AU2002218775A1 - Method for determining three-dimentional protein structure from primary protein sequence - Google Patents

Method for determining three-dimentional protein structure from primary protein sequence

Info

Publication number
AU2002218775A1
AU2002218775A1 AU2002218775A AU1877502A AU2002218775A1 AU 2002218775 A1 AU2002218775 A1 AU 2002218775A1 AU 2002218775 A AU2002218775 A AU 2002218775A AU 1877502 A AU1877502 A AU 1877502A AU 2002218775 A1 AU2002218775 A1 AU 2002218775A1
Authority
AU
Australia
Prior art keywords
sequence
alignment
query
determining
gap
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2002218775A
Other languages
English (en)
Inventor
Derek A. Debe
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
California Institute of Technology CalTech
Original Assignee
California Institute of Technology CalTech
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by California Institute of Technology CalTech filed Critical California Institute of Technology CalTech
Publication of AU2002218775A1 publication Critical patent/AU2002218775A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G01—MEASURING; TESTING
    • G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N31/00—Investigating or analysing non-biological materials by the use of the chemical methods specified in the subgroup; Apparatus specially adapted for such methods
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment
    • G16B15/20—Protein or domain folding
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B30/00—ICT specially adapted for sequence analysis involving nucleotides or amino acids
    • G16B30/10—Sequence alignment; Homology search
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B15/00—ICT specially adapted for analysing two-dimensional or three-dimensional molecular structures, e.g. structural or functional relations or structure alignment

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Health & Medical Sciences (AREA)
  • General Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Theoretical Computer Science (AREA)
  • Biophysics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Biotechnology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Evolutionary Biology (AREA)
  • Engineering & Computer Science (AREA)
  • Medical Informatics (AREA)
  • Analytical Chemistry (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Crystallography & Structural Chemistry (AREA)
  • Molecular Biology (AREA)
  • Biochemistry (AREA)
  • General Physics & Mathematics (AREA)
  • Immunology (AREA)
  • Pathology (AREA)
  • Information Retrieval, Db Structures And Fs Structures Therefor (AREA)
  • Management, Administration, Business Operations System, And Electronic Commerce (AREA)
  • Investigating Or Analysing Biological Materials (AREA)
  • Peptides Or Proteins (AREA)
  • Complex Calculations (AREA)
AU2002218775A 2000-07-12 2001-07-12 Method for determining three-dimentional protein structure from primary protein sequence Abandoned AU2002218775A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US21801600P 2000-07-12 2000-07-12
US60/218016 2000-07-12
PCT/US2001/022095 WO2002004685A1 (en) 2000-07-12 2001-07-12 Method for determining three-dimensional protein structure from primary protein sequence

Publications (1)

Publication Number Publication Date
AU2002218775A1 true AU2002218775A1 (en) 2002-01-21

Family

ID=22813417

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2002218775A Abandoned AU2002218775A1 (en) 2000-07-12 2001-07-12 Method for determining three-dimentional protein structure from primary protein sequence

Country Status (12)

Country Link
US (1) US20020150906A1 (es)
EP (1) EP1301636A4 (es)
JP (1) JP2004503038A (es)
KR (1) KR20030043908A (es)
CN (1) CN1447862A (es)
AU (1) AU2002218775A1 (es)
BR (1) BR0112448A (es)
CA (1) CA2415787A1 (es)
IL (1) IL153760A0 (es)
MX (1) MXPA03000394A (es)
WO (1) WO2002004685A1 (es)
ZA (1) ZA200300291B (es)

Families Citing this family (21)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7270969B2 (en) * 1999-05-05 2007-09-18 Phylogica Limited Methods of constructing and screening diverse expression libraries
US7803765B2 (en) * 1999-05-05 2010-09-28 Phylogica Limited Methods of constructing biodiverse gene fragment libraries and biological modulators isolated therefrom
DK2230303T3 (da) * 1999-05-05 2013-04-15 Phylogica Ltd Isolering af biologiske modulatorer fra biodiverse genfragment-biblioteker
US20060036374A1 (en) * 2000-07-12 2006-02-16 Debe Derek A Method for determining three-dimensional protein structure from primary protein sequence
US6988039B2 (en) * 2003-02-14 2006-01-17 Eidogen, Inc. Method for determining sequence alignment significance
US8024127B2 (en) 2003-02-27 2011-09-20 Lawrence Livermore National Security, Llc Local-global alignment for finding 3D similarities in protein structures
DK1754052T3 (en) * 2004-06-03 2015-09-28 Phylogica Ltd Modulators with biochemical properties
KR100598606B1 (ko) * 2004-12-06 2006-07-07 한국전자통신연구원 단백질 구조 검색 시스템 및 단백질 구조 검색 방법
CA2638912A1 (en) * 2006-02-20 2007-08-30 Phylogica Limited Method of constructing and screening libraries of peptide structures
US20070244652A1 (en) * 2006-04-14 2007-10-18 Zhou Carol L Ecale Structure Based Analysis For Identification Of Protein Signatures: PSCORE
US20070244651A1 (en) * 2006-04-14 2007-10-18 Zhou Carol E Structure-Based Analysis For Identification Of Protein Signatures: CUSCORE
US20080059077A1 (en) * 2006-06-12 2008-03-06 The Regents Of The University Of California Methods and systems of common motif and countermeasure discovery
US8467971B2 (en) * 2006-08-07 2013-06-18 Lawrence Livermore National Security, Llc Structure based alignment and clustering of proteins (STRALCP)
CA2663545A1 (en) * 2006-09-19 2008-03-27 Phylogica Limited Neuroprotective peptide inhibitors of ap-1 signaling and uses thereof
US7983887B2 (en) 2007-04-27 2011-07-19 Ut-Battelle, Llc Fast computational methods for predicting protein structure from primary amino acid sequence
US8822409B2 (en) * 2007-06-20 2014-09-02 Phylogica Limited Compositions and uses thereof for the treatment of acute respiratory distress syndrome (ARDS) and clinical disorders associated with therewith
US8452542B2 (en) * 2007-08-07 2013-05-28 Lawrence Livermore National Security, Llc. Structure-sequence based analysis for identification of conserved regions in proteins
CN101714187B (zh) * 2008-10-07 2011-09-28 中国科学院计算技术研究所 一种规模化蛋白质鉴定中的索引加速方法及相应的系统
EP2448966B1 (en) 2009-07-03 2018-11-14 Avipep Pty Ltd Immuno-conjugates and methods for producing them
WO2011075786A1 (en) 2009-12-23 2011-06-30 Avipep Pty Ltd Immuno-conjugates and methods for producing them 2
CN105224825B (zh) * 2015-10-30 2018-03-06 景德镇陶瓷大学 一种融合局部和全局特征的rna序列描述方法

Also Published As

Publication number Publication date
IL153760A0 (en) 2003-07-06
CN1447862A (zh) 2003-10-08
EP1301636A1 (en) 2003-04-16
CA2415787A1 (en) 2002-01-17
EP1301636A4 (en) 2006-05-24
WO2002004685A1 (en) 2002-01-17
ZA200300291B (en) 2004-01-22
JP2004503038A (ja) 2004-01-29
BR0112448A (pt) 2003-09-23
US20020150906A1 (en) 2002-10-17
KR20030043908A (ko) 2003-06-02
MXPA03000394A (es) 2004-09-13

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Legal Events

Date Code Title Description
MK5 Application lapsed section 142(2)(e) - patent request and compl. specification not accepted