artificial Sequence 2021200253
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 108 gatattcaat tgactcaatc tccttcttct ttgtctgctt ctgttggtga tcgtgttact 60
attacttgtt ctgcttctca agatatttct aattatttga attggtatca acaaaaacct 120
ggtaaagctc ctaaagtttt gatttatttt acttcttctt tgcattctgg tgttccttct 180
cgtttttctg gttctggttc tggtactgat tttactttga ctatttcttc tttgcaacct 240
gaagattttg ctacttatta ttgtcaacaa tattctactg ttccttggac ttttggtcaa 300
ggtactaaag ttgaaattaa acgtactgtt gctgctcctt ctgtttttat ttttcctcct 360
tctgatgaac aattgaaatc tggtactgct tctgttgttt gtttgttgaa taatttttat 420
cctcgtgaag ctaaagttca atggaaagtt gataatgctt tgcaatctgg taattctcaa 480
gaatctgtta ctgaacaaga ttctaaagat tctacttatt ctttgtcttc tactttgact 540
ttgtctaaag ctgattatga aaaacataaa gtttatgctt gtgaagttac tcatcaaggt 600
ttgtcttctc ctgttactaa atcttttaat cgtggtgaat gt 642
<210> 109 <211> 450 <212> PRT <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polypeptide
<400> 109 Met Val Ser Tyr Trp Asp Thr Gly Val Leu Leu Cys Ala Leu Leu Ser
1 5 10 15 Jan 2021
Cys Leu Leu Leu Thr Gly Ser Ser Ser Gly Ser Lys Leu Lys Asp Pro 20 25 30
Glu Leu Ser Leu Lys Gly Thr Gln His Ile Ala Gly Gln Thr Leu His 35 40 45 2021200253
Leu Gln Cys Arg Gly Glu Ala Ala Met Gln His Lys Trp Ser Leu Pro 50 55 60
Glu Met Val Ser Lys Glu Ser Glu Arg Leu Ser Ile Thr Lys Ser Ala 65 70 75 80
Cys Gly Arg Asn Gly Lys Gln Phe Cys Ser Thr Leu Thr Leu Asn Thr 85 90 95
Ala Gln Ala Asn His Thr Gly Phe Tyr Ser Cys Lys Tyr Leu Ala Val 100 105 110
Pro Thr Ser Lys Lys Lys Glu Thr Glu Ser Ala Ile Tyr Ile Phe Ile 115 120 125
Ser Asp Thr Gly Arg Pro Phe Val Glu Met Tyr Ser Glu Ile Pro Glu 130 135 140
Ile Ile His Met Thr Glu Gly Arg Glu Leu Val Ile Pro Cys Arg Val 145 150 155 160
Thr Ser Pro Asn Ile Thr Val Thr Leu Lys Lys Phe Pro Leu Asp Thr 165 170 175
Leu Ile Pro Asp Gly Lys Arg Ile Ile Trp Asp Ser Arg Lys Gly Phe 180 185 190
Ile Ile Ser Asn Ala Thr Tyr Lys Glu Ile Gly Leu Leu Thr Cys Glu 195 200 205
Ala Thr Val Asn Gly His Leu Tyr Lys Thr Asn Tyr Leu Thr His Arg 210 215 220
Gln Thr Asn Thr Ile Ile Asp Val Gln Ile Ser Thr Pro Arg Pro Val 225 230 235 240 2021200253
Lys Leu Leu Arg Gly His Thr Leu Val Leu Asn Cys Thr Ala Thr Thr 245 250 255
Pro Leu Asn Thr Arg Val Gln Met Thr Trp Ser Tyr Pro Asp Glu Lys 260 265 270
Asn Lys Arg Ala Ser Val Arg Arg Arg Ile Asp Gln Ser Asn Ser His 275 280 285
Ala Asn Ile Phe Tyr Ser Val Leu Thr Ile Asp Lys Met Gln Asn Lys 290 295 300
Asp Lys Gly Leu Tyr Thr Cys Arg Val Arg Ser Gly Pro Ser Phe Lys 305 310 315 320
Ser Val Asn Thr Ser Val His Ile Tyr Asp Lys Ala Phe Ile Thr Val 325 330 335
Lys His Arg Lys Gln Gln Val Leu Glu Thr Val Ala Gly Lys Arg Ser 340 345 350
Tyr Arg Leu Ser Met Lys Val Lys Ala Phe Pro Ser Pro Glu Val Val 355 360 365
Trp Leu Lys Asp Gly Leu Pro Ala Thr Glu Lys Ser Ala Arg Tyr Leu 370 375 380
Thr Arg Gly Tyr Ser Leu Ile Ile Lys Asp Val Thr Glu Glu Asp Ala 385 390 395 400
Gly Asn Tyr Thr Ile Leu Leu Ser Ile Lys Gln Ser Asn Val Phe Lys 405 410 415
Asn Leu Thr Ala Thr Leu Ile Val Asn Val Lys Pro Gln Ile Tyr Glu 420 425 430
Lys Ala Val Ser Ser Phe Pro Asp Pro Ala Leu Tyr Pro Leu Gly Ser 2021200253
435 440 445
Arg Gln 450
<210> 110 <211> 375 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 110 atggccaagt tgaccagtgc cgttccggtg ctcaccgcgc gcgacgtcgc cggagcggtc 60
gagttctgga ccgaccggct cgggttctcc cgggacttcg tggaggacga cttcgccggt 120
gtggtccggg acgacgtgac cctgttcatc agcgcggtcc aggaccaggt ggtgccggac 180
aacaccctgg cctgggtgtg ggtgcgcggc ctggacgagc tgtacgccga gtggtcggag 240
gtcgtgtcca cgaacttccg ggacgcctcc gggccggcca tgaccgagat cggcgagcag 300
ccgtgggggc gggagttcgc cctgcgcgac ccggccggca actgcgtgca cttcgtggcc 360
gaggagcagg actga 375
<210> 111 <211> 375 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide Jan 2021
<400> 111 atgtctaaat taacctctgc tgttccagtg ttaaccgccc gtgatgttgc cggtgcagtg 60
gaattttgga ctgaccgttt gggtttctca cgtgactttg tcgaagatga ttttgctggc 120
gttgtgcgtg atgacgtcac tttgttcatc tctgctgttc aggatcaggt cgtcccagac 180
aacactttgg cctgggtctg ggttcgtggt ttggacgaat tgtacgctga gtggagtgaa 240 2021200253
gttgtgtcta caaactttcg tgatgcatca ggtccagcta tgaccgaaat tggcgaacaa 300
ccttggggcc gtgagttcgc tttacgtgat ccagccggta attgcgtgca cttcgttgct 360
gaggagcaag attag 375
<210> 112 <211> 861 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 112 atgagtattc aacatttccg tgtcgccctt attccctttt ttgcggcatt ttgccttcct 60
gtttttgctc acccagaaac gctggtgaaa gtaaaagatg ctgaagatca gttgggtgca 120
cgagtgggtt acatcgaact ggatctcaac agcggtaaga tccttgagag ttttcgcccc 180
gaagaacgtt ttccaatgat gagcactttt aaagttctgc tatgtggcgc ggtattatcc 240
cgtattgacg ccgggcaaga gcaactcggt cgccgcatac actattctca gaatgacttg 300
gttgagtact caccagtcac agaaaagcat cttacggatg gcatgacagt aagagaatta 360
tgcagtgctg ccataaccat gagtgataac actgcggcca acttacttct gacaacgatc 420
ggaggaccga aggagctaac cgcttttttg cacaacatgg gggatcatgt aactcgcctt 480
gatcgttggg aaccggagct gaatgaagcc ataccaaacg acgagcgtga caccacgatg 540
cctgtagcaa tggcaacaac gttgcgcaaa ctattaactg gcgaactact tactctagct 600
tcccggcaac aattaataga ctggatggag gcggataaag ttgcaggacc acttctgcgc 660
tcggcccttc cggctggctg gtttattgct gataaatctg gagccggtga gcgtgggtct 720
cgcggtatca ttgcagcact ggggccagat ggtaagccct cccgtatcgt agttatctac 780
acgacgggga gtcaggcaac tatggatgaa cgaaatagac agatcgctga gataggtgcc 840
tcactgatta agcattggta a 861 2021200253
<210> 113 <211> 795 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 113 atgattgaac aagatggatt gcacgcaggt tctccggccg cttgggtgga gaggctattc 60
ggctatgact gggcacaaca gacaatcggc tgctctgatg ccgccgtgtt ccggctgtca 120
gcgcaggggc gcccggttct ttttgtcaag accgacctgt ccggtgccct gaatgaactg 180
caggacgagg cagcgcggct atcgtggctg gccacgacgg gcgttccttg cgcagctgtg 240
ctcgacgttg tcactgaagc gggaagggac tggctgctat tgggcgaagt gccggggcag 300
gatctcctgt catctcacct tgctcctgcc gagaaagtat ccatcatggc tgatgcaatg 360
cggcggctgc atacgcttga tccggctacc tgcccattcg accaccaagc gaaacatcgc 420
atcgagcgag cacgtactcg gatggaagcc ggtcttgtcg atcaggatga tctggacgaa 480
gagcatcagg ggctcgcgcc agccgaactg ttcgccaggc tcaaggcgcg catgcccgac 540
ggcgaggatc tcgtcgtgac ccatggcgat gcctgcttgc cgaatatcat ggtggaaaat 600
ggccgctttt ctggattcat cgactgtggc cggctgggtg tggcggaccg ctatcaggac 660
atagcgttgg ctacccgtga tattgctgaa gagcttggcg gcgaatgggc tgaccgcttc 720
ctcgtgcttt acggtatcgc cgctcccgat tcgcagcgca tcgccttcta tcgccttctt 780
gacgagttct tctga 795
<210> 114 Jan 2021
<211> 2038 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 114 2021200253
aggtggcact tttcggggaa atgtgcgcgg aacccctatt tgtttatttt tctaaataca 60
ttcaaatatg tatccgctca tgagacaata accctgataa atgcttcaat aatattgaaa 120
aaggaagagt atgagtattc aacatttccg tgtcgccctt attccctttt ttgcggcatt 180
ttgccttcct gtttttgctc acccagaaac gctggtgaaa gtaaaagatg ctgaagatca 240
gttgggtgca cgagtgggtt acatcgaact ggatctcaac agcggtaaga tccttgagag 300
ttttcgcccc gaagaacgtt ttccaatgat gagcactttt aaagttctgc tatgtggcgc 360
ggtattatcc cgtgttgacg ccgggcaaga gcaactcggt cgccgcatac actattctca 420
gaatgacttg gttgagtact caccagtcac agaaaagcat cttacggatg gcatgacagt 480
aagagaatta tgcagtgctg ccataaccat gagtgataac actgcggcca acttacttct 540
gacaacgatc ggaggaccga aggagctaac cgcttttttg cacaacatgg gggatcatgt 600
aactcgcctt gatcgttggg aaccggagct gaatgaagcc ataccaaacg acgagcgtga 660
caccacgatg cctgcagcaa tggcaacaac gttgcgcaaa ctattaactg gcgaactact 720
tactctagct tcccggcaac aattaataga ctggatggag gcggataaag ttgcaggacc 780
acttctgcgc tcggcccttc cggctggctg gtttattgct gataaatctg gagccggtga 840
gcgtgggtct cgcggtatca ttgcagcact ggggccagat ggtaagccct cccgtatcgt 900
agttatctac acgacgggga gtcaggcaac tatggatgaa cgaaatagac agatcgctga 960
gataggtgcc tcactgatta agcattggta actgtcagac caagtttact catatatact 1020
ttagattgat ttaaaacttc atttttaatt taaaaggatc taggtgaaga tcctttttga 1080
taatctcatg accaaaatcc cttaacgtga gttttcgttc cactgagcgt cagaccccgt 1140
agaaaagatc aaaggatctt cttgagatcc tttttttctg cgcgtaatct gctgcttgca 1200
aacaaaaaaa ccaccgctac cagcggtggt ttgtttgccg gatcaagagc taccaactct 1260
ttttccgaag gtaactggct tcagcagagc gcagatacca aatactgtcc ttctagtgta 1320
gccgtagtta ggccaccact tcaagaactc tgtagcaccg cctacatacc tcgctctgct 1380
aatcctgtta ccagtggctg ctgccagtgg cgataagtcg tgtcttaccg ggttggactc 1440
aagacgatag ttaccggata aggcgcagcg gtcgggctga acggggggtt cgtgcacaca 1500 2021200253
gcccagcttg gagcgaacga cctacaccga actgagatac ctacagcgtg agctatgaga 1560
aagcgccacg cttcccgaag ggagaaaggc ggacaggtat ccggtaagcg gcagggtcgg 1620
aacaggagag cgcacgaggg agcttccagg gggaaacgcc tggtatcttt atagtcctgt 1680
cgggtttcgc cacctctgac ttgagcgtcg atttttgtga tgctcgtcag gggggcggag 1740
cctatggaaa aacgccagca acgcggcctt tttacggttc ctggcctttt gctggccttt 1800
tgctcacatg ttctttcctg cgttatcccc tgattctgtg gataaccgta ttaccgcctt 1860
tgagtgagct gataccgctc gccgcagccg aacgaccgag cgcagcgagt cagtgagcga 1920
ggaagcggaa gagcgcctga tgcggtattt tctccttacg catctgtgcg gtatttcaca 1980
ccgcatatgg tgcactctca gtacaatctg ctctgatgcc gcatagttaa gccagtat 2038
<210> 115 <211> 97 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 115 gtaagtttag tctttttgtc ttttatttca ggtcccggat ccggtggtgg tgcaaatcaa 60
agaactgctc ctcagtggat gttgccttta cttctag 97
<210> 116 <211> 493 <212> DNA <213> Artificial Sequence
<220> Jan 2021
<223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 116 tcgaatcccg gccgggaacg gtgcattgga acgcggattc cccgtgccaa gagtgacgta 60
agtaccgcct atagagtcta taggcccaca aaaaatgctt tcttctttta atatactttt 120
ttgtttatct tatttctaat actttcccta atctctttct ttcagggcaa taatgataca 180 2021200253
atgtatcatg cctctttgca ccattctaaa gaataacagt gataatttct gggttaaggc 240
aatagcaata tttctgcata taaatatttc tgcatataaa ttgtaactga tgtaagaggt 300
ttcatattgc taatagcagc tacaatccag ctaccattct gcttttattt tatggttggg 360
ataaggctgg attattctga gtccaagcta ggcccttttg ctaatcatgt tcatacctct 420
tatcttcctc ccacagctcc tgggcaacgt gctggtctgt gtgctggccc atcactttgg 480
caaagaattg gga 493
<210> 117 <211> 31 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 117 gtaagtttag tctttttgtc ttttatttca g 31
<210> 118 <211> 56 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 118 acttaccata ctttacccgg aaactaatcg tcccactctc acatccttca ttgcag 56
<210> 119 <211> 148
<212> DNA Jan 2021
<213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 119 aaaagttccc cagccagaag cagagaagat gatgtcaaga aatcaagggg gataaatggc 60 2021200253
catagctgct gcaaatagct tattgcagtc tctagagtgt ggtaaacagg tttccagtgc 120
cagctgtgga ggtgacagcg gcagggaa 148
<210> 120 <211> 147 <212> DNA <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polynucleotide
<400> 120 aaaagttccc cagccagaag cagagaagat gatgtcaaga aatcaagggg gataaatggc 60
catagctgct gcaaatagct tattgcagtc tctagagtgt ggtaaacagg tttccagtgc 120
cagctgtgga ggtgacagcg gcaggga 147
<210> 121 <211> 106 <212> PRT <213> Artificial Sequence
<220> <223> Description of Artificial Sequence: Synthetic polypeptide
<400> 121 Ile Tyr Ile Phe Ile Ser Asp Thr Gly Arg Pro Phe Val Glu Met Tyr 1 5 10 15
Ser Glu Ile Pro Glu Ile Ile His Met Thr Glu Gly Arg Glu Leu Val 20 25 30
Ile Pro Cys Arg Val Thr Ser Pro Asn Ile Thr Val Thr Leu Lys Lys 35 40 45
Phe Pro Leu Asp Thr Leu Ile Pro Asp Gly Lys Arg Ile Ile Trp Asp 50 55 60
Ser Arg Lys Gly Phe Ile Ile Ser Asn Ala Thr Tyr Lys Glu Ile Gly 65 70 75 80
Leu Leu Thr Cys Glu Ala Thr Val Asn Gly His Leu Tyr Lys Thr Asn 85 90 95 2021200253
Tyr Leu Thr His Arg Gln Thr Asn Thr Ile 100 106

Claims (199)

CLAIMS WHAT IS CLAIMED IS:
1. A nucleic acid comprising a sequence encoding a VEGF inhibitor for use in treatment or prophylaxis of ocular neovascularization in a human subject; wherein said use comprises administering directly to a human subject in need thereof, to one or more sub retinal sites in said human subject, an effective amount of a pharmaceutical composition; wherein said pharmaceutical composition comprises said nucleic acid.
2. The nucleic acid for use according to claim 1, wherein said VEGF inhibitor is an anti-VEGF antibody or functional fragment thereof.
3. The nucleic acid for use according to claim 1, wherein said VEGF inhibitor is soluble receptor, fusion protein, or fragment thereof.
4. A nucleic acid comprising a sequence encoding sFLT-1 for use in treatment or prophylaxis of ocular neovascularization in a human subject; wherein said use comprises administering directly to a human subject in need thereof, to one or more sub retinal sites in said human subject, an effective amount of a pharmaceutical composition; wherein said pharmaceutical composition comprises said nucleic acid.
5. The nucleic acid for use according to claim 4, wherein said sFLT-1 is an inhibitor of VEGF and wherein said treating or reducing the likelihood of ocular neovascularization occurs as a result of VEGF inhibition.
6. The nucleic acid for use according to claim 4, wherein the pharmaceutical composition is capable of elevating levels of sFLT-1 protein in the vitreous of the human subject after at least 72 hours after administration of said pharmaceutical composition to said human subject, compared to levels of sFLT-1 protein in the vitreous of said human prior to said administration.
7. The nucleic acid for use according to any preceding claim, wherein the nucleic acid comprising said sFLT-1 comprises a recombinant virus, the virus selected from the group consisting of: adeno-associated virus (AAV), adenovirus, helper dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
8. The nucleic acid for use according to claim 7, wherein the recombinant virus is an AAV selected from the group consisting of: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, and hybrids thereof.
9. The nucleic acid for use according to any of preceding claim, wherein the nucleic acid encoding the sFLT-1 is operatively linked to a promoter selected from the group consisting of: cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
10. The nucleic acid for use according to any preceding claim, wherein the nucleic acid is a plasmid or is delivered by a viral vector.
11. The nucleic acid for use according to any preceding claim, said use further comprising administration of one or more additional VEGF inhibitors to the human subject in need of treatment or reduction, optionally wherein said additional VEGF inhibitor is ranibizumab, bevacizumab or aflibercept.
12. The nucleic acid for use according to any preceding claim, said use comprising administering said pharmaceutical composition to a human subject at least 55 years old.
13. The nucleic acid for use according to any preceding claim, said use comprising administering said pharmaceutical composition outside the fovea.
14. The nucleic acid for use according to any preceding claim, wherein the best corrected visual acuity (BCVA) of the human subject in need of treatment, as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, improves by at least 1, 2, 3, 4 or 5 lines following the administering of an effective amount of the pharmaceutical composition.
15. The nucleic acid for use according to any preceding claim, wherein the administering of the pharmaceutical composition reduces the frequency of administration of other anti-VEGF therapy.
16. The nucleic acid of claim 15, wherein the administering of other anti-VEGF therapy is less than once per 3 months or less than once per 6 months or less than once per year.
17. The nucleic acid for use according to any preceding claim, wherein the administering of the pharmaceutical composition is performed at a frequency less than 3 times a year in the human. 18. A unit dose of a pharmaceutical composition comprising a recombinant virus, wherein the unit comprises at least110 to 3x101 vector genomes, and wherein the recombinant viruses comprise a nucleic acid encoding the sFLT-1 operatively linked to a promoter and wherein the unit dose is capable of elevating levels of sFLT-1 protein in the vitreous of a human subject after at least 7 days, after administering to the human subject. 19. A pharmaceutical composition comprising recombinant viruses or plasmids wherein each recombinant virus or plasmid comprises a nucleic acid, wherein the nucleic acid comprises an sFLT-1 transgene sequence operatively linked to a promoter sequence, and wherein the pharmaceutical composition is capable of increasing the level of sFLT-1 protein in the vitreous of a human subject after at least 7 days after administering to the human subject. 20. The pharmaceutical composition of claim 19, wherein the promoter sequence and the sFLT-1 transgene sequence are separated by a sequence greater than 300 base pairs. 21. The pharmaceutical composition of claim 19, wherein the promoter sequence and the sFLT-1 transgene sequence are separated by a UTR sequence 22. A pharmaceutical composition comprising nucleic acid elements in the following order: a. a promoter sequence selected from the group consisting of SEQ ID No. 17, SEQ ID No.
18, SEQ ID No.
19, SEQ ID No.
20, SEQ ID No.
21, SEQ ID No.
22, SEQ ID No. 23, SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31 and SEQ ID No. 32; b. a sequence encoding a VEGF inhibitor selected from the group consisting of SEQ ID No. 102, SEQ ID No. 103, SEQ ID No. 104, SEQ ID No. 105, SEQ ID No. 106, SEQ ID No. 107 SEQ ID No. 108 or SEQ ID No. 122; c. an intron sequence consisting of SEQ ID No. 48, SEQ ID No. 115, SEQ ID No. 116, SEQ ID No. 117, SEQ ID No. 118, SEQ ID No. 119 or SEQ ID No.120; d. a UTR sequence selected from the group consisting of SEQ ID No. 91, SEQ ID No. 2, SEQ ID No. 92, SEQ ID No. 93, SEQ ID No. 94, SEQ ID No. 95, SEQ ID No. 96, SEQ ID No. 97, SEQ ID No. 98, SEQ ID No. 99, SEQ ID No.100, and SEQ ID No. 101; and e. a termination sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, and SEQ ID No. 55.
23. A pharmaceutical composition comprising nucleic acid elements in the following order: a. an ITR sequence selected from the group consisting of SEQ ID No. 56, SEQ ID No. 57, SEQ ID No. 58, SEQ ID No. 59; b. a linker sequence selected from the group consisting of SEQ ID No. 60, SEQ ID No. 63, SEQ ID No. 68, SEQ ID No. 72, SEQ ID No. 76, SEQ ID No. 77, and SEQ ID No. 84; c. a promoter sequence selected from the group consisting of SEQ ID No. 17, SEQ ID No. 18, SEQ ID No. 19, SEQ ID No. 20, SEQ ID No. 21, SEQ ID No. 22, SEQ ID No. 23, SEQ ID No. 24, SEQ ID No. 25, SEQ ID No. 26, SEQ ID No. 27, SEQ ID No. 28, SEQ ID No. 29, SEQ ID No. 30, SEQ ID No. 31 and SEQ ID No. 32, SEQ ID No. 33, SEQ ID No. 34, SEQ ID No. 35, SEQ ID No. 36, SEQ ID No. 37, SEQ ID No. 38, SEQ ID No. 39, SEQ ID No. 40, SEQ ID No. 41, SEQ ID No. 42, SEQ ID No. 43, SEQ ID No. 44, SEQ ID No. 45, SEQ ID No. 46 and SEQ ID No. 47; d. a linker sequence selected from the group consisting of SEQ ID No. 60, SEQ ID No. 64, SEQ ID No. 70, SEQ ID No. 71, SEQ ID No. 73, SEQ ID No. 74, SEQ ID No. 87; e. an intron sequence consisting of SEQ ID No. 48, SEQ ID No. 115, SEQ ID No. 116, SEQ ID No. 117, SEQ ID No. 118, SEQ ID No. 119 and SEQ ID No. 120; f. a linker sequence selected from the group consisting of SEQ ID No. 60, SEQ ID No. 64, SEQ ID No. 65, SEQ ID No. 75, SEQ ID No. 79, SEQ ID No. 81, SEQ ID No. 82, and SEQ ID No. 89; g. a UTR sequence selected from the group consisting of SEQ ID No. 91, SEQ ID No. 2, SEQ ID No. 92, SEQ ID No. 93, SEQ ID No. 94, SEQ ID
No. 95, SEQ ID No. 96, SEQ ID No. 97, SEQ ID No. 98, SEQ ID No. 99, SEQ ID No.100, and SEQ ID No. 101; and h. a sequence encoding a VEGF inhibitor selected from the group consisting of SEQ ID No. 102, SEQ ID No. 103, SEQ ID No. 104, SEQ ID No. 105, SEQ ID No. 107, SEQ ID No. 108 and SEQ ID No. 122; i. a UTR sequence selected from the group consisting of SEQ ID No. 91, SEQ ID No. 2, SEQ ID No. 92, SEQ ID No. 93, SEQ ID No. 94, SEQ ID No. 95, SEQ ID No. 96, SEQ ID No. 97, SEQ ID No. 98, SEQ ID No. 99, SEQ ID No.100, and SEQ ID No. 101; j. a linker sequence selected from the group consisting of SEQ ID No. 60, SEQ ID No. 62, SEQ ID No. 66, SEQ ID No. 67, SEQ ID No. 69, SEQ ID No. 83, SEQ ID No. 84, SEQ ID No. 85, SEQ ID No. 86; k. a termination sequence selected from the group consisting of SEQ ID No. 49, SEQ ID No. 50, SEQ ID No. 51, SEQ ID No. 52, SEQ ID No. 53, SEQ ID No. 54, and SEQ ID No. 55; 1. a linker sequence selected from the group consisting of SEQ ID No. 60, SEQ ID No. 61, SEQ ID No. 80, SEQ ID No. 87, SEQ ID No. 88, SEQ ID No. 89, SEQ ID No. 90; and m. an ITR sequence selected from the group consisting of SEQ ID No. 56, SEQ ID No. 57, SEQ ID No. 58, and SEQ ID No. 59.
24. A method of generating a recombinant virus in a cell, the method comprising: a. introducing into a cell, a nucleic acid comprising at least 1 promoter sequence operatively linked to a sFLT-1 transgene sequence, an ITR sequence, and a UTR sequence; and b. purifying the recombinant virus.
25. A cell for generating recombinant viral vector, the cell comprising at least 1 promoter polynucleotide sequence operatively linked to a sFLT-1 transgene sequence, an ITR polynucleotide sequence, and a UTR polynucleotide sequence.
26. A method for the treatment or prophylaxis of ocular neovascularization in a human subject comprising: administering to one or more subretinal sites a pharmaceutically effective amount of a pharmaceutical composition comprising a nucleic acid encoding a VEGF inhibitor to a human subject in need of treatment.
27. The method of claim 26, wherein said VEGF inhibitor is an anti-VEGF antibody against VEGF or a functional fragment thereof.
28. The method of claim 26, wherein said VEGF inhibitor is a soluble receptor, fusion protein, or a functional fragment thereof.
29. A method for the treatment or prophylaxis of ocular neovascularization in a human subject comprising: administering to one or more subretinal sites a pharmaceutically effective amount of a pharmaceutical composition comprising a nucleic acid encoding sFLT-1 to a human subject in need of treatment.
30. The method of claim 29, wherein the human subject has or is suspected of having one or more conditions selected from the group consisting of: age-related macular degeneration (AMD), wet-AMD, dry-AMD, retinal neovascularization, choroidal neovascularization and diabetic retinopathy.
31. The method of claim 29, wherein the human subject has or is suspected of having one or more conditions selected from the group consisting of: proliferative diabetic retinopathy, retinal vein occlusion, central retinal vein occlusion, branched retinal vein occlusion, diabetic macular edema, diabetic retinal ischemia, ischemic retinopathy and diabetic retinal edema.
32. The method of claim 29, wherein the pharmaceutical composition comprises a recombinant virus, the virus selected from the group consisting of: adeno associated virus (AAV), adenovirus, helper- dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
33. The method of claim 29, wherein the nucleic acid encoding the sFLT-1 is operatively linked to a promoter selected from the group consisting of: cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
34. The method of claim 29, wherein the sFLT-1 nucleic acid encodes at least 1 dimerization domain.
35. The method of claim 29, wherein the nucleic acid does not contain a prokaryotic regulatory sequence.
36. The method of claim 29, wherein the nucleic acid contains a prokaryotic regulatory sequence.
37. The method of claim 29, wherein the nucleic acid is a plasmid or is delivered by a virus.
38. The method of claim 29, further comprising administration of one or more treatments of a VEGF inhibitor to the human subject.
39. The method of claim 38, wherein the VEGF inhibitor is administered within 30, 90, or 180 days of administration of the pharmaceutical composition.
40. The method of claim 38, wherein the pharmaceutical composition and the VEGF inhibitor are administered at least 24 hours apart.
41. The method of claim 29, wherein the pharmaceutical composition is administered to a human subject at least 55 years old.
42. The method of claim 29, wherein the administering is performed outside the fovea.
43. The method of claim 29, wherein the best corrected visual acuity (BCVA) of the human subject, as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, improves by at least 1, 2, 3, 4 or 5 lines following the administering of the pharmaceutical composition.
44. The method of claim 29, wherein the best corrected visual acuity (BCVA), as measured by ETDRS (Early Treatment Diabetic Retinopathy Study), decreases by fewer than 15 letters following the administering of the pharmaceutical composition.
45. The method of claim 29, wherein administering the pharmaceutical composition is performed under conditions selected from the group consisting of: administering the pharmaceutical composition in one eye, administering the pharmaceutical composition sequentially in two eyes, and administering the pharmaceutical composition simultaneously in two eyes.
46. The method of claim 29, wherein a reduction in neovascularization as observed by a Fluorscein Angiography (FA) follows the administering of the pharmaceutical composition.
47. The method of claim 29, wherein no superficial, anterior segment or vitreous inflammatory signs are present in the human subject at least I week after injection.
48. The method of claim 29, wherein the human subject does not require rescue treatment for at least 30, 60, 90, 120, 180, 270 or 365 days after the administering of the pharmaceutical composition.
49. The method of claim 32, wherein no increased anti-AAV cytotoxic T cell response is measured following the administering step.
50. The method of claim 32, wherein no virus is detected in the human subject's blood, saliva or urine samples, 3, 7, 14, 21 or 30 days after administering the pharmaceutical composition.
51. The method of claim 29 wherein the sFiT- protein level in the vitreous of the human subject is about 500 - 5,000 pg/ml, 7, 14, 21, 30, 60, 90, 120, 150, 180, 270 or.365 days after administering the pharmaceutical composition in the human subject.
52. The method of claim 29, wherein the human subject has received one or more treatments with a VEGF inhibitor prior to the administering of the pharmaceutical composition.
53. The method of claim 29, wherein the human subject has not previously received treatment with a VEGF inhibitor before the administering of the pharmaceutical composition.
54. The method of claim 29, wherein the administering of the pharmaceutical composition is performed at a frequency less than 3 times a year in the human subject.
55. The method of claim 29, wherein the administering of the pharmaceutical composition reduces the frequency of administration of additional VEGF inhibitor treatments in the human subject.
56. The method of claim 29, wherein the concentration of sFLT-1 protein in the vitreous of the human subject is elevated when measured at 7, 14, 21, 30, 60, 90, 120, 150, 180, 270 or 365 days after the administering of the pharmaceutical composition.
57. The method of claim 29, wherein the human subject has the vitreous gel removed prior to or within one week of the administration of said agent.
58. The method of claim 29, wherein said pharmacological agent is administered using a vitrectomy system that is smaller than 20 gauge.
59. The method of claim 29, wherein said pharmacological agent is administered using a cannula tip that is smaller than 39 gauge.
60. The method of claim 29, wherein the central retinal thickness of said subject does not increase by more than 50 microns, 100 microns, or 250 microns within 12 months following treatment with said pharmacological agent.
61. The method of claim 29, wherein geographic atrophy does not progress in the diseased eye of the human subject.
62. The method of claim 29, wherein the human subject has sensitivity or allergy to penicillin.
63. The method of claim 29, wherein the human subject has no increase in systemic levels of VEGF inhibitor.
64. A pharmaceutical composition comprising recombinant viruses or plasmids comprising a nucleic acid comprising at least 1 promoter sequence operatively linked to an sFLT-1 transgene sequence, wherein the promoter sequence and the sFLT-1 transgene sequence are separated by a sequence greater than 300 base pairs.
65. A pharmaceutical composition comprising recombinant viruses or plasmids comprising a nucleic acid comprising at least 1 promoter sequence operatively linked to an sFLT-1 transgene sequence, wherein the promoter sequence and the sFLT-1 transgene sequence are separated by a UTR sequence.
66. The pharmaceutical composition of claim 65, wherein the UTR sequence comprises at least 10 base pairs.
67. The pharmaceutical composition of claim 66, wherein the nucleic acid comprises at least 3 linker sequences each comprising at least 50 base pairs.
68. A unit dose of a pharmaceutical composition comprising recombinant viruses of IxI10 to 3x101 vector genomes, wherein the recombinant viruses comprise a nucleic acid encoding sFLT-1 operatively linked to a promoter.
69. A method of generating a recombinant virus in a cell, the method comprising: a. introducing into a cell, a nucleic acid comprising at least 1 promoter sequence operatively linked to an sFLT-1 transgene sequence, an ITR sequence, and UTR sequence; and b. purifying the recombinant virus.
70. The method of claim 69, wherein said nucleic acid sequence does not contain a beta-lactam antibiotic resistance sequence.
71. The method of claim 69, wherein the recombinant virus produces sFLT-1 protein in the range of 100-10,000 pg/mL when measured at 72 hours following transduction of HEK293 cells at multiplicity of infectionof1x10 4 -1x10 6
.
72. The method of claim 69, wherein the recombinant virus inhibits proliferation of human umbilical vascular endothelial (HUVEC) cells.
73. A cell for generating a recombinant viral vector, the cell comprising at least 1 promoter polynucleotide sequence operatively linked to a sFLT-1 transgene sequence, an ITR polynucleotide sequence, and a UTR polynucleotide sequence.
74. The method of claim 29, wherein no superficial, anterior segment or vitreous inflammatory signs are present ini the human subject at I week or at 3, 6, 9 or 12 months after administration of the pharmaceutical composition.
75. The method of claim 29, wherein the human subject experiences no visual acuity loss, IOP elevation, retinal detachment, intraocular or systemic immune response after administering the pharmaceutical composition.
76. The method of claim 29, wherein the human subject is resistant to treatment with VEGF inhibitors.
77. The method of claim 29, wherein said pharmacological agent is administered using a vitrectomy system that does not require sutures.
78. The method of claim 29, wherein the administration of said pharmacological agent is followed by gas/fluid exchange in the vitreous chamber.
79. A method for treating or reducing ocular neovascularization in a human subject, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding a VEGF inhibitor to a human subject in need of a treatment.
80. A method for treating or reducing ocular neovascularization in a human subject, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein to a human subject in need of a treatment.
81. A method for preventing ocular neovascularization in a human subject, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein to a human subject.
82. A method for treating or reducing choroidal neovascularization in a human subject with AMD, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein to a human subject in need of a treatment for AMD.
83. A method for preventing choroidal neovascularization in a human subject with dry AMD, comprising: administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of a recombinant virus comprising a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein to a human subject.
84. The method of claim 79, 80, 81, 82 or 83, wherein said virus is selected from adeno-associated virus (AAV), adenovirus, helper- dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
85. The method of claim 79, 80, 81, 82 or 83, wherein said AAV is selected from the group consisting of: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, and hybrids thereof.
86. The method of claim 79, 80, 81, 82 or 83wherein the recombinant virus is generated from a plasmid comprising a kanamycin resistance marker.
87. The method of claim 79, 80, 81, 82 or 83wherein the recombinant virus is generated from a plasmid comprising an ampicillin resistance marker.
88. The method of claim 79, 80, 81, 82 or 83 wherein the recombinant virus is generated from a plasmid comprising a T7 RNA polymerase promoter sequence.
89. The method of claim 79, 80, 81, 82 or 83 wherein the recombinant virus is generated from a plasmid not comprising a T7 RNA polymerase promoter sequence.
90. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises an ampicillin resistance marker.
91. The method of claim 79, 80, 81, 82 or 83 wherein said recombinant virus comprises a T7 RNA polymerase promoter sequence.
92. The method of claim 79, 80, 81, 82 or 83 wherein said recombinant virus does not comprise a T7 RNA polymerase promoter sequence.
93. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises a promoter selected from cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
94. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises an enhancer.
95. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises a chimeric intron.
96. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises a SV40 poly A sequence.
97. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises a human sFLT-1 protein or a functional fragment thereof.
98. The method of claim 79, 80, 81, 82 or 83, wherein said recombinant virus comprises a regulatory nucleic acid fragment that is capable of directing selective expression of the sFLT-1 protein in an eye cell.
99. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition comprises about 1 x 106 to about x 105 recombinant viruses.
100. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition comprises about 1 x 10' to about x 1014 recombinant viruses.
101. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition comprises about I x 108to about I x 10 recombinant viruses.
102. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition comprises about I x 109 to about 1 x 102 recombinant viruses.
103. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition comprises about I x 10 to about 1 x10 recombinant viruses.
104. The method of claim 79, 80, 81, 82 or 83, wherein said pharmaceutical composition is administered via subretinal injection.
105. The method of claim 79, 80, 81, 82 or 83, further comprising administering to the human subject a pharmaceutically effective amount of a VEGF inhibitor.
106. The method of claim 105, wherein said VEGF inhibitor comprises an antibody against VEGF or a functional fragment thereof.
107. The method of claim 105, wherein said VEGF inhibitor comprises ranibizumab.
108. The method of claim 105, wherein said pharmaceutical composition is administered within 90 days of the administering of said VEGF inhibitor.
109. The method of claim 105, wherein said pharmaceutical composition is administered at least 5, 6, 7, or 8 days after the administering of said VEGF inhibitor.
110. The method of claim 105, wherein said VEGF inhibitor is administered at least 1 time prior to administering the said pharmaceutical composition.
111. The method of claim 105, wherein said VEGF inhibitor is administered for at least 1 time following administering of said pharmaceutical composition.
112. The method of claim 105, wherein said VEGF inhibitor is administered at least 2 times within 90 days of the administering of said VEGF inhibitor.
113. The method of claim 105, wherein said VEGF inhibitor is administered over a period of 6 to 7 weeks.
114. The method of claim 82, wherein said AMD is wet AMD.
115. The method of claim 81 wherein said human subject is at risk for developing age-related macular degeneration.
116. The method of claim 81 wherein said human subject presents symptoms of early stage age-related macular degeneration.
117. The method of claim 80 or 82 wherein said human subject has been previously treated with a different VEGF inhibitor for the treatment of AMD.
118. The method of claims 81 or 83 wherein the treated eye of said human subject has not been previously treated with a different VEGF inhibitor for the treatment of AMD.
119. The method of claim 80 or 82 wherein at least 5 treatments of a VEGF inhibitor for the treatment of AMD have been previously administered to said human subject.
120. The method of claim 80 or 82 wherein at least 10 treatments of a VEGF inhibitor for the treatment of AMD have been previously administered to said human subject.
121. The method of claim 80 or 82 wherein at least 15 treatments of a VEGF inhibitor for the treatment of AMD have been previously administered to said human subject.
122. The method of claim 80 or 82 wherein at least 20 treatments of a VEGF inhibitor for the treatment of AMD have been previously administered to said human subject.
123. The method of claim 79, 80, 81, 82 or 83 wherein best corrected visual acuity (BCVA), as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, decreased by fewer than 15 letters after said treatment with said pharmaceutical composition.
124. The method of claim 79, 80, 81, 82 or 83 wherein best corrected visual acuity (BCVA), as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, improved by less than 2 lines after said treatment with ranibizumab.
125. The method of claim 79, 80, 81, 82 or 83 wherein said human subject is at risk for developing dry age-related macular degeneration
126. The method of claim 79, 80, 81, 82 or 83 wherein said human subject presents symptoms of early stage dry age-related macular degeneration.
127. The method of claim 79, 80, 81, 82 or 83, wherein said treatment is administered at a frequency of less than once per 12 months.
128. The method of claim 79, 80, 81, 82 or 83, wherein said treatment is administered at a frequency of less than once per 6 months.
129. The method of claim 79, 80, 81, 82 or 83, wherein said treatment is administered at a frequency of less than once per 18 months.
130. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject where subject is age 20 years or older.
131. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject where subject is age is 40 years or older.
132. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject where subject is age is 50 years or older.
133. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject where subject is age is 65 years or older.
134. The method of claim 79, 80, 81, 82 or 83, wherein said administration is to a site that does not include the fovea.
135. The method of claim 79, 80, 81, 82 or 83, wherein said administration is in the central retina adjacent to the fovea.
136. The method of claim 80, wherein administration is to one or more cells of the subretinal space of the central retina.
137. The method of claim 79, 80, 81, 82 or 83, wherein administration is to one or more cells of the subretinal space of the outer macula.
138. The method of claim 79, 80, 81, 82 or 83, wherein said administration is to one or more cells of the subretinal space of the inner macula.
139. The method of claim 79, 80, 81, 82 or 83, wherein said administration is to retinal pigment epithelial cells.
140. The method of claim 79, 80, 81, 82 or 83, wherein said administration does not adversely affect central retinal function or central retinal structure.
141. The method of claim 79, 80, 81, 82 or 83, wherein said administering step is carried out simultaneously in both eyes.
142. The method of claim 79, 80, 81, 82 or 83, wherein said administering step is carried out sequentially in both eyes.
143. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in one eye.
144. The method of claim 79, 80, 81, 82 or 83 wherein administering step is carried out in one eye when fellow eye presents symptoms of AMD.
145. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject resistant to penicillin.
146. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject sensitive to penicillin.
147. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject allergic to penicillin.
148. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject not allergic to penicillin.
149. The method of claim 79, 80, 81, 82 or 83, wherein no vector is detected in said human subject's blood, saliva or urine samples, 3, 7, 14, 21 or 30 days after administering said pharmaceutical composition.
150. The method of claim 149, wherein the presence of said viral vector is detected by qPCR or ELISA.
151. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT- protein levels in the vitreous of said human subject is about 500 - 5,000 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
152. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT- Iprotein levels in the vitreous of said human subject is about 600 - 4,000 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
153. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT-1 protein levels in the vitreous of said human subject is about 800 -. 3,000 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
154. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT-1 protein levels in the vitreous of said human subject is about 900 - 2,000 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
155. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT-1 protein levels in the vitreous of said human subject is about 1,000 - 1,800 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
156. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT-1 protein levels in the vitreous of said human subject is about 4,00 - 1,000 pg/ml, 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270, 365 days after administering said pharmaceutical composition.
157. The method of claim 79, 80, 81, 82 or 83, wherein said human subject shows no clinically significant retinal toxicity as assessed by serial ophthalmic examinations over least a.two months period.
158. The method of claim 79, 80, 81, 82 or 83, wherein no superficial, anterior segment or vitreous inflamTmatory signs are present in said human subject over least a two months period.
159. The method of claim 79, 80, 81, 82 or 83, wherein said human subject does not require rescue treatment at least 120 days post said administering.
160. The method of claim 79, 80, 81, 82 or 83, wherein there is no evidence of visual acuity loss, IOP elevation, retinal detachment, or any intraocular or systemic immune response in said human subject at least 120 days post said administering.
161. The method of claim 79, 80, 81, 82 or 83 wherein no inflammation of the vitreous is observed by biomicroscopy (BE) and indirect opthalmoscopy (OE) following the administering step.
162. The method of claim 79, 80, 81, 82 or 83 wherein no cytotoxic T cell response follows the administering step.
163. The method of claim 79, 80, 81, 82 or 83 wherein no cytotoxic T cell response within 10% of normal range follows the administering step.
164. The method of claim 79, 80, 81, 82 or 83 wherein best corrected visual acuity (BCVA), as measured by ETDRS (Early Treatment Diabetic Retinopathy Study) letters, improves following the administering step.
165. The method of claim 79, 80, 81, 82 or 83 wherein BCVA is improved by 1 line or more.
166. The method of claim 79, 80, 81, 82 or 83 wherein BCVA is improved by at least 2 lines or more.
167. The method of claim 79, 80, 81, 82 or 83 wherein BCVA is improved by at least 3 lines or more.
168. The method of claim 79, 80, 81, 82 or 83 wherein BCVA is improved by at least 4 lines or more.
169. The method of claim 79, 80, 81, 82 or 83 wherein BCVA is improved by at least 5 lines or more.
170. The method of claim 79, 80, 81, 82 or 83 wherein a reduction in neovascularization as observed by a Fluorscein Angiography (FA) follows the administering step.
171. The method of claim 79, 80, 81, 82 or 83 wherein frequency of administration of other anti-VEGF therapy is reduced.
172. The method of claim 79, 80, 81, 82 or 83 wherein frequency of administration other anti-VEGF therapy is less than monthly.
173. The method of claim 79, 80, 81, 82 or 83 wherein frequency of administration other anti-VEGF therapy is less than 3 months.
174. The method of claim 79, 80, 81, 82 or 83 wherein frequency of administration other anti-VEGF therapy is less than 6 months.
175. The method of claim 79, 80, 81, 82 or 83 wherein frequency of administration other anti-VEGF therapy is less than 1 year.
176. A unit dose of pharmaceutical composition comprising about 1 x 106 to 1 x 101 recombinant viruses, wherein each said recombinant virus comprises a nucleic acid encoding soluble Fms-related tyrosine kinase-1 (sFLT-1) protein.
177. A unit dose of pharmaceutical composition of claim 176, comprising about 1 x 10' to about 3 x 10 recombinant viruses.
178. A unit dose of pharmaceutical composition of claim 176, comprising about 1 x 10 to about I x 10" recombinant viruses.
179. A unit dose of pharmaceutical composition of claim 176, comprising about I x 10 to about I x 101 recombinant viruses.
180. A unit dose of pharmaceutical composition of claim 176, comprising about 1 x 10 to about I x 1012recombinant viruses.
181. A unit dose of pharmaceutical composition of claim 176, comprising about I x 10 )to about I x 1012 recombinant viruses.
182. The unit dose of pharmaceutical composition of claim 176, wherein said sFLT-1 protein comprises human sFLT-1 protein or a functional fragment thereof.
183. The unit dose of pharmaceutical composition of claim 176, wherein said virus is selected from adeno-associated virus (AAV), adenovirus, helper dependent adenovirus, retrovirus, herpes simplex virus, lentivirus, poxvirus, hemagglutinatin virus of Japan-liposome (HVJ) complex, Moloney murine leukemia virus, and HIV-based virus.
184. The unit dose of pharmaceutical composition of claim 176, wherein said AAV is selected from the group consisting of: AAV1, AAV2, AAV3, AAV4, AAV5, AAV6, AAV7, AAV8, AAV9, AAV10, AAV11, AAV12, and hybrids thereof.
185. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus comprises a promoter selected from cytomegalovirus (CMV) promoter, Rous sarcoma virus (RSV) promoter, MMT promoter, EF-1 alpha promoter, UB6 promoter, chicken beta-actin promoter, CAG promoter, RPE65 promoter and opsin promoter.
186. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus comprises an enhancer.
187. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus comprises a intron.
188. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus comprises a SV40 poly A.
189. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus comprises a regulatory nucleic acid fragment that is capable of directing selective expression of the sFLT-1 protein in an eye cell.
190. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus is formulated with a surfactant.
191. The unit dose of pharmaceutical composition of claim 168, wherein said recombinant virus is manufactured using producer-clone methods.
192. The unit dose of pharmaceutical composition of claim 168, wherein said recombinant virus is manufactured using recombinant baculovirus.
193. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus is manufactured using Ad-AAV.
194. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus is manufactured using HEK 293 cells.
195. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus is manufactured using insect cells.
196. The unit dose of pharmaceutical composition of claim 176, wherein said recombinant virus is manufactured using herpes-helper virus.
197. A method of treating, reducing, or preventing ocular neovascularization or macular edema in a human subject, comprising administering subretinally a pharmaceutical composition comprising a pharmaceutically effective amount of recombinant AAV gene delivery vector which directs the expression of an anti angiogenic factor, such that administration of said vector inhibits neovascularization or macular edema in a human subject.
198. The method of claim 79, 80, 81, 82 or 83 wherein said administering step is carried out in said human subject with no history of infection with hepatitis B or hepatitis C.
199. The method of claim 79, 80, 81, 82 or 83, wherein said sFLT-1 protein levels in the vitreous of said human subject is elevated when measured at 7, 14, 21 or 30, 60, 90, 120, 150, 180, 270 or 365 days after administering said pharmaceutical composition.
AU2021200253A 2012-05-15 2021-01-15 Treatment of AMD using AAV sFlt-1 Abandoned AU2021200253A1 (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
AU2021200253A AU2021200253A1 (en) 2012-05-15 2021-01-15 Treatment of AMD using AAV sFlt-1

Applications Claiming Priority (14)

Application Number Priority Date Filing Date Title
US201261647461P 2012-05-15 2012-05-15
US61/647,461 2012-05-15
US201261670535P 2012-07-11 2012-07-11
US61/670,535 2012-07-11
US201261678555P 2012-08-01 2012-08-01
US61/678,555 2012-08-01
US201261691660P 2012-08-21 2012-08-21
US61/691,660 2012-08-21
US201361775440P 2013-03-08 2013-03-08
US61/775,440 2013-03-08
PCT/US2013/040011 WO2013173129A2 (en) 2012-05-15 2013-05-07 Treatment of amd using aav sflt-1
AU2013263159A AU2013263159B2 (en) 2012-05-15 2013-05-07 Treatment of amd using AAV sFlt-1
AU2018211212A AU2018211212B2 (en) 2012-05-15 2018-07-31 Treatment of amd using AAV sFlt-1
AU2021200253A AU2021200253A1 (en) 2012-05-15 2021-01-15 Treatment of AMD using AAV sFlt-1

Related Parent Applications (1)

Application Number Title Priority Date Filing Date
AU2018211212A Division AU2018211212B2 (en) 2012-05-15 2018-07-31 Treatment of amd using AAV sFlt-1

Publications (1)

Publication Number Publication Date
AU2021200253A1 true AU2021200253A1 (en) 2021-03-18

Family

ID=49584435

Family Applications (3)

Application Number Title Priority Date Filing Date
AU2013263159A Active AU2013263159B2 (en) 2012-05-15 2013-05-07 Treatment of amd using AAV sFlt-1
AU2018211212A Active AU2018211212B2 (en) 2012-05-15 2018-07-31 Treatment of amd using AAV sFlt-1
AU2021200253A Abandoned AU2021200253A1 (en) 2012-05-15 2021-01-15 Treatment of AMD using AAV sFlt-1

Family Applications Before (2)

Application Number Title Priority Date Filing Date
AU2013263159A Active AU2013263159B2 (en) 2012-05-15 2013-05-07 Treatment of amd using AAV sFlt-1
AU2018211212A Active AU2018211212B2 (en) 2012-05-15 2018-07-31 Treatment of amd using AAV sFlt-1

Country Status (27)

Country Link
US (7) US20130323302A1 (en)
EP (2) EP2849802B1 (en)
JP (5) JP6466322B2 (en)
KR (3) KR102154225B1 (en)
CN (2) CN115337407A (en)
AU (3) AU2013263159B2 (en)
BR (1) BR112014028633A8 (en)
CA (1) CA2873628C (en)
CY (1) CY1124495T1 (en)
DK (1) DK3501549T3 (en)
ES (1) ES2890813T3 (en)
HK (1) HK1207568A1 (en)
HR (1) HRP20211453T1 (en)
HU (1) HUE056327T2 (en)
IL (2) IL235679B (en)
LT (1) LT3501549T (en)
MX (2) MX362452B (en)
NZ (2) NZ702637A (en)
PL (1) PL3501549T3 (en)
PT (1) PT3501549T (en)
RS (1) RS62359B1 (en)
RU (1) RU2014150340A (en)
SG (2) SG10201609412QA (en)
SI (1) SI3501549T1 (en)
TW (3) TWI775096B (en)
WO (1) WO2013173129A2 (en)
ZA (1) ZA201409025B (en)

Families Citing this family (87)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US9233131B2 (en) 2003-06-30 2016-01-12 The Regents Of The University Of California Mutant adeno-associated virus virions and methods of use thereof
US9441244B2 (en) 2003-06-30 2016-09-13 The Regents Of The University Of California Mutant adeno-associated virus virions and methods of use thereof
US9730790B2 (en) 2009-09-29 2017-08-15 Edwards Lifesciences Cardiaq Llc Replacement valve and method
US8663624B2 (en) 2010-10-06 2014-03-04 The Regents Of The University Of California Adeno-associated virus virions with variant capsid and methods of use thereof
LT3693025T (en) 2011-04-22 2022-02-10 The Regents Of The University Of California Adeno-associated virus virions with variant capsid and methods of use thereof
TWI775096B (en) 2012-05-15 2022-08-21 澳大利亞商艾佛蘭屈澳洲私營有限公司 Treatment of amd using aav sflt-1
US9681951B2 (en) 2013-03-14 2017-06-20 Edwards Lifesciences Cardiaq Llc Prosthesis with outer skirt and anchors
JP6600624B2 (en) 2013-05-31 2019-10-30 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア Adeno-associated virus mutant and method of use thereof
KR101591823B1 (en) * 2013-12-27 2016-02-04 재단법인 목암생명공학연구소 Expression vector having an improved gene expression level
CN111068072A (en) * 2014-02-06 2020-04-28 建新公司 Compositions and methods for treating and preventing macular degeneration
GB201403684D0 (en) 2014-03-03 2014-04-16 King S College London Vector
EP3800191A1 (en) 2014-03-17 2021-04-07 Adverum Biotechnologies, Inc. Compositions and methods for enhanced gene expression in cone cells
SI3122878T1 (en) * 2014-03-24 2019-05-31 Translate Bio, Inc. Mrna therapy for the treatment of ocular diseases
WO2015153889A2 (en) * 2014-04-02 2015-10-08 University Of Florida Research Foundation, Incorporated Materials and methods for the treatment of latent viral infection
PT3137497T (en) * 2014-05-02 2021-07-12 Genzyme Corp Aav vectors for retinal and cns gene therapy
US10577627B2 (en) 2014-06-09 2020-03-03 Voyager Therapeutics, Inc. Chimeric capsids
US9840553B2 (en) 2014-06-28 2017-12-12 Kodiak Sciences Inc. Dual PDGF/VEGF antagonists
WO2016073693A2 (en) 2014-11-05 2016-05-12 Voyager Therapeutics, Inc. Aadc polynucleotides for the treatment of parkinson's disease
AU2015346162B2 (en) 2014-11-14 2022-02-10 Voyager Therapeutics, Inc. Compositions and methods of treating amyotrophic lateral sclerosis (ALS)
JP6863891B2 (en) 2014-11-14 2021-04-21 ボイジャー セラピューティクス インコーポレイテッドVoyager Therapeutics,Inc. Regulatory polynucleotide
WO2016094783A1 (en) 2014-12-12 2016-06-16 Voyager Therapeutics, Inc. Compositions and methods for the production of scaav
GB201502137D0 (en) * 2015-02-09 2015-03-25 Ucl Business Plc Treatment
EA201791939A1 (en) 2015-03-02 2018-01-31 Адверум Байотекнолоджиз, Инк. COMPOSITIONS AND METHODS OF INTRAVITREAL DELIVERY OF POLYNUCLEOTIDES IN RETCHEMBALS
HUE051491T2 (en) * 2015-03-06 2021-03-01 Massachusetts Eye & Ear Infirmary Gene augmentation therapies for inherited retinal degeneration caused by mutations in the prpf31 gene
AU2016235163B2 (en) 2015-03-24 2022-03-24 The Regents Of The University Of California Adeno-associated virus variants and methods of use thereof
WO2016179644A1 (en) * 2015-05-08 2016-11-17 Children's Medical Research Institute Promoters for expression of heterologous genes
JP6929230B2 (en) * 2015-05-14 2021-09-01 セント ジュード チルドレンズ リサーチ ホスピタル インコーポレイテッド Nucleic acid molecules containing spacers and methods of their use
US10016514B2 (en) 2015-05-15 2018-07-10 New Hope Research Foundation Polynucleotides, vectors and methods for insertion and expression of transgenes
CA3001594A1 (en) * 2015-10-14 2017-04-20 Audentes Therapeutics, Inc. Nucleic acid molecules containing spacers and methods of use thereof
WO2017075335A1 (en) 2015-10-28 2017-05-04 Voyager Therapeutics, Inc. Regulatable expression using adeno-associated virus (aav)
GB201519086D0 (en) * 2015-10-28 2015-12-09 Syncona Partners Llp Gene Therapy
US10898586B2 (en) 2015-12-03 2021-01-26 Friedrich Miescher Institute For Biomedical Research SynP161, a promoter for the specific expression of genes in rod photoreceptors
GB2545763A (en) 2015-12-23 2017-06-28 Adverum Biotechnologies Inc Mutant viral capsid libraries and related systems and methods
RU2744860C2 (en) 2015-12-30 2021-03-16 Кодиак Сайенсиз Инк. Antibodies and their conjugates
JP2019515027A (en) * 2016-04-15 2019-06-06 レジェンクスバイオ インコーポレーテッド Treatment of eye disease with post-translationally modified fully human anti-VEGF Fab
EP3452103A1 (en) * 2016-04-15 2019-03-13 The Trustees Of The University Of Pennsylvania Compositions for treatment of wet age-related macular degeneration
WO2017189964A2 (en) 2016-04-29 2017-11-02 Voyager Therapeutics, Inc. Compositions for the treatment of disease
WO2017189959A1 (en) 2016-04-29 2017-11-02 Voyager Therapeutics, Inc. Compositions for the treatment of disease
SG11201809532QA (en) * 2016-05-03 2018-11-29 Univ Wayne State Method of enhancing viral-mediated gene delivery in the eye using proteosome inhibitors
IL302748A (en) 2016-05-18 2023-07-01 Voyager Therapeutics Inc Modulatory polynucleotides
EP3458589A4 (en) 2016-05-18 2020-01-01 Voyager Therapeutics, Inc. Compositions and methods of treating huntington's disease
PT3472317T (en) 2016-06-16 2022-06-27 Adverum Biotechnologies Inc Compositions and methods for reducing ocular neovascularization
EP3471780B1 (en) 2016-06-16 2020-10-28 Adverum Biotechnologies, Inc. Treatment of amd using aav2 variant with aflibercept
KR20230039779A (en) 2016-07-29 2023-03-21 더 리젠츠 오브 더 유니버시티 오브 캘리포니아 Adeno-associated virus virions with variant capsid and methods of use thereof
CN110650673B (en) 2016-08-30 2024-04-09 加利福尼亚大学董事会 Methods for biomedical targeting and delivery and devices and systems for practicing the methods
US11192925B2 (en) 2016-10-19 2021-12-07 Adverum Biotechnologies, Inc. Modified AAV capsids and uses thereof
CN107058315B (en) * 2016-12-08 2019-11-08 上海优卡迪生物医药科技有限公司 Strike the siRNA for subtracting people PD-1, recombinant expression CAR-T carrier and its construction method and application
IL269363B2 (en) * 2017-03-16 2024-02-01 Lineage Cell Therapeutics Inc Methods for measuring therapeutic effects of retinal disease therapies
NZ756504A (en) * 2017-03-17 2023-11-24 Adverum Biotechnologies Inc Compositions and methods for enhanced gene expression
MX2019013172A (en) 2017-05-05 2020-09-07 Voyager Therapeutics Inc Compositions and methods of treating huntington's disease.
WO2018204786A1 (en) 2017-05-05 2018-11-08 Voyager Therapeutics, Inc. Compositions and methods of treating amyotrophic lateral sclerosis (als)
JOP20190269A1 (en) 2017-06-15 2019-11-20 Voyager Therapeutics Inc Aadc polynucleotides for the treatment of parkinson's disease
US20210228738A1 (en) 2017-07-17 2021-07-29 INSERM (Institut National de la Santé et de la Recherche Médicale) Compositions and methods for increasing or enhancing transduction of gene therapy vectors and for removing or reducing immunoglobulins
WO2019018342A1 (en) 2017-07-17 2019-01-24 Voyager Therapeutics, Inc. Trajectory array guide system
US11680249B2 (en) 2017-08-28 2023-06-20 The Regents Of The University Of California Adeno-associated virus capsid variants and methods of use thereof
JP2020535184A (en) * 2017-09-27 2020-12-03 レジェンクスバイオ インコーポレーテッド Treatment of eye diseases with post-translationally modified fully human anti-VEGF Fab
CA3077426A1 (en) 2017-10-16 2019-04-25 Voyager Therapeutics, Inc. Treatment of amyotrophic lateral sclerosis (als)
WO2019079242A1 (en) 2017-10-16 2019-04-25 Voyager Therapeutics, Inc. Treatment of amyotrophic lateral sclerosis (als)
KR102205830B1 (en) * 2017-10-26 2021-01-21 주식회사 큐로진생명과학 Pharmaceutical Composition for Treating Macular Degeneration Containing AAV Including cDNA of Soluble VEGFR Variant
EP3727468A4 (en) 2017-12-19 2021-09-22 Akouos, Inc. Aav-mediated delivery of therapeutic antibodies to the inner ear
US10610606B2 (en) * 2018-02-01 2020-04-07 Homology Medicines, Inc. Adeno-associated virus compositions for PAH gene transfer and methods of use thereof
WO2019173434A1 (en) 2018-03-06 2019-09-12 Voyager Therapeutics, Inc. Insect cell manufactured partial self-complementary aav genomes
SG11202009914SA (en) * 2018-05-08 2020-11-27 Rutgers The State University Of New Jersey Aav-compatible laminin-linker polymerization proteins
EP3793615A2 (en) 2018-05-16 2021-03-24 Voyager Therapeutics, Inc. Directed evolution of aav to improve tropism for cns
WO2019222441A1 (en) 2018-05-16 2019-11-21 Voyager Therapeutics, Inc. Aav serotypes for brain specific payload delivery
JP2021529513A (en) 2018-07-02 2021-11-04 ボイジャー セラピューティクス インコーポレイテッドVoyager Therapeutics,Inc. Treatment of amyotrophic lateral sclerosis and spinal cord-related disorders
JP2021530548A (en) 2018-07-24 2021-11-11 ボイジャー セラピューティクス インコーポレイテッドVoyager Therapeutics, Inc. Systems and methods for producing gene therapy products
TW202035689A (en) 2018-10-04 2020-10-01 美商航海家醫療公司 Methods for measuring the titer and potency of viral vector particles
WO2020112853A1 (en) 2018-11-28 2020-06-04 Genascence Corporation Methods and compositions for treating osteoarthritis
WO2020136384A1 (en) * 2018-12-28 2020-07-02 Constable Ian Jeffery Methods of retinal administration
EP3911410A1 (en) 2019-01-18 2021-11-24 Voyager Therapeutics, Inc. Methods and systems for producing aav particles
EP3934698A1 (en) 2019-03-04 2022-01-12 Adverum Biotechnologies, Inc. Sequential intravitreal administration of aav gene therapy to contralateral eyes
TW202106699A (en) 2019-04-26 2021-02-16 美商愛德維仁生物科技公司 Variant aav capsids for intravitreal delivery
EP3962536A1 (en) 2019-04-29 2022-03-09 Voyager Therapeutics, Inc. Systems and methods for producing baculoviral infected insect cells (biics) in bioreactors
WO2021030125A1 (en) 2019-08-09 2021-02-18 Voyager Therapeutics, Inc. Cell culture medium for use in producing gene therapy products in bioreactors
TW202122582A (en) 2019-08-26 2021-06-16 美商航海家醫療公司 Controlled expression of viral proteins
CN114728132A (en) * 2019-09-20 2022-07-08 梅拉格特克斯治疗学股份有限公司 Injection system and method of use
CN112552410A (en) * 2019-09-26 2021-03-26 三生国健药业(上海)股份有限公司 Antibody fusion protein, preparation method thereof and application thereof in anti-tumor
CN114786731A (en) 2019-10-10 2022-07-22 科达制药股份有限公司 Methods of treating ocular disorders
KR102505262B1 (en) * 2019-12-04 2023-03-03 (주) 씨드모젠 Pharmaceutical Composition for Treating Macular Degeneration Containing AAV Including cDNA of Soluble VEGFR-1 Variant
EP4192514A1 (en) 2020-08-06 2023-06-14 Voyager Therapeutics, Inc. Cell culture medium for use in producing gene therapy products in bioreactors
US20220267795A1 (en) * 2021-02-24 2022-08-25 Kinase Pharma Inc. Compositions and methods for regulating production of an angiogensis inhibitor
WO2022187548A1 (en) 2021-03-03 2022-09-09 Voyager Therapeutics, Inc. Controlled expression of viral proteins
WO2022187473A2 (en) 2021-03-03 2022-09-09 Voyager Therapeutics, Inc. Controlled expression of viral proteins
BR112023024375A2 (en) 2021-05-28 2024-02-15 Shanghai Regenelead Therapies Co Ltd RECOMBINANT ADENO-ASSOCIATED VIRUS HAVING VARIANT CAPSID AND ITS APPLICATION
WO2023206134A1 (en) * 2022-04-27 2023-11-02 Beijing Sightnovo Medical Technology Co., Ltd Compositions and methods for eye diseases
WO2024054983A1 (en) 2022-09-08 2024-03-14 Voyager Therapeutics, Inc. Controlled expression of viral proteins

Family Cites Families (120)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US4522811A (en) 1982-07-08 1985-06-11 Syntex (U.S.A.) Inc. Serial injection of muramyldipeptides and liposomes enhances the anti-infective activity of muramyldipeptides
US4874237A (en) 1987-05-07 1989-10-17 Lions Eye Inst. Of Western Australia Electroretinogram apparatus
JP2755817B2 (en) 1988-11-14 1998-05-25 アメリカ合衆国 Parvovirus capsid
FR2643252B1 (en) 1989-02-21 1991-06-07 Technomed Int Sa APPARATUS FOR THE SELECTIVE DESTRUCTION OF CELLS INCLUDING SOFT TISSUES AND BONES WITHIN THE BODY OF A LIVING BODY BY IMPLOSION OF GAS BUBBLES
US5112946A (en) 1989-07-06 1992-05-12 Repligen Corporation Modified pf4 compositions and methods of use
US5436146A (en) 1989-09-07 1995-07-25 The Trustees Of Princeton University Helper-free stocks of recombinant adeno-associated virus vectors
US6379885B1 (en) 1989-09-14 2002-04-30 Rijksuniversiteit Te Leiden Human parvovirus B19 proteins and virus-like particles, their production and their use in diagnostic assays and vaccines
DE69128037T2 (en) 1990-11-13 1998-05-07 Immunex Corp BIFUNCTIONAL SELECTABLE FUSION GENES
US5383917A (en) 1991-07-05 1995-01-24 Jawahar M. Desai Device and method for multi-phase radio-frequency ablation
ATE281469T1 (en) 1993-03-25 2004-11-15 Merck & Co Inc INHIBITOR OF THE GROWTH FACTOR FOR VASCULAR ENDOTHELIAL CELLS
EP0804590A1 (en) 1993-05-21 1997-11-05 Targeted Genetics Corporation Bifunctional selectable fusion genes based on the cytosine deaminase (cd) gene
US5814618A (en) 1993-06-14 1998-09-29 Basf Aktiengesellschaft Methods for regulating gene expression
AU1925195A (en) 1994-02-22 1995-09-04 Dana-Farber Cancer Institute Nucleic acid delivery system, method of synthesis and uses thereof
US6551618B2 (en) 1994-03-15 2003-04-22 University Of Birmingham Compositions and methods for delivery of agents for neuronal regeneration and survival
FR2718150B1 (en) 1994-03-29 1996-04-26 Rhone Poulenc Rorer Sa Recombinant viruses, preparation and use in gene therapy.
US5639725A (en) 1994-04-26 1997-06-17 Children's Hospital Medical Center Corp. Angiostatin protein
US5527533A (en) * 1994-10-27 1996-06-18 Board Of Trustees Of The University Of Illinois Method of retarding and ameliorating central nervous system and eye damage
US20020168342A1 (en) 1994-11-03 2002-11-14 Cell Genesys, Inc. Novel adenoviral vectors, packaging cell lines, recombinant adenoviruses and methods
US6093570A (en) 1995-06-07 2000-07-25 The University Of North Carolina At Chapel Hill Helper virus-free AAV production
US6040183A (en) 1995-06-07 2000-03-21 University Of North Carloina At Chapel Hill Helper virus-free AAV production
US6013516A (en) 1995-10-06 2000-01-11 The Salk Institute For Biological Studies Vector and method of use for nucleic acid delivery to non-dividing cells
US5641749A (en) 1995-11-29 1997-06-24 Amgen Inc. Method for treating retinal ganglion cell injury using glial cell line-derived neurothrophic factor (GDNF) protein product
JP3345428B2 (en) * 1996-08-20 2002-11-18 ザ リージェンツ オブ ザ ユニバーシティ オブ カリフォルニア Treatment of the eye using the synthetic thyroid forman composition
AU738806B2 (en) 1996-09-24 2001-09-27 Merck & Co., Inc. Gene therapy for inhibition of angiogenesis
FR2756297B1 (en) 1996-11-22 1999-01-08 Centre Nat Rech Scient PROCESS FOR PRODUCING RECOMBINANT VIRUSES
US6153436A (en) 1997-01-10 2000-11-28 The Board Of Trustees Of The University Of Arkansas Method of gene delivery using wildtype adeno associated viral (AAV) vectors with insertions
DE69824859T2 (en) 1997-04-14 2005-08-04 Cell Genesys, Inc., Foster City METHODS OF INCREASING THE EFFICIENCY OF RECOMBINANT AAV PRODUCTS
EP1173191A4 (en) 1997-05-13 2004-12-01 Univ California Novel antiangiogenic peptide agents and their therapeutic and diagnostic use
US6458157B1 (en) * 1997-08-04 2002-10-01 Suaning Gregg Joergen Retinal stimulator
CA2303768C (en) * 1997-09-19 2009-11-24 The Trustees Of The University Of Pennsylvania Methods and vector constructs useful for production of recombinant aav
JPH11100327A (en) 1997-09-26 1999-04-13 Toray Ind Inc Therapeutic agent for retinal degeneration
CA2303401A1 (en) 1997-10-01 1999-04-08 G.D. Searle & Co. Fusion proteins comprising an angiostatin moiety and their use in anti-tumor treatment
US5994136A (en) 1997-12-12 1999-11-30 Cell Genesys, Inc. Method and means for producing high titer, safe, recombinant lentivirus vectors
WO1999036511A2 (en) 1998-01-16 1999-07-22 Chiron Corporation Feline immunodeficiency virus gene therapy vectors
JP3764047B2 (en) 1998-03-12 2006-04-05 ジェネンテック・インコーポレーテッド Method for preventing retinal neuron death and treating eye diseases
US6593133B1 (en) 1998-07-06 2003-07-15 Nsgene A/S Neurotrophic factors
WO2000012740A2 (en) * 1998-08-28 2000-03-09 Duke University ADENOVIRUSES DELETED IN THE IVa2, 100K AND/OR PRETERMINAL PROTEIN SEQUENCES
NZ511037A (en) 1998-09-17 2005-02-25 Univ Florida Methods for treatment of degenerative retinal diseases
US20040234505A1 (en) 1998-09-23 2004-11-25 Stuart Naylor Polynucleotide constructs and uses thereof
AU3755900A (en) * 1999-03-15 2000-10-04 Chiron Corporation Use of recombinant gene delivery vectors for treating or preventing diseases of the eye
US6943153B1 (en) 1999-03-15 2005-09-13 The Regents Of The University Of California Use of recombinant gene delivery vectors for treating or preventing diseases of the eye
US7306799B2 (en) * 1999-06-08 2007-12-11 Regeneron Pharmaceuticals, Inc. Use of VEGF inhibitors for treatment of eye disorders
US7087411B2 (en) 1999-06-08 2006-08-08 Regeneron Pharmaceuticals, Inc. Fusion protein capable of binding VEGF
US7070959B1 (en) 1999-06-08 2006-07-04 Regeneron Pharmaceuticals, Inc. Modified chimeric polypeptides with improved pharmacokinetic properties
US6656136B1 (en) 1999-10-25 2003-12-02 Therus Corporation Use of focused ultrasound for vascular sealing
JP4817582B2 (en) 2000-04-17 2011-11-16 ザ・ユニバーシティー・オブ・シドニー Objective electrophysiological evaluation method and apparatus for visual function
US6329181B1 (en) 2000-08-07 2001-12-11 Neurologix, Inc. Helper functions for recombinant vector production
CA2437563C (en) * 2001-02-06 2010-03-23 Qlt Inc. Photodynamic therapy of occult age-related macular degeneration
EP1372552B1 (en) 2001-03-27 2017-03-01 WaveLight GmbH Device for the treatment of tissues of the eye and for diagnosis thereof
CA2442670A1 (en) 2001-04-13 2002-10-24 The Trustees Of The University Of Pennsylvania Method of treating or retarding the development of blindness
JP2002363107A (en) 2001-06-04 2002-12-18 Noriyuki Azuma Method for restoring color vision of animal with color vision insufficiency
ATE527347T1 (en) 2001-08-02 2011-10-15 Inst Clayton De La Rech METHODS AND COMPOSITIONS RELATED TO IMPROVED LENTIVIRUS VECTOR PRODUCTION SYSTEMS
US6723551B2 (en) 2001-11-09 2004-04-20 The United States Of America As Represented By The Department Of Health And Human Services Production of adeno-associated virus in insect cells
WO2003080648A2 (en) 2002-03-20 2003-10-02 University Of Florida Research Foundation, Inc. Raav vector compositions and methods for the treatment of choroidal neovascularization
WO2003092594A2 (en) 2002-04-30 2003-11-13 Duke University Adeno-associated viral vectors and methods for their production from hybrid adenovirus and for their use
US8304233B2 (en) 2002-06-04 2012-11-06 Poetic Genetics, Llc Methods of unidirectional, site-specific integration into a genome, compositions and kits for practicing the same
WO2004020600A2 (en) 2002-08-28 2004-03-11 University Of Florida Modified aav
GB0220467D0 (en) 2002-09-03 2002-10-09 Oxford Biomedica Ltd Composition
WO2004079332A2 (en) * 2003-03-04 2004-09-16 National Institute Of Advanced Industrial Science And Technology Composition and method for increasing efficiency of introduction of target substance into cell
US9233131B2 (en) 2003-06-30 2016-01-12 The Regents Of The University Of California Mutant adeno-associated virus virions and methods of use thereof
US9441244B2 (en) 2003-06-30 2016-09-13 The Regents Of The University Of California Mutant adeno-associated virus virions and methods of use thereof
WO2005072364A2 (en) 2004-01-27 2005-08-11 University Of Florida A modified baculovirus expression system for production of pseudotyped raav vector
WO2006047325A1 (en) * 2004-10-21 2006-05-04 Genentech, Inc. Method for treating intraocular neovascular diseases
DK1809750T3 (en) 2004-11-08 2012-06-25 Chromagenics Bv Selection of host cells expressing protein at high levels
US7922670B2 (en) 2005-02-24 2011-04-12 Warren Jones System and method for quantifying and mapping visual salience
CN104293835B (en) 2005-04-07 2017-07-04 宾夕法尼亚大学托管会 The method for strengthening function of gland related viral vector
US20060234347A1 (en) * 2005-04-13 2006-10-19 Harding Thomas C Targeting multiple angiogenic pathways for cancer therapy using soluble tyrosine kinase receptors
DK1945779T3 (en) 2005-10-20 2013-06-03 Uniqure Ip Bv Enhanced AAV vectors generated in insect cells
EP1981548A4 (en) 2006-01-20 2010-03-24 Univ North Carolina Enhanced production of infectious parvovirus vectors in insect cells
US20070190028A1 (en) 2006-02-13 2007-08-16 Jihong Qu Method and apparatus for heat or electromagnetic control of gene expression
US8118752B2 (en) 2006-02-16 2012-02-21 The Board Of Trustees Of The University Of Illinois Apparatus and methods for mapping retinal function
US7384145B2 (en) 2006-02-16 2008-06-10 The Board Of Trustees Of The University Of Illinois Mapping retinal function using corneal electrode array
US8216575B2 (en) * 2006-03-31 2012-07-10 Chengdu Kanghong Biotechnologies Co., Ltd. Inhibition of neovascularization with a soluble chimeric protein comprising VEGF FLT-1 and KDR domains
AU2007247426B2 (en) * 2006-05-04 2012-03-08 Fondation Ophthalmologique Adolf De Rothschild Combination comprising a VEGF inhibitor and a serine protease for treating neovascular diseases
EP2029746B1 (en) * 2006-06-12 2012-07-04 Exegenics, Inc., D/b/a Opko Health, Inc. Compositions and methods for sirna inhibition of angiogenesis
GB0612096D0 (en) 2006-06-19 2006-07-26 Greater Glasgow Nhs Board Functional imaging of the retina
EP3023500B1 (en) 2006-06-21 2020-02-12 uniQure IP B.V. Insect cells for the production of aav vectors
CN101313366A (en) 2006-06-27 2008-11-26 株式会社爱德万测试 Semiconductor testing apparatus and semiconductor memory testing method
WO2008024998A2 (en) 2006-08-24 2008-02-28 Virovek, Inc. Expression in insect cells of genes with overlapping open reading frames, methods and compositions therefor
AU2008215181A1 (en) 2007-02-16 2008-08-21 Objectivision Limited Stimulus method for multifocal visual evoked potential
EP1995309A1 (en) * 2007-05-21 2008-11-26 Vivalis Recombinant protein production in avian EBx® cells
US10696983B2 (en) 2007-05-30 2020-06-30 The Trustees Of The University Of Pennsylvania Method for transducing cells with primary cilia
US8540369B2 (en) 2007-08-16 2013-09-24 The Research Foundation Of State University Of New York Led variable light source
US8518037B2 (en) 2007-10-30 2013-08-27 Boston Scientific Scimed, Inc. Radiofrequency ablation device
US20110053274A1 (en) * 2007-11-30 2011-03-03 Scarab Genomics Llc Lac expression system
CA2715924C (en) 2008-02-19 2021-01-12 Andrew Christian BAKKER Optimisation of expression of parvoviral rep and cap proteins in insect cells
BRPI0908496A2 (en) 2008-02-20 2019-01-15 Genzyme Corp angiogenesis inhibition
US20100081707A1 (en) * 2008-02-21 2010-04-01 Ali Robin R Devices and methods for delivering polynucleotides into retinal cells of the macula and fovea
ITFI20080081A1 (en) 2008-04-18 2009-10-19 Strumenti Oftalmici C S O S R PROCEDURE AND SYSTEM FOR THE RECORDING OF MULTIFOCAL ERG, PERG AND VEP ELECTROFUNCTIONAL REPLIES IN REAL TIME
US8632764B2 (en) 2008-04-30 2014-01-21 University Of North Carolina At Chapel Hill Directed evolution and in vivo panning of virus vectors
ES2330826B1 (en) 2008-06-04 2010-07-26 Proyecto De Biomedicina Cima, S.L. HIGH CAPACITY ADENOVIRUS PACKING SYSTEM.
ES2742180T3 (en) 2009-03-04 2020-02-13 Deutsches Krebsforsch Assembly activating protein (AAP) and its use for the manufacture of parvovirus particles consisting essentially of VP3
US8679837B2 (en) 2009-04-02 2014-03-25 University Of Florida Research Foundation, Inc. Inducible system for highly efficient production of recombinant Adeno-associated virus (rAAV) vectors
TWI466158B (en) 2009-07-03 2014-12-21 Univ Lunghwa Sci & Technology Plasma measurement device, plasma system, and method for measuring plasma characteristics
EP2287323A1 (en) * 2009-07-31 2011-02-23 Association Institut de Myologie Widespread gene delivery to the retina using systemic administration of AAV vectors
EP2292781A1 (en) 2009-08-17 2011-03-09 Genethon Baculovirus-based production of biopharmaceuticals free of contaminating baculoviral virions
US20120172419A1 (en) 2009-09-15 2012-07-05 Medical College Of Wisconsin Research Foundation Inc. Reagents and methods for modulating cone photoreceptor activity
US20110270256A1 (en) 2009-09-24 2011-11-03 Medicinelodge, Inc. Dba Imds Co-Innovation Surgical rasp with radiofrequency ablation
US9169494B2 (en) 2010-01-12 2015-10-27 The University Of North Carolina At Chapel Hill Restrictive inverted terminal repeats for viral vectors
EP2545165B1 (en) 2010-03-11 2020-07-29 uniQure IP B.V. Mutated rep encoding sequences for use in aav production
SG10201908848RA (en) * 2010-03-29 2019-10-30 Univ Pennsylvania Pharmacologically induced transgene ablation system
WO2011122950A1 (en) 2010-04-01 2011-10-06 Amsterdam Molecular Therapeutics (Amt) Ip B.V. Monomeric duplex aav vectors
US9102718B2 (en) * 2010-04-30 2015-08-11 Lpath, Inc. Anti-S1P antibody treatment of patients with ocular disease
CN201704771U (en) 2010-04-30 2011-01-12 陈福环 Water tank free water-saving flush toilet
US8663624B2 (en) 2010-10-06 2014-03-04 The Regents Of The University Of California Adeno-associated virus virions with variant capsid and methods of use thereof
US20110052678A1 (en) * 2010-11-05 2011-03-03 Shantha Totada R Method for treating age related macular degeneration
CA2817751C (en) 2010-11-16 2019-04-30 Excelimmune, Inc. Methods for producing recombinant proteins
CA2823890C (en) 2011-01-07 2020-10-06 Applied Genetic Technologies Corporation Promoters, expression cassettes, vectors, kits, and methods for the treatment of achromatopsia and other diseases
LT3693025T (en) 2011-04-22 2022-02-10 The Regents Of The University Of California Adeno-associated virus virions with variant capsid and methods of use thereof
US9375491B2 (en) 2011-10-28 2016-06-28 University Of Florida Research Foundation, Inc. Chimeric promoter for cone photoreceptor targeted gene therapy
TWI775096B (en) 2012-05-15 2022-08-21 澳大利亞商艾佛蘭屈澳洲私營有限公司 Treatment of amd using aav sflt-1
US20150111275A1 (en) 2012-06-11 2015-04-23 Daniel V. Palanker Optical regulation of gene expression in the retina
WO2014207190A1 (en) 2013-06-28 2014-12-31 INSERM (Institut National de la Santé et de la Recherche Médicale) Methods for expressing a polynucleotide of interest in the retina of a subject
US20150025939A1 (en) 2013-07-18 2015-01-22 Somnath Chatterjee Company Centric Social Media Platfonn for Content Sharing aud Tracking
EP3561062A1 (en) 2013-09-13 2019-10-30 California Institute of Technology Selective recovery
US20160369298A1 (en) 2013-09-26 2016-12-22 University Of Florida Research Foundation, Inc. Synthetic combinatorial aav capsid library for targeted gene therapy
US10308957B2 (en) 2014-03-04 2019-06-04 University Of Florida Research Foundation, Inc. rAAV vectors and methods for transduction of photoreceptors and RPE cells
EP3800191A1 (en) 2014-03-17 2021-04-07 Adverum Biotechnologies, Inc. Compositions and methods for enhanced gene expression in cone cells
EA201791939A1 (en) 2015-03-02 2018-01-31 Адверум Байотекнолоджиз, Инк. COMPOSITIONS AND METHODS OF INTRAVITREAL DELIVERY OF POLYNUCLEOTIDES IN RETCHEMBALS
GB2545763A (en) 2015-12-23 2017-06-28 Adverum Biotechnologies Inc Mutant viral capsid libraries and related systems and methods

Also Published As

Publication number Publication date
LT3501549T (en) 2021-10-11
CN104994882A (en) 2015-10-21
ES2890813T3 (en) 2022-01-24
EP2849802A4 (en) 2016-01-20
JP6466322B2 (en) 2019-02-06
HUE056327T2 (en) 2022-02-28
EP2849802B1 (en) 2023-12-20
BR112014028633A8 (en) 2020-01-21
WO2013173129A3 (en) 2014-01-30
JP2021045170A (en) 2021-03-25
JP2019071908A (en) 2019-05-16
KR20200119276A (en) 2020-10-19
EP2849802A2 (en) 2015-03-25
US20220111015A1 (en) 2022-04-14
KR102218067B1 (en) 2021-02-22
MX362452B (en) 2019-01-18
AU2018211212B2 (en) 2020-10-15
DK3501549T3 (en) 2021-09-13
TW201828951A (en) 2018-08-16
TWI702955B (en) 2020-09-01
CN115337407A (en) 2022-11-15
WO2013173129A2 (en) 2013-11-21
US20140341977A1 (en) 2014-11-20
TW202103711A (en) 2021-02-01
TW201408307A (en) 2014-03-01
KR102154225B1 (en) 2020-09-11
US20140371438A1 (en) 2014-12-18
RU2014150340A (en) 2016-07-10
JP6667486B2 (en) 2020-03-18
KR20210021111A (en) 2021-02-24
CA2873628A1 (en) 2013-11-21
IL235679B (en) 2021-04-29
BR112014028633A2 (en) 2017-08-01
US20150004101A1 (en) 2015-01-01
JP2015523060A (en) 2015-08-13
CY1124495T1 (en) 2022-07-22
SG11201407548UA (en) 2014-12-30
CA2873628C (en) 2020-11-24
EP3501549A1 (en) 2019-06-26
TWI698240B (en) 2020-07-11
AU2013263159B2 (en) 2018-05-31
SG10201609412QA (en) 2017-01-27
PL3501549T3 (en) 2022-01-17
US10004788B2 (en) 2018-06-26
MX2019000586A (en) 2021-06-15
AU2013263159A1 (en) 2015-01-15
ZA201409025B (en) 2019-04-24
US20180125948A1 (en) 2018-05-10
SI3501549T1 (en) 2021-11-30
JP2018015008A (en) 2018-02-01
RS62359B1 (en) 2021-10-29
HK1207568A1 (en) 2016-02-05
MX2014013933A (en) 2015-06-03
IL281833A (en) 2021-05-31
TWI775096B (en) 2022-08-21
JP2022106929A (en) 2022-07-20
US20180311319A1 (en) 2018-11-01
US9943573B2 (en) 2018-04-17
HRP20211453T1 (en) 2021-12-24
US20130323302A1 (en) 2013-12-05
KR20150014965A (en) 2015-02-09
NZ702637A (en) 2017-05-26
AU2018211212A1 (en) 2018-08-16
EP3501549B1 (en) 2021-06-23
PT3501549T (en) 2021-09-30
EP2849802C0 (en) 2023-12-20
IL235679A0 (en) 2015-02-26
NZ727516A (en) 2018-05-25

Similar Documents

Publication Publication Date Title
AU2018211212B2 (en) Treatment of amd using AAV sFlt-1
KR20170140180A (en) Middle east respiratory syndrome coronavirus immunogens, antibodies, and their use
KR20200079244A (en) Non-integrated DNA vector for genetic modification of cells
AU2016343979A1 (en) Delivery of central nervous system targeting polynucleotides
CN109069668B (en) Gene therapy for eye diseases
KR20200120649A (en) Non-viral DNA vectors and their use for production of antibodies and fusion proteins
KR20220006527A (en) Gene therapy for lysosomal disorders
KR20210119416A (en) Closed-ended DNA (CEDNA), and use thereof in methods of reducing the immune response associated with gene or nucleic acid therapy
KR20200023280A (en) Gene therapy for neuronal serolipolithiasis
KR20230019450A (en) Encapsulated RNA Replicons and Methods of Use
KR20230117179A (en) Anti-VEGF antibody constructs and related methods for treating symptoms associated with acoustic schwannoma
KR20210025122A (en) Neuropathy treatment with IGF-1-encoding DNA constructs and HGF-encoding DNA constructs
KR20230003477A (en) Non-viral DNA vectors and their use for expressing Factor IX therapeutics
KR20210151785A (en) Non-viral DNA vectors and their use for expression of FVIII therapeutics
KR20210052443A (en) Treatment of neuropathy using DNA construct expressing IGF-1 isoform
KR20240037192A (en) Methods and compositions for genome integration
KR20230129431A (en) Treatment of Danon&#39;s disease
CN116157527A (en) Gene therapy for lysosomal disorders
CN116568814A (en) Supported antibodies and uses thereof
CN116437968A (en) Gene therapy for neurodegenerative disorders
KR20210141997A (en) Expression constructs for genetic modification of cells
RU2812852C2 (en) Non-viral dna vectors and options for their use for expression of therapeutic agent based on factor viii (fviii)
US20230364206A1 (en) Gene therapy for ocular manifestations of cln2 disease
KR20210057720A (en) CLRN1-related hearing loss and/or vision loss treatment method
RU2800914C2 (en) Non-viral dna vectors and their use for the production of antibodies and fusion proteins

Legal Events

Date Code Title Description
MK4 Application lapsed section 142(2)(d) - no continuation fee paid for the application