ZA200103234B - Utilization of an antifungal protein from steptomyces tendae against plant pathogenic fungi. - Google Patents

Utilization of an antifungal protein from steptomyces tendae against plant pathogenic fungi. Download PDF

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Publication number
ZA200103234B
ZA200103234B ZA200103234A ZA200103234A ZA200103234B ZA 200103234 B ZA200103234 B ZA 200103234B ZA 200103234 A ZA200103234 A ZA 200103234A ZA 200103234 A ZA200103234 A ZA 200103234A ZA 200103234 B ZA200103234 B ZA 200103234B
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ZA
South Africa
Prior art keywords
afp
antifungal protein
plant pathogenic
pathogenic fungi
plant
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ZA200103234A
Inventor
Thomas Neuman
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Aventis Res & Tech Gmbh & Co
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Publication of ZA200103234B publication Critical patent/ZA200103234B/en

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    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01NPRESERVATION OF BODIES OF HUMANS OR ANIMALS OR PLANTS OR PARTS THEREOF; BIOCIDES, e.g. AS DISINFECTANTS, AS PESTICIDES OR AS HERBICIDES; PEST REPELLANTS OR ATTRACTANTS; PLANT GROWTH REGULATORS
    • A01N63/00Biocides, pest repellants or attractants, or plant growth regulators containing microorganisms, viruses, microbial fungi, animals or substances produced by, or obtained from, microorganisms, viruses, microbial fungi or animals, e.g. enzymes or fermentates
    • A01N63/50Isolated enzymes; Isolated proteins
    • AHUMAN NECESSITIES
    • A01AGRICULTURE; FORESTRY; ANIMAL HUSBANDRY; HUNTING; TRAPPING; FISHING
    • A01HNEW PLANTS OR NON-TRANSGENIC PROCESSES FOR OBTAINING THEM; PLANT REPRODUCTION BY TISSUE CULTURE TECHNIQUES
    • A01H1/00Processes for modifying genotypes ; Plants characterised by associated natural traits
    • CCHEMISTRY; METALLURGY
    • C07ORGANIC CHEMISTRY
    • C07KPEPTIDES
    • C07K14/00Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
    • C07K14/195Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
    • C07K14/36Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Actinomyces; from Streptomyces (G)
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N1/00Microorganisms, e.g. protozoa; Compositions thereof; Processes of propagating, maintaining or preserving microorganisms or compositions thereof; Processes of preparing or isolating a composition containing a microorganism; Culture media therefor
    • C12N1/20Bacteria; Culture media therefor
    • C12N1/205Bacterial isolates
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N15/00Mutation or genetic engineering; DNA or RNA concerning genetic engineering, vectors, e.g. plasmids, or their isolation, preparation or purification; Use of hosts therefor
    • C12N15/09Recombinant DNA-technology
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12NMICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
    • C12N5/00Undifferentiated human, animal or plant cells, e.g. cell lines; Tissues; Cultivation or maintenance thereof; Culture media therefor
    • C12N5/10Cells modified by introduction of foreign genetic material
    • C12N5/12Fused cells, e.g. hybridomas
    • C12N5/14Plant cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12PFERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
    • C12P21/00Preparation of peptides or proteins
    • C12P21/02Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12RINDEXING SCHEME ASSOCIATED WITH SUBCLASSES C12C - C12Q, RELATING TO MICROORGANISMS
    • C12R2001/00Microorganisms ; Processes using microorganisms
    • C12R2001/01Bacteria or Actinomycetales ; using bacteria or Actinomycetales
    • C12R2001/465Streptomyces

Abstract

The invention relates to the use of an antifungal protein (AFP) having a molecular weight of approximately 10kDa from Streptomyces tendae against plant pathogenic fungi from the Ascomycetes family.

Description

Description
Utilization of an antifungal protein from Streptomyces tendae against plant pathogenic fungi
The present invention relates to the use of an antifungal protein (AFP) having a molecular weight of approx. 10 kDa from Streptomyces tendae against plant pathogenic fungi from the Ascomycetes family.
Antifungal proteins have been described for some time, some of these proteins also being termed PR proteins (plant pathogenesis-related proteins) in the case of plants (Bol, J.F. & Linthorst, H.J.M. (1990), Annu.
Rev. Phytopathol., 28, 113). These proteins are formed by plants under stress conditions, for example in the case of viral or fungal infection, inducing an active defense mechanism of the plant which is termed “induced resistance” (Lindhorst, H.J.M., (1991) Cri. Rev. Plant
Sci., 10(2), 123). Some of these proteins have, for example, a chitinase activity or f-1,3-glucanase activity.
Proteins with an antifungal activity have already been detected from microorganisms too, some of these proteins also showing chitinase activity or f-1,3- glucanase activity. Other proteins, in contrast, act via an interaction of the fungal cell wall.
For example, an antifungal protein (AFP) having a size of approx. 10 kDa which is active against the fungal species Paecilomyces varriotii, Byssoclamis nivea,
Pencillium puberulum and Eupenicillium terrum has been isolated from Streptomyces tendae. However, the action was restricted to these species. Other species such as, for example, Paecilomyces carneus, Paecilomyces lilacenus, Penicillium chrysogenum or Penicillium claviforme are not inhibited. In addition, the use of
AFP is not justified commercially either since the fungal species mentioned are not plant pathogenic.
The object of the present invention was therefore to find an antifungal protein which 1s active against plant pathogenic fungi.
Surprisingly, it has now been found that AFP from
Streptomyces tendae is active against plant pathogenic fungi from the Ascomycetes family.
The subject-matter of present the invention is therefore the use of an antifungal protein (AFP) with a molecular weight of approx. 10 kDa from Streptomyces tendae against plant pathogenic fungi from the
Ascomycetes family, in particular against Botrytis cinera.
The antifungal protein mentioned contains a typical amino-terminal signal sequence, i.e. a hydrophilic
N-terminus is followed by a hydrophobic transmembrane region, which cause extracellular secretion. Moreover, two forms are known, namely a shorter form with a molecular weight of approx. 9 860 Da and a longer form with a molecular weight of approx. 10 300 Da.
Since AFP is secreted by Streptomyces tendae into the culture medium, it can be isolated for example directly from the Streptomyces tendae culture filtrate, following methods known to the skilled worker. As an alternative, AFP can be produced by genetic engineering, the gene isolated preferably being cloned into a so-called multicopy vector, for example plJ702 (Hopwood, D.A. et al. (1985) Genetic Manipulation of
Streptomyces. A Laboratory Manual. Norwich, U.K.) and using this construction to transform a suitable strain, for example the non-nikkomycin-producing strain
Streptomyces tendae NPY. An example of an AFP-encoding nucleic acid is shown in SEQ ID No. 1. When this preferred transformant was grown, for example, for 7 days in 200 ml of nutrient solution, approx. 6 mg of
AFP were obtained, which corresponds to 30 mg of AFP/1.
The production of AFP by genetic engineering via a preferably controlled fermentation, is therefore especially preferred.
For the use in accordance with the invention, AFP can be applied directly for example in the form of a formulation together with preferably at least one additional auxiliary. To this end, for example, plants attacked by fungi or endangered by fungal attack are sprayed with the formulation described. The AFP- concentration of the formula is generally from approx. 10 ug/ml up to approx. 500 mg/ml. Suitable auxiliaries are, for example, protease inhibitors, stabilizers such as glycerol, sucrose, salts, solvents or generally known substances from the field of crop protection.
So-called transgenic plants which are capable of producing AFP themselves are another possibility of providing protection against fungal infection.
Another embodiment is therefore the use according to the invention of AFP, the AFP being formed in a transgenic plant. The transgenic plant is, preferably, genetically engineered maize, cotton, potato, banana,
Arabidopsis, casava, tobacco, oilseed rape (canola), potato, sugar beet, cereals such as, for example, wheat, barley or oats, strawberries, vegetables such as, for example, cabbage, legumes such as, for example, peas or beans, tomato, lettuce or melon.
To generate a transgenic plant, a nucleic acid encoding
AFP, for example in the form of naked DNA, viral DNA or
RNA, or in the form of plasmid DNA, is introduced into a plant cell. An example of an AFP-encoding nucleic acid is shown in SEQ ID No. 1. However, the present invention also covers those nucleic acids which differ from the nucleic acid sequence of SEQ ID No. 1 owing to the degeneracy of the genetic code, but which encodes the same AFP amino acid sequence. Moreover, the invention covers those mutants or variants of the nucleic acid of SEQ ID No. 1 which encode an AFP protein which is active against plant pathogenic fungi of the Ascomycetes family, in particular against
Botrytis cinera. These include, for example, fusion proteins of the AFP protein with other foreign proteins or an AFP protein with an N-terminally deleted methionine. Other examples of variants are nucleic acids which hybridize on the stringent conditions with the nucleic acid of SEQ ID No. 1. The stringent hybridization conditions can be determined for example by Sambrook, J. et al. in Molecular Cloning, A
Laboratory Manual, 2nd Edition, Cold Spring Habour
Laboratory Press, 1989. Transgenic plants are subsequently regenerated from the transformed plant cells. Preferably, an AFP-encoding nucleic acid can be introduced into the plant cell by means of recombinant agrobacteria, by electroporation, by bombardment with microparticles and/or by means of polyethylene glycol.
The infection with recombinant Agrobacterium tumefaciens bacteria in plant cells of dicots is described, for example, by Klee, H. et al. (19897) Annu.
Rev. Plant Physiol. 38, 467 or EP-B2-0122791). The infection with recombinant Agrobacterium tumefaciens bacteria in plant cells of monocots is described, for example, by Ishida, Y. et al. (1996) Nature Biotech. 14, 745 with reference to maize (Zea mays L.). The agrobacteria used for this purpose have a T-DNA into which the AFP-expressing gene and, 1f appropriate, a suitable promoter, for example a plant phaseolin promoter (see, for example, EP-B2-0122791) or a viral 355 promoter (see, for example, Ishida, Y. et al.
(1996), above) had been inserted. The T-DNA can be transferred into plant cells for example by coculturing the recombinant agrobacteria together with immature embryos of the plant in question (see, for example,
Ishida, Y. et al. (1996), above). To select the transformed plant cells, it is preferred to use T-DNA constructs which are capable of expressing, in the plant cell, a resistance gene from the AFP gene to be expressed. A suitable resistance gene is, for example, the gene encoding phosphinothricin acetyltransferase (see, for example, Ishida, Y. et al. (1996), above).
Thus, successfully transformed plant cells can be selected for example by means of the corresponding antibiotic phosphinothricin. The regeneration of a plant from transformed plant cells is generally known (see, for example, Sagi et al. (1995), Nature Biotech, 13, 481-485, Ishida, Y. et al. (19%¢), above, or
Schopke et al. (1996), Nature Biotech, 14, 731-735.
In addition to the use of Agrobacterium tumefaciens as transformation means, other transformation methods are known and suitable, such as, for example, electro- poration, the bombardment with microparticles or the use of polyethylene glycol (see, for example, Potrykos, (1991) Annu. Rev. Plant Physiol. Mol. Biol., 42, 205;
Estruch, J.J. et al. (1997), Nature Biotech., 15, 137- 141 or Dingermann, T. (1995) BIOforum, 18, 252). For example, casava (Schopke et al. (1996), above) or banana (Sagi, et al. (1995), above) have already been transformed by bombarding plant cells with DNA-coated particles. In this method too, the AFP gene to be expressed 1s cloned into a suitable vector which preferably has a resistance gene allowing the subsequent selection of the transformed plant cells.
The recombinant vector is preferably applied to tungsten particles with which, for example, suspensions of embryogenic cells are bombarded (see, for example,
Sagi, et al. (1995), above). The «cell suspensions treated thus are subsequently selected for transformed plant cells using a suitable antibiotic, for example phosphinothricin, and a transgenic plant is regenerated therefrom, for example as already described above.
A considerable advantage of the present invention is that AFP is active against plant pathogenic fungi from the Ascomycetes family, in particular against Botrytis
Cinera, which have already developed a resistance in particular to one or more crop protection agents.
The examples which follow and the figure are intended to describe the invention in greater detail without imposing any limitation:
Sequence description
SEQ ID No. 1 shows a nucleic acid sequence encoding an antifungal (223) protein (AFP) from
Streptomyces tendae.
Examples
Example 1:
To prepare test plates, 50 pl of a spore suspension of
Botrytis cinerae were added to 100 ml of test agar (20 g/1 malt extract, 10 g/1 glucose, 2 g/l yeast extract, 0.5 ammonium sulfate, 15 g/l agar, pH 6.0). 25 ml of this were poured into Petri dishes. The final spore concentration was 10° spores/ml. Sterile anti- biotic test disks (Schleicher und Schuell, Dassel, Frg) 0.5 cm in diameter were subsequently applied to a test plate. Then, 5, 10, 15 and 20 pul of the AFP solution (100 mg/ml lyophilized culture filtrate of S. tendae- transformants) were subsequently pipetted onto the test disks and the test plate was incubated for 4 days at 30°C. The diameter of the inhibitory zone was 0.7 cm for 5 ul of AFP solution, 1 cm diameter for 10 ul, 1.3 cm for 15 nl of solution and 1.9 cm for 20 ul.
Example 2:
To prepare test plates, 50 pl of a spore suspension of
Botrytis cinerae ZF 3629 (resistant to BCM (Benlat,
Benomyl™, Hoechst Schering AgrEvo GmbH, Frankfurt, carbendazem) were added to 100 ml of test agar (20 g/1 malt extract, 10 g/l glucose, 2 g/l yeast extract, 0.5 ammonium sulfate, 15 g/1 agar, pH 6.0). 25 ml of this were poured into Petri dishes. The final spore concentration was 10° spores/ml. Sterile antibiotic test disks (Schleicher und Schuell, Dassel, Frg) 0.5 cm in diameter were subsequently applied to a test plate.
Then, 5, 10, 15 and 20 ml of the AFP solution (100 mg/ml lyophilized culture filtrate of S. tendae- transformants) were subsequently pipetted onto the test disks and the test plate was incubated for 4 days at 30°C. The diameter of the inhibitory zone was 0.9 cm for 5 ul of AFP solution, 1.3 cm diameter for 10 ul, 1.9 cm for 15 nl of solution and 2.2 cm for 20 ul.
Example 3 - Improved production by fermentation:
In a flask equipped with a hose, 100 ml of the preculture medium (103 g/l1 sucrose, 20 g Tryptic Soy
Broth (Oxoid, Wesel), 10 g/1 MgCl, and 10 g/l yeast extract) were inoculated with an agar section of strain
S. tendae. The culture was grown for 5 days at 28°C at 200 rpm on an orbital shaker. 10 1 of the production medium (103 g/l sucrose, 20 g
Tryptic Soy Broth (Oxoid, Wesel), 10 g/1 MgCl,, 10 g/1 yeast extract, 100 pl desmophen, pH 7.5) were inoculated with 100 ml of the above-described preculture.
The fermenter employed was a Biostat E (Braun,
Melsungen). Fermentation was carried out for 4 days at 28°C, 700 rpm and 0.5 vvm of air. Thereupon, fermentation was stopped, and the culture supernatant was harvested by centrifugation at 3000 rpm and 4°C.
The batch was subsequently dried by lyophilization. It was possible to employ the powder directly. If 15 pul of the 1lyophilizate (100 mg/ml) were employed against
Botrytis cinerae in an inhibitory-zone test, an inhibitory zone of 1.7 cm and, against Botrytis cinerae
ZF 3629, an inhibitory zone of 2.3 cm were detected.

Claims (10)

We claim:
1. The use of an antifungal protein (AFP) having a molecular weight of approx. 10 kDA from Streptomyces tendae against plant pathogenic fungi from the Ascomycetes family, in particular against Botrytis cinera.
2. The use as claimed in claim 1, wherein AFP is used in the form of a formulation together with preferably at least one auxiliary.
3. The use as claimed in claim 1, wherein AFP is formed in a transgenic plant.
4, The use as claimed in claim 3, wherein the transgenic plant 1s selected from among maize, cotton, potato, banana, Arabidopsis, casava, tobacco, oilseed rape (canola), potato, sugar beet, cereals, strawberries, vegetables, legumes, tomato, lettuce or melon.
5. The use as claimed in claim 4, wherein cereals are selected from amongst wheat, barley or oats, the vegetable used is cabbage, or the legumes are selected from amongst peas or beans.
6. The use as claimed in any of claims 3 - 5, wherein the transgenic plant comprises a nucleic acid as claimed in SEQ ID No. 1, SEQ ID No. 1 being part of the claim.
7. The use as claimed in any of claims 1 - 6, wherein the plant pathogenic fungus stated is resistant to one or more crop protection agents.
-9/A
8. The use as claimed in any one of the preceding claims, substantially as herein described and exemplified.
9. An antifungal protein (AFP) having a molecular weight of approx. 10 kDA from Streptomyces tendae, for use against plant pathogenic fungi from the Ascomycetes family, in particular against Botrytis cinera.
10. An antifungal protein (AFP) as claimed in claim 9, substantially as herein described and exemplified. AMENDED SHEET
ZA200103234A 1998-10-21 2001-04-20 Utilization of an antifungal protein from steptomyces tendae against plant pathogenic fungi. ZA200103234B (en)

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DE19848517A DE19848517A1 (en) 1998-10-21 1998-10-21 Controlling phytopathogenic fungi, useful particularly against Botrytis cinerea resistant to known fungicides, by treatment with peptide from Streptomyces tendae

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KR100883190B1 (en) * 2007-08-09 2009-02-12 경상대학교산학협력단 Antibiotics preparation containing heat-stable protein having antimicrobial activity
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DE2537028A1 (en) * 1975-08-20 1977-03-10 Bayer Ag ANTIBIOTICUM, A METHOD FOR ITS MANUFACTURING AND ITS USE AS A PLANT PROTECTION PRODUCT
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DE19848517A1 (en) 2000-04-27
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CA2347706A1 (en) 2000-04-27
AU6467999A (en) 2000-05-08
JP2002527456A (en) 2002-08-27
IL142597A0 (en) 2002-03-10
KR20010083915A (en) 2001-09-03
EP1123004A1 (en) 2001-08-16
DE59901521D1 (en) 2002-06-27
AU748455B2 (en) 2002-06-06
WO2000022932A1 (en) 2000-04-27
CN1324214A (en) 2001-11-28
NZ511213A (en) 2003-03-28
ID29012A (en) 2001-07-26
EP1123004B1 (en) 2002-05-22

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