AU2016347631B2 - Methods and systems for analyzing tissue quality using mid-infrared spectroscopy - Google Patents

Methods and systems for analyzing tissue quality using mid-infrared spectroscopy Download PDF

Info

Publication number
AU2016347631B2
AU2016347631B2 AU2016347631A AU2016347631A AU2016347631B2 AU 2016347631 B2 AU2016347631 B2 AU 2016347631B2 AU 2016347631 A AU2016347631 A AU 2016347631A AU 2016347631 A AU2016347631 A AU 2016347631A AU 2016347631 B2 AU2016347631 B2 AU 2016347631B2
Authority
AU
Australia
Prior art keywords
sample
fixation
spectrum
fixed
quality
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
AU2016347631A
Other languages
English (en)
Other versions
AU2016347631A1 (en
Inventor
Daniel Bauer
David Chafin
Niels KROEGER-LUI
Michael Otter
Wolfgang Petrich
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
F Hoffmann La Roche AG
Ventana Medical Systems Inc
Original Assignee
F Hoffmann La Roche AG
Ventana Medical Systems Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by F Hoffmann La Roche AG, Ventana Medical Systems Inc filed Critical F Hoffmann La Roche AG
Publication of AU2016347631A1 publication Critical patent/AU2016347631A1/en
Application granted granted Critical
Publication of AU2016347631B2 publication Critical patent/AU2016347631B2/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
    • G01N21/25—Colour; Spectral properties, i.e. comparison of effect of material on the light at two or more different wavelengths or wavelength bands
    • G01N21/31—Investigating relative effect of material at wavelengths characteristic of specific elements or molecules, e.g. atomic absorption spectrometry
    • G01N21/39—Investigating relative effect of material at wavelengths characteristic of specific elements or molecules, e.g. atomic absorption spectrometry using tunable lasers
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30—Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00—Sampling; Preparing specimens for investigation
    • G01N1/28—Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30—Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • G01N2001/305—Fixative compositions
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/17—Systems in which incident light is modified in accordance with the properties of the material investigated
    • G01N21/25—Colour; Spectral properties, i.e. comparison of effect of material on the light at two or more different wavelengths or wavelength bands
    • G01N21/31—Investigating relative effect of material at wavelengths characteristic of specific elements or molecules, e.g. atomic absorption spectrometry
    • G01N21/39—Investigating relative effect of material at wavelengths characteristic of specific elements or molecules, e.g. atomic absorption spectrometry using tunable lasers
    • G01N2021/396—Type of laser source
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00—Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/75—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated
    • G01N2021/757—Systems in which material is subjected to a chemical reaction, the progress or the result of the reaction being investigated using immobilised reagents
    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N2201/00—Features of devices classified in G01N21/00
    • G01N2201/12—Circuits of general importance; Signal processing
    • G01N2201/129—Using chemometrical methods

Landscapes

  • Physics & Mathematics (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Pathology (AREA)
  • Chemical & Material Sciences (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • General Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Optics & Photonics (AREA)
  • Molecular Biology (AREA)
  • Biomedical Technology (AREA)
  • Engineering & Computer Science (AREA)
  • Investigating Or Analysing Materials By Optical Means (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
AU2016347631A 2015-10-28 2016-10-28 Methods and systems for analyzing tissue quality using mid-infrared spectroscopy Active AU2016347631B2 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US201562247609P 2015-10-28 2015-10-28
US62/247,609 2015-10-28
PCT/EP2016/076130 WO2017072320A1 (en) 2015-10-28 2016-10-28 Methods and systems for analyzing tissue quality using mid-infrared spectroscopy

Publications (2)

Publication Number Publication Date
AU2016347631A1 AU2016347631A1 (en) 2018-04-26
AU2016347631B2 true AU2016347631B2 (en) 2019-03-28

Family

ID=57233419

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2016347631A Active AU2016347631B2 (en) 2015-10-28 2016-10-28 Methods and systems for analyzing tissue quality using mid-infrared spectroscopy

Country Status (6)

Country Link
US (1) US20190369017A1 (https=)
EP (1) EP3368885B1 (https=)
JP (1) JP6676160B2 (https=)
AU (1) AU2016347631B2 (https=)
CA (1) CA3001763C (https=)
WO (1) WO2017072320A1 (https=)

Families Citing this family (10)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN112384786B (zh) * 2018-05-09 2024-08-23 国立研究开发法人量子科学技术研究开发机构 组织识别装置、组织识别系统、组织识别方法及记录介质
WO2020022394A1 (en) * 2018-07-24 2020-01-30 Sony Corporation Information processing apparatus and microscope for separating the fluorescence of a fluorescent reageant from the autofluorescence of a specimen
JP7520107B2 (ja) * 2019-08-28 2024-07-22 ベンタナ メディカル システムズ， インコーポレイテッド 振動分光法を使用して検体固定の持続時間および品質を評価するためのシステムおよび方法
CN114303203A (zh) * 2019-08-28 2022-04-08 文塔纳医疗系统公司 使用振动光谱法评估抗原修复和靶标修复进展定量
EP4022286A1 (en) * 2019-08-28 2022-07-06 Ventana Medical Systems, Inc. Label-free assessment of biomarker expression with vibrational spectroscopy
US11460400B2 (en) * 2020-07-07 2022-10-04 Sakura Finetek U.S.A., Inc. Use of IR spectroscopy to evaluate penetration of reagents into biological specimen
CN113030007B (zh) * 2021-02-10 2023-04-18 河南中烟工业有限责任公司 基于相似度学习算法快速检验烟用香精质量稳定性的方法
EP4437549A4 (en) * 2021-11-23 2025-09-24 Agilent Technologies Inc DIGITAL ANALYSIS OF PREANALYTICAL FACTORS IN TISSUES USED FOR HISTOLOGICAL STAINING
CN121693762A (zh) * 2023-08-16 2026-03-17 文塔纳医疗系统公司 用以确定形态学染色的生物学样本的固定状态的深度学习模型
CN119360129B (zh) * 2024-12-23 2025-03-21 浙江省测绘科学技术研究院 页岩油气井场分类方法和页岩油气开发活动监测方法

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2011163624A1 (en) * 2010-06-25 2011-12-29 Cellmark Theranostics, Llc Method for analyzing biological specimens by spectral imaging
US20120270293A1 (en) * 2009-12-07 2012-10-25 Wei-Sing Chu Standardization of tissue specimen preservation by ultrasound and temperature control

Family Cites Families (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20040253649A1 (en) * 1998-10-21 2004-12-16 Smith Steven J. Protein quantitation with cell imaging densitometry
US20010055799A1 (en) * 1998-12-15 2001-12-27 David Baunoch Method and apparatus for automated reprocessing of tissue samples
US20060249668A1 (en) * 2005-05-05 2006-11-09 Palo Alto Research Center Incorporated Automatic detection of quality spectra
CA2604317C (en) * 2007-08-06 2017-02-28 Historx, Inc. Methods and system for validating sample images for quantitative immunoassays

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20120270293A1 (en) * 2009-12-07 2012-10-25 Wei-Sing Chu Standardization of tissue specimen preservation by ultrasound and temperature control
WO2011163624A1 (en) * 2010-06-25 2011-12-29 Cellmark Theranostics, Llc Method for analyzing biological specimens by spectral imaging

Also Published As

Publication number Publication date
EP3368885A1 (en) 2018-09-05
JP6676160B2 (ja) 2020-04-08
US20190369017A1 (en) 2019-12-05
WO2017072320A1 (en) 2017-05-04
CA3001763C (en) 2020-10-27
AU2016347631A1 (en) 2018-04-26
EP3368885B1 (en) 2020-06-03
JP2018532116A (ja) 2018-11-01
CA3001763A1 (en) 2017-05-04

Similar Documents

Publication Publication Date Title
AU2016347631B2 (en) Methods and systems for analyzing tissue quality using mid-infrared spectroscopy
US11972859B2 (en) Computational pathology approach for retrospective analysis of tissue-based companion diagnostic driven clinical trial studies
Virkler et al. Raman spectroscopic signature of blood and its potential application to forensic body fluid identification
JP7047059B2 (ja) 画像処理のための自動アッセイ評価および正規化
Taylor et al. Quantification of immunohistochemistry—issues concerning methods, utility and semiquantitative assessment II
Verdonck et al. Characterization of human breast cancer tissues by infrared imaging
Bonta et al. A comparison of sample preparation strategies for biological tissues and subsequent trace element analysis using LA-ICP-MS
Fernandez et al. Infrared spectroscopic imaging for histopathologic recognition
Woolman et al. Optimized mass spectrometry analysis workflow with polarimetric guidance for ex vivo and in situ sampling of biological tissues
Chlipala et al. Impact of preanalytical factors during histology processing on section suitability for digital image analysis
JP7011035B2 (ja) 染色された標本画像内で細胞を検出するための自動化された方法およびシステム
Kalvala et al. Concordance between core needle biopsy and surgical excision specimens for Ki‐67 in breast cancer–a systematic review of the literature
Chen et al. Infrared metrics for fixation-free liver tumor detection
Vani et al. The importance of epitope density in selecting a sensitive positive IHC control
Ali et al. A simple model for cell type recognition using 2D-correlation analysis of FTIR images from breast cancer tissue
Dolled-Filhart et al. Automated analysis of tissue microarrays
Al-Sharji et al. Detection of oral fluid stains on common substrates using SEM and ATR–FTIR spectroscopy for forensic purposes
Saha et al. Precision of Raman spectroscopy measurements in detection of microcalcifications in breast needle biopsies
WO2016201572A1 (en) Methods of detection of steatosis
JP2021507419A (ja) 膜特徴に基づいて組織画像内で細胞を分類するためのシステム及び方法
Sompuram et al. Selecting an optimal positive IHC control for verifying antigen retrieval
Guo et al. Evaluation of Minimum‐to‐Severe Global and Macrovesicular Steatosis in Human Liver Specimens: A Portable Ambient Light‐Compatible Spectroscopic Probe
Veneroni et al. Applicability of under vacuum fresh tissue sealing and cooling to omics analysis of tumor tissues
Martinez-Marin et al. Accounting for tissue heterogeneity in infrared spectroscopic imaging for accurate diagnosis of thyroid carcinoma subtypes
Li et al. Early warning potential of banana spoilage based on 3D fluorescence data of storage room gas

Legal Events

Date Code Title Description
FGA Letters patent sealed or granted (standard patent)